Test & Lint Python

fix: paths-only skips branch validation, setup-plan preserves existin… #3211

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Run time

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Job	Run time
pytest (ubuntu-latest, 3.13)	2m 5s
pytest (windows-latest, 3.12)	5m 54s
pytest (ubuntu-latest, 3.11)	1m 55s
pytest (windows-latest, 3.11)	4m 6s
ruff	16s
pytest (ubuntu-latest, 3.12)	2m 12s
pytest (windows-latest, 3.13)	3m 44s
	20m 12s