From 36f1e4d1d1e06c2c9e2063f82f2da5475d9d0419 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 19:59:55 +0100 Subject: [PATCH 01/78] feat(release): rebuild knowledge bundle before tagging Inserts npm install + npm run build + conditional bundle commit into ./release between the dirty-tree gate and version-file update. Runs in all VERSION_STRATEGY branches, including "none". Build failure aborts before tagging so no stale bundle ships. Dry-run path unaffected. Refs tick-7f4725. --- .tick/tasks.jsonl | 4 +- release | 24 +++ tests/scripts/test-release-build.sh | 295 ++++++++++++++++++++++++++++ 3 files changed, 321 insertions(+), 2 deletions(-) create mode 100755 tests/scripts/test-release-build.sh diff --git a/.tick/tasks.jsonl b/.tick/tasks.jsonl index 79e436d62..7c8e31359 100644 --- a/.tick/tasks.jsonl +++ b/.tick/tasks.jsonl @@ -32,6 +32,6 @@ {"id":"tick-2e511f","title":"Phase 7: Setup Wizard","status":"done","priority":2,"refs":["knowledge-base-7"],"transitions":[{"from":"open","to":"in_progress","at":"2026-04-19T16:28:36Z","auto":true},{"from":"in_progress","to":"done","at":"2026-04-19T16:44:49Z","auto":true}],"parent":"tick-cbbd13","created":"2026-04-09T19:04:09Z","updated":"2026-04-19T16:44:49Z","closed":"2026-04-19T16:44:49Z"} {"id":"tick-78c1c7","title":"Setup Wizard: System Config + Project Init + Stub Mode","status":"done","priority":2,"type":"task","refs":["knowledge-base-7-1"],"description":"Problem: Users need a single entry point to configure the knowledge base for the first time. This involves system-level configuration (API keys, provider choice) that lives in the user's home directory and project-level initialisation that lives in .workflows/. Both must be handled in one flow so the user doesn't need to know the internal structure.\n\nSolution: Implement the knowledge setup command as an interactive wizard using Node's readline interface, handling system config, project init, and stub mode in one guided flow.\n\nOutcome: A user can run one command and have a fully configured knowledge base ready for use, with clear prompts at each step and graceful handling of partial or existing configuration.\n\nDo:\n- Implement the setup command handler in the CLI (invoked by Task 3-1 dispatch).\n- Invocation: knowledge setup (no arguments)\n- HUMAN-ONLY — uses interactive prompts throughout via Node readline interface (process.stdin/process.stdout). Claude cannot handle interactive terminals — this is the natural protection against accidental invocation (design doc line 632).\n\nSTEP 1: SYSTEM CONFIG (~/.config/workflows/config.json):\n- Check if system config already exists.\n - If it exists: read it, display current settings, ask if the user wants to reconfigure or skip. If skip, proceed to Step 2.\n - If it does not exist: create ~/.config/workflows/ directory if needed.\n- Prompt for provider:\n Which embedding provider? (openai / skip)\n - openai: proceed with OpenAI configuration\n - skip: stub mode (keyword-only search, no embeddings). Write config with no provider field. Display clear message about limitations. Proceed to Step 2.\n- If openai selected:\n - Prompt for model (default: text-embedding-3-small):\n Embedding model [text-embedding-3-small]:\n - Prompt for dimensions (default: 1536):\n Vector dimensions [1536]:\n - Prompt for API key env var name (default: OPENAI_API_KEY):\n API key environment variable [OPENAI_API_KEY]:\n - Check if the env var is set in the current environment:\n - If set: validate with a test embed call — embed a short test string and verify a vector is returned. If validation fails, display the error and ask the user to fix it or continue anyway.\n - If not set: warn the user and explain they need to set this env var in their shell profile before using the knowledge base. Do not block — they may be setting it up for later.\n- Write system config to ~/.config/workflows/config.json:\n { knowledge: { provider, model, dimensions, api_key_env, similarity_threshold: 0.8, decay_months: 6 } }\n- For stub mode (skip): write minimal config:\n { knowledge: { similarity_threshold: 0.8, decay_months: 6 } }\n\nSTEP 2: PROJECT INIT (.workflows/.knowledge/):\n- Check if project knowledge base directory already exists with config.json and store.msp.\n - If fully initialised: display status and ask to skip or reinitialise. If skip, proceed to Step 3.\n - If partially initialised (directory exists but missing files): complete the missing pieces.\n - If not initialised: create from scratch.\n- Create .workflows/.knowledge/ directory.\n- Write .workflows/.knowledge/config.json — project-level config. By default this is empty (inherits everything from system config):\n { knowledge: {} }\n The user can customise project-level overrides later by editing this file.\n- Create an empty Orama store and save it to .workflows/.knowledge/store.msp using createStore + saveStore from Phase 1. Use the dimensions from the resolved config (system + project merge).\n- Write .workflows/.knowledge/metadata.json with the provider/model/dimensions from the resolved config (or empty provider fields for stub mode).\n\nREADLINE INTERFACE:\n- Use Node built-in readline module (require('readline')).\n- Create interface with input: process.stdin, output: process.stdout.\n- Use rl.question() for prompts with defaults shown in brackets.\n- Close the interface when done.\n- If stdin is not a TTY (piped input, non-interactive environment): detect with process.stdin.isTTY and abort with message: knowledge setup requires an interactive terminal. Run it directly, not through Claude.\n\nAcceptance Criteria:\n- knowledge setup prompts for provider, model, dimensions, API key env var\n- System config is written to ~/.config/workflows/config.json\n- Project knowledge base is initialised at .workflows/.knowledge/ with config.json, store.msp, metadata.json\n- Test embed call validates the API key when configured\n- Stub mode writes config without provider, displays limitation message\n- Existing system config is detected and can be skipped or reconfigured\n- Existing project init is detected and can be skipped\n- Non-interactive terminal is detected and aborts with clear message\n- npm run build succeeds with the setup command included\n\nTests:\n- No automated tests for the interactive flow — it is inherently human-driven.\n- Unit tests for the non-interactive parts (tests/scripts/test-knowledge-config.cjs — extend from Task 3-1):\n - it creates a valid system config object from provider choices\n - it creates a valid stub-mode config object\n - it detects existing system config correctly\n - it detects existing project init correctly\n - it creates the project directory structure correctly\n\nEdge Cases:\n- ~/.config/workflows/ directory does not exist — create it (mkdir -p equivalent with { recursive: true })\n- .workflows/ directory does not exist — this means no workflow project exists. Display error: No .workflows/ directory found. Initialise a workflow project first.\n- System config file exists but is invalid JSON — display error, offer to overwrite\n- API key env var is set but the test embed call fails (wrong key, network error) — display error, offer to continue setup anyway (user may fix the key later)\n- User presses Ctrl+C during setup — readline handles SIGINT, process exits cleanly\n- Previous setup was stub mode, user re-runs with openai — detect existing store has no vectors, suggest knowledge rebuild after setup completes\n\nSpec Reference: knowledge-base/design.md — knowledge setup command (lines 626-633, interactive wizard flow, skip logic, stub mode), System config creation flow review finding #18 (line 1008), Configuration Hierarchy section (lines 258-301, system and project config schemas)","transitions":[{"from":"open","to":"in_progress","at":"2026-04-19T16:28:36Z","auto":false},{"from":"in_progress","to":"done","at":"2026-04-19T16:36:59Z","auto":false}],"parent":"tick-2e511f","created":"2026-04-09T19:05:02Z","updated":"2026-04-19T16:36:59Z","closed":"2026-04-19T16:36:59Z"} {"id":"tick-b4348b","title":"Setup Wizard: Initial Indexing + Idempotency + CLI Integration","status":"done","priority":2,"type":"task","refs":["knowledge-base-7-2"],"description":"Problem: After system config and project init (Task 7-1), the knowledge base is empty. Existing projects may have dozens of completed artifacts that need to be indexed. The setup wizard must automatically index everything as its final step, and re-running setup must be safe — skipping already-completed steps without duplicating work.\n\nSolution: Wire up the existing bulk index logic (Task 4-4) as the final step of the setup wizard, ensure the full setup flow is idempotent, and register setup in the CLI dispatch.\n\nOutcome: Running knowledge setup on a project with existing completed work populates the knowledge base immediately. Re-running setup on an already-configured project skips to indexing (or exits if everything is done).\n\nDo:\n\nINITIAL INDEXING (Step 3 of the setup wizard):\n- After system config (Step 1) and project init (Step 2) complete (or are skipped), run initial indexing.\n- This delegates to the existing knowledge index (no args) bulk index logic from Task 4-4.\n- The bulk index discovers all completed artifacts via manifest, diffs against the store (which is empty for first setup), and indexes everything.\n- Display progress as files are indexed (same output as the bulk index command).\n- Display a clear completion summary covering how many files and chunks were indexed.\n- If the store already has chunks (re-run scenario): the bulk index logic naturally skips already-indexed items and only processes missing ones. No special handling needed.\n- If indexing fails for some files: the retry/pending queue mechanism from Task 4-4 handles it. Inform the user that some files could not be indexed and were added to the pending queue for automatic retry on next use.\n\nIDEMPOTENCY:\n- The full setup flow must be safe to re-run at any point:\n - System config exists → display current settings, offer to skip or reconfigure\n - Project init exists → display status, offer to skip or reinitialise\n - Store has chunks → bulk index skips already-indexed, only processes new/missing\n - Everything is current → display a clear \"already set up\" message and exit.\n- This covers the design doc requirement (line 631): skips steps that are already done.\n- Also covers the interrupted-setup scenario (design doc finding #5, line 965): if setup was interrupted mid-indexing, re-running picks up where it left off via the pending queue.\n\nCLI INTEGRATION:\n- Register the setup command in the CLI dispatch from Task 3-1. Task 3-1 lists setup alongside other Phase 4+ commands with a \"not yet implemented\" placeholder — replace that placeholder with a real handler that calls the wizard flow from Task 7-1 followed by the initial indexing from this task.\n\nSTUB-TO-FULL UPGRADE PATH:\n- If the user previously ran setup in stub mode and now re-runs with an OpenAI provider:\n - System config is updated with the new provider settings.\n - The existing store has no vectors (keyword-only mode).\n - Inform the user that the previous setup was keyword-only and they should run knowledge rebuild to re-index with embeddings for full hybrid search.\n - Do NOT automatically rebuild — it is destructive and may take time. The user should run it explicitly.\n- This matches the design doc (line 329): upgrading from stub to full requires knowledge rebuild.\n\nAcceptance Criteria:\n- Setup wizard indexes all existing completed artifacts as its final step\n- Progress and summary output matches the bulk index command\n- Failed indexing files are logged to pending queue with a note to the user\n- Re-running setup on a fully configured project exits cleanly with an already-set-up message\n- Re-running setup after interrupted indexing picks up where it left off\n- Setup command registered in CLI dispatch, replacing the Task 3-1 not-yet-implemented placeholder\n- Stub-to-full upgrade detected and user informed about knowledge rebuild\n- npm run build succeeds\n\nTests:\n- Unit tests for idempotency logic (tests/scripts/test-knowledge-config.cjs — extend):\n - it detects fully configured state (system + project + indexed)\n - it detects partially configured state (system exists, project missing)\n - it detects empty store needing initial indexing\n- CLI dispatch test (tests/scripts/test-knowledge-cli.sh — extend):\n - it routes to setup command without error (non-interactive detection will abort, which is the expected behaviour in test)\n- Manual validation:\n - Run setup on a project with existing completed artifacts -\u003e verify all are indexed\n - Run setup again -\u003e verify it skips everything and exits cleanly\n - Run setup after interruption -\u003e verify pending queue items are processed\n\nEdge Cases:\n- Project with no completed work units — initial indexing indexes 0 files, which is correct. The knowledge base is ready but empty.\n- Project with hundreds of completed artifacts — initial indexing may take time (embedding API calls). Display progress so the user knows it is working.\n- Setup interrupted with Ctrl+C during indexing — indexed files are saved (each save is atomic), unindexed files go to pending queue. Re-run picks up.\n- System config points to a provider but the API key env var is not set — initial indexing will fail (provider cannot embed). The retry/pending queue catches this. Setup still completes — the project is initialised, indexing is pending.\n- Multiple projects sharing the same system config — this is normal. System config has provider/key, each project has its own .workflows/.knowledge/. Setup only modifies the current project.\n\nSpec Reference: knowledge-base/design.md — knowledge setup command (lines 626-633, initial indexing as final step, skip logic), Init/resumability finding #5 (line 965, interrupted setup, pending queue picks up), Upgrading from stub to full (line 329, requires rebuild)","transitions":[{"from":"open","to":"in_progress","at":"2026-04-19T16:37:13Z","auto":false},{"from":"in_progress","to":"done","at":"2026-04-19T16:44:49Z","auto":false}],"parent":"tick-2e511f","created":"2026-04-09T19:05:40Z","updated":"2026-04-19T16:44:49Z","closed":"2026-04-19T16:44:49Z"} -{"id":"tick-74a599","title":"Phase 8: Release Process","status":"open","priority":2,"refs":["knowledge-base-8"],"parent":"tick-cbbd13","created":"2026-04-09T19:05:44Z","updated":"2026-04-09T19:05:44Z"} -{"id":"tick-7f4725","title":"Release Script Build Integration","status":"open","priority":2,"type":"task","refs":["knowledge-base-8-1"],"description":"Problem: The knowledge CLI bundle (knowledge.cjs) must be committed to the repo before tagging because AGNTC installs from git tags with no build step. During Phases 1-7 development, the bundle was built and committed manually. For production releases, the build must be formalised into the release pipeline to prevent shipping stale bundles.\n\nSolution: Integrate the esbuild build step into the local release script so the bundle is always fresh when a release tag is created.\n\nOutcome: The release process automatically builds knowledge.cjs from source before tagging, ensuring every tagged release has an up-to-date bundle.\n\nDo:\n- Read the existing release script at the project root (./release) before editing. Study:\n 1. Where perform_release runs the dirty-tree gate (git status --porcelain check that aborts on any uncommitted changes)\n 2. Where perform_release currently stages/commits (note: this is gated inside an `if [[ \"$VERSION_STRATEGY\" != \"none\" ]]` block — the default \"none\" strategy currently performs no commit at all, only tag + push)\n 3. Where the annotated tag is created and pushed\n- The build step must sit AFTER the existing dirty-tree check and BEFORE the annotated tag is created. Placing it before the dirty-tree check would cause the gate to abort on a bundle rebuild; placing it after the tag would ship a stale bundle in the tagged commit.\n- The build step sequence:\n 1. Run `npm install` (ensure dev dependencies are available)\n 2. Run `npm run build` (esbuild bundles src/knowledge/ into skills/workflow-knowledge/scripts/knowledge.cjs)\n 3. Check whether the bundle changed (e.g., git diff on the bundle path)\n 4. If it changed: stage and commit the updated bundle. IMPORTANT: this commit must occur in ALL version strategies, including `VERSION_STRATEGY=\"none\"` — the existing `none` branch performs no commits, so this task is introducing a new commit point into a previously commit-free path. Do not hide the bundle commit inside the existing version-bump commit block; it is a distinct concern and must run regardless of version strategy.\n 5. If the bundle did not change: no commit needed, proceed.\n 6. Proceed with the existing tag + push flow.\n- Build failure (non-zero exit from `npm run build`) must abort the release — do not tag with a stale or missing bundle. Clean exit with a clear error.\n- The bundle commit is the only permitted mutation after the dirty-tree check passes. The dirty-tree check still protects against unrelated uncommitted user changes — the user's working tree must be clean entering the release, and the bundle commit is the only thing the release script itself adds on top.\n- DECISION POINT: the design doc (line 52) flags a choice between local build and CI build. This task implements the local-in-release-script path. Reasoning: the bundle must be committed BEFORE tagging (AGNTC installs from tags), and GitHub Actions runs AFTER tag push — too late to commit. Local build keeps the flow simple (build → commit → tag → push → CI validates). CI validates the committed bundle in Task 8-2 but does not rebuild it.\n- package.json already exists from Phase 1 (Task 1-1) with dev deps and build script. No changes needed to package.json.\n- node_modules/ is already gitignored from Phase 1. No changes needed.\n- The design doc also mentions (line 53) that GitHub releases may no longer be needed since AGNTC uses tags, not releases. Consider simplifying if trivial; defer if not. This is a note, not a requirement.\n\nAcceptance Criteria:\n- Release script runs `npm install` + `npm run build` between the dirty-tree check and the annotated tag\n- Updated bundle is committed before the tag is created\n- Bundle commit occurs in all version strategies, including `VERSION_STRATEGY=\"none\"` (previously commit-free)\n- Build failure aborts the release with a clear error message\n- Existing dirty-tree check still rejects unrelated uncommitted user changes\n- Existing release flow (version handling, tag, push) is preserved after the build step\n- Tagged releases contain the up-to-date knowledge.cjs bundle\n- node_modules/ remains gitignored\n\nTests:\n- Test file: tests/scripts/test-release-build.sh (shell test)\n- it runs the build step before tagging\n- it commits the updated bundle when the diff shows changes (in both default and `none` version strategies)\n- it skips the commit when the bundle is unchanged\n- it aborts release on build failure\n- it still rejects dirty working tree on entry\n- Manual validation:\n - Run release with modified source -\u003e verify bundle is rebuilt and committed before tag\n - Run release with no source changes -\u003e verify no unnecessary commit\n - Run release with `VERSION_STRATEGY=\"none\"` and modified source -\u003e verify bundle commit still happens\n\nEdge Cases:\n- First release after Phase 1 — bundle already exists and is committed. Build step rebuilds it (may or may not change depending on esbuild determinism). If unchanged, no commit.\n- npm install fails (network error, registry down) — abort release with clear error\n- Bundle size grows significantly in later phases — Task 1-1 sets a size threshold. If build produces a bundle over that, Task 1-1's test-knowledge-build.sh fails, which blocks CI in Task 8-2, which blocks the release.\n- Git working directory has uncommitted changes at script start — the existing dirty-tree gate aborts before any build step runs. User must commit or stash first.\n- Uncommitted bundle diff at script start — same as above, aborts on the dirty-tree gate. User handles manually.\n\nSpec Reference: knowledge-base/design.md — Release Process section (lines 45-54, build before tagging, bundle committed, local vs CI decision, GitHub releases simplification consideration), Build and Distribution section (lines 448-457, bundle committed to repo, release workflow change required). Script file to modify: ./release (perform_release function — dirty-tree check, VERSION_STRATEGY branch, tag creation).","parent":"tick-74a599","created":"2026-04-09T19:06:33Z","updated":"2026-04-10T20:47:18Z"} +{"id":"tick-74a599","title":"Phase 8: Release Process","status":"in_progress","priority":2,"refs":["knowledge-base-8"],"transitions":[{"from":"open","to":"in_progress","at":"2026-04-20T18:52:42Z","auto":true}],"parent":"tick-cbbd13","created":"2026-04-09T19:05:44Z","updated":"2026-04-20T18:52:42Z"} +{"id":"tick-7f4725","title":"Release Script Build Integration","status":"done","priority":2,"type":"task","refs":["knowledge-base-8-1"],"description":"Problem: The knowledge CLI bundle (knowledge.cjs) must be committed to the repo before tagging because AGNTC installs from git tags with no build step. During Phases 1-7 development, the bundle was built and committed manually. For production releases, the build must be formalised into the release pipeline to prevent shipping stale bundles.\n\nSolution: Integrate the esbuild build step into the local release script so the bundle is always fresh when a release tag is created.\n\nOutcome: The release process automatically builds knowledge.cjs from source before tagging, ensuring every tagged release has an up-to-date bundle.\n\nDo:\n- Read the existing release script at the project root (./release) before editing. Study:\n 1. Where perform_release runs the dirty-tree gate (git status --porcelain check that aborts on any uncommitted changes)\n 2. Where perform_release currently stages/commits (note: this is gated inside an `if [[ \"$VERSION_STRATEGY\" != \"none\" ]]` block — the default \"none\" strategy currently performs no commit at all, only tag + push)\n 3. Where the annotated tag is created and pushed\n- The build step must sit AFTER the existing dirty-tree check and BEFORE the annotated tag is created. Placing it before the dirty-tree check would cause the gate to abort on a bundle rebuild; placing it after the tag would ship a stale bundle in the tagged commit.\n- The build step sequence:\n 1. Run `npm install` (ensure dev dependencies are available)\n 2. Run `npm run build` (esbuild bundles src/knowledge/ into skills/workflow-knowledge/scripts/knowledge.cjs)\n 3. Check whether the bundle changed (e.g., git diff on the bundle path)\n 4. If it changed: stage and commit the updated bundle. IMPORTANT: this commit must occur in ALL version strategies, including `VERSION_STRATEGY=\"none\"` — the existing `none` branch performs no commits, so this task is introducing a new commit point into a previously commit-free path. Do not hide the bundle commit inside the existing version-bump commit block; it is a distinct concern and must run regardless of version strategy.\n 5. If the bundle did not change: no commit needed, proceed.\n 6. Proceed with the existing tag + push flow.\n- Build failure (non-zero exit from `npm run build`) must abort the release — do not tag with a stale or missing bundle. Clean exit with a clear error.\n- The bundle commit is the only permitted mutation after the dirty-tree check passes. The dirty-tree check still protects against unrelated uncommitted user changes — the user's working tree must be clean entering the release, and the bundle commit is the only thing the release script itself adds on top.\n- DECISION POINT: the design doc (line 52) flags a choice between local build and CI build. This task implements the local-in-release-script path. Reasoning: the bundle must be committed BEFORE tagging (AGNTC installs from tags), and GitHub Actions runs AFTER tag push — too late to commit. Local build keeps the flow simple (build → commit → tag → push → CI validates). CI validates the committed bundle in Task 8-2 but does not rebuild it.\n- package.json already exists from Phase 1 (Task 1-1) with dev deps and build script. No changes needed to package.json.\n- node_modules/ is already gitignored from Phase 1. No changes needed.\n- The design doc also mentions (line 53) that GitHub releases may no longer be needed since AGNTC uses tags, not releases. Consider simplifying if trivial; defer if not. This is a note, not a requirement.\n\nAcceptance Criteria:\n- Release script runs `npm install` + `npm run build` between the dirty-tree check and the annotated tag\n- Updated bundle is committed before the tag is created\n- Bundle commit occurs in all version strategies, including `VERSION_STRATEGY=\"none\"` (previously commit-free)\n- Build failure aborts the release with a clear error message\n- Existing dirty-tree check still rejects unrelated uncommitted user changes\n- Existing release flow (version handling, tag, push) is preserved after the build step\n- Tagged releases contain the up-to-date knowledge.cjs bundle\n- node_modules/ remains gitignored\n\nTests:\n- Test file: tests/scripts/test-release-build.sh (shell test)\n- it runs the build step before tagging\n- it commits the updated bundle when the diff shows changes (in both default and `none` version strategies)\n- it skips the commit when the bundle is unchanged\n- it aborts release on build failure\n- it still rejects dirty working tree on entry\n- Manual validation:\n - Run release with modified source -\u003e verify bundle is rebuilt and committed before tag\n - Run release with no source changes -\u003e verify no unnecessary commit\n - Run release with `VERSION_STRATEGY=\"none\"` and modified source -\u003e verify bundle commit still happens\n\nEdge Cases:\n- First release after Phase 1 — bundle already exists and is committed. Build step rebuilds it (may or may not change depending on esbuild determinism). If unchanged, no commit.\n- npm install fails (network error, registry down) — abort release with clear error\n- Bundle size grows significantly in later phases — Task 1-1 sets a size threshold. If build produces a bundle over that, Task 1-1's test-knowledge-build.sh fails, which blocks CI in Task 8-2, which blocks the release.\n- Git working directory has uncommitted changes at script start — the existing dirty-tree gate aborts before any build step runs. User must commit or stash first.\n- Uncommitted bundle diff at script start — same as above, aborts on the dirty-tree gate. User handles manually.\n\nSpec Reference: knowledge-base/design.md — Release Process section (lines 45-54, build before tagging, bundle committed, local vs CI decision, GitHub releases simplification consideration), Build and Distribution section (lines 448-457, bundle committed to repo, release workflow change required). Script file to modify: ./release (perform_release function — dirty-tree check, VERSION_STRATEGY branch, tag creation).","transitions":[{"from":"open","to":"in_progress","at":"2026-04-20T18:52:42Z","auto":false},{"from":"in_progress","to":"done","at":"2026-04-20T18:59:48Z","auto":false}],"parent":"tick-74a599","created":"2026-04-09T19:06:33Z","updated":"2026-04-20T18:59:48Z","closed":"2026-04-20T18:59:48Z"} {"id":"tick-de9b1a","title":"CI Test Pipeline Update","status":"open","priority":2,"type":"task","refs":["knowledge-base-8-2"],"description":"Problem: The GitHub Actions release workflow runs tests on tag push but currently only runs migration tests and discovery tests. The knowledge base adds new test files (Node .cjs and shell .sh) that must be included in the CI pipeline to prevent regressions from reaching tagged releases. Additionally, test-workflow-manifest.sh (which will gain manifest resolve tests from Task 3-2) is NOT currently run in CI since it doesn't match the existing glob patterns.