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content/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-create.md

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#### `--working-dir=<dir>`
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\[Advanced] The directory in which the specified command should be
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executed. If this argument is not provided, the command is executed in
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the value of `--source-root` passed to codeql database create, if one exists. If no `--source-root` argument is provided, the command is executed in the
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current working directory.
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\[Advanced] The working directory for this command. If this argument is
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not provided, the working directory defaults to the value of
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`--source-root` passed to codeql database create, if one exists. If no `--source-root` argument is provided, the current working directory is
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used.
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#### `--no-run-unnecessary-builds`
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content/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-finalize.md

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#### `--working-dir=<dir>`
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\[Advanced] The directory in which the specified command should be
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executed. If this argument is not provided, the command is executed in
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the value of `--source-root` passed to [codeql database create](/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-create), if one exists. If no `--source-root` argument is provided, the command is executed in the
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current working directory.
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\[Advanced] The working directory for this command. If this argument is
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not provided, the working directory defaults to the value of
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`--source-root` passed to [codeql database create](/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-create), if one exists. If no `--source-root` argument is provided, the current working directory is
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used.
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#### `--additional-dbs=<database>[:<database>...]`
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content/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-index-files.md

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#### `--working-dir=<dir>`
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\[Advanced] The directory in which the specified command should be
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executed. If this argument is not provided, the command is executed in
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the value of `--source-root` passed to [codeql database create](/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-create), if one exists. If no `--source-root` argument is provided, the command is executed in the
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current working directory.
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\[Advanced] The working directory for this command. If this argument is
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not provided, the working directory defaults to the value of
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`--source-root` passed to [codeql database create](/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-create), if one exists. If no `--source-root` argument is provided, the current working directory is
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used.
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### Options to control extractor behavior
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content/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-trace-command.md

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#### `--working-dir=<dir>`
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\[Advanced] The directory in which the specified command should be
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executed. If this argument is not provided, the command is executed in
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the value of `--source-root` passed to [codeql database create](/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-create), if one exists. If no `--source-root` argument is provided, the command is executed in the
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current working directory.
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\[Advanced] The working directory for this command. If this argument is
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not provided, the working directory defaults to the value of
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`--source-root` passed to [codeql database create](/code-security/reference/code-scanning/codeql/codeql-cli-manual/database-create), if one exists. If no `--source-root` argument is provided, the current working directory is
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used.
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#### `--no-run-unnecessary-builds`
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content/code-security/tutorials/secure-your-dependencies/automating-dependabot-with-github-actions.md

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> [!NOTE]
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> If you use status checks to test pull requests, you should enable **Require status checks to pass before merging** for the target branch for {% data variables.product.prodname_dependabot %} pull requests. This branch protection rule ensures that pull requests are not merged unless **all the required status checks pass**. For more information, see [AUTOTITLE](/repositories/configuring-branches-and-merges-in-your-repository/managing-protected-branches/managing-a-branch-protection-rule).
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If the target branch uses a merge queue, the built-in `GITHUB_TOKEN` cannot add pull requests to the queue. In this case, you must authenticate the workflow with a {% data variables.product.pat_generic %} or a {% data variables.product.prodname_github_app %} token that has permission to merge, and use it in place of `GITHUB_TOKEN` for the `gh pr merge` step.
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## {% data variables.product.prodname_dependabot %} and {% data variables.product.prodname_actions %} policies
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Normally, whether a workflow can run in a repository depends on {% data variables.product.prodname_actions %} **policy checks** and whether {% data variables.product.prodname_actions %} is **enabled** at the organization or repository level. These controls can restrict workflows from running—especially when external actions are blocked or {% data variables.product.prodname_actions %} is disabled entirely.

content/copilot/concepts/agents/copilot-cli/about-cli-plugins.md

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For more about adding marketplaces and installing plugins from them, see [AUTOTITLE](/copilot/how-tos/copilot-cli/customize-copilot/plugins-finding-installing).
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Enterprise administrators can also define plugin standards that apply across the enterprise, including specifying additional marketplaces and plugins that are automatically installed for all {% data variables.copilot.copilot_cli_short %} users. See [AUTOTITLE](/copilot/concepts/agents/copilot-cli/about-enterprise-plugin-standards).
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Enterprise administrators can define plugin standards that apply to users on the enterprise's {% data variables.product.prodname_copilot_short %} plan, including specifying additional marketplaces and plugins that are automatically installed for {% data variables.copilot.copilot_cli_short %} users. See [AUTOTITLE](/copilot/concepts/agents/copilot-cli/about-enterprise-plugin-standards).
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## Plugins compared with manual configuration
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content/copilot/concepts/agents/copilot-cli/about-enterprise-plugin-standards.md

