no-Alex configuration, advanced sorting fails

[AI-rrr]

if one uses no-Alex configuration, advanced sorting will fail.
Solution is to move S = trace.stoi[: trace.first_bleach] to else statement:

elif setup == "advanced":
conditions = []

            E = trace.fret[: trace.first_bleach]

            # TODO: write a warning that stoichiometry will be ignored?
            if lib.math.contains_nan(trace.red.int):
                cond1 = True
            else:
                S = trace.stoi[: trace.first_bleach]
                cond1 = S_med_lo < np.median(S) < S_med_hi

[komodovaran]

Hi @AI-wwu. Thanks for taking your time! I've developed most of the project, but unfortunately I've moved on to an entirely different field professionally and don't really have the time to look into maintenance of this.

If you've found solutions to some of your problems you're welcome to set up some pull requests and I'll check it out :)