\n\nSolution: Update the GitHub Actions release workflow to include all knowledge base test files alongside the existing test suite, explicitly include test-workflow-manifest.sh, and ensure the Node version is 18+ as required by Orama.\n\nOutcome: Every tagged release runs the full test suite including all knowledge base tests and the manifest resolve test, catching regressions before the release is published.\n\nDo:\n- Read the existing GitHub Actions workflow at .github/workflows/release.yml to understand the current test structure. The current pipeline (from the explore agent findings):\n - Run discovery tests: for test in tests/scripts/test-discovery-*.cjs; do node --test test; done\n - Run migration tests: for test in tests/scripts/test-migration-*.sh; do /bin/bash test; done\n\n- Verify and update the Node version. Design doc line 453 requires Node 18 minimum (Orama requirement), Node 20+ recommended. Check the workflow's node-version setting. If it uses an older version or is unspecified, update it to 20.\n\n- Add npm install step BEFORE the test runs. Unit tests (test-knowledge-embeddings.cjs, test-knowledge-store.cjs, test-knowledge-chunker.cjs, test-knowledge-config.cjs) import from src/knowledge/ source files, which require @orama/orama and @msgpack/msgpack from node_modules. npm install provides these dev dependencies.\n\n- DO NOT add npm run build in CI. The bundle is committed before tagging (per Task 8-1's local build decision). CI validates the committed bundle — it does not rebuild. Rebuilding in CI could produce a different bundle if esbuild has any non-determinism, which would defeat the purpose of committing the bundle before tagging. The integration test (Task 1-5) imports from the committed bundle directly.\n\n- Add knowledge base test runs in the same pattern as existing tests:\n\n Knowledge Node tests:\n for test in tests/scripts/test-knowledge-*.cjs; do\n node --test \"$test\"\n done\n This glob covers all Node test files created across Phases 1-4 (embeddings, store, chunker, config, integration, retry, openai).\n\n Knowledge shell tests:\n for test in tests/scripts/test-knowledge-*.sh; do\n /bin/bash \"$test\"\n done\n This glob covers all shell test files created across Phases 1-4 (build, cli).\n\n- EXPLICITLY include test-workflow-manifest.sh. This file exists (pre-knowledge-base) and will gain manifest resolve tests from Task 3-2. It does NOT match test-discovery-*.cjs or test-migration-*.sh globs, so it is currently NOT run in CI. Add it as a direct invocation:\n /bin/bash tests/scripts/test-workflow-manifest.sh\n This is a pre-existing CI gap that Phase 8 is closing.\n\n- The test pipeline ordering should be:\n 1. checkout (existing)\n 2. setup-node with node-version: 20 (verify/update)\n 3. npm install (new — for unit test dev deps)\n 4. Run migration tests (existing)\n 5. Run discovery tests (existing)\n 6. Run test-workflow-manifest.sh (new — explicit)\n 7. Run knowledge Node tests (new)\n 8. Run knowledge shell tests (new)\n\n- The OpenAI integration test (test-knowledge-openai-integration.cjs) is opt-in — it only runs when OPENAI_API_KEY env var is present. In CI, this env var is NOT set by default (no API keys in CI). The test skips itself. If the repo owner wants to run it in CI, they can add the secret to GitHub Actions — but this is optional, not required.\n\nAcceptance Criteria:\n- GitHub Actions workflow uses Node 20+ (verified or updated)\n- GitHub Actions workflow runs npm install before tests (for unit test dev deps)\n- GitHub Actions workflow does NOT run npm run build (bundle is already committed per Task 8-1)\n- GitHub Actions workflow runs all test-knowledge-*.cjs tests\n- GitHub Actions workflow runs all test-knowledge-*.sh tests\n- GitHub Actions workflow explicitly runs tests/scripts/test-workflow-manifest.sh\n- All tests pass in CI (the integration test skips without API key)\n- Existing migration and discovery tests continue to run\n- Test failure blocks the release (non-zero exit fails the workflow)\n\nTests:\n- No separate test for this task — the CI pipeline IS the test. Validation:\n - Push a tag and verify the GitHub Actions workflow runs all knowledge tests + test-workflow-manifest.sh\n - Verify the integration test is skipped (no OPENAI_API_KEY in CI)\n - Verify a test failure would block the release\n\nEdge Cases:\n- npm install in CI takes time — consider caching node_modules across runs (GitHub Actions cache action). Not required but improves CI speed.\n- Knowledge shell tests may depend on node being in PATH to run the bundle — verify the CI environment has node available for shell test subprocesses.\n- Test file ordering — tests should be independent and not depend on execution order. If any knowledge test depends on state from another test, that is a bug in the test.\n- Committed bundle mismatch — if the committed bundle is stale (developer forgot to rebuild before tagging), CI tests against it will either pass (if the bundle is still functionally correct) or fail (if tests assume newer behavior). This is a content issue, not a CI configuration issue. Task 8-1's build-before-tag flow prevents this.\n\nSpec Reference: knowledge-base/design.md — Testing Strategy section (lines 463-475, test location conventions, CLI command tests against built bundle), Build and Distribution section (lines 448-457, bundle committed to repo, release workflow needs build step — implemented in Task 8-1), Node version requirement (line 453)","parent":"tick-74a599","created":"2026-04-09T19:08:28Z","updated":"2026-04-10T15:29:37Z"} diff --git a/release b/release index 15c9bf89e..b0a2625ed 100755 --- a/release +++ b/release @@ -257,6 +257,30 @@ perform_release() { exit 1 fi + # Rebuild the knowledge CLI bundle so every tagged release ships a fresh + # skills/workflow-knowledge/scripts/knowledge.cjs. AGNTC installs from tags + # with no build step, so the bundle must be committed before the tag. + echo "Installing build dependencies..." + if ! npm install; then + echo "Error: npm install failed. Aborting release." >&2 + exit 1 + fi + + echo "Building knowledge bundle..." + if ! npm run build; then + echo "Error: npm run build failed. Refusing to tag with a stale or missing bundle." >&2 + exit 1 + fi + + local bundle_path="skills/workflow-knowledge/scripts/knowledge.cjs" + if ! git diff --quiet -- "$bundle_path"; then + echo "Knowledge bundle changed — committing." + git add "$bundle_path" + git commit -m "chore(release): rebuild knowledge bundle for v${new_version}" + else + echo "Knowledge bundle unchanged — no commit needed." + fi + # Generate commit message local commit_message if $skip_ai; then diff --git a/tests/scripts/test-release-build.sh b/tests/scripts/test-release-build.sh new file mode 100755 index 000000000..afc4d238b --- /dev/null +++ b/tests/scripts/test-release-build.sh @@ -0,0 +1,295 @@ +#!/bin/bash +# Tests for the release-script build integration (knowledge-base phase 8, task 8-1). +# Run: bash tests/scripts/test-release-build.sh + +set -eo pipefail + +SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" +REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" +RELEASE_SCRIPT="$REPO_DIR/release" + +PASS=0 +FAIL=0 + +assert_eq() { + local label="$1" expected="$2" actual="$3" + if [ "$expected" = "$actual" ]; then + PASS=$((PASS + 1)) + else + FAIL=$((FAIL + 1)) + echo "FAIL: $label" + echo " expected: $expected" + echo " actual: $actual" + fi +} + +# Piping `git log ... | grep -q` under `set -o pipefail` causes SIGPIPE (141) +# when grep closes its stdin early. Capture first, then match. +file_contains() { + local pattern="$1" file="$2" + local content + content=$(cat "$file" 2>/dev/null || true) + case "$content" in + *"$pattern"*) echo true ;; + *) echo false ;; + esac +} + +git_log_contains() { + local pattern="$1" + local log + log=$(cd "$REPO" && git log --oneline 2>/dev/null || true) + case "$log" in + *"$pattern"*) echo true ;; + *) echo false ;; + esac +} + +# Create a self-contained throwaway git repo with a committed bundle, +# npm/git stubs, and a function-only copy of the real release script +# (main "$@" stripped so sourcing does not execute a release). +setup() { + TEST_DIR=$(mktemp -d "${TMPDIR:-/tmp}/release-build-test.XXXXXX") + REPO="$TEST_DIR/repo" + STUBS="$TEST_DIR/stubs" + CALLS="$TEST_DIR/calls.log" + RELEASE_FUNCS="$TEST_DIR/release-funcs.sh" + mkdir -p "$REPO" "$STUBS" + + cd "$REPO" + git init -q + git config user.email "test@example.com" + git config user.name "Test" + git config commit.gpgsign false + + mkdir -p skills/workflow-knowledge/scripts + echo "// initial bundle" > skills/workflow-knowledge/scripts/knowledge.cjs + echo '{"name":"stub","version":"0.0.0"}' > package.json + echo "0.0.0" > release.txt + git add . + git commit -q -m "initial" + + # Stub npm: install is a no-op; build optionally fails or mutates the bundle + # based on env vars set by the individual test. + cat > "$STUBS/npm" << 'NPMEOF' +#!/bin/bash +echo "npm $*" >> "$CALLS" +case "$1" in + install) + if [ "${STUB_NPM_INSTALL_FAIL:-0}" = "1" ]; then + echo "stub: npm install failed" >&2 + exit 1 + fi + exit 0 + ;; + run) + if [ "$2" = "build" ]; then + if [ "${STUB_NPM_BUILD_FAIL:-0}" = "1" ]; then + echo "stub: npm run build failed" >&2 + exit 1 + fi + if [ "${STUB_NPM_BUILD_MODIFIES:-0}" = "1" ]; then + echo "// rebuilt by stub $(date +%s%N)" > skills/workflow-knowledge/scripts/knowledge.cjs + fi + exit 0 + fi + exit 0 + ;; +esac +exit 0 +NPMEOF + chmod +x "$STUBS/npm" + + # Strip the main invocation so sourcing defines functions without running. + grep -v '^main "\$@"$' "$RELEASE_SCRIPT" > "$RELEASE_FUNCS" + + export PATH="$STUBS:$PATH" + export CALLS +} + +teardown() { + cd "$REPO_DIR" + rm -rf "$TEST_DIR" + unset STUB_NPM_INSTALL_FAIL STUB_NPM_BUILD_FAIL STUB_NPM_BUILD_MODIFIES +} + +# Run perform_release in a subshell with git tag/push stubbed so tests never +# tag or push. git add/commit pass through to the real repo so we can observe +# whether a bundle commit lands. +run_release() { + local version="$1" current="$2" strategy="${3:-none}" + ( + cd "$REPO" + source "$RELEASE_FUNCS" + VERSION_STRATEGY="$strategy" + + update_version_file() { :; } + generate_release_commit_message() { echo "🔖 Release v$1"; } + + git() { + case "$1" in + tag|push) + echo "git $*" >> "$CALLS" + return 0 + ;; + *) + command git "$@" + ;; + esac + } + + perform_release "$version" "$current" "true" + ) > "$TEST_DIR/out.log" 2>&1 +} + +# --- Test 1: happy path — bundle changes, bundle commit lands, tag called --- +test_happy_path_bundle_changes() { + setup + export STUB_NPM_BUILD_MODIFIES=1 + + local rc=0 + run_release "1.0.0" "0.0.0" "none" || rc=$? + + assert_eq "perform_release exits 0 on clean build" "0" "$rc" + assert_eq "npm install was invoked" "true" "$(file_contains 'npm install' "$CALLS")" + assert_eq "npm run build was invoked" "true" "$(file_contains 'npm run build' "$CALLS")" + assert_eq "bundle commit was created" "true" "$(git_log_contains 'rebuild knowledge bundle for v1.0.0')" + assert_eq "tag was called after build" "true" "$(file_contains 'git tag' "$CALLS")" + + teardown +} + +# --- Test 2: bundle unchanged — no bundle commit --- +test_bundle_unchanged_skips_commit() { + setup + # STUB_NPM_BUILD_MODIFIES unset → build does not touch the bundle + + local rc=0 + run_release "1.0.0" "0.0.0" "none" || rc=$? + + assert_eq "perform_release exits 0 when bundle unchanged" "0" "$rc" + assert_eq "no bundle commit was created" "false" "$(git_log_contains 'rebuild knowledge bundle')" + assert_eq "tag was still called" "true" "$(file_contains 'git tag' "$CALLS")" + + teardown +} + +# --- Test 3: VERSION_STRATEGY=none still commits bundle when it changes --- +test_version_none_commits_bundle() { + setup + export STUB_NPM_BUILD_MODIFIES=1 + + local rc=0 + run_release "1.2.3" "0.0.0" "none" || rc=$? + + assert_eq "perform_release exits 0 in none strategy" "0" "$rc" + assert_eq "bundle commit occurs even with VERSION_STRATEGY=none" "true" \ + "$(git_log_contains 'rebuild knowledge bundle for v1.2.3')" + + teardown +} + +# --- Test 4: VERSION_STRATEGY=file also commits bundle when it changes --- +test_version_file_commits_bundle() { + setup + export STUB_NPM_BUILD_MODIFIES=1 + + local rc=0 + run_release "1.2.3" "0.0.0" "file" || rc=$? + + assert_eq "perform_release exits 0 in file strategy" "0" "$rc" + assert_eq "bundle commit occurs with VERSION_STRATEGY=file" "true" \ + "$(git_log_contains 'rebuild knowledge bundle for v1.2.3')" + + teardown +} + +# --- Test 5: build failure aborts before tagging --- +test_build_failure_aborts() { + setup + export STUB_NPM_BUILD_FAIL=1 + + local rc=0 + run_release "1.0.0" "0.0.0" "none" || rc=$? + + assert_eq "perform_release exits non-zero on build failure" "true" \ + "$([ "$rc" -ne 0 ] && echo true || echo false)" + assert_eq "tag was NOT called after build failure" "false" "$(file_contains 'git tag' "$CALLS")" + assert_eq "error message mentions build failure" "true" \ + "$(file_contains 'npm run build failed' "$TEST_DIR/out.log")" + + teardown +} + +# --- Test 6: npm install failure aborts --- +test_install_failure_aborts() { + setup + export STUB_NPM_INSTALL_FAIL=1 + + local rc=0 + run_release "1.0.0" "0.0.0" "none" || rc=$? + + assert_eq "perform_release exits non-zero on install failure" "true" \ + "$([ "$rc" -ne 0 ] && echo true || echo false)" + assert_eq "npm run build was NOT invoked after install failure" "false" \ + "$(file_contains 'npm run build' "$CALLS")" + assert_eq "tag was NOT called after install failure" "false" "$(file_contains 'git tag' "$CALLS")" + + teardown +} + +# --- Test 7: dirty working tree gate still fires before build --- +test_dirty_tree_gate_fires() { + setup + # Introduce an unrelated uncommitted change + echo "dirty" > "$REPO/README.md" + + local rc=0 + run_release "1.0.0" "0.0.0" "none" || rc=$? + + assert_eq "perform_release exits non-zero on dirty tree" "true" \ + "$([ "$rc" -ne 0 ] && echo true || echo false)" + assert_eq "dirty-tree error message emitted" "true" \ + "$(file_contains 'working directory is dirty' "$TEST_DIR/out.log")" + assert_eq "npm was NOT invoked when tree dirty" "false" "$(file_contains 'npm' "$CALLS")" + + teardown +} + +# --- Test 8: build runs before tag in the call ordering --- +test_build_runs_before_tag() { + setup + export STUB_NPM_BUILD_MODIFIES=1 + + run_release "1.0.0" "0.0.0" "none" + + # Read CALLS log, find line numbers via awk to avoid SIGPIPE from grep -q + local calls_content build_line tag_line + calls_content=$(cat "$CALLS") + build_line=$(echo "$calls_content" | awk '/^npm run build$/ {print NR; exit}') + tag_line=$(echo "$calls_content" | awk '/^git tag/ {print NR; exit}') + + assert_eq "both build and tag recorded" "true" \ + "$([ -n "$build_line" ] && [ -n "$tag_line" ] && echo true || echo false)" + assert_eq "build runs before tag" "true" \ + "$([ -n "$build_line" ] && [ -n "$tag_line" ] && [ "$build_line" -lt "$tag_line" ] && echo true || echo false)" + + teardown +} + +# --- Run all tests --- +echo "Running release-build integration tests..." +echo "" + +test_happy_path_bundle_changes +test_bundle_unchanged_skips_commit +test_version_none_commits_bundle +test_version_file_commits_bundle +test_build_failure_aborts +test_install_failure_aborts +test_dirty_tree_gate_fires +test_build_runs_before_tag + +echo "" +echo "Results: $PASS passed, $FAIL failed" +[ "$FAIL" -eq 0 ] || exit 1 From d0d035b045da384242837e482a71b95c64d37f6e Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 20:05:12 +0100 Subject: [PATCH 02/78] ci(release): run knowledge + workflow-manifest tests on tag push MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Adds npm install before the test step (unit tests need dev deps from node_modules). Extends the test job with explicit test-workflow-manifest.sh plus globbed test-knowledge-*.cjs and test-knowledge-*.sh suites. Does not run npm run build — the committed bundle is authoritative; the release script rebuilds and commits it pre-tag. Refs tick-de9b1a. --- .github/workflows/release.yml | 24 ++++++++++++++++++++++-- .tick/tasks.jsonl | 6 +++--- 2 files changed, 25 insertions(+), 5 deletions(-) diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 766108e65..4cad63f19 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -20,6 +20,16 @@ jobs: with: node-version: '20' + - name: Install dependencies + run: npm install + + - name: Run migration tests + run: | + for test in tests/scripts/test-migration-*.sh; do + echo "=== Running $test ===" + /bin/bash "$test" + done + - name: Run discovery tests run: | for test in tests/scripts/test-discovery-*.cjs; do @@ -27,9 +37,19 @@ jobs: node --test "$test" done - - name: Run migration tests + - name: Run workflow-manifest tests + run: /bin/bash tests/scripts/test-workflow-manifest.sh + + - name: Run knowledge Node tests run: | - for test in tests/scripts/test-migration-*.sh; do + for test in tests/scripts/test-knowledge-*.cjs; do + echo "=== Running $test ===" + node --test "$test" + done + + - name: Run knowledge shell tests + run: | + for test in tests/scripts/test-knowledge-*.sh; do echo "=== Running $test ===" /bin/bash "$test" done diff --git a/.tick/tasks.jsonl b/.tick/tasks.jsonl index 7c8e31359..7583e4889 100644 --- a/.tick/tasks.jsonl +++ b/.tick/tasks.jsonl @@ -1,4 +1,4 @@ -{"id":"tick-cbbd13","title":"Knowledge Base","status":"in_progress","priority":2,"refs":["knowledge-base"],"transitions":[{"from":"open","to":"in_progress","at":"2026-04-10T21:02:52Z","auto":true}],"created":"2026-04-07T19:01:36Z","updated":"2026-04-10T21:02:52Z"} +{"id":"tick-cbbd13","title":"Knowledge Base","status":"done","priority":2,"refs":["knowledge-base"],"transitions":[{"from":"open","to":"in_progress","at":"2026-04-10T21:02:52Z","auto":true},{"from":"in_progress","to":"done","at":"2026-04-20T19:05:06Z","auto":true}],"created":"2026-04-07T19:01:36Z","updated":"2026-04-20T19:05:06Z","closed":"2026-04-20T19:05:06Z"} {"id":"tick-16f12a","title":"Phase 1: Build Pipeline + Store Fundamentals","status":"done","priority":2,"refs":["knowledge-base-1"],"transitions":[{"from":"open","to":"in_progress","at":"2026-04-10T21:02:52Z","auto":true},{"from":"in_progress","to":"done","at":"2026-04-10T21:15:09Z","auto":true}],"parent":"tick-cbbd13","created":"2026-04-07T19:01:42Z","updated":"2026-04-10T21:15:09Z","closed":"2026-04-10T21:15:09Z"} {"id":"tick-0fe119","title":"Project Scaffolding + esbuild Validation","status":"done","priority":2,"type":"task","refs":["knowledge-base-1-1"],"description":"Problem: The knowledge base CLI requires a build pipeline. The project currently has no npm dependencies or build tooling. esbuild bundling with Orama + MsgPack is the highest implementation risk per the design doc — if it doesn't work, the entire architecture needs rethinking. This must be validated first.\n\nSolution: Create project scaffolding (package.json, directory structure) and validate that esbuild bundles Orama and MsgPack into a single CJS file that runs correctly.\n\nOutcome: A working build pipeline producing skills/workflow-knowledge/scripts/knowledge.cjs from src/knowledge/index.js. Design doc estimates ~110-120KB minified; threshold set at 150KB to allow headroom for application code while catching unexpected bloat.\n\nDo:\n- Create package.json at project root with devDependencies: @orama/orama, @msgpack/msgpack, esbuild. Pin exact versions to avoid API drift (design doc: verify exact API shape against targeted Orama version at implementation time).\n- Add to .gitignore: node_modules/, .workflows/.knowledge/store.msp\n- Create directory structure:\n - src/knowledge/ (source files — NOT copied by AGNTC, lives outside skills/)\n - build/ (build config — NOT copied by AGNTC)\n - skills/workflow-knowledge/scripts/ (bundled output destination — IS copied by AGNTC)\n - skills/workflow-knowledge/chunking/ (phase configs directory, populated in Phase 2)\n- Create build/knowledge.build.js — esbuild config using: --bundle --platform=node --format=cjs --minify. Entry: src/knowledge/index.js. Output: skills/workflow-knowledge/scripts/knowledge.cjs\n- Create src/knowledge/index.js as the entry point that will grow into the full knowledge CLI. Structure it as a module with exports (not a throwaway script). For now it should import @orama/orama (create, insert, search) and @msgpack/msgpack (encode, decode), perform a trivial round-trip with each library, and exit cleanly. Both imports must be actively used — esbuild tree-shaking will remove unused imports. Subsequent tasks in this phase will replace the trivial operations with real store, provider, and persistence code.\n- Add a build script to package.json: node build/knowledge.build.js\n- The bundled knowledge.cjs MUST be committed to the repo (not gitignored). AGNTC installs from git tags with no build step — the bundle must be present in the tree at tag time. During development, rebuild and commit the bundle when source changes.\n- Verify __dirname in bundled output resolves to the script directory. esbuild preserves __dirname as-is in --platform=node --format=cjs output (verified in design doc). The knowledge CLI uses this at runtime to find chunking configs via path.join(__dirname, '..', 'chunking').\n- Plain JS, not TypeScript — matches the existing manifest.cjs convention.\n- Minimum Node 18 required by Orama. Node 20+ recommended (Node 18 fetch emits ExperimentalWarning to stderr — cosmetic, not functional).\n\nAcceptance Criteria:\n- npm install \u0026\u0026 npm run build succeeds without errors\n- Bundle exists at skills/workflow-knowledge/scripts/knowledge.cjs and is committed to git\n- Bundle size is under 150KB (design doc estimates ~110-120KB minified — 150KB provides ~25% headroom for growth across Phase 1 tasks while catching unexpected bloat)\n- node skills/workflow-knowledge/scripts/knowledge.cjs runs and exits cleanly\n- __dirname in the bundle resolves to skills/workflow-knowledge/scripts/, not src/knowledge/\n- node_modules/ and .workflows/.knowledge/store.msp are in .gitignore (but knowledge.cjs is NOT)\n- src/knowledge/index.js is structured as a module with exports, not a disposable script\n\nTests:\n- Test file: tests/scripts/test-knowledge-build.sh (shell test following existing migration test conventions — PASS/FAIL counters, assert_eq function, summary line)\n- it builds without errors (npm run build exits 0)\n- it produces a bundle under 150KB (stat the output file)\n- it runs and exits with code 0 (node knowledge.cjs)\n- __dirname resolves to the script directory, not the source directory (run the bundle, capture stdout, assert path contains skills/workflow-knowledge/scripts)\n\nEdge Cases:\n- esbuild tree-shaking removes imports that appear unused — the minimal index.js must actively use both libraries in its trivial operations\n- If bundle exceeds 150KB at Task 1-1 (trivial code), investigate — libraries alone are ~90KB per design doc, so Task 1-1's minimal bundle should be ~90-100KB. Significant deviation means esbuild is including more than expected.\n- Both @orama/orama and @msgpack/msgpack are zero-dependency pure JS — no native modules, no node-gyp. If npm install fails, it is not a dependency issue.\n- NOTE: later Phase 1 tasks (1-3, 1-4, 1-5) add real store/persistence/locking code and the bundle will grow. If growth pushes past 150KB during Phase 1, re-evaluate the threshold — do not silently raise it without investigating what's being included.\n\nSpec Reference: knowledge-base/design.md — Build \u0026 Distribution section (bundle estimated at ~110-120KB minified, line 208 and 446) and Runtime config file discovery subsection (line 461)","transitions":[{"from":"open","to":"in_progress","at":"2026-04-10T21:02:52Z","auto":false},{"from":"in_progress","to":"done","at":"2026-04-10T21:06:00Z","auto":false}],"parent":"tick-16f12a","created":"2026-04-07T19:02:32Z","updated":"2026-04-10T21:06:00Z","closed":"2026-04-10T21:06:00Z"} {"id":"tick-cca624","title":"Embedding Provider Interface + StubProvider","status":"done","priority":2,"type":"task","refs":["knowledge-base-1-2"],"description":"Problem: The knowledge base needs an embedding provider to convert text into vectors for semantic search. All subsequent tasks in this phase (store, persistence, integration test) depend on having a provider interface to program against. The real OpenAI provider comes in Phase 4, but testing needs a deterministic provider now that produces consistent vectors without API calls.\n\nSolution: Define the KnowledgeProvider interface and implement a StubProvider that generates deterministic vectors by hashing input text.\n\nOutcome: A provider interface that the store, CLI, and all tests program against, plus a StubProvider that enables the entire test suite without external dependencies.\n\nTERMINOLOGY DISAMBIGUATION (important — the design doc uses two similar terms):\n- StubProvider (this task) — a TEST provider that returns deterministic fake vectors via hash. ALWAYS returns vectors. Configured via provider: stub in config. Used for development and testing only. NOT a production mode.\n- Stub mode / keyword-only mode (design doc lines 322-331) — a PRODUCTION degraded mode triggered when NO provider is configured or no API key is available. Stores documents WITHOUT vectors (omits the vector field). Uses BM25 fulltext search only. Triggered by the ABSENCE of a provider, not by provider: stub.\nThese are DIFFERENT concepts that share a similar name. StubProvider is a first-class provider implementation for testing. Stub mode is the absence of any provider in production. Do not conflate them.\n\nDo:\n- Create src/knowledge/embeddings.js exporting the interface contract and StubProvider implementation.\n- Define KnowledgeProvider interface with four methods/accessors:\n - embed(text) -\u003e vector (array of floats, length matching dimensions())\n - embedBatch(texts[]) -\u003e vectors[] (array of vectors, one per input)\n - dimensions() -\u003e number (the vector dimensionality this provider produces)\n - model() -\u003e string (a stable identifier for this provider's model, used by Task 3-3 to write into metadata.json and by Task 3-4 / Task 4-6 for mismatch detection). Every concrete provider must return a stable, non-empty string.\n- Implement StubProvider:\n - Constructor accepts optional dimensions parameter. Implementer picks a sensible default (e.g., 128 for smaller/faster tests, or 1536 to match production). Downstream tasks must not assume a specific default.\n - embed(text): hash the input string deterministically to produce a float vector of length dimensions(). Does not need to be cryptographically strong — consistency and differentiation matter, not quality.\n - embedBatch(texts): maps over embed() for each input. No batching optimisation needed — this is for testing.\n - dimensions(): returns the configured dimension count.\n - model(): returns a stable identifier string for the stub provider (e.g., \"stub\"). This value is written to metadata.json by Task 3-3 and compared on mismatch checks — it must never be null, undefined, or empty.\n - CRITICAL: never return null for vectors. Orama crashes when a vector field is null. Return a real vector array from embed/embedBatch. Production keyword-only mode (no provider configured at all) is handled at the calling layer by omitting the vector field — that is NOT StubProvider's responsibility. StubProvider is a real provider that always returns vectors.\n - Same input text MUST always produce the same vector (deterministic).\n - Different input text MUST produce different vectors (distinguishable).\n- The provider dimensions and the Orama schema dimensions must match. Task 1-3 (store creation) will read dimensions from the provider. Production uses whatever the OpenAI provider (Phase 4) exposes — typically 1536 for text-embedding-3-small.