Test & Lint Python

fix: rewrite extension-relative subdir paths in generated command bodies #5250

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Run time

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Job	Run time
pytest (macos-latest, 3.14)	3m 23s
pytest (macos-latest, 3.13)	2m 52s
pytest (windows-latest, 3.14)	4m 50s
pytest (windows-latest, 3.13)	10m 49s
ruff	10s
pytest (ubuntu-latest, 3.13)	7m 20s
pytest (ubuntu-latest, 3.14)	3m 25s
	32m 49s