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pre-commit = "^4.2.0" -deptry = "^0.23.0" +deptry = ">0.23.0" pytest = "^8.3.5" -pytest-asyncio = "^0.26.0" +pytest-asyncio = "^1.4.0" [tool.pytest.ini_options] diff --git a/src/ogs_riverger/efas/efas_manager.py b/src/ogs_riverger/efas/efas_manager.py index c647d76..dc1ec16 100644 --- a/src/ogs_riverger/efas/efas_manager.py +++ b/src/ogs_riverger/efas/efas_manager.py @@ -10,12 +10,17 @@ from tempfile import TemporaryDirectory from typing import Any from typing import Literal +from typing import TYPE_CHECKING from uuid import uuid1 from zipfile import ZipFile import dask import numpy as np -import xarray as xr + +if TYPE_CHECKING: + import xarray as xr +else: + import ogs_riverger.utils.lazy_xarray as xr import ogs_riverger.efas.download_tools as efas_download from ogs_riverger.efas.download_tools import EfasDataSource @@ -81,7 +86,7 @@ def read_efas_data_files( config_content: Iterable[RiverConfigElement], efas_domain_file: PathLike, pool: None | Pool = None, -) -> xr.Dataset: +) -> "xr.Dataset": """Reads and merges the content of multiple downloaded EFAS data files. EFAS data files are distributed as GRIB or NetCDF files, optionally @@ -149,9 +154,9 @@ def read_efas_data_files( def _read_raw_content_of_efas_file( file_path: Path, config_content: Iterable[RiverConfigElement], - efas_domain: xr.Dataset, + efas_domain: "xr.Dataset", temp_dir: Path, -) -> xr.Dataset: +) -> "xr.Dataset": """ Reads the raw content of an EFAS file. @@ -224,8 +229,8 @@ def _read_raw_content_of_efas_file( def _read_raw_content_of_unzipped_efas_file( file_path: Path, config_content: Iterable[RiverConfigElement], - efas_domain: xr.Dataset, -) -> xr.Dataset: + efas_domain: "xr.Dataset", +) -> "xr.Dataset": """ Reads and processes the raw content of an unzipped EFAS file to extract specific river data based on given configurations and EFAS domain. @@ -409,9 +414,9 @@ def _read_raw_content_of_unzipped_efas_file( def _read_single_efas_file( file_path: Path, config_content: Iterable[RiverConfigElement], - efas_domain: xr.Dataset, + efas_domain: "xr.Dataset", temp_dir: Path, -) -> xr.Dataset: +) -> "xr.Dataset": """Determines the type of EFAS file and processes it accordingly. This function reads the EFAS file content and examines its structure to @@ -497,7 +502,7 @@ def _read_single_efas_file( ) -def _read_efas_forecast_file(dataset: xr.Dataset): +def _read_efas_forecast_file(dataset: "xr.Dataset"): """Read the content of a forecast EFAS file. This function is called by `_read_single_efas_file` when the file has @@ -550,7 +555,7 @@ def _read_efas_forecast_file(dataset: xr.Dataset): return dataset_sliced -def _read_efas_operative_grib_file(dataset: xr.Dataset): +def _read_efas_operative_grib_file(dataset: "xr.Dataset"): """Read the content of an operative EFAS file. This function is called by `_read_single_efas_file` when the file has diff --git a/src/ogs_riverger/read_config.py b/src/ogs_riverger/read_config.py index 7722cd4..8ddbfdd 100644 --- a/src/ogs_riverger/read_config.py +++ b/src/ogs_riverger/read_config.py @@ -248,9 +248,14 @@ def _apply_biogeochemical_profile( ): biogeochemical = {} if "biogeochemical_profile" in raw_river: - biogeochemical = profiles[ - raw_river["biogeochemical_profile"] - ].copy() + profile_name = raw_river["biogeochemical_profile"] + if profile_name not in profiles: + raise ValueError( + f'River "{raw_river["name"]}" references a ' + f'biogeochemical profile "{profile_name}" that is not ' + f"defined in the configuration file." + ) + biogeochemical = profiles[profile_name].copy() if "biogeochemical" in raw_river: biogeochemical.update(raw_river["biogeochemical"]) diff --git a/src/ogs_riverger/utils/lazy_xarray.py b/src/ogs_riverger/utils/lazy_xarray.py new file mode 100644 index 0000000..74a124e --- /dev/null +++ b/src/ogs_riverger/utils/lazy_xarray.py @@ -0,0 +1,24 @@ +"""Lazy proxy for xarray. + +Importing this module does *not* import xarray. The real import happens only +when an attribute (e.g. ``xr.Dataset``, ``xr.open_dataset``) is first +accessed, via the module-level ``__getattr__`` hook defined in PEP 562. + +Usage:: + + import ogs_riverger.utils.lazy_xarray as xr + + ds = xr.open_dataset(...) # xarray is imported here, on first access +""" + +_XARRAY = None + + +def __getattr__(name: str): + global _XARRAY + if _XARRAY is None: + import xarray + + _XARRAY = xarray + + return getattr(_XARRAY, name) diff --git a/tests/fixtures.py b/tests/fixtures.py index 8713c94..af5f38c 100644 --- a/tests/fixtures.py +++ b/tests/fixtures.py @@ -41,6 +41,13 @@ def config_file_example(tmp_path): "temperature_variation": 5, "average_salinity": 5 }, + "bgc_profiles": { + "tyr": { + "B1c": 100, + "B1n": 10, + "B1p": 1 + } + }, "default_model": "stem_flux", "rivers": [ {