\n- Rebuild after implementation: npm run build to verify embeddings.js bundles into knowledge.cjs correctly.\n\nAcceptance Criteria:\n- embed('hello') returns an array of floats with length equal to dimensions()\n- embed('hello') called twice returns identical vectors\n- embed('hello') and embed('world') return different vectors\n- embedBatch(['a', 'b', 'c']) returns exactly 3 vectors, each with correct dimensions\n- dimensions() returns the configured value\n- model() returns a stable, non-empty string\n- embed() never returns null or undefined — always a real array\n- Module exports both the StubProvider class and a clear description of the interface contract (JSDoc or comments documenting what providers must implement, including the model() requirement)\n- JSDoc/comments explicitly note that StubProvider is for testing, and that production keyword-only mode is a separate concept (no provider configured, handled by the caller)\n- npm run build succeeds with the new module included\n\nTests:\n- Test file: tests/scripts/test-knowledge-embeddings.cjs (Node test using node:test module and assert, following existing discovery test conventions — describe/it blocks, beforeEach/afterEach if needed)\n- it returns a vector of correct length for a single string\n- it returns identical vectors for identical input (determinism)\n- it returns different vectors for different input (differentiation)\n- it handles embedBatch with multiple inputs correctly\n- it respects custom dimensions parameter\n- it returns a stable non-empty model() identifier\n- it never returns null (explicit assertion)\n- it handles empty string input without error\n- it handles very long string input without error\n\nEdge Cases:\n- Empty string input — must still return a valid vector, not crash\n- Very long input — must produce a vector of correct length regardless of input size\n- Unicode input — must handle non-ASCII characters\n- embedBatch with empty array — should return empty array\n- embedBatch with single item — should return array of one vector, identical to calling embed() directly\n\nSpec Reference: knowledge-base/design.md — Embedding Provider section (KnowledgeProvider interface, embed/embedBatch/dimensions methods), Testing Strategy section (StubProvider description, mock provider usage), Knowledge Base is Required Infrastructure section (lines 322-331, stub mode / keyword-only as the distinct production concept), Provider mismatch detection finding #10 (line 982, requires provider/model/dimensions stored in metadata.json — every provider must expose all three)","transitions":[{"from":"open","to":"in_progress","at":"2026-04-10T21:06:10Z","auto":false},{"from":"in_progress","to":"done","at":"2026-04-10T21:07:23Z","auto":false}],"parent":"tick-16f12a","created":"2026-04-07T19:19:51Z","updated":"2026-04-10T21:07:23Z","closed":"2026-04-10T21:07:23Z"} @@ -32,6 +32,6 @@ {"id":"tick-2e511f","title":"Phase 7: Setup Wizard","status":"done","priority":2,"refs":["knowledge-base-7"],"transitions":[{"from":"open","to":"in_progress","at":"2026-04-19T16:28:36Z","auto":true},{"from":"in_progress","to":"done","at":"2026-04-19T16:44:49Z","auto":true}],"parent":"tick-cbbd13","created":"2026-04-09T19:04:09Z","updated":"2026-04-19T16:44:49Z","closed":"2026-04-19T16:44:49Z"} {"id":"tick-78c1c7","title":"Setup Wizard: System Config + Project Init + Stub Mode","status":"done","priority":2,"type":"task","refs":["knowledge-base-7-1"],"description":"Problem: Users need a single entry point to configure the knowledge base for the first time. This involves system-level configuration (API keys, provider choice) that lives in the user's home directory and project-level initialisation that lives in .workflows/. Both must be handled in one flow so the user doesn't need to know the internal structure.\n\nSolution: Implement the knowledge setup command as an interactive wizard using Node's readline interface, handling system config, project init, and stub mode in one guided flow.\n\nOutcome: A user can run one command and have a fully configured knowledge base ready for use, with clear prompts at each step and graceful handling of partial or existing configuration.\n\nDo:\n- Implement the setup command handler in the CLI (invoked by Task 3-1 dispatch).\n- Invocation: knowledge setup (no arguments)\n- HUMAN-ONLY — uses interactive prompts throughout via Node readline interface (process.stdin/process.stdout). Claude cannot handle interactive terminals — this is the natural protection against accidental invocation (design doc line 632).\n\nSTEP 1: SYSTEM CONFIG (~/.config/workflows/config.json):\n- Check if system config already exists.\n - If it exists: read it, display current settings, ask if the user wants to reconfigure or skip. If skip, proceed to Step 2.\n - If it does not exist: create ~/.config/workflows/ directory if needed.\n- Prompt for provider:\n Which embedding provider? (openai / skip)\n - openai: proceed with OpenAI configuration\n - skip: stub mode (keyword-only search, no embeddings). Write config with no provider field. Display clear message about limitations. Proceed to Step 2.\n- If openai selected:\n - Prompt for model (default: text-embedding-3-small):\n Embedding model [text-embedding-3-small]:\n - Prompt for dimensions (default: 1536):\n Vector dimensions [1536]:\n - Prompt for API key env var name (default: OPENAI_API_KEY):\n API key environment variable [OPENAI_API_KEY]:\n - Check if the env var is set in the current environment:\n - If set: validate with a test embed call — embed a short test string and verify a vector is returned. If validation fails, display the error and ask the user to fix it or continue anyway.\n - If not set: warn the user and explain they need to set this env var in their shell profile before using the knowledge base. Do not block — they may be setting it up for later.\n- Write system config to ~/.config/workflows/config.json:\n { knowledge: { provider, model, dimensions, api_key_env, similarity_threshold: 0.8, decay_months: 6 } }\n- For stub mode (skip): write minimal config:\n { knowledge: { similarity_threshold: 0.8, decay_months: 6 } }\n\nSTEP 2: PROJECT INIT (.workflows/.knowledge/):\n- Check if project knowledge base directory already exists with config.json and store.msp.\n - If fully initialised: display status and ask to skip or reinitialise. If skip, proceed to Step 3.\n - If partially initialised (directory exists but missing files): complete the missing pieces.\n - If not initialised: create from scratch.\n- Create .workflows/.knowledge/ directory.\n- Write .workflows/.knowledge/config.json — project-level config. By default this is empty (inherits everything from system config):\n { knowledge: {} }\n The user can customise project-level overrides later by editing this file.\n- Create an empty Orama store and save it to .workflows/.knowledge/store.msp using createStore + saveStore from Phase 1. Use the dimensions from the resolved config (system + project merge).\n- Write .workflows/.knowledge/metadata.json with the provider/model/dimensions from the resolved config (or empty provider fields for stub mode).\n\nREADLINE INTERFACE:\n- Use Node built-in readline module (require('readline')).\n- Create interface with input: process.stdin, output: process.stdout.\n- Use rl.question() for prompts with defaults shown in brackets.\n- Close the interface when done.\n- If stdin is not a TTY (piped input, non-interactive environment): detect with process.stdin.isTTY and abort with message: knowledge setup requires an interactive terminal. Run it directly, not through Claude.\n\nAcceptance Criteria:\n- knowledge setup prompts for provider, model, dimensions, API key env var\n- System config is written to ~/.config/workflows/config.json\n- Project knowledge base is initialised at .workflows/.knowledge/ with config.json, store.msp, metadata.json\n- Test embed call validates the API key when configured\n- Stub mode writes config without provider, displays limitation message\n- Existing system config is detected and can be skipped or reconfigured\n- Existing project init is detected and can be skipped\n- Non-interactive terminal is detected and aborts with clear message\n- npm run build succeeds with the setup command included\n\nTests:\n- No automated tests for the interactive flow — it is inherently human-driven.\n- Unit tests for the non-interactive parts (tests/scripts/test-knowledge-config.cjs — extend from Task 3-1):\n - it creates a valid system config object from provider choices\n - it creates a valid stub-mode config object\n - it detects existing system config correctly\n - it detects existing project init correctly\n - it creates the project directory structure correctly\n\nEdge Cases:\n- ~/.config/workflows/ directory does not exist — create it (mkdir -p equivalent with { recursive: true })\n- .workflows/ directory does not exist — this means no workflow project exists. Display error: No .workflows/ directory found. Initialise a workflow project first.\n- System config file exists but is invalid JSON — display error, offer to overwrite\n- API key env var is set but the test embed call fails (wrong key, network error) — display error, offer to continue setup anyway (user may fix the key later)\n- User presses Ctrl+C during setup — readline handles SIGINT, process exits cleanly\n- Previous setup was stub mode, user re-runs with openai — detect existing store has no vectors, suggest knowledge rebuild after setup completes\n\nSpec Reference: knowledge-base/design.md — knowledge setup command (lines 626-633, interactive wizard flow, skip logic, stub mode), System config creation flow review finding #18 (line 1008), Configuration Hierarchy section (lines 258-301, system and project config schemas)","transitions":[{"from":"open","to":"in_progress","at":"2026-04-19T16:28:36Z","auto":false},{"from":"in_progress","to":"done","at":"2026-04-19T16:36:59Z","auto":false}],"parent":"tick-2e511f","created":"2026-04-09T19:05:02Z","updated":"2026-04-19T16:36:59Z","closed":"2026-04-19T16:36:59Z"} {"id":"tick-b4348b","title":"Setup Wizard: Initial Indexing + Idempotency + CLI Integration","status":"done","priority":2,"type":"task","refs":["knowledge-base-7-2"],"description":"Problem: After system config and project init (Task 7-1), the knowledge base is empty. Existing projects may have dozens of completed artifacts that need to be indexed. The setup wizard must automatically index everything as its final step, and re-running setup must be safe — skipping already-completed steps without duplicating work.\n\nSolution: Wire up the existing bulk index logic (Task 4-4) as the final step of the setup wizard, ensure the full setup flow is idempotent, and register setup in the CLI dispatch.\n\nOutcome: Running knowledge setup on a project with existing completed work populates the knowledge base immediately. Re-running setup on an already-configured project skips to indexing (or exits if everything is done).\n\nDo:\n\nINITIAL INDEXING (Step 3 of the setup wizard):\n- After system config (Step 1) and project init (Step 2) complete (or are skipped), run initial indexing.\n- This delegates to the existing knowledge index (no args) bulk index logic from Task 4-4.\n- The bulk index discovers all completed artifacts via manifest, diffs against the store (which is empty for first setup), and indexes everything.\n- Display progress as files are indexed (same output as the bulk index command).\n- Display a clear completion summary covering how many files and chunks were indexed.\n- If the store already has chunks (re-run scenario): the bulk index logic naturally skips already-indexed items and only processes missing ones. No special handling needed.\n- If indexing fails for some files: the retry/pending queue mechanism from Task 4-4 handles it. Inform the user that some files could not be indexed and were added to the pending queue for automatic retry on next use.\n\nIDEMPOTENCY:\n- The full setup flow must be safe to re-run at any point:\n - System config exists → display current settings, offer to skip or reconfigure\n - Project init exists → display status, offer to skip or reinitialise\n - Store has chunks → bulk index skips already-indexed, only processes new/missing\n - Everything is current → display a clear \"already set up\" message and exit.\n- This covers the design doc requirement (line 631): skips steps that are already done.\n- Also covers the interrupted-setup scenario (design doc finding #5, line 965): if setup was interrupted mid-indexing, re-running picks up where it left off via the pending queue.\n\nCLI INTEGRATION:\n- Register the setup command in the CLI dispatch from Task 3-1. Task 3-1 lists setup alongside other Phase 4+ commands with a \"not yet implemented\" placeholder — replace that placeholder with a real handler that calls the wizard flow from Task 7-1 followed by the initial indexing from this task.\n\nSTUB-TO-FULL UPGRADE PATH:\n- If the user previously ran setup in stub mode and now re-runs with an OpenAI provider:\n - System config is updated with the new provider settings.\n - The existing store has no vectors (keyword-only mode).\n - Inform the user that the previous setup was keyword-only and they should run knowledge rebuild to re-index with embeddings for full hybrid search.\n - Do NOT automatically rebuild — it is destructive and may take time. The user should run it explicitly.\n- This matches the design doc (line 329): upgrading from stub to full requires knowledge rebuild.\n\nAcceptance Criteria:\n- Setup wizard indexes all existing completed artifacts as its final step\n- Progress and summary output matches the bulk index command\n- Failed indexing files are logged to pending queue with a note to the user\n- Re-running setup on a fully configured project exits cleanly with an already-set-up message\n- Re-running setup after interrupted indexing picks up where it left off\n- Setup command registered in CLI dispatch, replacing the Task 3-1 not-yet-implemented placeholder\n- Stub-to-full upgrade detected and user informed about knowledge rebuild\n- npm run build succeeds\n\nTests:\n- Unit tests for idempotency logic (tests/scripts/test-knowledge-config.cjs — extend):\n - it detects fully configured state (system + project + indexed)\n - it detects partially configured state (system exists, project missing)\n - it detects empty store needing initial indexing\n- CLI dispatch test (tests/scripts/test-knowledge-cli.sh — extend):\n - it routes to setup command without error (non-interactive detection will abort, which is the expected behaviour in test)\n- Manual validation:\n - Run setup on a project with existing completed artifacts -\u003e verify all are indexed\n - Run setup again -\u003e verify it skips everything and exits cleanly\n - Run setup after interruption -\u003e verify pending queue items are processed\n\nEdge Cases:\n- Project with no completed work units — initial indexing indexes 0 files, which is correct. The knowledge base is ready but empty.\n- Project with hundreds of completed artifacts — initial indexing may take time (embedding API calls). Display progress so the user knows it is working.\n- Setup interrupted with Ctrl+C during indexing — indexed files are saved (each save is atomic), unindexed files go to pending queue. Re-run picks up.\n- System config points to a provider but the API key env var is not set — initial indexing will fail (provider cannot embed). The retry/pending queue catches this. Setup still completes — the project is initialised, indexing is pending.\n- Multiple projects sharing the same system config — this is normal. System config has provider/key, each project has its own .workflows/.knowledge/. Setup only modifies the current project.\n\nSpec Reference: knowledge-base/design.md — knowledge setup command (lines 626-633, initial indexing as final step, skip logic), Init/resumability finding #5 (line 965, interrupted setup, pending queue picks up), Upgrading from stub to full (line 329, requires rebuild)","transitions":[{"from":"open","to":"in_progress","at":"2026-04-19T16:37:13Z","auto":false},{"from":"in_progress","to":"done","at":"2026-04-19T16:44:49Z","auto":false}],"parent":"tick-2e511f","created":"2026-04-09T19:05:40Z","updated":"2026-04-19T16:44:49Z","closed":"2026-04-19T16:44:49Z"} -{"id":"tick-74a599","title":"Phase 8: Release Process","status":"in_progress","priority":2,"refs":["knowledge-base-8"],"transitions":[{"from":"open","to":"in_progress","at":"2026-04-20T18:52:42Z","auto":true}],"parent":"tick-cbbd13","created":"2026-04-09T19:05:44Z","updated":"2026-04-20T18:52:42Z"} +{"id":"tick-74a599","title":"Phase 8: Release Process","status":"done","priority":2,"refs":["knowledge-base-8"],"transitions":[{"from":"open","to":"in_progress","at":"2026-04-20T18:52:42Z","auto":true},{"from":"in_progress","to":"done","at":"2026-04-20T19:05:06Z","auto":true}],"parent":"tick-cbbd13","created":"2026-04-09T19:05:44Z","updated":"2026-04-20T19:05:06Z","closed":"2026-04-20T19:05:06Z"} {"id":"tick-7f4725","title":"Release Script Build Integration","status":"done","priority":2,"type":"task","refs":["knowledge-base-8-1"],"description":"Problem: The knowledge CLI bundle (knowledge.cjs) must be committed to the repo before tagging because AGNTC installs from git tags with no build step. During Phases 1-7 development, the bundle was built and committed manually. For production releases, the build must be formalised into the release pipeline to prevent shipping stale bundles.\n\nSolution: Integrate the esbuild build step into the local release script so the bundle is always fresh when a release tag is created.\n\nOutcome: The release process automatically builds knowledge.cjs from source before tagging, ensuring every tagged release has an up-to-date bundle.\n\nDo:\n- Read the existing release script at the project root (./release) before editing. Study:\n 1. Where perform_release runs the dirty-tree gate (git status --porcelain check that aborts on any uncommitted changes)\n 2. Where perform_release currently stages/commits (note: this is gated inside an `if [[ \"$VERSION_STRATEGY\" != \"none\" ]]` block — the default \"none\" strategy currently performs no commit at all, only tag + push)\n 3. Where the annotated tag is created and pushed\n- The build step must sit AFTER the existing dirty-tree check and BEFORE the annotated tag is created. Placing it before the dirty-tree check would cause the gate to abort on a bundle rebuild; placing it after the tag would ship a stale bundle in the tagged commit.\n- The build step sequence:\n 1. Run `npm install` (ensure dev dependencies are available)\n 2. Run `npm run build` (esbuild bundles src/knowledge/ into skills/workflow-knowledge/scripts/knowledge.cjs)\n 3. Check whether the bundle changed (e.g., git diff on the bundle path)\n 4. If it changed: stage and commit the updated bundle. IMPORTANT: this commit must occur in ALL version strategies, including `VERSION_STRATEGY=\"none\"` — the existing `none` branch performs no commits, so this task is introducing a new commit point into a previously commit-free path. Do not hide the bundle commit inside the existing version-bump commit block; it is a distinct concern and must run regardless of version strategy.\n 5. If the bundle did not change: no commit needed, proceed.\n 6. Proceed with the existing tag + push flow.\n- Build failure (non-zero exit from `npm run build`) must abort the release — do not tag with a stale or missing bundle. Clean exit with a clear error.\n- The bundle commit is the only permitted mutation after the dirty-tree check passes. The dirty-tree check still protects against unrelated uncommitted user changes — the user's working tree must be clean entering the release, and the bundle commit is the only thing the release script itself adds on top.\n- DECISION POINT: the design doc (line 52) flags a choice between local build and CI build. This task implements the local-in-release-script path. Reasoning: the bundle must be committed BEFORE tagging (AGNTC installs from tags), and GitHub Actions runs AFTER tag push — too late to commit. Local build keeps the flow simple (build → commit → tag → push → CI validates). CI validates the committed bundle in Task 8-2 but does not rebuild it.\n- package.json already exists from Phase 1 (Task 1-1) with dev deps and build script. No changes needed to package.json.\n- node_modules/ is already gitignored from Phase 1. No changes needed.\n- The design doc also mentions (line 53) that GitHub releases may no longer be needed since AGNTC uses tags, not releases. Consider simplifying if trivial; defer if not. This is a note, not a requirement.\n\nAcceptance Criteria:\n- Release script runs `npm install` + `npm run build` between the dirty-tree check and the annotated tag\n- Updated bundle is committed before the tag is created\n- Bundle commit occurs in all version strategies, including `VERSION_STRATEGY=\"none\"` (previously commit-free)\n- Build failure aborts the release with a clear error message\n- Existing dirty-tree check still rejects unrelated uncommitted user changes\n- Existing release flow (version handling, tag, push) is preserved after the build step\n- Tagged releases contain the up-to-date knowledge.cjs bundle\n- node_modules/ remains gitignored\n\nTests:\n- Test file: tests/scripts/test-release-build.sh (shell test)\n- it runs the build step before tagging\n- it commits the updated bundle when the diff shows changes (in both default and `none` version strategies)\n- it skips the commit when the bundle is unchanged\n- it aborts release on build failure\n- it still rejects dirty working tree on entry\n- Manual validation:\n - Run release with modified source -\u003e verify bundle is rebuilt and committed before tag\n - Run release with no source changes -\u003e verify no unnecessary commit\n - Run release with `VERSION_STRATEGY=\"none\"` and modified source -\u003e verify bundle commit still happens\n\nEdge Cases:\n- First release after Phase 1 — bundle already exists and is committed. Build step rebuilds it (may or may not change depending on esbuild determinism). If unchanged, no commit.\n- npm install fails (network error, registry down) — abort release with clear error\n- Bundle size grows significantly in later phases — Task 1-1 sets a size threshold. If build produces a bundle over that, Task 1-1's test-knowledge-build.sh fails, which blocks CI in Task 8-2, which blocks the release.\n- Git working directory has uncommitted changes at script start — the existing dirty-tree gate aborts before any build step runs. User must commit or stash first.\n- Uncommitted bundle diff at script start — same as above, aborts on the dirty-tree gate. User handles manually.\n\nSpec Reference: knowledge-base/design.md — Release Process section (lines 45-54, build before tagging, bundle committed, local vs CI decision, GitHub releases simplification consideration), Build and Distribution section (lines 448-457, bundle committed to repo, release workflow change required). Script file to modify: ./release (perform_release function — dirty-tree check, VERSION_STRATEGY branch, tag creation).","transitions":[{"from":"open","to":"in_progress","at":"2026-04-20T18:52:42Z","auto":false},{"from":"in_progress","to":"done","at":"2026-04-20T18:59:48Z","auto":false}],"parent":"tick-74a599","created":"2026-04-09T19:06:33Z","updated":"2026-04-20T18:59:48Z","closed":"2026-04-20T18:59:48Z"} -{"id":"tick-de9b1a","title":"CI Test Pipeline Update","status":"open","priority":2,"type":"task","refs":["knowledge-base-8-2"],"description":"Problem: The GitHub Actions release workflow runs tests on tag push but currently only runs migration tests and discovery tests. The knowledge base adds new test files (Node .cjs and shell .sh) that must be included in the CI pipeline to prevent regressions from reaching tagged releases. Additionally, test-workflow-manifest.sh (which will gain manifest resolve tests from Task 3-2) is NOT currently run in CI since it doesn't match the existing glob patterns.\n\nSolution: Update the GitHub Actions release workflow to include all knowledge base test files alongside the existing test suite, explicitly include test-workflow-manifest.sh, and ensure the Node version is 18+ as required by Orama.\n\nOutcome: Every tagged release runs the full test suite including all knowledge base tests and the manifest resolve test, catching regressions before the release is published.\n\nDo:\n- Read the existing GitHub Actions workflow at .github/workflows/release.yml to understand the current test structure. The current pipeline (from the explore agent findings):\n - Run discovery tests: for test in tests/scripts/test-discovery-*.cjs; do node --test test; done\n - Run migration tests: for test in tests/scripts/test-migration-*.sh; do /bin/bash test; done\n\n- Verify and update the Node version. Design doc line 453 requires Node 18 minimum (Orama requirement), Node 20+ recommended. Check the workflow's node-version setting. If it uses an older version or is unspecified, update it to 20.\n\n- Add npm install step BEFORE the test runs. Unit tests (test-knowledge-embeddings.cjs, test-knowledge-store.cjs, test-knowledge-chunker.cjs, test-knowledge-config.cjs) import from src/knowledge/ source files, which require @orama/orama and @msgpack/msgpack from node_modules. npm install provides these dev dependencies.\n\n- DO NOT add npm run build in CI. The bundle is committed before tagging (per Task 8-1's local build decision). CI validates the committed bundle — it does not rebuild. Rebuilding in CI could produce a different bundle if esbuild has any non-determinism, which would defeat the purpose of committing the bundle before tagging. The integration test (Task 1-5) imports from the committed bundle directly.\n\n- Add knowledge base test runs in the same pattern as existing tests:\n\n Knowledge Node tests:\n for test in tests/scripts/test-knowledge-*.cjs; do\n node --test \"$test\"\n done\n This glob covers all Node test files created across Phases 1-4 (embeddings, store, chunker, config, integration, retry, openai).\n\n Knowledge shell tests:\n for test in tests/scripts/test-knowledge-*.sh; do\n /bin/bash \"$test\"\n done\n This glob covers all shell test files created across Phases 1-4 (build, cli).\n\n- EXPLICITLY include test-workflow-manifest.sh. This file exists (pre-knowledge-base) and will gain manifest resolve tests from Task 3-2. It does NOT match test-discovery-*.cjs or test-migration-*.sh globs, so it is currently NOT run in CI. Add it as a direct invocation:\n /bin/bash tests/scripts/test-workflow-manifest.sh\n This is a pre-existing CI gap that Phase 8 is closing.\n\n- The test pipeline ordering should be:\n 1. checkout (existing)\n 2. setup-node with node-version: 20 (verify/update)\n 3. npm install (new — for unit test dev deps)\n 4. Run migration tests (existing)\n 5. Run discovery tests (existing)\n 6. Run test-workflow-manifest.sh (new — explicit)\n 7. Run knowledge Node tests (new)\n 8. Run knowledge shell tests (new)\n\n- The OpenAI integration test (test-knowledge-openai-integration.cjs) is opt-in — it only runs when OPENAI_API_KEY env var is present. In CI, this env var is NOT set by default (no API keys in CI). The test skips itself. If the repo owner wants to run it in CI, they can add the secret to GitHub Actions — but this is optional, not required.