options(teal.log_level = "ERROR", teal.show_js_log = FALSE)
options(teal.log_muffle = FALSE)
rm(list =ls())
devtools::load_all("../teal.reporter")
# devtools::load_all("../teal.transform")
devtools::load_all("../teal")
devtools::load_all("../teal.modules.clinical")
# ======
library(nestcolor)
ADSL <- tmc_ex_adsl
ADTTE <- tmc_ex_adtte
ADSL$RACE <- droplevels(ADSL$RACE) %>% with_label("Race")
arm_ref_comp <- list(
ARM = list(
ref = "B: Placebo",
comp = c("A: Drug X", "C: Combination")
),
ARMCD = list(
ref = "ARM B",
comp = c("ARM A", "ARM C")
)
)
app <- init(
data = cdisc_data(
ADSL = ADSL,
ADTTE = ADTTE,
code = "
ADSL <- tmc_ex_adsl
ADTTE <- tmc_ex_adtte
ADSL$RACE <- droplevels(ADSL$RACE) %>% with_label(\"Race\")
"
),
modules = modules(
tm_g_forest_tte(
label = "Forest Survival",
dataname = "ADTTE",
arm_var = choices_selected(
variable_choices(ADSL, c("ARM", "ARMCD")),
"ARMCD"
),
arm_ref_comp = arm_ref_comp,
paramcd = choices_selected(
value_choices(ADTTE, "PARAMCD", "PARAM"),
"OS"
),
subgroup_var = choices_selected(
variable_choices(ADSL, names(ADSL)),
c("BMRKR2", "SEX")
),
strata_var = choices_selected(
variable_choices(ADSL, c("STRATA1", "STRATA2")),
"STRATA2"
)
)
)
)
# ======
runApp(app, launch.browser = TRUE)
The following app runs correctly when
teal.transformis onmainbut fails on898_save_app_stata3@main.(All other packages on
898_save_app_stata3@main).app code