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> [!NOTE] This feature is in {% data variables.release-phases.public_preview %} and subject to change.
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Enterprise-managed plugin standards allow administrators to **define and enforce policies for plugin availability** in {% data variables.copilot.copilot_cli_short %} across their enterprise. By configuring a `settings.json` file in the enterprise's `.github-private` repository, administrators can specify which plugin marketplaces are available to users and which plugins are automatically installed for all enterprise users.
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Enterprise-managed plugin standards allow administrators to **define and enforce policies for plugin availability** in {% data variables.copilot.copilot_cli_short %} for users on the enterprise's {% data variables.product.prodname_copilot_short %} plan. By configuring a `settings.json` file in the enterprise's `.github-private` repository, administrators can specify which plugin marketplaces are available to users and which plugins are installed automatically.
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## How plugin standards work
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For plugin standards, the file can define:
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* **Known marketplaces**. Plugin marketplaces that are available to users for browsing and installing plugins.
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* **Default-enabled plugins**. Specific plugins that are automatically installed for all enterprise users when they authenticate with the CLI.
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* **Default-enabled plugins**. Specific plugins that are automatically installed when users authenticate with the CLI.
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When a user signs in to {% data variables.copilot.copilot_cli_short %}, the client queries an API endpoint that reads the `settings.json` from the enterprise's `.github-private` repository. The policies defined in the file are then applied to the user's CLI session.
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content/copilot/how-tos/administer-copilot/manage-for-enterprise/manage-agents/configure-enterprise-plugin-standards.md

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> [!NOTE] This feature is in {% data variables.release-phases.public_preview %} and subject to change.
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You can apply settings to control users' available plugin marketplaces and default-installed plugins. These settings apply to users on your enterprise's {% data variables.product.prodname_copilot_short %} plan. For more information, see [AUTOTITLE](/copilot/concepts/agents/copilot-cli/about-enterprise-plugin-standards).
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1. In your enterprise's `.github-private` repository, navigate to the `.github/copilot/` directory. If you don't have a `.github-private` repository yet, see [AUTOTITLE](/copilot/how-tos/administer-copilot/manage-for-enterprise/manage-agents/prepare-for-custom-agents).
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1. Create or edit the `settings.json` file at `.github/copilot/settings.json`.
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1. Add your plugin policy configuration to the file. The `settings.json` file supports the following top-level properties:
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1. Commit and push your changes to the default branch of the `.github-private` repository.
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Once the configuration is committed, enterprise users will see the specified marketplaces and pre-installed plugins the next time they authenticate with {% data variables.copilot.copilot_cli_short %}.
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Once the configuration is committed, users will see the specified marketplaces and pre-installed plugins the next time they authenticate with {% data variables.copilot.copilot_cli_short %}.
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If a user does not see these settings, ensure they receive access to {% data variables.product.prodname_copilot_short %} through your enterprise or one of its organizations. If a user receives a license from multiple billing entities, ensure they have selected your enterprise in the "Usage billed to" dropdown in their [personal {% data variables.product.prodname_copilot_short %} settings](https://github.com/settings/copilot/features).

content/copilot/reference/customization-cheat-sheet.md

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|---------|:-------:|:-------------:|:---------:|:-------:|:-----:|:-------:|:---:|
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| Custom instructions ||| P | P | P |||
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| Prompt files ||| P || P |||
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| {% data variables.copilot.custom_agents_caps_short %} || | P | P | P |||
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| {% data variables.copilot.custom_agents_caps_short %} || | P | P | P |||
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| {% data variables.copilot.subagents_caps_short %} ||| P | P | P |||
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| Agent skills || | P |||||
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| Agent skills || | P |||||
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| Hooks | P |||||||
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| MCP servers ||||||||
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content/enterprise-onboarding/index.md

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title: 'Automating processes with GitHub Apps'
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description: 'Create and install apps to automate processes securely in your enterprise and organizations.'
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guides:
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- href: '/enterprise-onboarding/github-apps/automations-in-your-enterprise'
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- href: '/enterprise-onboarding/github-apps/create-enterprise-apps'
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- href: '/enterprise-onboarding/github-apps/install-enterprise-apps'
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- id: 'support_for_your_enterprise'

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