\n\nAcceptance Criteria:\n- GitHub Actions workflow uses Node 20+ (verified or updated)\n- GitHub Actions workflow runs npm install before tests (for unit test dev deps)\n- GitHub Actions workflow does NOT run npm run build (bundle is already committed per Task 8-1)\n- GitHub Actions workflow runs all test-knowledge-*.cjs tests\n- GitHub Actions workflow runs all test-knowledge-*.sh tests\n- GitHub Actions workflow explicitly runs tests/scripts/test-workflow-manifest.sh\n- All tests pass in CI (the integration test skips without API key)\n- Existing migration and discovery tests continue to run\n- Test failure blocks the release (non-zero exit fails the workflow)\n\nTests:\n- No separate test for this task — the CI pipeline IS the test. Validation:\n - Push a tag and verify the GitHub Actions workflow runs all knowledge tests + test-workflow-manifest.sh\n - Verify the integration test is skipped (no OPENAI_API_KEY in CI)\n - Verify a test failure would block the release\n\nEdge Cases:\n- npm install in CI takes time — consider caching node_modules across runs (GitHub Actions cache action). Not required but improves CI speed.\n- Knowledge shell tests may depend on node being in PATH to run the bundle — verify the CI environment has node available for shell test subprocesses.\n- Test file ordering — tests should be independent and not depend on execution order. If any knowledge test depends on state from another test, that is a bug in the test.\n- Committed bundle mismatch — if the committed bundle is stale (developer forgot to rebuild before tagging), CI tests against it will either pass (if the bundle is still functionally correct) or fail (if tests assume newer behavior). This is a content issue, not a CI configuration issue. Task 8-1's build-before-tag flow prevents this.\n\nSpec Reference: knowledge-base/design.md — Testing Strategy section (lines 463-475, test location conventions, CLI command tests against built bundle), Build and Distribution section (lines 448-457, bundle committed to repo, release workflow needs build step — implemented in Task 8-1), Node version requirement (line 453)","parent":"tick-74a599","created":"2026-04-09T19:08:28Z","updated":"2026-04-10T15:29:37Z"} +{"id":"tick-de9b1a","title":"CI Test Pipeline Update","status":"done","priority":2,"type":"task","refs":["knowledge-base-8-2"],"description":"Problem: The GitHub Actions release workflow runs tests on tag push but currently only runs migration tests and discovery tests. The knowledge base adds new test files (Node .cjs and shell .sh) that must be included in the CI pipeline to prevent regressions from reaching tagged releases. Additionally, test-workflow-manifest.sh (which will gain manifest resolve tests from Task 3-2) is NOT currently run in CI since it doesn't match the existing glob patterns.\n\nSolution: Update the GitHub Actions release workflow to include all knowledge base test files alongside the existing test suite, explicitly include test-workflow-manifest.sh, and ensure the Node version is 18+ as required by Orama.\n\nOutcome: Every tagged release runs the full test suite including all knowledge base tests and the manifest resolve test, catching regressions before the release is published.\n\nDo:\n- Read the existing GitHub Actions workflow at .github/workflows/release.yml to understand the current test structure. The current pipeline (from the explore agent findings):\n - Run discovery tests: for test in tests/scripts/test-discovery-*.cjs; do node --test test; done\n - Run migration tests: for test in tests/scripts/test-migration-*.sh; do /bin/bash test; done\n\n- Verify and update the Node version. Design doc line 453 requires Node 18 minimum (Orama requirement), Node 20+ recommended. Check the workflow's node-version setting. If it uses an older version or is unspecified, update it to 20.\n\n- Add npm install step BEFORE the test runs. Unit tests (test-knowledge-embeddings.cjs, test-knowledge-store.cjs, test-knowledge-chunker.cjs, test-knowledge-config.cjs) import from src/knowledge/ source files, which require @orama/orama and @msgpack/msgpack from node_modules. npm install provides these dev dependencies.\n\n- DO NOT add npm run build in CI. The bundle is committed before tagging (per Task 8-1's local build decision). CI validates the committed bundle — it does not rebuild. Rebuilding in CI could produce a different bundle if esbuild has any non-determinism, which would defeat the purpose of committing the bundle before tagging. The integration test (Task 1-5) imports from the committed bundle directly.\n\n- Add knowledge base test runs in the same pattern as existing tests:\n\n Knowledge Node tests:\n for test in tests/scripts/test-knowledge-*.cjs; do\n node --test \"$test\"\n done\n This glob covers all Node test files created across Phases 1-4 (embeddings, store, chunker, config, integration, retry, openai).\n\n Knowledge shell tests:\n for test in tests/scripts/test-knowledge-*.sh; do\n /bin/bash \"$test\"\n done\n This glob covers all shell test files created across Phases 1-4 (build, cli).\n\n- EXPLICITLY include test-workflow-manifest.sh. This file exists (pre-knowledge-base) and will gain manifest resolve tests from Task 3-2. It does NOT match test-discovery-*.cjs or test-migration-*.sh globs, so it is currently NOT run in CI. Add it as a direct invocation:\n /bin/bash tests/scripts/test-workflow-manifest.sh\n This is a pre-existing CI gap that Phase 8 is closing.\n\n- The test pipeline ordering should be:\n 1. checkout (existing)\n 2. setup-node with node-version: 20 (verify/update)\n 3. npm install (new — for unit test dev deps)\n 4. Run migration tests (existing)\n 5. Run discovery tests (existing)\n 6. Run test-workflow-manifest.sh (new — explicit)\n 7. Run knowledge Node tests (new)\n 8. Run knowledge shell tests (new)\n\n- The OpenAI integration test (test-knowledge-openai-integration.cjs) is opt-in — it only runs when OPENAI_API_KEY env var is present. In CI, this env var is NOT set by default (no API keys in CI). The test skips itself. If the repo owner wants to run it in CI, they can add the secret to GitHub Actions — but this is optional, not required.\n\nAcceptance Criteria:\n- GitHub Actions workflow uses Node 20+ (verified or updated)\n- GitHub Actions workflow runs npm install before tests (for unit test dev deps)\n- GitHub Actions workflow does NOT run npm run build (bundle is already committed per Task 8-1)\n- GitHub Actions workflow runs all test-knowledge-*.cjs tests\n- GitHub Actions workflow runs all test-knowledge-*.sh tests\n- GitHub Actions workflow explicitly runs tests/scripts/test-workflow-manifest.sh\n- All tests pass in CI (the integration test skips without API key)\n- Existing migration and discovery tests continue to run\n- Test failure blocks the release (non-zero exit fails the workflow)\n\nTests:\n- No separate test for this task — the CI pipeline IS the test. Validation:\n - Push a tag and verify the GitHub Actions workflow runs all knowledge tests + test-workflow-manifest.sh\n - Verify the integration test is skipped (no OPENAI_API_KEY in CI)\n - Verify a test failure would block the release\n\nEdge Cases:\n- npm install in CI takes time — consider caching node_modules across runs (GitHub Actions cache action). Not required but improves CI speed.\n- Knowledge shell tests may depend on node being in PATH to run the bundle — verify the CI environment has node available for shell test subprocesses.\n- Test file ordering — tests should be independent and not depend on execution order. If any knowledge test depends on state from another test, that is a bug in the test.\n- Committed bundle mismatch — if the committed bundle is stale (developer forgot to rebuild before tagging), CI tests against it will either pass (if the bundle is still functionally correct) or fail (if tests assume newer behavior). This is a content issue, not a CI configuration issue. Task 8-1's build-before-tag flow prevents this.\n\nSpec Reference: knowledge-base/design.md — Testing Strategy section (lines 463-475, test location conventions, CLI command tests against built bundle), Build and Distribution section (lines 448-457, bundle committed to repo, release workflow needs build step — implemented in Task 8-1), Node version requirement (line 453)","transitions":[{"from":"open","to":"in_progress","at":"2026-04-20T19:00:03Z","auto":false},{"from":"in_progress","to":"done","at":"2026-04-20T19:05:06Z","auto":false}],"parent":"tick-74a599","created":"2026-04-09T19:08:28Z","updated":"2026-04-20T19:05:06Z","closed":"2026-04-20T19:05:06Z"} From 36c24a0473a04ae154026cfee39cefab634b81b4 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 20:32:07 +0100 Subject: [PATCH 03/78] fix(release): use npm ci so the lockfile cannot drift mid-release MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit npm install mutates package-lock.json on any resolvable version change, bypassing the dirty-tree gate and leaving uncommitted state after the tag is pushed. npm ci refuses to modify the lockfile and errors if drift exists — the correct primitive for a release flow that has already gated on a clean working tree. --- .github/workflows/release.yml | 2 +- release | 7 +++++-- tests/scripts/test-release-build.sh | 27 ++++++++++++++------------- 3 files changed, 20 insertions(+), 16 deletions(-) diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 4cad63f19..ff1f2f1e1 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -21,7 +21,7 @@ jobs: node-version: '20' - name: Install dependencies - run: npm install + run: npm ci - name: Run migration tests run: | diff --git a/release b/release index b0a2625ed..84d49a1b5 100755 --- a/release +++ b/release @@ -260,9 +260,12 @@ perform_release() { # Rebuild the knowledge CLI bundle so every tagged release ships a fresh # skills/workflow-knowledge/scripts/knowledge.cjs. AGNTC installs from tags # with no build step, so the bundle must be committed before the tag. + # Use `npm ci` (not `npm install`) so the lockfile can never drift mid-release. + # `npm install` would mutate package-lock.json on any resolvable version change, + # bypassing the dirty-tree gate and leaving uncommitted state after the tag. echo "Installing build dependencies..." - if ! npm install; then - echo "Error: npm install failed. Aborting release." >&2 + if ! npm ci; then + echo "Error: npm ci failed. Aborting release." >&2 exit 1 fi diff --git a/tests/scripts/test-release-build.sh b/tests/scripts/test-release-build.sh index afc4d238b..a3a9d7097 100755 --- a/tests/scripts/test-release-build.sh +++ b/tests/scripts/test-release-build.sh @@ -75,9 +75,9 @@ setup() { #!/bin/bash echo "npm $*" >> "$CALLS" case "$1" in - install) - if [ "${STUB_NPM_INSTALL_FAIL:-0}" = "1" ]; then - echo "stub: npm install failed" >&2 + ci) + if [ "${STUB_NPM_CI_FAIL:-0}" = "1" ]; then + echo "stub: npm ci failed" >&2 exit 1 fi exit 0 @@ -110,7 +110,7 @@ NPMEOF teardown() { cd "$REPO_DIR" rm -rf "$TEST_DIR" - unset STUB_NPM_INSTALL_FAIL STUB_NPM_BUILD_FAIL STUB_NPM_BUILD_MODIFIES + unset STUB_NPM_CI_FAIL STUB_NPM_BUILD_FAIL STUB_NPM_BUILD_MODIFIES } # Run perform_release in a subshell with git tag/push stubbed so tests never @@ -151,7 +151,7 @@ test_happy_path_bundle_changes() { run_release "1.0.0" "0.0.0" "none" || rc=$? assert_eq "perform_release exits 0 on clean build" "0" "$rc" - assert_eq "npm install was invoked" "true" "$(file_contains 'npm install' "$CALLS")" + assert_eq "npm ci was invoked" "true" "$(file_contains 'npm ci' "$CALLS")" assert_eq "npm run build was invoked" "true" "$(file_contains 'npm run build' "$CALLS")" assert_eq "bundle commit was created" "true" "$(git_log_contains 'rebuild knowledge bundle for v1.0.0')" assert_eq "tag was called after build" "true" "$(file_contains 'git tag' "$CALLS")" @@ -221,19 +221,19 @@ test_build_failure_aborts() { teardown } -# --- Test 6: npm install failure aborts --- -test_install_failure_aborts() { +# --- Test 6: npm ci failure aborts --- +test_ci_failure_aborts() { setup - export STUB_NPM_INSTALL_FAIL=1 + export STUB_NPM_CI_FAIL=1 local rc=0 run_release "1.0.0" "0.0.0" "none" || rc=$? - assert_eq "perform_release exits non-zero on install failure" "true" \ + assert_eq "perform_release exits non-zero on ci failure" "true" \ "$([ "$rc" -ne 0 ] && echo true || echo false)" - assert_eq "npm run build was NOT invoked after install failure" "false" \ + assert_eq "npm run build was NOT invoked after ci failure" "false" \ "$(file_contains 'npm run build' "$CALLS")" - assert_eq "tag was NOT called after install failure" "false" "$(file_contains 'git tag' "$CALLS")" + assert_eq "tag was NOT called after ci failure" "false" "$(file_contains 'git tag' "$CALLS")" teardown } @@ -251,7 +251,8 @@ test_dirty_tree_gate_fires() { "$([ "$rc" -ne 0 ] && echo true || echo false)" assert_eq "dirty-tree error message emitted" "true" \ "$(file_contains 'working directory is dirty' "$TEST_DIR/out.log")" - assert_eq "npm was NOT invoked when tree dirty" "false" "$(file_contains 'npm' "$CALLS")" + assert_eq "npm ci was NOT invoked when tree dirty" "false" "$(file_contains 'npm ci' "$CALLS")" + assert_eq "npm run build was NOT invoked when tree dirty" "false" "$(file_contains 'npm run build' "$CALLS")" teardown } @@ -286,7 +287,7 @@ test_bundle_unchanged_skips_commit test_version_none_commits_bundle test_version_file_commits_bundle test_build_failure_aborts -test_install_failure_aborts +test_ci_failure_aborts test_dirty_tree_gate_fires test_build_runs_before_tag From 097df1429d15d3440b3381ad24d9bb8f723e318e Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 20:43:10 +0100 Subject: [PATCH 04/78] =?UTF-8?q?chore(ci):=20remove=20release.yml=20?= =?UTF-8?q?=E2=80=94=20post-hoc=20tests,=20unused=20GH=20Releases?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Triggered on tag push, so tests can't gate a release — the tag is already live by the time the job starts. AGNTC installs from git tags directly, so the GitHub Release page the workflow produces is never consumed. Both jobs were cost with no return. Phase 8 Task 8-2 was layering more tests onto this dead pipeline; reverting that along with the pre-existing cruft. --- .github/workflows/release.yml | 79 ----------------------------------- 1 file changed, 79 deletions(-) delete mode 100644 .github/workflows/release.yml diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml deleted file mode 100644 index ff1f2f1e1..000000000 --- a/.github/workflows/release.yml +++ /dev/null @@ -1,79 +0,0 @@ -name: Release - -on: - push: - tags: - - 'v*' - -permissions: - contents: write - -jobs: - test: - runs-on: ubuntu-latest - steps: - - name: Checkout - uses: actions/checkout@v4 - - - name: Setup Node.js - uses: actions/setup-node@v4 - with: - node-version: '20' - - - name: Install dependencies - run: npm ci - - - name: Run migration tests - run: | - for test in tests/scripts/test-migration-*.sh; do - echo "=== Running $test ===" - /bin/bash "$test" - done - - - name: Run discovery tests - run: | - for test in tests/scripts/test-discovery-*.cjs; do - echo "=== Running $test ===" - node --test "$test" - done - - - name: Run workflow-manifest tests - run: /bin/bash tests/scripts/test-workflow-manifest.sh - - - name: Run knowledge Node tests - run: | - for test in tests/scripts/test-knowledge-*.cjs; do - echo "=== Running $test ===" - node --test "$test" - done - - - name: Run knowledge shell tests - run: | - for test in tests/scripts/test-knowledge-*.sh; do - echo "=== Running $test ===" - /bin/bash "$test" - done - - release: - needs: test - runs-on: ubuntu-latest - steps: - - name: Checkout - uses: actions/checkout@v4 - with: - fetch-depth: 0 - - - name: Extract release notes from tag annotation - id: notes - run: | - TAG_MESSAGE=$(git tag -l --format='%(contents)' "$GITHUB_REF_NAME") - { - echo 'BODY<> "$GITHUB_OUTPUT" - - - name: Create GitHub release - uses: softprops/action-gh-release@v2 - with: - body: ${{ steps.notes.outputs.BODY }} From bbe53a4ac04ddc7ed1027d429094754c808e0cf5 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:10:26 +0100 Subject: [PATCH 05/78] fix(manifest): list unions registry with filesystem (recover legacy units) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit cmdList previously used the project manifest registry when populated, falling back to a filesystem scan only when the registry was empty. Work units created before the registry existed are therefore invisible to 'manifest list' — and to every knowledge-base consumer (bulk index, status, compact). Real-data test: 9 dirs on disk, 1 registered, only 2 files indexed. Union both sources so downstream tools see every unit that actually exists. Deduped via Set. Dot-prefix and malformed-manifest handling unchanged. Closes deferred-issues #17. --- skills/workflow-manifest/scripts/manifest.cjs | 19 +++++++++++-------- tests/scripts/test-workflow-manifest.sh | 18 ++++++++++++++++++ 2 files changed, 29 insertions(+), 8 deletions(-) diff --git a/skills/workflow-manifest/scripts/manifest.cjs b/skills/workflow-manifest/scripts/manifest.cjs index 57f6a16c5..355245717 100644 --- a/skills/workflow-manifest/scripts/manifest.cjs +++ b/skills/workflow-manifest/scripts/manifest.cjs @@ -646,16 +646,19 @@ function cmdList(args) { return; } - // Use project manifest for work unit names, fall back to filesystem scan + // Union project manifest registry with filesystem scan. Using the registry + // alone misses legacy work units (dirs created before the registry existed); + // using the filesystem alone misses nothing but discards the registry's + // purpose. Either source independently leaves gaps — union both. const proj = readProjectManifest(); - let names; - if (proj.work_units && Object.keys(proj.work_units).length > 0) { - names = Object.keys(proj.work_units); - } else { - names = fs.readdirSync(WORKFLOWS_DIR, { withFileTypes: true }) - .filter(e => e.isDirectory() && !e.name.startsWith('.')) - .map(e => e.name); + const namesSet = new Set(); + if (proj.work_units) { + for (const n of Object.keys(proj.work_units)) namesSet.add(n); + } + for (const e of fs.readdirSync(WORKFLOWS_DIR, { withFileTypes: true })) { + if (e.isDirectory() && !e.name.startsWith('.')) namesSet.add(e.name); } + const names = Array.from(namesSet); const results = []; diff --git a/tests/scripts/test-workflow-manifest.sh b/tests/scripts/test-workflow-manifest.sh index aff6fc589..30bccde35 100755 --- a/tests/scripts/test-workflow-manifest.sh +++ b/tests/scripts/test-workflow-manifest.sh @@ -598,6 +598,24 @@ assert_not_contains "$output" '"name": "old-thing"' "Dot-prefixed directory skip echo "" +# ---------------------------------------------------------------------------- + +echo -e "${YELLOW}Test: list unions project registry with filesystem (legacy unit recovery)${NC}" +setup_fixture +# Registered via project manifest +run_cli init registered --work-type feature --description "Registered" >/dev/null 2>&1 +# Legacy: work unit dir + manifest on disk, but NOT in project manifest registry +mkdir -p "$TEST_DIR/.workflows/legacy" +cat > "$TEST_DIR/.workflows/legacy/manifest.json" << 'EOF' +{"name":"legacy","work_type":"feature","status":"in-progress","description":"Pre-registry"} +EOF +output=$(run_cli_stdout list) + +assert_contains "$output" '"name": "registered"' "Registered work unit listed" +assert_contains "$output" '"name": "legacy"' "Legacy (filesystem-only) work unit listed" + +echo "" + # ============================================================================ # INIT-PHASE TESTS # ============================================================================ From 263a2f37e914a48cff899a506835d657e9c79f47 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:15:39 +0100 Subject: [PATCH 06/78] fix(knowledge): warn on stub-to-full upgrade in index command MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit cmdIndex silently stayed in keyword-only mode when the user configured a provider after an initial stub-mode index — only 'query' and 'status' warned. On the first index call after the upgrade, emit a one-shot note to stderr telling the user to run 'knowledge rebuild' to switch to vector search. Deduplicated via a module-level flag so bulk indexing of N files does not spam N identical warnings. Also fix test isolation: the CLI test suite leaked the developer's real ~/.config/workflows/config.json into tempdir-based tests, breaking keyword-only scenarios (Test 11 onward) on any machine with a real knowledge-base setup. Pin HOME/XDG_CONFIG_HOME to a tempdir. Closes deferred-issues #11. --- .../workflow-knowledge/scripts/knowledge.cjs | 84 +++++++++---------- src/knowledge/index.js | 13 +++ tests/scripts/test-knowledge-cli.sh | 22 +++++ 3 files changed, 77 insertions(+), 42 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 3820f6b31..a373dcbd5 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,38 +1,38 @@ -"use strict";var b=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var lt=b(K=>{"use strict";Object.defineProperty(K,"__esModule",{value:!0});K.SUPPORTED_LANGUAGES=K.SPLITTERS=K.STEMMERS=void 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No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function Jo(t){let e=$.systemConfigPath(),n=Go(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let a=n.knowledge;if(process.stdout.write(` provider: ${a.provider==null?"(none \u2014 stub mode)":a.provider} @@ -69,7 +69,7 @@ Found an existing API key in ${s} \u2014 validating via a test embed... ${a} `),!await Ce(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await xf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function xf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await Ef(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Ef(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -112,7 +112,7 @@ Initial indexing `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function Ef(t,e,n){qo();let r=Se.resolve(process.cwd(),".workflows");_e.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`)}}async function Af(t,e,n){qo();let r=Se.resolve(process.cwd(),".workflows");_e.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. `),process.exit(1));let s=zo(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== @@ -120,7 +120,7 @@ Knowledge base setup Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}ec.exports={cmdSetup:Ef,requireTTY:qo,createPrompter:zo,ask:an,askYesNo:Ce,askSecret:Vo,buildSystemConfigOpenAI:Wo,buildSystemConfigStub:Ko,buildProjectConfigEmpty:Ho,detectSystemConfig:Go,detectProjectInit:Yo,validateApiKey:ln,describeValidationError:dn,ensureOpenAIKey:Xo,runSystemConfigStep:Jo,runProjectInitStep:Zo,runInitialIndexStep:Qo,KEYWORD_ONLY_DIMENSIONS:$o,OPENAI_DEFAULT_MODEL:Fo,OPENAI_DEFAULT_DIMENSIONS:Bo}});var T=require("fs"),q=require("path"),E=vr(),sc=Ao(),{StubProvider:Af}=Dr(),{OpenAIProvider:vf}=un(),Fe=Nr(),ic=tc(),Lr=["research","discussion","investigation","specification"],Tf=T.existsSync(q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"))?q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"):q.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs"),ct=[1e3,2e3,4e3],Df=5,jr=1536;function oc(t){let e=[],n={},r=0;for(;r [options] +`)}ec.exports={cmdSetup:Af,requireTTY:qo,createPrompter:zo,ask:an,askYesNo:Ce,askSecret:Vo,buildSystemConfigOpenAI:Wo,buildSystemConfigStub:Ko,buildProjectConfigEmpty:Ho,detectSystemConfig:Go,detectProjectInit:Yo,validateApiKey:ln,describeValidationError:dn,ensureOpenAIKey:Xo,runSystemConfigStep:Jo,runProjectInitStep:Zo,runInitialIndexStep:Qo,KEYWORD_ONLY_DIMENSIONS:$o,OPENAI_DEFAULT_MODEL:Fo,OPENAI_DEFAULT_DIMENSIONS:Bo}});var T=require("fs"),q=require("path"),E=vr(),ic=Ao(),{StubProvider:vf}=Dr(),{OpenAIProvider:Tf}=un(),Fe=Nr(),oc=tc(),Lr=["research","discussion","investigation","specification"],Df=T.existsSync(q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"))?q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"):q.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs"),ct=[1e3,2e3,4e3],Mf=5,jr=1536,nc=!1;function cc(t){let e=[],n={},r=0;for(;r [options] Commands: index Index a file or all pending artifacts @@ -138,56 +138,56 @@ Options: --phase Filter by phase --topic Filter by topic --limit Limit number of results - --dry-run Preview without making changes`;function ce(){return q.resolve(process.cwd(),".workflows",".knowledge")}function ue(){return q.join(ce(),"store.msp")}function be(){return q.join(ce(),"metadata.json")}function Te(){return q.join(ce(),".lock")}function Mf(t){return new Promise(e=>setTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ct,s;for(let i=0;isetTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ct,s;for(let i=0;iFr(s,o,n,r),{maxAttempts:3,backoff:ct});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await lc(n,r,Df)}async function Fr(t,e,n,r){let s=Of(e.workUnit),i=q.join(__dirname,"..","chunking",e.phase+".json");if(!T.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(T.readFileSync(i,"utf8")),c=q.resolve(t),u=T.readFileSync(c,"utf8"),a=sc.chunk(u,o);if(a.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ce(),d=ue(),f=be(),p=Te();T.existsSync(l)||T.mkdirSync(l,{recursive:!0});let g,y,h=T.existsSync(d),m=T.existsSync(f);h&&(g=await E.loadStore(d)),m&&(y=E.readMetadata(f),Array.isArray(y.pending)||(y.pending=[]));let w,S;if(y){let A=uc(y,n,r);w=A.mode,S=A.provider}else r?(w="full",S=r):(w="keyword-only",S=null);if(!g){let A=S?S.dimensions():n.dimensions||jr;g=await E.createStore(A)}let _=null;if(w==="full"&&S&&a.length>0){let A=a.map(k=>k.content);_=await S.embedBatch(A)}let I=Date.now(),v=o.confidence||"medium",D=a.map((A,k)=>{let De=String(k+1).padStart(3,"0"),X={id:`${e.workUnit}-${e.phase}-${e.topic}-${De}`,content:A.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:v,source_file:t,timestamp:I};return _&&(X.embedding=_[k]),X});return await E.withLock(p,async()=>{h?g=await E.loadStore(d):T.existsSync(d)&&(g=await E.loadStore(d)),await E.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let k of D)await E.insertDocument(g,k);await E.saveStore(g,d);let A=T.existsSync(f)?E.readMetadata(f):null;if(A)A.last_indexed=new Date().toISOString(),Array.isArray(A.pending)||(A.pending=[]),E.writeMetadata(f,A);else{let k={provider:S?n.provider:null,model:S?S.model():null,dimensions:S?S.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};E.writeMetadata(f,k)}}),D.length}function ot(t){let{execFileSync:e}=require("child_process");return e("node",[Tf,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}async function ac(t,e,n,r){return(await E.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function Br(){let t=[],e;try{let n=ot(["list"]);e=JSON.parse(n)}catch{return t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Lr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let a=ot(["resolve",`${r}.${s}.${o}`]).trim();a&&T.existsSync(q.resolve(a))&&t.push({file:a,workUnit:r,phase:s,topic:o})}catch{}}}}return t}async function fn(t,e,n){let r=Br(),s=ce(),i=ue();T.existsSync(s)||T.mkdirSync(s,{recursive:!0});let o=null;T.existsSync(i)&&(o=await E.loadStore(i));let c=0,u=0,a=0;for(let l of r){if(o&&await ac(o,l.workUnit,l.phase,l.topic)){a++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await ut(()=>Fr(l.file,d,e,n),{maxAttempts:3,backoff:ct});process.stdout.write(`Indexing ${l.file}... ${f} chunks -`),c++,u+=f,T.existsSync(i)&&(o=await E.loadStore(i))}catch(d){await kf(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. 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Run \`knowledge rebuild\` to reindex. +`),await dc(n,r,Mf)}async function Fr(t,e,n,r){let s=Pf(e.workUnit),i=q.join(__dirname,"..","chunking",e.phase+".json");if(!T.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(T.readFileSync(i,"utf8")),c=q.resolve(t),u=T.readFileSync(c,"utf8"),a=ic.chunk(u,o);if(a.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ce(),d=ue(),f=be(),p=Te();T.existsSync(l)||T.mkdirSync(l,{recursive:!0});let g,y,h=T.existsSync(d),m=T.existsSync(f);h&&(g=await E.loadStore(d)),m&&(y=E.readMetadata(f),Array.isArray(y.pending)||(y.pending=[]));let w,S;if(y){let A=ac(y,n,r);w=A.mode,S=A.provider}else r?(w="full",S=r):(w="keyword-only",S=null);if(!g){let A=S?S.dimensions():n.dimensions||jr;g=await E.createStore(A)}let _=null;if(w==="full"&&S&&a.length>0){let A=a.map(k=>k.content);_=await S.embedBatch(A)}let I=Date.now(),v=o.confidence||"medium",D=a.map((A,k)=>{let De=String(k+1).padStart(3,"0"),X={id:`${e.workUnit}-${e.phase}-${e.topic}-${De}`,content:A.