Test & Lint Python

Cleanup agent-file-template.md #2920

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Run time

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Job	Run time
ruff	13s
pytest (windows-latest, 3.13)	1m 42s
pytest (ubuntu-latest, 3.11)	1m 44s
pytest (windows-latest, 3.12)	1m 41s
pytest (ubuntu-latest, 3.12)	1m 48s
pytest (windows-latest, 3.11)	1m 47s
pytest (ubuntu-latest, 3.13)	1m 34s
	10m 29s