[codex] Fix default issue count

[jeremymcs]

Summary

• exclude closed worked issue history from the default issue list/count
• keep open worked issues visible in the default issue list
• add a regression test for stale closed worked rows inflating totals

Root cause

The runtime requested synced issues with includeWorked: true, which made the default dashboard include closed issues that had prior PatchDeck work. The storage filter also treated includeWorked: false as excluding open worked issues, so the runtime could not simply turn it off without hiding active worked issues.

Verification

• node --import tsx --test server/appRuntime.test.ts --test-name-pattern "closed worked issues"
• npm run check

Note: repo pre-commit guidance asks for /simplify when claude is available. I ran claude -p "/simplify server/appRuntime.ts server/memoryStorage.ts server/sqliteStorage.ts server/appRuntime.test.ts" --permission-mode bypassPermissions, but it produced no output and hung until stopped.

[github-actions]

📄 Documentation Review Reminder

This PR changes source files but does not update any public documentation.

Changed source files:

server/appRuntime.test.ts
server/appRuntime.ts
server/memoryStorage.ts
server/sqliteStorage.ts

Please check if documentation in docs/public/ needs to be updated:

• No documentation update needed
• Documentation updated in this PR
• Follow-up documentation issue created

Public docs are Markdown files in docs/public/. They are automatically
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Available docs: getting-started.md, pr-babysitter.md, agent-dispatch.md, configuration.md, pr-questions.md