PyBNF/CITATION.cff at main · lanl/PyBNF · GitHub

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cff-version: 1.2.0
message: If you use PyBioNetFit (pybnf), please cite the works listed below.
title: PyBioNetFit (pybnf)
type: software
version: 1.3.0
repository-code: https://github.com/lanl/PyBNF

preferred-citation:
  type: article
  authors:
    - family-names: Mitra
      given-names: Eshan D.
    - family-names: Suderman
      given-names: Ryan
    - family-names: Colvin
      given-names: Joshua
    - family-names: Ionkov
      given-names: Alexander
    - family-names: Hu
      given-names: Andrew
    - family-names: Sauro
      given-names: Herbert M.
    - family-names: Posner
      given-names: Richard G.
    - family-names: Hlavacek
      given-names: William S.
  title: PyBioNetFit and the Biological Property Specification Language
  journal: iScience
  volume: "19"
  pages: 1012-1036
  date-published: 2019-09-27
  doi: 10.1016/j.isci.2019.08.045

references:
  - type: article
    authors:
      - family-names: Mitra
        given-names: Eshan D.
      - family-names: Hlavacek
        given-names: William S.
    title: Bayesian inference using qualitative observations of underlying continuous variables
    journal: Bioinformatics
    volume: "36"
    issue: "10"
    pages: 3177-3184
    date-published: 2020-02-12
    doi: 10.1093/bioinformatics/btaa084

  - type: article
    authors:
      - family-names: Neumann
        given-names: Jacob
      - family-names: Lin
        given-names: Yen Ting
      - family-names: Mallela
        given-names: Abhishek
      - family-names: Miller
        given-names: Ely F.
      - family-names: Colvin
        given-names: Joshua
      - family-names: Duprat
        given-names: Abell T.
      - family-names: Chen
        given-names: Ye
      - family-names: Hlavacek
        given-names: William S.
      - family-names: Posner
        given-names: Richard G.
    title: Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit
    journal: Bioinformatics
    date-published: 2022-03-22
    doi: 10.1093/bioinformatics/btac004