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:v,source_file:t,timestamp:I};return _&&(X.embedding=_[k]),X});return await E.withLock(p,async()=>{h?g=await E.loadStore(d):T.existsSync(d)&&(g=await E.loadStore(d)),await E.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let k of D)await E.insertDocument(g,k);await E.saveStore(g,d);let A=T.existsSync(f)?E.readMetadata(f):null;if(A)A.last_indexed=new Date().toISOString(),Array.isArray(A.pending)||(A.pending=[]),E.writeMetadata(f,A);else{let k={provider:S?n.provider:null,model:S?S.model():null,dimensions:S?S.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};E.writeMetadata(f,k)}}),D.length}function ot(t){let{execFileSync:e}=require("child_process");return e("node",[Df,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}async function lc(t,e,n,r){return(await E.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function Br(){let t=[],e;try{let n=ot(["list"]);e=JSON.parse(n)}catch{return t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Lr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let a=ot(["resolve",`${r}.${s}.${o}`]).trim();a&&T.existsSync(q.resolve(a))&&t.push({file:a,workUnit:r,phase:s,topic:o})}catch{}}}}return t}async function fn(t,e,n){let r=Br(),s=ce(),i=ue();T.existsSync(s)||T.mkdirSync(s,{recursive:!0});let o=null;T.existsSync(i)&&(o=await E.loadStore(i));let c=0,u=0,a=0;for(let l of r){if(o&&await lc(o,l.workUnit,l.phase,l.topic)){a++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await ut(()=>Fr(l.file,d,e,n),{maxAttempts:3,backoff:ct});process.stdout.write(`Indexing ${l.file}... ${f} chunks +`),c++,u+=f,T.existsSync(i)&&(o=await E.loadStore(i))}catch(d){await Nf(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. +`)}}await dc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${u} chunks). ${a} already indexed. +`)}async function Nf(t,e){let n=be(),r=ce(),s=Te();T.existsSync(r)||T.mkdirSync(r,{recursive:!0}),await E.withLock(s,async()=>{let i;T.existsSync(n)?i=E.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(u=>u.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};o>=0?i.pending[o]=c:i.pending.push(c),E.writeMetadata(n,i)})}async function Rr(t){let e=be(),n=Te();T.existsSync(e)&&await E.withLock(n,async()=>{if(!T.existsSync(e))return;let r=E.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),E.writeMetadata(e,r))})}async function dc(t,e,n){let r=be();if(!T.existsSync(r))return;let s=E.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){let c=q.resolve(o.file);if(!T.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. +`),await Rr(o.file);continue}let u;try{u=Cr(o.file)}catch{await Rr(o.file);continue}try{await ut(()=>Fr(o.file,u,t,e),{maxAttempts:3,backoff:ct}),await Rr(o.file)}catch{}}}var Uf={high:4,medium:3,"low-medium":2,low:1};function Rf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Lf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}function jf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;e&&i.work_unit===e&&(o+=.1);let c=Uf[i.confidence]||0;o+=c*.01;let u=((i.timestamp||0)-r)/s;return o+=u*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Cf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} - Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Cf(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N] + Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Ff(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N] `),process.exit(1));let s=t,i=e.limit||10,o=ue(),c=be();if(!T.existsSync(o)){process.stdout.write(`[0 results] -`);return}let u=await E.loadStore(o),a="keyword-only",l=null,d=null;T.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=E.readMetadata(c),p=jf(f,n,r);a=p.mode,l=p.provider,a==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":a==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let _=e.phase.split(",").map(I=>I.trim());g.phase=_.length===1?{eq:_[0]}:{in:_}}if(e.workType){let _=e.workType.split(",").map(I=>I.trim());g.work_type=_.length===1?{eq:_[0]}:{in:_}}if(e.topic){let _=e.topic.split(",").map(I=>I.trim());g.topic=_.length===1?{eq:_[0]}:{in:_}}let y=n.similarity_threshold||.8,h=Object.keys(g).length>0?g:void 0,m=new Map;for(let _ of s){let I;if(a==="full"&&l){let v=await ut(()=>l.embed(_),{maxAttempts:3,backoff:ct});I=await E.searchHybrid(u,{term:_,vector:v,where:h,limit:i*2,similarity:y})}else I=await E.searchFulltext(u,{term:_,where:h,limit:i*2});for(let v of I){let D=m.get(v.id);(!D||v.score>D.score)&&m.set(v.id,v)}}let w=Lf(Array.from(m.values()),e.workUnit);w.length>i&&(w=w.slice(0,i));let S=[];d&&S.push(d),S.push(`[${w.length} results]`);for(let _ of w){S.push("");let I=Rf(_.timestamp);S.push(`[${_.phase} | ${_.work_unit}/${_.topic} | ${_.confidence} | ${I}]`),S.push(_.content),S.push(`Source: ${_.source_file}`)}process.stdout.write(S.join(` +`);return}let u=await E.loadStore(o),a="keyword-only",l=null,d=null;T.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=E.readMetadata(c),p=Cf(f,n,r);a=p.mode,l=p.provider,a==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":a==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let _=e.phase.split(",").map(I=>I.trim());g.phase=_.length===1?{eq:_[0]}:{in:_}}if(e.workType){let _=e.workType.split(",").map(I=>I.trim());g.work_type=_.length===1?{eq:_[0]}:{in:_}}if(e.topic){let _=e.topic.split(",").map(I=>I.trim());g.topic=_.length===1?{eq:_[0]}:{in:_}}let y=n.similarity_threshold||.8,h=Object.keys(g).length>0?g:void 0,m=new Map;for(let _ of s){let I;if(a==="full"&&l){let v=await ut(()=>l.embed(_),{maxAttempts:3,backoff:ct});I=await E.searchHybrid(u,{term:_,vector:v,where:h,limit:i*2,similarity:y})}else I=await E.searchFulltext(u,{term:_,where:h,limit:i*2});for(let v of I){let D=m.get(v.id);(!D||v.score>D.score)&&m.set(v.id,v)}}let w=jf(Array.from(m.values()),e.workUnit);w.length>i&&(w=w.slice(0,i));let S=[];d&&S.push(d),S.push(`[${w.length} results]`);for(let _ of w){S.push("");let I=Lf(_.timestamp);S.push(`[${_.phase} | ${_.work_unit}/${_.topic} | ${_.confidence} | ${I}]`),S.push(_.content),S.push(`Source: ${_.source_file}`)}process.stdout.write(S.join(` `)+` -`)}async function Ff(){let t=ce(),e=q.join(t,"config.json"),n=ue();if(!T.existsSync(t)){process.stdout.write(`not-ready +`)}async function Bf(){let t=ce(),e=q.join(t,"config.json"),n=ue();if(!T.existsSync(t)){process.stdout.write(`not-ready `);return}if(!T.existsSync(e)){process.stdout.write(`not-ready `);return}if(!T.existsSync(n)){process.stdout.write(`not-ready `);return}try{await E.loadStore(n)}catch{process.stdout.write(`not-ready `);return}process.stdout.write(`ready -`)}async function Bf(){let t=ce(),e=ue(),n=be(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!T.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` +`)}async function $f(){let t=ce(),e=ue(),n=be(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!T.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await E.loadStore(e),i=await E.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},u={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,u[h.work_type]=(u[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,m]of Object.entries(o))r.push(` ${h}: ${m}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,m]of Object.entries(c))r.push(` ${h}: ${m}`)}if(Object.keys(u).length>0){r.push(""),r.push("By work type:");for(let[h,m]of Object.entries(u))r.push(` ${h}: ${m}`)}r.push("");let l=(T.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),T.existsSync(n)){let h=E.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let w of h.pending)r.push(` ${w.file} \u2014 ${w.error} (${w.failed_at})`)}let m;try{m=Fe.loadConfig()}catch{m=null}if(m){let w=Fe.resolveProvider(m);h.provider&&w&&(h.provider!==m.provider||h.model!==w.model()||h.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. 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Run `knowledge rebuild` to reindex.")),(h.provider===null||h.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),T.existsSync(q.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=Br(),m=[];for(let w of h)await lc(s,w.workUnit,w.phase,w.topic)||m.push(w.file);if(m.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${m.length}`);for(let w of m)r.push(` ${w}`)}}catch{}let p=[];for(let h of Object.keys(o)){let m=fc(h);m&&m.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${h}`)}let g=i.filter(h=>h.phase==="specification"),y=new Set(g.map(h=>`${h.work_unit}.specification.${h.topic}`));for(let h of y)try{ot(["get",h,"status"]).trim()==="superseded"&&p.push(`Superseded spec still indexed: ${h}`)}catch{}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let h of p)r.push(` ${h}`)}process.stdout.write(r.join(` `)+` -`)}async function $f(t,e,n,r){let s=ue(),i=be(),o=Te();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function qf(t,e,n,r){let s=ue(),i=be(),o=Te();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. -Type 'rebuild' to confirm: `),await qf()!=="rebuild"&&(process.stderr.write(`Aborted. +Type 'rebuild' to confirm: `),await zf()!=="rebuild"&&(process.stderr.write(`Aborted. `),process.exit(1)),Br().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) `),process.exit(1)),await E.withLock(o,async()=>{T.existsSync(s)&&T.unlinkSync(s),T.existsSync(i)&&T.unlinkSync(i);let a=r?r.dimensions():n&&n.dimensions||jr,l=await E.createStore(a);await E.saveStore(l,s),E.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. -`),await fn(e,n,r)}function qf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function zf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`),await fn(e,n,r)}function zf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Vf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1));let n=ue(),r=Te();if(!T.existsSync(n)){let o=rc(e);process.stdout.write(`Removed 0 chunks for ${o} -`);return}let s=0;await E.withLock(r,async()=>{let o=await E.loadStore(n),c={work_unit:{eq:e.workUnit}};e.phase&&(c.phase={eq:e.phase}),e.topic&&(c.topic={eq:e.topic}),s=await E.removeByFilter(o,c),await E.saveStore(o,n)});let i=rc(e);process.stdout.write(`Removed ${s} chunks for ${i} -`)}function rc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function dc(t){try{let e=ot(["get",t,"status"]).trim(),n=null;try{n=ot(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch{}return{status:e,completed_at:n}}catch{return null}}async function Vf(t,e,n){let r=ue(),s=Te(),i=n&&n.decay_months!==void 0?n.decay_months:Fe.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`),process.exit(1));let n=ue(),r=Te();if(!T.existsSync(n)){let o=sc(e);process.stdout.write(`Removed 0 chunks for ${o} +`);return}let s=0;await E.withLock(r,async()=>{let o=await E.loadStore(n),c={work_unit:{eq:e.workUnit}};e.phase&&(c.phase={eq:e.phase}),e.topic&&(c.topic={eq:e.topic}),s=await E.removeByFilter(o,c),await E.saveStore(o,n)});let i=sc(e);process.stdout.write(`Removed ${s} chunks for ${i} +`)}function sc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function fc(t){try{let e=ot(["get",t,"status"]).trim(),n=null;try{n=ot(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch{}return{status:e,completed_at:n}}catch{return null}}async function Wf(t,e,n){let r=ue(),s=Te(),i=n&&n.decay_months!==void 0?n.decay_months:Fe.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. 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diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 5db99ddbe..6fea7f535 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -36,6 +36,10 @@ const PENDING_CATCHUP_LIMIT = 5; // omit the embedding field entirely — this value just satisfies the schema. const KEYWORD_ONLY_DIMENSIONS = 1536; +// Emit the stub-to-full upgrade note at most once per process to avoid +// spamming bulk-index runs that iterate over many files. +let stubUpgradeWarned = false; + // --------------------------------------------------------------------------- // Flag parsing // --------------------------------------------------------------------------- @@ -270,7 +274,16 @@ function resolveProviderState(metadata, cfg, provider) { // Case 4: metadata.provider is null (keyword-only store). // Always allowed — index WITHOUT vectors regardless of current config. + // If the user has since configured a provider, warn once so they know + // they're still in keyword-only mode and must `rebuild` to upgrade. if (metaProvider === null || metaProvider === undefined) { + if (provider && !stubUpgradeWarned) { + stubUpgradeWarned = true; + process.stderr.write( + 'Note: store is keyword-only but an embedding provider is now configured. ' + + 'Run `knowledge rebuild` to switch to full hybrid search.\n' + ); + } return { mode: 'keyword-only', provider: null }; } diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 4f176a7b2..4fcd6dc56 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -24,6 +24,14 @@ assert_eq() { fi } +# Isolate tests from the developer's real system config (~/.config/workflows/). +# Without this, a real OpenAI config leaks into keyword-only tests and breaks +# Test 11 onward. +FAKE_HOME=$(mktemp -d) +export HOME="$FAKE_HOME" +export XDG_CONFIG_HOME="$FAKE_HOME/.config" +trap 'rm -rf "$FAKE_HOME"' EXIT + # Create a temp dir as the project root for each test group. TEST_ROOT="" setup_project() { @@ -460,6 +468,20 @@ output=$(run_kb query "topic" 2>&1) assert_eq "shows upgrade note" "true" "$(echo "$output" | grep -q 'keyword-only mode' && echo true || echo false)" teardown_project +# --- Test 23b: Stub-to-full upgrade note also fires on `index` (not just query) --- +echo "Test 23b: Upgrade note on index" +setup_project +create_work_unit "auth-flow" "feature" "Auth" +write_keyword_config +create_discussion_file "auth-flow" "auth-flow" +run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 +# Upgrade config to have a provider. +write_stub_config +# Re-index: should emit upgrade note on stderr. +output=$(run_kb index .workflows/auth-flow/discussion/auth-flow.md 2>&1) +assert_eq "shows upgrade note on index" "true" "$(echo "$output" | grep -q 'Run .knowledge rebuild.' && echo true || echo false)" +teardown_project + # --- Test 24: Query on empty store returns [0 results] --- echo "Test 24: Empty store" setup_project From b5c943055dc196539803cb189f25e4153fb03f4e Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:20:51 +0100 Subject: [PATCH 07/78] feat(knowledge): pending-removal queue with automatic retry MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit knowledge remove previously had no retry — a locked store or transient I/O failure left stale chunks in the index forever and told the user to retry manually. Indexing already has a pending queue; removals now mirror it. Changes: - metadata.pending_removals tracks failed removals with workUnit/phase/ topic, attempts counter (cap 10, then evict with stderr warning). - cmdRemove drains the queue first, attempts the new removal, queues on failure. - cmdCompact drains the queue on entry. - status surfaces pending removals alongside pending indexes. - Skill callsites (cancellation, supersession, promotion) updated to describe auto-retry instead of 'run knowledge remove manually later'. Closes deferred-issues #18. --- .../workflow-knowledge/scripts/knowledge.cjs | 175 +++++++++--------- .../references/promote-to-cross-cutting.md | 4 +- .../references/spec-completion.md | 2 +- .../references/manage-work-unit.md | 2 +- src/knowledge/index.js | 171 +++++++++++++++-- tests/scripts/test-knowledge-cli.sh | 29 +++ 6 files changed, 277 insertions(+), 106 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index a373dcbd5..8214247b1 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,48 +1,48 @@ -"use strict";var b=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var lt=b(K=>{"use strict";Object.defineProperty(K,"__esModule",{value:!0});K.SUPPORTED_LANGUAGES=K.SPLITTERS=K.STEMMERS=void 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n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,eo.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,eo.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};Q.Encoder=dr});var to=b(hr=>{"use strict";Object.defineProperty(hr,"__esModule",{value:!0});hr.encode=wd;var md=fr();function wd(t,e){return new md.Encoder(e).encodeSharedRef(t)}});var no=b(pr=>{"use strict";Object.defineProperty(pr,"__esModule",{value:!0});pr.prettyByte=_d;function _d(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var ro=b(rn=>{"use strict";Object.defineProperty(rn,"__esModule",{value:!0});rn.CachedKeyDecoder=void 0;var Sd=Yt(),bd=16,Id=16,gr=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=bd,n=Id){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Sd.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};rn.CachedKeyDecoder=gr});var on=b(sn=>{"use strict";Object.defineProperty(sn,"__esModule",{value:!0});sn.Decoder=void 0;var yr=no(),xd=nn(),ve=Qt(),Ed=Yt(),so=lr(),Ad=ro(),oe=Zt(),mr="array",nt="map_key",oo="map_value",vd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new oe.DecodeError("The type of key must be string or number but "+typeof t)},wr=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=mr,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=nt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===mr){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===nt||e.type===oo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},tt=-1,Sr=new DataView(new ArrayBuffer(0)),Td=new Uint8Array(Sr.buffer);try{Sr.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var io=new RangeError("Insufficient data"),Dd=new Ad.CachedKeyDecoder,_r=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Sr;bytes=Td;headByte=tt;stack=new wr;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??xd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??ve.UINT32_MAX,this.maxBinLength=e?.maxBinLength??ve.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??ve.UINT32_MAX,this.maxMapLength=e?.maxMapLength??ve.UINT32_MAX,this.maxExtLength=e?.maxExtLength??ve.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Dd,this.mapKeyConverter=e?.mapKeyConverter??vd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=tt,this.stack.reset()}setBuffer(e){let n=(0,so.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===tt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,so.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(u){if(!(u instanceof RangeError))throw u}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,yr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new oe.DecodeError(`Unrecognized type byte: ${(0,yr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===mr)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===nt){if(n==="__proto__")throw new oe.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=oo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=nt;continue e}}return n}}readHeadByte(){return this.headByte===tt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=tt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new oe.DecodeError(`Unrecognized array type byte: ${(0,yr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new oe.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new oe.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new oe.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===nt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new oe.DecodeError(`Max length exceeded: bin length (${e}) 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po=uo();Object.defineProperty(M,"decode",{enumerable:!0,get:function(){return po.decode}});Object.defineProperty(M,"decodeMulti",{enumerable:!0,get:function(){return po.decodeMulti}});var xr=ho();Object.defineProperty(M,"decodeAsync",{enumerable:!0,get:function(){return xr.decodeAsync}});Object.defineProperty(M,"decodeArrayStream",{enumerable:!0,get:function(){return xr.decodeArrayStream}});Object.defineProperty(M,"decodeMultiStream",{enumerable:!0,get:function(){return xr.decodeMultiStream}});var Ld=on();Object.defineProperty(M,"Decoder",{enumerable:!0,get:function(){return Ld.Decoder}});var jd=Zt();Object.defineProperty(M,"DecodeError",{enumerable:!0,get:function(){return jd.DecodeError}});var Cd=fr();Object.defineProperty(M,"Encoder",{enumerable:!0,get:function(){return Cd.Encoder}});var Fd=nn();Object.defineProperty(M,"ExtensionCodec",{enumerable:!0,get:function(){return Fd.ExtensionCodec}});var Bd=ir();Object.defineProperty(M,"ExtData",{enumerable:!0,get:function(){return 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if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,to.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,to.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,Id.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,no.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,no.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};ee.Encoder=fr});var ro=b(pr=>{"use strict";Object.defineProperty(pr,"__esModule",{value:!0});pr.encode=Ed;var xd=hr();function Ed(t,e){return new xd.Encoder(e).encodeSharedRef(t)}});var so=b(gr=>{"use strict";Object.defineProperty(gr,"__esModule",{value:!0});gr.prettyByte=vd;function vd(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var io=b(sn=>{"use strict";Object.defineProperty(sn,"__esModule",{value:!0});sn.CachedKeyDecoder=void 0;var Ad=Jt(),Td=16,Dd=16,yr=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=Td,n=Dd){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Ad.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};sn.CachedKeyDecoder=yr});var cn=b(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.Decoder=void 0;var mr=so(),Md=rn(),Te=en(),Od=Jt(),oo=dr(),kd=io(),ue=Qt(),wr="array",rt="map_key",ao="map_value",Pd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new ue.DecodeError("The type of key must be string or number but "+typeof t)},_r=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=wr,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===wr){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===ao){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,br=new DataView(new ArrayBuffer(0)),Nd=new Uint8Array(br.buffer);try{br.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var co=new RangeError("Insufficient data"),Ud=new kd.CachedKeyDecoder,Sr=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=br;bytes=Nd;headByte=nt;stack=new _r;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Md.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??Te.UINT32_MAX,this.maxBinLength=e?.maxBinLength??Te.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??Te.UINT32_MAX,this.maxMapLength=e?.maxMapLength??Te.UINT32_MAX,this.maxExtLength=e?.maxExtLength??Te.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Ud,this.mapKeyConverter=e?.mapKeyConverter??Pd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,oo.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,oo.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,mr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new ue.DecodeError(`Unrecognized type byte: ${(0,mr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===wr)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new ue.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=ao;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new ue.DecodeError(`Unrecognized array type byte: ${(0,mr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new ue.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new ue.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new ue.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new ue.DecodeError(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw co;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new ue.DecodeError(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=(0,Te.getUint64)(this.view,this.pos);return this.pos+=8,e}readI64(){let e=(0,Te.getInt64)(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}};on.Decoder=Sr});var lo=b(an=>{"use strict";Object.defineProperty(an,"__esModule",{value:!0});an.decode=Rd;an.decodeMulti=Ld;var uo=cn();function Rd(t,e){return new uo.Decoder(e).decode(t)}function Ld(t,e){return new uo.Decoder(e).decodeMulti(t)}});var po=b(st=>{"use strict";Object.defineProperty(st,"__esModule",{value:!0});st.isAsyncIterable=fo;st.asyncIterableFromStream=ho;st.ensureAsyncIterable=jd;function fo(t){return t[Symbol.asyncIterator]!=null}async function*ho(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function jd(t){return fo(t)?t:ho(t)}});var go=b(it=>{"use strict";Object.defineProperty(it,"__esModule",{value:!0});it.decodeAsync=Cd;it.decodeArrayStream=Fd;it.decodeMultiStream=Bd;var Ir=cn(),xr=po();async function Cd(t,e){let n=(0,xr.ensureAsyncIterable)(t);return new Ir.Decoder(e).decodeAsync(n)}function Fd(t,e){let n=(0,xr.ensureAsyncIterable)(t);return new Ir.Decoder(e).decodeArrayStream(n)}function Bd(t,e){let n=(0,xr.ensureAsyncIterable)(t);return new Ir.Decoder(e).decodeStream(n)}});var mo=b(M=>{"use strict";Object.defineProperty(M,"__esModule",{value:!0});M.decodeTimestampExtension=M.encodeTimestampExtension=M.decodeTimestampToTimeSpec=M.encodeTimeSpecToTimestamp=M.encodeDateToTimeSpec=M.EXT_TIMESTAMP=M.ExtData=M.ExtensionCodec=M.Encoder=M.DecodeError=M.Decoder=M.decodeMultiStream=M.decodeArrayStream=M.decodeAsync=M.decodeMulti=M.decode=M.encode=void 0;var $d=ro();Object.defineProperty(M,"encode",{enumerable:!0,get:function(){return $d.encode}});var yo=lo();Object.defineProperty(M,"decode",{enumerable:!0,get:function(){return yo.decode}});Object.defineProperty(M,"decodeMulti",{enumerable:!0,get:function(){return yo.decodeMulti}});var Er=go();Object.defineProperty(M,"decodeAsync",{enumerable:!0,get:function(){return Er.decodeAsync}});Object.defineProperty(M,"decodeArrayStream",{enumerable:!0,get:function(){return Er.decodeArrayStream}});Object.defineProperty(M,"decodeMultiStream",{enumerable:!0,get:function(){return Er.decodeMultiStream}});var qd=cn();Object.defineProperty(M,"Decoder",{enumerable:!0,get:function(){return qd.Decoder}});var zd=Qt();Object.defineProperty(M,"DecodeError",{enumerable:!0,get:function(){return zd.DecodeError}});var Vd=hr();Object.defineProperty(M,"Encoder",{enumerable:!0,get:function(){return Vd.Encoder}});var Wd=rn();Object.defineProperty(M,"ExtensionCodec",{enumerable:!0,get:function(){return Wd.ExtensionCodec}});var Kd=or();Object.defineProperty(M,"ExtData",{enumerable:!0,get:function(){return 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Available providers: ${kr.join(", ")}`);return t._api_key&&e==="openai"?new xf({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function Tf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),B.renameSync(r,t)}Bo.exports={DEFAULTS:Uo,AVAILABLE_PROVIDERS:kr,PROVIDER_ENV_VARS:Ro,systemConfigPath:Lo,projectConfigPath:jo,credentialsPath:Co,readConfigFile:Pr,loadConfig:vf,loadCredentials:Nr,writeCredentials:Ef,resolveApiKey:Fo,resolveProvider:Af,writeConfigFile:Tf}});var rc=b((up,nc)=>{"use strict";var be=require("fs"),Ie=require("path"),Df=require("readline"),$=Ur(),Rr=Tr(),{OpenAIProvider:Mf}=un(),$o="text-embedding-3-small",qo=1536,zo=1536;function Vo(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function Wo(){let t=Df.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function an(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Ce(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Vo(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,a=>n((a||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",u);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},u=a=>{for(let l of a.toString("utf8")){if(l===` +`),t.close(),process.exit(130)}),t}function ln(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Ko(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` `||l==="\r")return c(),s.write(` `),n(o.trim());if(l===""){c(),s.write(` `),process.exit(130);return}if(l==="")return c(),s.write(` -`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",u)})}function Wo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Ko(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Ho(){return{knowledge:{}}}function Go(t){if(!