is there a container?

[RichardCorbett]

Hi folks,
Is there a docker or singularity container available for me to run speedseq sv?

thanks,
Richard

[lecorguille]

And/Or a bioconda package?

That will automatically provides a docker container thanks to BioContainer project and so a Singularity image thanks to singularity pull docker://

[leagleag]

Bump. A couple of years later...

[stefanc-23]

I know it's been 4 years now, but I found this repo here. It's a limited version of the full thing (I had to manually install bwa inside the container to run speedseq align properly), but it's a good place to start with a base setup