_e.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=_e.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Yo(t){let e=Se.join(t,"config.json"),n=Se.join(t,"store.msp"),r=Se.join(t,"metadata.json"),s=_e.existsSync(t),i=_e.existsSync(e),o=_e.existsSync(n),c=_e.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function ln({apiKey:t,model:e,dimensions:n}){let s=await new xf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function dn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function Jo(t){let e=$.systemConfigPath(),n=Go(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Ho({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Go(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Yo(){return{knowledge:{}}}function Jo(t){if(!be.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=be.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Xo(t){let e=Ie.join(t,"config.json"),n=Ie.join(t,"store.msp"),r=Ie.join(t,"metadata.json"),s=be.existsSync(t),i=be.existsSync(e),o=be.existsSync(n),c=be.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function dn({apiKey:t,model:e,dimensions:n}){let s=await new Mf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function fn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function Zo(t){let e=$.systemConfigPath(),n=Jo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: -`);let a=n.knowledge;if(process.stdout.write(` provider: ${a.provider==null?"(none \u2014 stub mode)":a.provider} -`),a.model&&process.stdout.write(` model: ${a.model} -`),a.dimensions&&process.stdout.write(` dimensions: ${a.dimensions} +`);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} +`),u.model&&process.stdout.write(` model: ${u.model} +`),u.dimensions&&process.stdout.write(` dimensions: ${u.dimensions} `),process.stdout.write(` -`),!await Ce(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. -`),{provider:a.provider||null,previouslyStub:!a.provider}}else n.exists&&!n.valid?(process.stdout.write(` +`),!await Fe(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. +`),{provider:u.provider||null,previouslyStub:!u.provider}}else n.exists&&!n.valid?(process.stdout.write(` System config at ${e} is not valid: ${n.reason} -`),await Ce(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. +`),await Fe(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. `),process.exit(1))):process.stdout.write(` No system config found at ${e}. Creating a new one. `);let r=n.exists&&n.valid&&!n.knowledge.provider;process.stdout.write(` @@ -50,26 +50,26 @@ Embedding provider: `),process.stdout.write(` openai \u2014 OpenAI embeddings API (requires an API key) `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) -`);let s;for(;s=(await an(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return $.writeConfigFile(e,Ko()),process.stdout.write(` +`);let s;for(;s=(await ln(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". +`);if(s==="skip")return $.writeConfigFile(e,Go()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await an(t,"Embedding model",Fo),o=await an(t,"Vector dimensions",String(Bo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),$.writeConfigFile(e,Wo({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await ln(t,"Embedding model",$o),o=await ln(t,"Vector dimensions",String(qo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),$.writeConfigFile(e,Ho({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let u=$.PROVIDER_ENV_VARS.openai;return await Xo(t,{envVar:u,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function Xo(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`);let a=$.PROVIDER_ENV_VARS.openai;return await Qo(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function Qo(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... -`);try{await ln({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. -`)}catch(c){let{message:u,hint:a}=dn(c);process.stdout.write(`${u} - ${a} +`);try{await dn({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. +`)}catch(c){let{message:a,hint:u}=fn(c);process.stdout.write(`${a} + ${u} `),process.stdout.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. Setup will continue \u2014 indexing will queue until the key is corrected. `)}return}let o=$.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` Found an existing API key in ${s} \u2014 validating via a test embed... -`);try{await ln({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. -`);return}catch(c){let{message:u,hint:a}=dn(c);if(process.stdout.write(`${u} - ${a} -`),!await Ce(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. +`);try{await dn({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. +`);return}catch(c){let{message:a,hint:u}=fn(c);if(process.stdout.write(`${a} + ${u} +`),!await Fe(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await Ef(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Ef(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await Of(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Of(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -85,42 +85,42 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await Vo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await Ko(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... -`);try{await ln({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:u}=dn(o);if(process.stdout.write(`${c} - ${u} +`);try{await dn({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=fn(o);if(process.stdout.write(`${c} + ${a} -`),!await Ce(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. +`),!await Fe(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function Zo(t){let e=Se.resolve(process.cwd(),".workflows",".knowledge"),n=Se.join(e,"config.json"),r=Se.join(e,"store.msp"),s=Se.join(e,"metadata.json"),i=Yo(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}}async function ec(t){let e=Ie.resolve(process.cwd(),".workflows",".knowledge"),n=Ie.join(e,"config.json"),r=Ie.join(e,"store.msp"),s=Ie.join(e,"metadata.json"),i=Xo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} -`),!await Ce(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. +`),!await Fe(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);_e.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Ho()),process.stdout.write(` config.json written -`));let o=$.loadConfig(),c=o.provider||null,u=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:$o;if(!i.storeExists||i.fullyInitialised){let a=await Ur.createStore(u);await Ur.saveStore(a,r),process.stdout.write(` store.msp written (${u} dimensions) -`)}return(!i.metadataExists||i.fullyInitialised)&&(Ur.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?u:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:u}}async function Qo(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` +`);be.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Yo()),process.stdout.write(` config.json written +`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:zo;if(!i.storeExists||i.fullyInitialised){let u=await Rr.createStore(a);await Rr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) +`)}return(!i.metadataExists||i.fullyInitialised)&&(Rr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written +`)),{created:!0,provider:c,dimensions:a}}async function tc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function Af(t,e,n){qo();let r=Se.resolve(process.cwd(),".workflows");_e.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=zo(),i;try{process.stdout.write(` +`)}}async function kf(t,e,n){Vo();let r=Ie.resolve(process.cwd(),".workflows");be.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=Wo(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await Jo(s),await Zo(s)}finally{s.close()}await Qo(t,n),process.stdout.write(` +`),i=await Zo(s),await ec(s)}finally{s.close()}await tc(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}ec.exports={cmdSetup:Af,requireTTY:qo,createPrompter:zo,ask:an,askYesNo:Ce,askSecret:Vo,buildSystemConfigOpenAI:Wo,buildSystemConfigStub:Ko,buildProjectConfigEmpty:Ho,detectSystemConfig:Go,detectProjectInit:Yo,validateApiKey:ln,describeValidationError:dn,ensureOpenAIKey:Xo,runSystemConfigStep:Jo,runProjectInitStep:Zo,runInitialIndexStep:Qo,KEYWORD_ONLY_DIMENSIONS:$o,OPENAI_DEFAULT_MODEL:Fo,OPENAI_DEFAULT_DIMENSIONS:Bo}});var T=require("fs"),q=require("path"),E=vr(),ic=Ao(),{StubProvider:vf}=Dr(),{OpenAIProvider:Tf}=un(),Fe=Nr(),oc=tc(),Lr=["research","discussion","investigation","specification"],Df=T.existsSync(q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"))?q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"):q.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs"),ct=[1e3,2e3,4e3],Mf=5,jr=1536,nc=!1;function cc(t){let e=[],n={},r=0;for(;r [options] +`)}nc.exports={cmdSetup:kf,requireTTY:Vo,createPrompter:Wo,ask:ln,askYesNo:Fe,askSecret:Ko,buildSystemConfigOpenAI:Ho,buildSystemConfigStub:Go,buildProjectConfigEmpty:Yo,detectSystemConfig:Jo,detectProjectInit:Xo,validateApiKey:dn,describeValidationError:fn,ensureOpenAIKey:Qo,runSystemConfigStep:Zo,runProjectInitStep:ec,runInitialIndexStep:tc,KEYWORD_ONLY_DIMENSIONS:zo,OPENAI_DEFAULT_MODEL:$o,OPENAI_DEFAULT_DIMENSIONS:qo}});var v=require("fs"),q=require("path"),E=Tr(),ac=To(),{StubProvider:Pf}=Mr(),{OpenAIProvider:Nf}=un(),Be=Ur(),uc=rc(),Cr=["research","discussion","investigation","specification"],Uf=v.existsSync(q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"))?q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"):q.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs"),at=[1e3,2e3,4e3],Rf=5,Fr=1536,sc=!1;function lc(t){let e=[],n={},r=0;for(;r [options] Commands: index Index a file or all pending artifacts @@ -138,56 +138,59 @@ Options: --phase Filter by phase --topic Filter by topic --limit Limit number of results - --dry-run Preview without making changes`;function ce(){return q.resolve(process.cwd(),".workflows",".knowledge")}function ue(){return q.join(ce(),"store.msp")}function be(){return q.join(ce(),"metadata.json")}function Te(){return q.join(ce(),".lock")}function Of(t){return new Promise(e=>setTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ct,s;for(let i=0;isetTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;iFr(s,o,n,r),{maxAttempts:3,backoff:ct});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await dc(n,r,Mf)}async function Fr(t,e,n,r){let s=Pf(e.workUnit),i=q.join(__dirname,"..","chunking",e.phase+".json");if(!T.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(T.readFileSync(i,"utf8")),c=q.resolve(t),u=T.readFileSync(c,"utf8"),a=ic.chunk(u,o);if(a.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ce(),d=ue(),f=be(),p=Te();T.existsSync(l)||T.mkdirSync(l,{recursive:!0});let g,y,h=T.existsSync(d),m=T.existsSync(f);h&&(g=await E.loadStore(d)),m&&(y=E.readMetadata(f),Array.isArray(y.pending)||(y.pending=[]));let w,S;if(y){let A=ac(y,n,r);w=A.mode,S=A.provider}else r?(w="full",S=r):(w="keyword-only",S=null);if(!g){let A=S?S.dimensions():n.dimensions||jr;g=await E.createStore(A)}let _=null;if(w==="full"&&S&&a.length>0){let A=a.map(k=>k.content);_=await S.embedBatch(A)}let I=Date.now(),v=o.confidence||"medium",D=a.map((A,k)=>{let De=String(k+1).padStart(3,"0"),X={id:`${e.workUnit}-${e.phase}-${e.topic}-${De}`,content:A.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:v,source_file:t,timestamp:I};return _&&(X.embedding=_[k]),X});return await E.withLock(p,async()=>{h?g=await E.loadStore(d):T.existsSync(d)&&(g=await E.loadStore(d)),await E.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let k of D)await E.insertDocument(g,k);await E.saveStore(g,d);let A=T.existsSync(f)?E.readMetadata(f):null;if(A)A.last_indexed=new Date().toISOString(),Array.isArray(A.pending)||(A.pending=[]),E.writeMetadata(f,A);else{let k={provider:S?n.provider:null,model:S?S.model():null,dimensions:S?S.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};E.writeMetadata(f,k)}}),D.length}function ot(t){let{execFileSync:e}=require("child_process");return e("node",[Df,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}async function lc(t,e,n,r){return(await E.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function Br(){let t=[],e;try{let n=ot(["list"]);e=JSON.parse(n)}catch{return t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Lr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let a=ot(["resolve",`${r}.${s}.${o}`]).trim();a&&T.existsSync(q.resolve(a))&&t.push({file:a,workUnit:r,phase:s,topic:o})}catch{}}}}return t}async function fn(t,e,n){let r=Br(),s=ce(),i=ue();T.existsSync(s)||T.mkdirSync(s,{recursive:!0});let o=null;T.existsSync(i)&&(o=await E.loadStore(i));let c=0,u=0,a=0;for(let l of r){if(o&&await lc(o,l.workUnit,l.phase,l.topic)){a++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await ut(()=>Fr(l.file,d,e,n),{maxAttempts:3,backoff:ct});process.stdout.write(`Indexing ${l.file}... ${f} chunks -`),c++,u+=f,T.existsSync(i)&&(o=await E.loadStore(i))}catch(d){await Nf(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. -`)}}await dc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${u} chunks). ${a} already indexed. -`)}async function Nf(t,e){let n=be(),r=ce(),s=Te();T.existsSync(r)||T.mkdirSync(r,{recursive:!0}),await E.withLock(s,async()=>{let i;T.existsSync(n)?i=E.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(u=>u.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};o>=0?i.pending[o]=c:i.pending.push(c),E.writeMetadata(n,i)})}async function Rr(t){let e=be(),n=Te();T.existsSync(e)&&await E.withLock(n,async()=>{if(!T.existsSync(e))return;let r=E.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),E.writeMetadata(e,r))})}async function dc(t,e,n){let r=be();if(!T.existsSync(r))return;let s=E.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){let c=q.resolve(o.file);if(!T.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. -`),await Rr(o.file);continue}let u;try{u=Cr(o.file)}catch{await Rr(o.file);continue}try{await ut(()=>Fr(o.file,u,t,e),{maxAttempts:3,backoff:ct}),await Rr(o.file)}catch{}}}var Uf={high:4,medium:3,"low-medium":2,low:1};function Rf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Lf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}function jf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;e&&i.work_unit===e&&(o+=.1);let c=Uf[i.confidence]||0;o+=c*.01;let u=((i.timestamp||0)-r)/s;return o+=u*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Cf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. + Current config has no provider configured.`)}async function Cf(t,e,n,r){if(t.length===0)return hn(e,n,r);let s=t[0],i=q.resolve(s);v.existsSync(i)||(process.stderr.write(`File not found: ${i} +`),process.exit(1));let o=Br(s),c=await ut(()=>$r(s,o,n,r),{maxAttempts:3,backoff:at});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await pc(n,r,Rf)}async function $r(t,e,n,r){let s=jf(e.workUnit),i=q.join(__dirname,"..","chunking",e.phase+".json");if(!v.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(v.readFileSync(i,"utf8")),c=q.resolve(t),a=v.readFileSync(c,"utf8"),u=ac.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=X(),p=le();v.existsSync(l)||v.mkdirSync(l,{recursive:!0});let g,y,h=v.existsSync(d),m=v.existsSync(f);h&&(g=await E.loadStore(d)),m&&(y=E.readMetadata(f),Array.isArray(y.pending)||(y.pending=[]));let w,S;if(y){let A=fc(y,n,r);w=A.mode,S=A.provider}else r?(w="full",S=r):(w="keyword-only",S=null);if(!g){let A=S?S.dimensions():n.dimensions||Fr;g=await E.createStore(A)}let _=null;if(w==="full"&&S&&u.length>0){let A=u.map(P=>P.content);_=await S.embedBatch(A)}let I=Date.now(),T=o.confidence||"medium",D=u.map((A,P)=>{let Me=String(P+1).padStart(3,"0"),Z={id:`${e.workUnit}-${e.phase}-${e.topic}-${Me}`,content:A.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return _&&(Z.embedding=_[P]),Z});return await E.withLock(p,async()=>{h?g=await E.loadStore(d):v.existsSync(d)&&(g=await E.loadStore(d)),await E.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let P of D)await E.insertDocument(g,P);await E.saveStore(g,d);let A=v.existsSync(f)?E.readMetadata(f):null;if(A)A.last_indexed=new Date().toISOString(),Array.isArray(A.pending)||(A.pending=[]),E.writeMetadata(f,A);else{let P={provider:S?n.provider:null,model:S?S.model():null,dimensions:S?S.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};E.writeMetadata(f,P)}}),D.length}function ct(t){let{execFileSync:e}=require("child_process");return e("node",[Uf,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}async function hc(t,e,n,r){return(await E.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function qr(){let t=[],e;try{let n=ct(["list"]);e=JSON.parse(n)}catch{return t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Cr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let u=ct(["resolve",`${r}.${s}.${o}`]).trim();u&&v.existsSync(q.resolve(u))&&t.push({file:u,workUnit:r,phase:s,topic:o})}catch{}}}}return t}async function hn(t,e,n){let r=qr(),s=ne(),i=re();v.existsSync(s)||v.mkdirSync(s,{recursive:!0});let o=null;v.existsSync(i)&&(o=await E.loadStore(i));let c=0,a=0,u=0;for(let l of r){if(o&&await hc(o,l.workUnit,l.phase,l.topic)){u++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await ut(()=>$r(l.file,d,e,n),{maxAttempts:3,backoff:at});process.stdout.write(`Indexing ${l.file}... ${f} chunks +`),c++,a+=f,v.existsSync(i)&&(o=await E.loadStore(i))}catch(d){await Ff(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. +`)}}await pc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${u} already indexed. +`)}async function Ff(t,e){let n=X(),r=ne(),s=le();v.existsSync(r)||v.mkdirSync(r,{recursive:!0}),await E.withLock(s,async()=>{let i;v.existsSync(n)?i=E.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};o>=0?i.pending[o]=c:i.pending.push(c),E.writeMetadata(n,i)})}async function Lr(t){let e=X(),n=le();v.existsSync(e)&&await E.withLock(n,async()=>{if(!v.existsSync(e))return;let r=E.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),E.writeMetadata(e,r))})}async function pc(t,e,n){let r=X();if(!v.existsSync(r))return;let s=E.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){let c=q.resolve(o.file);if(!v.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. +`),await Lr(o.file);continue}let a;try{a=Br(o.file)}catch{await Lr(o.file);continue}try{await ut(()=>$r(o.file,a,t,e),{maxAttempts:3,backoff:at}),await Lr(o.file)}catch{}}}var jr=10;function De(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function gc(t,e){let n=X(),r=ne(),s=le();v.existsSync(r)||v.mkdirSync(r,{recursive:!0}),await E.withLock(s,async()=>{let i;v.existsSync(n)?i=E.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=De(t),c=i.pending_removals.findIndex(u=>De(u)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let u=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(u.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});E.writeMetadata(n,i)})}async function oc(t){let e=X(),n=le();v.existsSync(e)&&await E.withLock(n,async()=>{if(!v.existsSync(e))return;let r=E.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=De(t);r.pending_removals=r.pending_removals.filter(i=>De(i)!==s),E.writeMetadata(e,r)})}async function yc(){let t=X();if(!v.existsSync(t))return;let e=E.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=jr){process.stderr.write(`Pending removal for ${De(r)} exceeded ${jr} attempts \u2014 evicting. +`),await oc(r);continue}try{await mc({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${De(r)}. +`),await oc(r)}catch(s){try{await gc({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function mc(t){let e=re(),n=le();if(!v.existsSync(e))return 0;let r=0;return await E.withLock(n,async()=>{let s=await E.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await E.removeByFilter(s,i),await E.saveStore(s,e)}),r}var Bf={high:4,medium:3,"low-medium":2,low:1};function $f(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function qf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}function zf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;e&&i.work_unit===e&&(o+=.1);let c=Bf[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Vf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} - Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Ff(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N] -`),process.exit(1));let s=t,i=e.limit||10,o=ue(),c=be();if(!T.existsSync(o)){process.stdout.write(`[0 results] -`);return}let u=await E.loadStore(o),a="keyword-only",l=null,d=null;T.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. 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Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=E.readMetadata(c),p=Vf(f,n,r);u=p.mode,l=p.provider,u==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":u==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let _=e.phase.split(",").map(I=>I.trim());g.phase=_.length===1?{eq:_[0]}:{in:_}}if(e.workType){let _=e.workType.split(",").map(I=>I.trim());g.work_type=_.length===1?{eq:_[0]}:{in:_}}if(e.topic){let _=e.topic.split(",").map(I=>I.trim());g.topic=_.length===1?{eq:_[0]}:{in:_}}let y=n.similarity_threshold||.8,h=Object.keys(g).length>0?g:void 0,m=new Map;for(let _ of s){let I;if(u==="full"&&l){let T=await ut(()=>l.embed(_),{maxAttempts:3,backoff:at});I=await E.searchHybrid(a,{term:_,vector:T,where:h,limit:i*2,similarity:y})}else I=await E.searchFulltext(a,{term:_,where:h,limit:i*2});for(let T of I){let D=m.get(T.id);(!D||T.score>D.score)&&m.set(T.id,T)}}let w=zf(Array.from(m.values()),e.workUnit);w.length>i&&(w=w.slice(0,i));let S=[];d&&S.push(d),S.push(`[${w.length} results]`);for(let _ of w){S.push("");let I=qf(_.timestamp);S.push(`[${_.phase} | ${_.work_unit}/${_.topic} | ${_.confidence} | ${I}]`),S.push(_.content),S.push(`Source: ${_.source_file}`)}process.stdout.write(S.join(` `)+` -`)}async function Bf(){let t=ce(),e=q.join(t,"config.json"),n=ue();if(!T.existsSync(t)){process.stdout.write(`not-ready -`);return}if(!T.existsSync(e)){process.stdout.write(`not-ready -`);return}if(!T.existsSync(n)){process.stdout.write(`not-ready +`)}async function Kf(){let t=ne(),e=q.join(t,"config.json"),n=re();if(!v.existsSync(t)){process.stdout.write(`not-ready +`);return}if(!v.existsSync(e)){process.stdout.write(`not-ready +`);return}if(!v.existsSync(n)){process.stdout.write(`not-ready `);return}try{await E.loadStore(n)}catch{process.stdout.write(`not-ready `);return}process.stdout.write(`ready -`)}async function $f(){let t=ce(),e=ue(),n=be(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!T.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` +`)}async function Hf(){let t=ne(),e=re(),n=X(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!v.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await E.loadStore(e),i=await E.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},u={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,u[h.work_type]=(u[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,m]of Object.entries(o))r.push(` ${h}: ${m}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,m]of Object.entries(c))r.push(` ${h}: ${m}`)}if(Object.keys(u).length>0){r.push(""),r.push("By work type:");for(let[h,m]of Object.entries(u))r.push(` ${h}: ${m}`)}r.push("");let l=(T.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),T.existsSync(n)){let h=E.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let w of h.pending)r.push(` ${w.file} \u2014 ${w.error} (${w.failed_at})`)}let m;try{m=Fe.loadConfig()}catch{m=null}if(m){let w=Fe.resolveProvider(m);h.provider&&w&&(h.provider!==m.provider||h.model!==w.model()||h.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(h.provider===null||h.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),T.existsSync(q.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=Br(),m=[];for(let w of h)await lc(s,w.workUnit,w.phase,w.topic)||m.push(w.file);if(m.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${m.length}`);for(let w of m)r.push(` ${w}`)}}catch{}let p=[];for(let h of Object.keys(o)){let m=fc(h);m&&m.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${h}`)}let g=i.filter(h=>h.phase==="specification"),y=new Set(g.map(h=>`${h.work_unit}.specification.${h.topic}`));for(let h of y)try{ot(["get",h,"status"]).trim()==="superseded"&&p.push(`Superseded spec still indexed: ${h}`)}catch{}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let h of p)r.push(` ${h}`)}process.stdout.write(r.join(` +`);return}let s=await E.loadStore(e),i=await E.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,a[h.work_type]=(a[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,m]of Object.entries(o))r.push(` ${h}: ${m}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,m]of Object.entries(c))r.push(` ${h}: ${m}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[h,m]of Object.entries(a))r.push(` ${h}: ${m}`)}r.push("");let l=(v.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),v.existsSync(n)){let h=E.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let w of h.pending)r.push(` ${w.file} \u2014 ${w.error} (${w.failed_at})`)}if(Array.isArray(h.pending_removals)&&h.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${h.pending_removals.length}`);for(let w of h.pending_removals)r.push(` ${De(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${jr})`)}let m;try{m=Be.loadConfig()}catch{m=null}if(m){let w=Be.resolveProvider(m);h.provider&&w&&(h.provider!==m.provider||h.model!==w.model()||h.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(h.provider===null||h.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),v.existsSync(q.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=qr(),m=[];for(let w of h)await hc(s,w.workUnit,w.phase,w.topic)||m.push(w.file);if(m.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${m.length}`);for(let w of m)r.push(` ${w}`)}}catch{}let p=[];for(let h of Object.keys(o)){let m=wc(h);m&&m.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${h}`)}let g=i.filter(h=>h.phase==="specification"),y=new Set(g.map(h=>`${h.work_unit}.specification.${h.topic}`));for(let h of y)try{ct(["get",h,"status"]).trim()==="superseded"&&p.push(`Superseded spec still indexed: ${h}`)}catch{}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let h of p)r.push(` ${h}`)}process.stdout.write(r.join(` `)+` -`)}async function qf(t,e,n,r){let s=ue(),i=be(),o=Te();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function Gf(t,e,n,r){let s=re(),i=X(),o=le();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. -Type 'rebuild' to confirm: `),await zf()!=="rebuild"&&(process.stderr.write(`Aborted. -`),process.exit(1)),Br().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +Type 'rebuild' to confirm: `),await Yf()!=="rebuild"&&(process.stderr.write(`Aborted. +`),process.exit(1)),qr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1)),await E.withLock(o,async()=>{T.existsSync(s)&&T.unlinkSync(s),T.existsSync(i)&&T.unlinkSync(i);let a=r?r.dimensions():n&&n.dimensions||jr,l=await E.createStore(a);await E.saveStore(l,s),E.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. -`),await fn(e,n,r)}function zf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Vf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`),process.exit(1)),await E.withLock(o,async()=>{v.existsSync(s)&&v.unlinkSync(s),v.existsSync(i)&&v.unlinkSync(i);let u=r?r.dimensions():n&&n.dimensions||Fr,l=await E.createStore(u);await E.saveStore(l,s),E.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`),await hn(e,n,r)}function Yf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Jf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1));let n=ue(),r=Te();if(!T.existsSync(n)){let o=sc(e);process.stdout.write(`Removed 0 chunks for ${o} -`);return}let s=0;await E.withLock(r,async()=>{let o=await E.loadStore(n),c={work_unit:{eq:e.workUnit}};e.phase&&(c.phase={eq:e.phase}),e.topic&&(c.topic={eq:e.topic}),s=await E.removeByFilter(o,c),await E.saveStore(o,n)});let i=sc(e);process.stdout.write(`Removed ${s} chunks for ${i} -`)}function sc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function fc(t){try{let e=ot(["get",t,"status"]).trim(),n=null;try{n=ot(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch{}return{status:e,completed_at:n}}catch{return null}}async function Wf(t,e,n){let r=ue(),s=Te(),i=n&&n.decay_months!==void 0?n.decay_months:Fe.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`),process.exit(1)),await yc();let n=re();if(!v.existsSync(n)){let s=cc(e);process.stdout.write(`Removed 0 chunks for ${s} +`);return}let r=cc(e);try{let s=await mc(e);process.stdout.write(`Removed ${s} chunks for ${r} +`)}catch(s){await gc(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. +`),process.exit(1)}}function cc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function wc(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch{}return{status:e,completed_at:n}}catch{return null}}async function Xf(t,e,n){await yc();let r=re(),s=le(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!T.existsSync(r))return;let c=await E.loadStore(r),u=new Date,a=new Date(u);a.setMonth(a.getMonth()-o);let l=await E.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let h of l)d[h.work_unit]||(d[h.work_unit]=[]),d[h.work_unit].push(h);let f=[],p=[];for(let[h,m]of Object.entries(d)){let w=fc(h);if(!w||w.status!=="completed"||!w.completed_at)continue;let S=Rf(w.completed_at);if(!S||isNaN(S.getTime()))continue;let _=new Date(S);if(_.setMonth(_.getMonth()+o),_>u)continue;let I=m.filter(D=>D.phase!=="specification");if(I.length===0)continue;let v=new Set(I.map(D=>D.phase));f.push({workUnit:h,count:I.length,phases:v});for(let D of I)p.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((h,m)=>h+m.count,0);if(e.dryRun){let h=[];h.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let m of f)h.push(` \u2022 ${m.workUnit}: ${m.count} chunks (${Array.from(m.phases).join(", ")})`);process.stdout.write(h.join(` +`),process.exit(1));let o=i;if(!v.existsSync(r))return;let c=await E.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await E.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let h of l)d[h.work_unit]||(d[h.work_unit]=[]),d[h.work_unit].push(h);let f=[],p=[];for(let[h,m]of Object.entries(d)){let w=wc(h);if(!w||w.status!=="completed"||!w.completed_at)continue;let S=$f(w.completed_at);if(!S||isNaN(S.getTime()))continue;let _=new Date(S);if(_.setMonth(_.getMonth()+o),_>a)continue;let I=m.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:h,count:I.length,phases:T});for(let D of I)p.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((h,m)=>h+m.count,0);if(e.dryRun){let h=[];h.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let m of f)h.push(` \u2022 ${m.workUnit}: ${m.count} chunks (${Array.from(m.phases).join(", ")})`);process.stdout.write(h.join(` `)+` `);return}await E.withLock(s,async()=>{let h=await E.loadStore(r),m=new Set;for(let w of p){let S=`${w.work_unit}|${w.phase}|${w.topic}`;m.has(S)||(m.add(S),await E.removeByIdentity(h,w))}await E.saveStore(h,r)});let y=[];y.push(`Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let h of f)y.push(` \u2022 ${h.workUnit}: ${h.count} chunks (${Array.from(h.phases).join(", ")})`);process.stdout.write(y.join(` `)+` -`)}async function hc(){let t=process.argv.slice(2),{positional:e,flags:n}=cc(t),r=e[0],s=e.slice(1),i=uc(n);r||(process.stderr.write(rc+` -`),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Fe.loadConfig(),c=Fe.resolveProvider(o)),r){case"index":await kf(s,i,o,c);break;case"query":await Ff(s,i,o,c);break;case"check":await Bf(s,i,o,c);break;case"status":await $f();break;case"remove":await Vf(s,i,o,c);break;case"compact":await Wf(s,i,o,c);break;case"rebuild":await qf(s,i,o,c);break;case"setup":await oc.cmdSetup(fn,s,i);break;default:process.stderr.write(`Unknown command "${r}". +`)}async function _c(){let t=process.argv.slice(2),{positional:e,flags:n}=lc(t),r=e[0],s=e.slice(1),i=dc(n);r||(process.stderr.write(ic+` +`),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Be.loadConfig(),c=Be.resolveProvider(o)),r){case"index":await Cf(s,i,o,c);break;case"query":await Wf(s,i,o,c);break;case"check":await Kf(s,i,o,c);break;case"status":await Hf();break;case"remove":await Jf(s,i,o,c);break;case"compact":await Xf(s,i,o,c);break;case"rebuild":await Gf(s,i,o,c);break;case"setup":await uc.cmdSetup(hn,s,i);break;default:process.stderr.write(`Unknown command "${r}". -${rc} -`),process.exit(1)}}module.exports={parseArgs:cc,buildOptions:uc,deriveIdentity:Cr,resolveProviderState:ac,withRetry:ut,main:hc,cmdIndexBulk:fn,StubProvider:vf,OpenAIProvider:Tf,store:E,chunker:ic,config:Fe,setup:oc,knowledgeDir:ce,storePath:ue,metadataPath:be,lockFilePath:Te,INDEXED_PHASES:Lr,KEYWORD_ONLY_DIMENSIONS:jr};require.main===module&&hc().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` +${ic} +`),process.exit(1)}}module.exports={parseArgs:lc,buildOptions:dc,deriveIdentity:Br,resolveProviderState:fc,withRetry:ut,main:_c,cmdIndexBulk:hn,StubProvider:Pf,OpenAIProvider:Nf,store:E,chunker:ac,config:Be,setup:uc,knowledgeDir:ne,storePath:re,metadataPath:X,lockFilePath:le,INDEXED_PHASES:Cr,KEYWORD_ONLY_DIMENSIONS:Fr};require.main===module&&_c().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/skills/workflow-specification-process/references/promote-to-cross-cutting.md b/skills/workflow-specification-process/references/promote-to-cross-cutting.md index e640d2245..e7bde2a0e 100644 --- a/skills/workflow-specification-process/references/promote-to-cross-cutting.md +++ b/skills/workflow-specification-process/references/promote-to-cross-cutting.md @@ -81,7 +81,7 @@ If either command fails, display the error but do not block — the move is alre ``` ⚑ Knowledge warning {error details} - The discussion is moved. You can run knowledge index/remove manually later. + The discussion is moved. Removals are queued automatically (retry on next `knowledge remove` / `knowledge compact`). Index the moved discussion manually if the automatic background index did not run. ``` → Proceed to **D. Move Specification**. @@ -143,7 +143,7 @@ If the remove command fails, display the error but do not block — the promotio ``` ⚑ Knowledge removal warning {error details} - The spec is promoted. You can run knowledge remove manually later. + The spec is promoted. The removal has been queued and will retry automatically on the next `knowledge remove` or `knowledge compact` call. ``` → Proceed to **F. Commit and Display**. diff --git a/skills/workflow-specification-process/references/spec-completion.md b/skills/workflow-specification-process/references/spec-completion.md index 1de5d59b3..9b05eab91 100644 --- a/skills/workflow-specification-process/references/spec-completion.md +++ b/skills/workflow-specification-process/references/spec-completion.md @@ -174,7 +174,7 @@ If the remove command fails, display the error but do not block — the superses ``` ⚑ Knowledge removal warning {error details} - The spec is superseded. You can run knowledge remove manually later. + The spec is superseded. The removal has been queued and will retry automatically on the next `knowledge remove` or `knowledge compact` call. ``` 3. Inform the user which topics were updated diff --git a/skills/workflow-start/references/manage-work-unit.md b/skills/workflow-start/references/manage-work-unit.md index 5abc1dd16..a72832317 100644 --- a/skills/workflow-start/references/manage-work-unit.md +++ b/skills/workflow-start/references/manage-work-unit.md @@ -259,7 +259,7 @@ If the remove command fails, display the error but do not block — the cancella ``` ⚑ Knowledge removal warning {error details} - The work unit is cancelled. You can run knowledge remove manually later. + The work unit is cancelled. The removal has been queued and will retry automatically on the next `knowledge remove` or `knowledge compact` call. ``` Commit: `workflow({selected.name}): mark as cancelled` diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 6fea7f535..4dfd52c7c 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -745,6 +745,134 @@ async function processPendingQueue(cfg, provider, limit) { } } +// --------------------------------------------------------------------------- +// Pending removal queue — mirrors the pending-index queue but for failed +// `knowledge remove` calls (lock timeout, store I/O error). Without this, +// a cancelled/superseded/promoted work unit's stale chunks persist in the +// store until the user manually retries. +// --------------------------------------------------------------------------- + +const REMOVAL_MAX_ATTEMPTS = 10; + +function removalKey(r) { + return `${r.workUnit}|${r.phase || ''}|${r.topic || ''}`; +} + +async function addPendingRemoval(opts, errorMsg) { + const mp = metadataPath(); + const kDir = knowledgeDir(); + const lp = lockFilePath(); + if (!fs.existsSync(kDir)) fs.mkdirSync(kDir, { recursive: true }); + + await store.withLock(lp, async () => { + let metadata; + if (fs.existsSync(mp)) { + metadata = store.readMetadata(mp); + } else { + metadata = { + provider: null, + model: null, + dimensions: null, + last_indexed: null, + pending: [], + pending_removals: [], + }; + } + if (!Array.isArray(metadata.pending_removals)) metadata.pending_removals = []; + + const key = removalKey(opts); + const existing = metadata.pending_removals.findIndex((r) => removalKey(r) === key); + const base = { + workUnit: opts.workUnit, + phase: opts.phase || null, + topic: opts.topic || null, + queued_at: new Date().toISOString(), + error: errorMsg, + }; + if (existing >= 0) { + const prior = metadata.pending_removals[existing]; + metadata.pending_removals[existing] = { ...base, attempts: (prior.attempts || 0) + 1 }; + } else { + metadata.pending_removals.push({ ...base, attempts: 1 }); + } + store.writeMetadata(mp, metadata); + }); +} + +async function removePendingRemoval(opts) { + const mp = metadataPath(); + const lp = lockFilePath(); + if (!fs.existsSync(mp)) return; + + await store.withLock(lp, async () => { + if (!fs.existsSync(mp)) return; + const metadata = store.readMetadata(mp); + if (!Array.isArray(metadata.pending_removals)) return; + const key = removalKey(opts); + metadata.pending_removals = metadata.pending_removals.filter((r) => removalKey(r) !== key); + store.writeMetadata(mp, metadata); + }); +} + +// Lock semantics mirror processPendingQueue: never call while holding the +// store lock — each queued retry acquires the lock itself. +async function processPendingRemovals() { + const mp = metadataPath(); + if (!fs.existsSync(mp)) return; + + const metadata = store.readMetadata(mp); + if (!Array.isArray(metadata.pending_removals) || metadata.pending_removals.length === 0) return; + + const toProcess = metadata.pending_removals.slice(); + + for (const item of toProcess) { + if ((item.attempts || 0) >= REMOVAL_MAX_ATTEMPTS) { + process.stderr.write( + `Pending removal for ${removalKey(item)} exceeded ${REMOVAL_MAX_ATTEMPTS} attempts — evicting.\n` + ); + await removePendingRemoval(item); + continue; + } + + try { + await performRemoval({ workUnit: item.workUnit, phase: item.phase, topic: item.topic }); + process.stderr.write(`Drained pending removal for ${removalKey(item)}.\n`); + await removePendingRemoval(item); + } catch (err) { + // Still failing — bump attempts so we eventually evict. + try { + await addPendingRemoval( + { workUnit: item.workUnit, phase: item.phase, topic: item.topic }, + err.message + ); + } catch (_) { + // Metadata write failed — the next invocation will retry. + } + } + } +} + +// Perform the actual remove-by-filter operation under the store lock. +// Extracted from cmdRemove so the pending-removal queue can invoke it +// without re-running the CLI layer (argument parsing, exit codes). +async function performRemoval(opts) { + const sp = storePath(); + const lp = lockFilePath(); + + if (!fs.existsSync(sp)) return 0; + + let removed = 0; + await store.withLock(lp, async () => { + const db = await store.loadStore(sp); + const where = { work_unit: { eq: opts.workUnit } }; + if (opts.phase) where.phase = { eq: opts.phase }; + if (opts.topic) where.topic = { eq: opts.topic }; + removed = await store.removeByFilter(db, where); + await store.saveStore(db, sp); + }); + return removed; +} + // --------------------------------------------------------------------------- // Query command // --------------------------------------------------------------------------- @@ -1103,6 +1231,15 @@ async function cmdStatus() { } } + // 4b. Pending removals. + if (Array.isArray(metadata.pending_removals) && metadata.pending_removals.length > 0) { + out.push(''); + out.push(`Pending removals: ${metadata.pending_removals.length}`); + for (const r of metadata.pending_removals) { + out.push(` ${removalKey(r)} — ${r.error} (attempt ${r.attempts || 1}/${REMOVAL_MAX_ATTEMPTS})`); + } + } + // 6. Provider mismatch warning. let cfg; try { cfg = config.loadConfig(); } catch (_) { cfg = null; } @@ -1318,30 +1455,29 @@ async function cmdRemove(_args, options) { process.exit(1); } - const sp = storePath(); - const lp = lockFilePath(); + // Drain any previously-failed removals first so stale chunks from earlier + // cancellations/supersessions don't linger just because the store was + // briefly locked. + await processPendingRemovals(); + const sp = storePath(); if (!fs.existsSync(sp)) { const desc = formatRemoveDesc(options); process.stdout.write(`Removed 0 chunks for ${desc}\n`); return; } - let removed = 0; - - await store.withLock(lp, async () => { - const db = await store.loadStore(sp); - - const where = { work_unit: { eq: options.workUnit } }; - if (options.phase) where.phase = { eq: options.phase }; - if (options.topic) where.topic = { eq: options.topic }; - - removed = await store.removeByFilter(db, where); - await store.saveStore(db, sp); - }); - const desc = formatRemoveDesc(options); - process.stdout.write(`Removed ${removed} chunks for ${desc}\n`); + try { + const removed = await performRemoval(options); + process.stdout.write(`Removed ${removed} chunks for ${desc}\n`); + } catch (err) { + await addPendingRemoval(options, err.message); + process.stderr.write( + `Removal of ${desc} failed (${err.message}). Queued for automatic retry on next remove/compact.\n` + ); + process.exit(1); + } } function formatRemoveDesc(options) { @@ -1378,6 +1514,9 @@ function getWorkUnitMeta(workUnit) { } async function cmdCompact(_args, options, cfg) { + // Drain any previously-failed removals first. + await processPendingRemovals(); + const sp = storePath(); const lp = lockFilePath(); diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 4fcd6dc56..60a22784d 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -1403,6 +1403,35 @@ status_output=$(run_kb status 2>&1) assert_eq "bulk index skipped cancelled wu" "true" "$(echo "$status_output" | grep -q 'cancelled-wu' && echo false || echo true)" teardown_project +# --- Test 81: Failed remove queues for retry, subsequent remove drains queue --- +echo "Test 81: Pending removal queue" +setup_project +create_work_unit "drop-me" "feature" "Drop" +write_stub_config +create_discussion_file "drop-me" "drop-me" +run_kb index .workflows/drop-me/discussion/drop-me.md >/dev/null 2>&1 +# Seed a pending removal by editing metadata directly (simulates a prior failure) +meta="$TEST_ROOT/.workflows/.knowledge/metadata.json" +node -e " +const fs=require('fs'); +const m=JSON.parse(fs.readFileSync('$meta','utf8')); +m.pending_removals=[{workUnit:'stale-wu',phase:null,topic:null,queued_at:new Date().toISOString(),error:'seeded',attempts:1}]; +fs.writeFileSync('$meta', JSON.stringify(m)); +" +# Status should surface the pending removal. +status_output=$(run_kb status 2>&1) +assert_eq "status shows pending removal" "true" "$(echo "$status_output" | grep -q 'Pending removals: 1' && echo true || echo false)" +# A normal remove call drains the queue (stale-wu has no chunks; just removes the entry). +run_kb remove --work-unit drop-me >/dev/null 2>&1 +meta_after=$(cat "$meta") +assert_eq "pending queue drained after remove" "true" "$(echo "$meta_after" | node -e " +let c='';process.stdin.on('data',d=>c+=d).on('end',()=>{ +const m=JSON.parse(c); +process.stdout.write(String(!m.pending_removals || m.pending_removals.length===0)); +}); +")" +teardown_project + # --- Summary --- echo "" echo "Results: $PASS passed, $FAIL failed" From d471a7fe8ac879c1ece89f1597e14e62c08c2f92 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:23:35 +0100 Subject: [PATCH 08/78] fix(knowledge): surface unexpected manifest-CLI errors, fail loud on missing path MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Two related silent-failure modes rolled into one commit: MANIFEST_JS resolution (deferred #5): when neither candidate path existed, the const silently held a non-existent path. First manifest call ENOENT'd inside a silent try/catch and bulk operations returned empty. Now throws at module load with both candidate paths — an installation problem is surfaced immediately, not disguised as 'no artifacts to index'. Error swallowing (deferred #4): discoverArtifacts, getWorkUnitMeta, and the status unindexed-artifact block caught every execFileSync failure identically. 'Work unit not found' is expected (orphans), but corrupt JSON / bad work-unit name / missing manifest file were indistinguishable and silently skipped. Added isManifestKeyNotFound() to recognise expected misses, reportUnexpectedManifestError() to write everything else to stderr with the CLI's own message. Behaviour unchanged for the expected-miss path; real breakage is now visible. Closes deferred-issues #4, #5. --- .../workflow-knowledge/scripts/knowledge.cjs | 137 +++++++++--------- src/knowledge/index.js | 61 ++++++-- 2 files changed, 120 insertions(+), 78 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 8214247b1..b158d49e4 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,38 +1,38 @@ -"use strict";var b=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var dt=b(K=>{"use strict";Object.defineProperty(K,"__esModule",{value:!0});K.SUPPORTED_LANGUAGES=K.SPLITTERS=K.STEMMERS=void 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Released state is not on top of the stack.");if(e.type===wr){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===ao){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,br=new DataView(new ArrayBuffer(0)),Nd=new Uint8Array(br.buffer);try{br.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var co=new RangeError("Insufficient data"),Ud=new kd.CachedKeyDecoder,Sr=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=br;bytes=Nd;headByte=nt;stack=new _r;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Md.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??Te.UINT32_MAX,this.maxBinLength=e?.maxBinLength??Te.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??Te.UINT32_MAX,this.maxMapLength=e?.maxMapLength??Te.UINT32_MAX,this.maxExtLength=e?.maxExtLength??Te.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Ud,this.mapKeyConverter=e?.mapKeyConverter??Pd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,oo.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,oo.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield 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e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new ue.DecodeError(`Unrecognized array type byte: ${(0,mr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new ue.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new ue.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new ue.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new ue.DecodeError(`Max length exceeded: bin length (${e}) 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positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function Yd(t){let e=wo(t);return te.create({schema:e})}function Jd(t){for(let e of vr)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function Xd(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");Jd(e);let n={};for(let r of vr)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). 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If no other process is running, delete the file manually.`);await uf(of)}}function bo(t){try{z.unlinkSync(t)}catch{}}async function lf(t,e){await So(t);try{return await e()}finally{bo(t)}}var df=["provider","model","dimensions","last_indexed","pending"];function ff(t,e){if(!t)throw new Error("writeMetadata: metadataPath is required");if(e==null||typeof e!="object")throw new Error("writeMetadata: data must be an object");let n={provider:e.provider===void 0?null:e.provider,model:e.model===void 0?null:e.model,dimensions:e.dimensions===void 0?null:e.dimensions,last_indexed:e.last_indexed===void 0?null:e.last_indexed,pending:Array.isArray(e.pending)?e.pending:[]},r=t+".tmp";z.writeFileSync(r,JSON.stringify(n,null,2)+` -`,"utf8"),z.renameSync(r,t)}function hf(t){if(!t)throw new Error("readMetadata: metadataPath is required");if(!z.existsSync(t))throw new Error(`readMetadata: metadata file not found at ${t}`);let e;try{e=z.readFileSync(t,"utf8")}catch(r){throw new Error(`readMetadata: failed to read ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`readMetadata: invalid JSON at ${t}: ${r.message}`)}return n}Io.exports={SCHEMA_FIELDS:vr,METADATA_FIELDS:df,buildSchema:wo,createStore:Yd,insertDocument:Xd,removeByIdentity:Zd,removeByFilter:_o,searchFulltext:Qd,searchVector:ef,searchHybrid:tf,saveStore:nf,loadStore:rf,acquireLock:So,releaseLock:bo,withLock:lf,writeMetadata:ff,readMetadata:hf}});var To=b((ip,Ao)=>{"use strict";var pf=/^\s*(```+|~~~+)/,xo=/^---\s*$/;function gf(t,e){if(typeof t!="string")throw new TypeError("chunk: markdown must be a string");if(!e||typeof e!="object")throw new TypeError("chunk: config must be an object");let{primary_level:n=2,fallback_level:r=3,max_lines:s=200,keep_whole_below:i=50,special_sections:o={},strip_frontmatter:c=!0,skip_empty_sections:a=!0}=e,u=t.replace(/\r\n/g,` +`,ANSWER_SESSION_LAST_MESSAGE_IS_NOT_ASSISTANT:"The last message in the session is not an assistant message. 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Released state is not on top of the stack.");if(e.type===_r){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===uo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,Ir=new DataView(new ArrayBuffer(0)),Ud=new Uint8Array(Ir.buffer);try{Ir.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var ao=new RangeError("Insufficient data"),Rd=new Pd.CachedKeyDecoder,br=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Ir;bytes=Ud;headByte=nt;stack=new Sr;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Od.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??Te.UINT32_MAX,this.maxBinLength=e?.maxBinLength??Te.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??Te.UINT32_MAX,this.maxMapLength=e?.maxMapLength??Te.UINT32_MAX,this.maxExtLength=e?.maxExtLength??Te.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Rd,this.mapKeyConverter=e?.mapKeyConverter??Nd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,co.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,co.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,wr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new ue.DecodeError(`Unrecognized type byte: ${(0,wr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===_r)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new ue.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=uo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new ue.DecodeError(`Unrecognized array type byte: ${(0,wr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new ue.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new ue.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new ue.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new ue.DecodeError(`Max length exceeded: bin length (${e}) 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positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function Jd(t){let e=_o(t);return te.create({schema:e})}function Xd(t){for(let e of Ar)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function Zd(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");Xd(e);let n={};for(let r of Ar)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). 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Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function Zo(t){let e=$.systemConfigPath(),n=Jo(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Go({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Yo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Jo(){return{knowledge:{}}}function Xo(t){if(!be.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=be.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Zo(t){let e=Ie.join(t,"config.json"),n=Ie.join(t,"store.msp"),r=Ie.join(t,"metadata.json"),s=be.existsSync(t),i=be.existsSync(e),o=be.existsSync(n),c=be.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function dn({apiKey:t,model:e,dimensions:n}){let s=await new Of({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function fn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function Qo(t){let e=$.systemConfigPath(),n=Xo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} @@ -51,12 +51,12 @@ Embedding provider: `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) `);let s;for(;s=(await ln(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return $.writeConfigFile(e,Go()),process.stdout.write(` +`);if(s==="skip")return $.writeConfigFile(e,Yo()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await ln(t,"Embedding model",$o),o=await ln(t,"Vector dimensions",String(qo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),$.writeConfigFile(e,Ho({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await ln(t,"Embedding model",qo),o=await ln(t,"Vector dimensions",String(zo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),$.writeConfigFile(e,Go({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let a=$.PROVIDER_ENV_VARS.openai;return await Qo(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function Qo(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`);let a=$.PROVIDER_ENV_VARS.openai;return await ec(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function ec(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... `);try{await dn({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. `)}catch(c){let{message:a,hint:u}=fn(c);process.stdout.write(`${a} @@ -69,7 +69,7 @@ Found an existing API key in ${s} \u2014 validating via a test embed... ${u} `),!await Fe(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await Of(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Of(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await kf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function kf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -85,7 +85,7 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await Ko(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await Ho(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... @@ -95,7 +95,7 @@ Validating via a test embed... `),!await Fe(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function ec(t){let e=Ie.resolve(process.cwd(),".workflows",".knowledge"),n=Ie.join(e,"config.json"),r=Ie.join(e,"store.msp"),s=Ie.join(e,"metadata.json"),i=Xo(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}}async function tc(t){let e=Ie.resolve(process.cwd(),".workflows",".knowledge"),n=Ie.join(e,"config.json"),r=Ie.join(e,"store.msp"),s=Ie.join(e,"metadata.json"),i=Zo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await Fe(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -103,24 +103,27 @@ Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);be.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Yo()),process.stdout.write(` config.json written -`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:zo;if(!i.storeExists||i.fullyInitialised){let u=await Rr.createStore(a);await Rr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) -`)}return(!i.metadataExists||i.fullyInitialised)&&(Rr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function tc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` +`);be.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Jo()),process.stdout.write(` config.json written +`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Vo;if(!i.storeExists||i.fullyInitialised){let u=await Lr.createStore(a);await Lr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) +`)}return(!i.metadataExists||i.fullyInitialised)&&(Lr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written +`)),{created:!0,provider:c,dimensions:a}}async function nc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function kf(t,e,n){Vo();let r=Ie.resolve(process.cwd(),".workflows");be.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=Wo(),i;try{process.stdout.write(` +`)}}async function Pf(t,e,n){Wo();let r=Ie.resolve(process.cwd(),".workflows");be.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=Ko(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await Zo(s),await ec(s)}finally{s.close()}await tc(t,n),process.stdout.write(` +`),i=await Qo(s),await tc(s)}finally{s.close()}await nc(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}nc.exports={cmdSetup:kf,requireTTY:Vo,createPrompter:Wo,ask:ln,askYesNo:Fe,askSecret:Ko,buildSystemConfigOpenAI:Ho,buildSystemConfigStub:Go,buildProjectConfigEmpty:Yo,detectSystemConfig:Jo,detectProjectInit:Xo,validateApiKey:dn,describeValidationError:fn,ensureOpenAIKey:Qo,runSystemConfigStep:Zo,runProjectInitStep:ec,runInitialIndexStep:tc,KEYWORD_ONLY_DIMENSIONS:zo,OPENAI_DEFAULT_MODEL:$o,OPENAI_DEFAULT_DIMENSIONS:qo}});var v=require("fs"),q=require("path"),E=Tr(),ac=To(),{StubProvider:Pf}=Mr(),{OpenAIProvider:Nf}=un(),Be=Ur(),uc=rc(),Cr=["research","discussion","investigation","specification"],Uf=v.existsSync(q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"))?q.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"):q.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs"),at=[1e3,2e3,4e3],Rf=5,Fr=1536,sc=!1;function lc(t){let e=[],n={},r=0;for(;r [options] +`)}rc.exports={cmdSetup:Pf,requireTTY:Wo,createPrompter:Ko,ask:ln,askYesNo:Fe,askSecret:Ho,buildSystemConfigOpenAI:Go,buildSystemConfigStub:Yo,buildProjectConfigEmpty:Jo,detectSystemConfig:Xo,detectProjectInit:Zo,validateApiKey:dn,describeValidationError:fn,ensureOpenAIKey:ec,runSystemConfigStep:Qo,runProjectInitStep:tc,runInitialIndexStep:nc,KEYWORD_ONLY_DIMENSIONS:Vo,OPENAI_DEFAULT_MODEL:qo,OPENAI_DEFAULT_DIMENSIONS:zo}});var v=require("fs"),z=require("path"),E=Dr(),uc=Do(),{StubProvider:Nf}=Or(),{OpenAIProvider:Uf}=un(),Be=Rr(),lc=sc(),Fr=["research","discussion","investigation","specification"],Rf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(v.existsSync(t))return t;if(v.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: + ${t} + ${e} +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),at=[1e3,2e3,4e3],Lf=5,Br=1536,ic=!1;function dc(t){let e=[],n={},r=0;for(;r [options] Commands: index Index a file or all pending artifacts @@ -138,59 +141,61 @@ Options: --phase Filter by phase --topic Filter by topic --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return q.resolve(process.cwd(),".workflows",".knowledge")}function re(){return q.join(ne(),"store.msp")}function X(){return q.join(ne(),"metadata.json")}function le(){return q.join(ne(),".lock")}function Lf(t){return new Promise(e=>setTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;isetTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;i$r(s,o,n,r),{maxAttempts:3,backoff:at});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await pc(n,r,Rf)}async function $r(t,e,n,r){let s=jf(e.workUnit),i=q.join(__dirname,"..","chunking",e.phase+".json");if(!v.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(v.readFileSync(i,"utf8")),c=q.resolve(t),a=v.readFileSync(c,"utf8"),u=ac.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=X(),p=le();v.existsSync(l)||v.mkdirSync(l,{recursive:!0});let g,y,h=v.existsSync(d),m=v.existsSync(f);h&&(g=await E.loadStore(d)),m&&(y=E.readMetadata(f),Array.isArray(y.pending)||(y.pending=[]));let w,S;if(y){let A=fc(y,n,r);w=A.mode,S=A.provider}else r?(w="full",S=r):(w="keyword-only",S=null);if(!g){let A=S?S.dimensions():n.dimensions||Fr;g=await E.createStore(A)}let _=null;if(w==="full"&&S&&u.length>0){let A=u.map(P=>P.content);_=await S.embedBatch(A)}let I=Date.now(),T=o.confidence||"medium",D=u.map((A,P)=>{let Me=String(P+1).padStart(3,"0"),Z={id:`${e.workUnit}-${e.phase}-${e.topic}-${Me}`,content:A.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return _&&(Z.embedding=_[P]),Z});return await E.withLock(p,async()=>{h?g=await E.loadStore(d):v.existsSync(d)&&(g=await E.loadStore(d)),await E.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let P of D)await E.insertDocument(g,P);await E.saveStore(g,d);let A=v.existsSync(f)?E.readMetadata(f):null;if(A)A.last_indexed=new Date().toISOString(),Array.isArray(A.pending)||(A.pending=[]),E.writeMetadata(f,A);else{let P={provider:S?n.provider:null,model:S?S.model():null,dimensions:S?S.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};E.writeMetadata(f,P)}}),D.length}function ct(t){let{execFileSync:e}=require("child_process");return e("node",[Uf,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}async function hc(t,e,n,r){return(await E.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function qr(){let t=[],e;try{let n=ct(["list"]);e=JSON.parse(n)}catch{return t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Cr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let u=ct(["resolve",`${r}.${s}.${o}`]).trim();u&&v.existsSync(q.resolve(u))&&t.push({file:u,workUnit:r,phase:s,topic:o})}catch{}}}}return t}async function hn(t,e,n){let r=qr(),s=ne(),i=re();v.existsSync(s)||v.mkdirSync(s,{recursive:!0});let o=null;v.existsSync(i)&&(o=await E.loadStore(i));let c=0,a=0,u=0;for(let l of r){if(o&&await hc(o,l.workUnit,l.phase,l.topic)){u++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await ut(()=>$r(l.file,d,e,n),{maxAttempts:3,backoff:at});process.stdout.write(`Indexing ${l.file}... ${f} chunks -`),c++,a+=f,v.existsSync(i)&&(o=await E.loadStore(i))}catch(d){await Ff(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. -`)}}await pc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${u} already indexed. -`)}async function Ff(t,e){let n=X(),r=ne(),s=le();v.existsSync(r)||v.mkdirSync(r,{recursive:!0}),await E.withLock(s,async()=>{let i;v.existsSync(n)?i=E.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};o>=0?i.pending[o]=c:i.pending.push(c),E.writeMetadata(n,i)})}async function Lr(t){let e=X(),n=le();v.existsSync(e)&&await E.withLock(n,async()=>{if(!v.existsSync(e))return;let r=E.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),E.writeMetadata(e,r))})}async function pc(t,e,n){let r=X();if(!v.existsSync(r))return;let s=E.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){let c=q.resolve(o.file);if(!v.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. 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Run \`knowledge rebuild\` to reindex. + Current config has no provider configured.`)}async function Ff(t,e,n,r){if(t.length===0)return pn(e,n,r);let s=t[0],i=z.resolve(s);v.existsSync(i)||(process.stderr.write(`File not found: ${i} +`),process.exit(1));let o=$r(s),c=await ut(()=>qr(s,o,n,r),{maxAttempts:3,backoff:at});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await gc(n,r,Lf)}async function qr(t,e,n,r){let s=Cf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!v.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(v.readFileSync(i,"utf8")),c=z.resolve(t),a=v.readFileSync(c,"utf8"),u=uc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. 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Added to pending queue. +`)}}await gc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${u} already indexed. +`)}async function $f(t,e){let n=X(),r=ne(),s=le();v.existsSync(r)||v.mkdirSync(r,{recursive:!0}),await E.withLock(s,async()=>{let i;v.existsSync(n)?i=E.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};o>=0?i.pending[o]=c:i.pending.push(c),E.writeMetadata(n,i)})}async function jr(t){let e=X(),n=le();v.existsSync(e)&&await E.withLock(n,async()=>{if(!v.existsSync(e))return;let r=E.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),E.writeMetadata(e,r))})}async function gc(t,e,n){let r=X();if(!v.existsSync(r))return;let s=E.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){let c=z.resolve(o.file);if(!v.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. 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Store: provider=${r}, model=${s}, dimensions=${i} - Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Wf(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N] + Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Hf(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N] `),process.exit(1));let s=t,i=e.limit||10,o=re(),c=X();if(!v.existsSync(o)){process.stdout.write(`[0 results] -`);return}let a=await E.loadStore(o),u="keyword-only",l=null,d=null;v.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=E.readMetadata(c),p=Vf(f,n,r);u=p.mode,l=p.provider,u==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":u==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let _=e.phase.split(",").map(I=>I.trim());g.phase=_.length===1?{eq:_[0]}:{in:_}}if(e.workType){let _=e.workType.split(",").map(I=>I.trim());g.work_type=_.length===1?{eq:_[0]}:{in:_}}if(e.topic){let _=e.topic.split(",").map(I=>I.trim());g.topic=_.length===1?{eq:_[0]}:{in:_}}let y=n.similarity_threshold||.8,h=Object.keys(g).length>0?g:void 0,m=new Map;for(let _ of s){let I;if(u==="full"&&l){let T=await ut(()=>l.embed(_),{maxAttempts:3,backoff:at});I=await E.searchHybrid(a,{term:_,vector:T,where:h,limit:i*2,similarity:y})}else I=await E.searchFulltext(a,{term:_,where:h,limit:i*2});for(let T of I){let D=m.get(T.id);(!D||T.score>D.score)&&m.set(T.id,T)}}let w=zf(Array.from(m.values()),e.workUnit);w.length>i&&(w=w.slice(0,i));let S=[];d&&S.push(d),S.push(`[${w.length} results]`);for(let _ of w){S.push("");let I=qf(_.timestamp);S.push(`[${_.phase} | ${_.work_unit}/${_.topic} | ${_.confidence} | ${I}]`),S.push(_.content),S.push(`Source: ${_.source_file}`)}process.stdout.write(S.join(` +`);return}let a=await E.loadStore(o),u="keyword-only",l=null,d=null;v.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=E.readMetadata(c),p=Kf(f,n,r);u=p.mode,l=p.provider,u==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":u==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let _=e.phase.split(",").map(I=>I.trim());g.phase=_.length===1?{eq:_[0]}:{in:_}}if(e.workType){let _=e.workType.split(",").map(I=>I.trim());g.work_type=_.length===1?{eq:_[0]}:{in:_}}if(e.topic){let _=e.topic.split(",").map(I=>I.trim());g.topic=_.length===1?{eq:_[0]}:{in:_}}let y=n.similarity_threshold||.8,h=Object.keys(g).length>0?g:void 0,m=new Map;for(let _ of s){let I;if(u==="full"&&l){let T=await ut(()=>l.embed(_),{maxAttempts:3,backoff:at});I=await E.searchHybrid(a,{term:_,vector:T,where:h,limit:i*2,similarity:y})}else I=await E.searchFulltext(a,{term:_,where:h,limit:i*2});for(let T of I){let D=m.get(T.id);(!D||T.score>D.score)&&m.set(T.id,T)}}let w=Wf(Array.from(m.values()),e.workUnit);w.length>i&&(w=w.slice(0,i));let S=[];d&&S.push(d),S.push(`[${w.length} results]`);for(let _ of w){S.push("");let I=Vf(_.timestamp);S.push(`[${_.phase} | ${_.work_unit}/${_.topic} | ${_.confidence} | ${I}]`),S.push(_.content),S.push(`Source: ${_.source_file}`)}process.stdout.write(S.join(` `)+` -`)}async function Kf(){let t=ne(),e=q.join(t,"config.json"),n=re();if(!v.existsSync(t)){process.stdout.write(`not-ready +`)}async function Gf(){let t=ne(),e=z.join(t,"config.json"),n=re();if(!v.existsSync(t)){process.stdout.write(`not-ready `);return}if(!v.existsSync(e)){process.stdout.write(`not-ready `);return}if(!v.existsSync(n)){process.stdout.write(`not-ready `);return}try{await E.loadStore(n)}catch{process.stdout.write(`not-ready `);return}process.stdout.write(`ready -`)}async function Hf(){let t=ne(),e=re(),n=X(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!v.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` +`)}async function Yf(){let t=ne(),e=re(),n=X(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!v.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await E.loadStore(e),i=await E.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,a[h.work_type]=(a[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,m]of Object.entries(o))r.push(` ${h}: ${m}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,m]of Object.entries(c))r.push(` ${h}: ${m}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[h,m]of Object.entries(a))r.push(` ${h}: ${m}`)}r.push("");let l=(v.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),v.existsSync(n)){let h=E.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let w of h.pending)r.push(` ${w.file} \u2014 ${w.error} (${w.failed_at})`)}if(Array.isArray(h.pending_removals)&&h.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${h.pending_removals.length}`);for(let w of h.pending_removals)r.push(` ${De(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${jr})`)}let m;try{m=Be.loadConfig()}catch{m=null}if(m){let w=Be.resolveProvider(m);h.provider&&w&&(h.provider!==m.provider||h.model!==w.model()||h.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(h.provider===null||h.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),v.existsSync(q.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=qr(),m=[];for(let w of h)await hc(s,w.workUnit,w.phase,w.topic)||m.push(w.file);if(m.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${m.length}`);for(let w of m)r.push(` ${w}`)}}catch{}let p=[];for(let h of Object.keys(o)){let m=wc(h);m&&m.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${h}`)}let g=i.filter(h=>h.phase==="specification"),y=new Set(g.map(h=>`${h.work_unit}.specification.${h.topic}`));for(let h of y)try{ct(["get",h,"status"]).trim()==="superseded"&&p.push(`Superseded spec still indexed: ${h}`)}catch{}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let h of p)r.push(` ${h}`)}process.stdout.write(r.join(` +`);return}let s=await E.loadStore(e),i=await E.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,a[h.work_type]=(a[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,m]of Object.entries(o))r.push(` ${h}: ${m}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,m]of Object.entries(c))r.push(` ${h}: ${m}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[h,m]of Object.entries(a))r.push(` ${h}: ${m}`)}r.push("");let l=(v.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),v.existsSync(n)){let h=E.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let w of h.pending)r.push(` ${w.file} \u2014 ${w.error} (${w.failed_at})`)}if(Array.isArray(h.pending_removals)&&h.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${h.pending_removals.length}`);for(let w of h.pending_removals)r.push(` ${De(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${Cr})`)}let m;try{m=Be.loadConfig()}catch{m=null}if(m){let w=Be.resolveProvider(m);h.provider&&w&&(h.provider!==m.provider||h.model!==w.model()||h.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(h.provider===null||h.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),v.existsSync(z.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=zr(),m=[];for(let w of h)await pc(s,w.workUnit,w.phase,w.topic)||m.push(w.file);if(m.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${m.length}`);for(let w of m)r.push(` ${w}`)}}catch(h){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${h.message} +`)}let p=[];for(let h of Object.keys(o)){let m=_c(h);m&&m.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${h}`)}let g=i.filter(h=>h.phase==="specification"),y=new Set(g.map(h=>`${h.work_unit}.specification.${h.topic}`));for(let h of y)try{ct(["get",h,"status"]).trim()==="superseded"&&p.push(`Superseded spec still indexed: ${h}`)}catch{}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let h of p)r.push(` ${h}`)}process.stdout.write(r.join(` `)+` -`)}async function Gf(t,e,n,r){let s=re(),i=X(),o=le();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function Jf(t,e,n,r){let s=re(),i=X(),o=le();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. -Type 'rebuild' to confirm: `),await Yf()!=="rebuild"&&(process.stderr.write(`Aborted. -`),process.exit(1)),qr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +Type 'rebuild' to confirm: `),await Xf()!=="rebuild"&&(process.stderr.write(`Aborted. +`),process.exit(1)),zr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1)),await E.withLock(o,async()=>{v.existsSync(s)&&v.unlinkSync(s),v.existsSync(i)&&v.unlinkSync(i);let u=r?r.dimensions():n&&n.dimensions||Fr,l=await E.createStore(u);await E.saveStore(l,s),E.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. -`),await hn(e,n,r)}function Yf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Jf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`),process.exit(1)),await E.withLock(o,async()=>{v.existsSync(s)&&v.unlinkSync(s),v.existsSync(i)&&v.unlinkSync(i);let u=r?r.dimensions():n&&n.dimensions||Br,l=await E.createStore(u);await E.saveStore(l,s),E.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`),await pn(e,n,r)}function Xf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Zf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1)),await yc();let n=re();if(!v.existsSync(n)){let s=cc(e);process.stdout.write(`Removed 0 chunks for ${s} -`);return}let r=cc(e);try{let s=await mc(e);process.stdout.write(`Removed ${s} chunks for ${r} -`)}catch(s){await gc(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. -`),process.exit(1)}}function cc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function wc(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch{}return{status:e,completed_at:n}}catch{return null}}async function Xf(t,e,n){await yc();let r=re(),s=le(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`),process.exit(1)),await mc();let n=re();if(!v.existsSync(n)){let s=ac(e);process.stdout.write(`Removed 0 chunks for ${s} +`);return}let r=ac(e);try{let s=await wc(e);process.stdout.write(`Removed ${s} chunks for ${r} +`)}catch(s){await yc(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. +`),process.exit(1)}}function ac(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function _c(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){hn(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return hn(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Qf(t,e,n){await mc();let r=re(),s=le(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. 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diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 4dfd52c7c..8eb380ed6 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -24,9 +24,20 @@ const INDEXED_PHASES = ['research', 'discussion', 'investigation', 'specificatio // Resolve manifest CLI path. In the bundled form, __dirname is // skills/workflow-knowledge/scripts/. In source, __dirname is // src/knowledge/. Both need to resolve to skills/workflow-manifest/scripts/manifest.cjs. -const MANIFEST_JS = fs.existsSync(path.join(__dirname, '..', '..', 'skills', 'workflow-manifest', 'scripts', 'manifest.cjs')) - ? path.join(__dirname, '..', '..', 'skills', 'workflow-manifest', 'scripts', 'manifest.cjs') - : path.join(__dirname, '..', '..', 'workflow-manifest', 'scripts', 'manifest.cjs'); +const MANIFEST_JS = (() => { + const srcCandidate = path.join(__dirname, '..', '..', 'skills', 'workflow-manifest', 'scripts', 'manifest.cjs'); + const bundledCandidate = path.join(__dirname, '..', '..', 'workflow-manifest', 'scripts', 'manifest.cjs'); + if (fs.existsSync(srcCandidate)) return srcCandidate; + if (fs.existsSync(bundledCandidate)) return bundledCandidate; + // Fail loud at load time — a missing manifest CLI would otherwise turn + // every manifest-dependent command into a silent no-op (deferred-issue #5). + throw new Error( + 'Could not locate manifest.cjs. Tried:\n' + + ` ${srcCandidate}\n` + + ` ${bundledCandidate}\n` + + 'This is an installation problem — the knowledge CLI cannot work without the manifest CLI.' + ); +})(); const DEFAULT_RETRY_BACKOFF = [1000, 2000, 4000]; const PENDING_CATCHUP_LIMIT = 5; @@ -522,6 +533,23 @@ function runManifest(args) { }); } +/** + * Distinguish expected "not found" errors from broken-manifest / corrupt-JSON + * / bad-path errors. Knowledge-base helpers swallow the former (lookups are + * best-effort); the latter must be surfaced or bulk operations become silent + * no-ops (deferred-issue #4). + */ +function isManifestKeyNotFound(err) { + const s = err && err.stderr ? String(err.stderr) : ''; + return /not found|does not exist/i.test(s); +} + +function reportUnexpectedManifestError(context, err) { + if (isManifestKeyNotFound(err)) return; + const msg = err && err.stderr ? String(err.stderr).trim() : err.message; + process.stderr.write(`Warning: manifest CLI failed in ${context}: ${msg}\n`); +} + /** * Check if chunks exist for the given identity triple. */ @@ -549,7 +577,8 @@ function discoverArtifacts() { try { const raw = runManifest(['list']); workUnits = JSON.parse(raw); - } catch (_) { + } catch (err) { + reportUnexpectedManifestError('discoverArtifacts:list', err); return items; } @@ -574,8 +603,11 @@ function discoverArtifacts() { if (filePath && fs.existsSync(path.resolve(filePath))) { items.push({ file: filePath, workUnit: wuName, phase, topic: topicName }); } - } catch (_) { - // Skip unresolvable items. + } catch (err) { + reportUnexpectedManifestError( + `discoverArtifacts:resolve(${wuName}.${phase}.${topicName})`, + err + ); } } } @@ -1297,8 +1329,9 @@ async function cmdStatus() { out.push(` ${f}`); } } - } catch (_) { - // Discovery may fail if no manifest — skip. + } catch (err) { + // Discovery may fail if no manifest — surface so user can tell. + process.stderr.write(`Warning: unindexed-artifact discovery failed: ${err.message}\n`); } // 9. Manifest-knowledge consistency. @@ -1503,12 +1536,16 @@ function getWorkUnitMeta(workUnit) { if (completedAt === '' || completedAt === 'undefined' || completedAt === 'null') { completedAt = null; } - } catch (_) { - // completed_at may not exist. + } catch (err) { + // completed_at may not exist — expected. But surface unexpected errors. + reportUnexpectedManifestError(`getWorkUnitMeta:get(${workUnit}.completed_at)`, err); } return { status, completed_at: completedAt }; - } catch (_) { - // Manifest lookup failed (e.g., orphaned work unit). + } catch (err) { + // Work unit missing or manifest broken. "Not found" is expected for + // orphaned work units referenced by stale chunks; anything else is a + // real problem the user should see. + reportUnexpectedManifestError(`getWorkUnitMeta:get(${workUnit}.status)`, err); return null; } } From 5456004bdbb67160ebc738a03ecac88cb29ad954 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:27:11 +0100 Subject: [PATCH 09/78] fix(knowledge): rebuild rolls back on bulk-index failure MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit cmdRebuild previously deleted store.msp + metadata.json before running bulk index. If bulk threw (network outage, OpenAI down, Ctrl-C), the user was left with no store and no metadata — a transient failure turned into total data loss. Rename to .bak before the wipe, run bulk index, delete .bak on success, restore .bak on failure. Leftover .bak from prior aborts is cleaned at rebuild entry. If rollback itself fails, stderr prints both errors and the .bak paths so the user can recover manually. Closes deferred-issues #3. --- .../workflow-knowledge/scripts/knowledge.cjs | 69 ++++++++++--------- src/knowledge/index.js | 52 ++++++++++++-- tests/scripts/test-knowledge-cli.sh | 19 +++++ 3 files changed, 103 insertions(+), 37 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index b158d49e4..8aa3e5baa 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var b=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var dt=b(K=>{"use strict";Object.defineProperty(K,"__esModule",{value:!0});K.SUPPORTED_LANGUAGES=K.SPLITTERS=K.STEMMERS=void 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t{extensionCodec;context;useBigInt64;maxDepth;initialBufferSize;sortKeys;forceFloat32;ignoreUndefined;forceIntegerToFloat;pos;view;bytes;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Id.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.maxDepth=e?.maxDepth??ee.DEFAULT_MAX_DEPTH,this.initialBufferSize=e?.initialBufferSize??ee.DEFAULT_INITIAL_BUFFER_SIZE,this.sortKeys=e?.sortKeys??!1,this.forceFloat32=e?.forceFloat32??!1,this.ignoreUndefined=e?.ignoreUndefined??!1,this.forceIntegerToFloat=e?.forceIntegerToFloat??!1,this.pos=0,this.view=new DataView(new ArrayBuffer(this.initialBufferSize)),this.bytes=new Uint8Array(this.view.buffer)}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,maxDepth:this.maxDepth,initialBufferSize:this.initialBufferSize,sortKeys:this.sortKeys,forceFloat32:this.forceFloat32,ignoreUndefined:this.ignoreUndefined,forceIntegerToFloat:this.forceIntegerToFloat})}reinitializeState(){this.pos=0}encodeSharedRef(e){if(this.entered)return this.clone().encodeSharedRef(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.subarray(0,this.pos)}finally{this.entered=!1}}encode(e){if(this.entered)return this.clone().encode(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.slice(0,this.pos)}finally{this.entered=!1}}doEncode(e,n){if(n>this.maxDepth)throw new Error(`Too deep objects in depth ${n}`);e==null?this.encodeNil():typeof e=="boolean"?this.encodeBoolean(e):typeof e=="number"?this.forceIntegerToFloat?this.encodeNumberAsFloat(e):this.encodeNumber(e):typeof e=="string"?this.encodeString(e):this.useBigInt64&&typeof e=="bigint"?this.encodeBigInt64(e):this.encodeObject(e,n)}ensureBufferSizeToWrite(e){let n=this.pos+e;this.view.byteLength=0?e<128?this.writeU8(e):e<256?(this.writeU8(204),this.writeU8(e)):e<65536?(this.writeU8(205),this.writeU16(e)):e<4294967296?(this.writeU8(206),this.writeU32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(207),this.writeU64(e)):e>=-32?this.writeU8(224|e+32):e>=-128?(this.writeU8(208),this.writeI8(e)):e>=-32768?(this.writeU8(209),this.writeI16(e)):e>=-2147483648?(this.writeU8(210),this.writeI32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(211),this.writeI64(e)):this.encodeNumberAsFloat(e)}encodeNumberAsFloat(e){this.forceFloat32?(this.writeU8(202),this.writeF32(e)):(this.writeU8(203),this.writeF64(e))}encodeBigInt64(e){e>=BigInt(0)?(this.writeU8(207),this.writeBigUint64(e)):(this.writeU8(211),this.writeBigInt64(e))}writeStringHeader(e){if(e<32)this.writeU8(160+e);else if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,no.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,no.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,xd.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,ro.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,ro.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};ee.Encoder=hr});var so=b(gr=>{"use strict";Object.defineProperty(gr,"__esModule",{value:!0});gr.encode=vd;var Ed=pr();function vd(t,e){return new Ed.Encoder(e).encodeSharedRef(t)}});var io=b(yr=>{"use strict";Object.defineProperty(yr,"__esModule",{value:!0});yr.prettyByte=Ad;function Ad(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var oo=b(sn=>{"use strict";Object.defineProperty(sn,"__esModule",{value:!0});sn.CachedKeyDecoder=void 0;var Td=Jt(),Dd=16,Md=16,mr=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=Dd,n=Md){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Td.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};sn.CachedKeyDecoder=mr});var cn=b(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.Decoder=void 0;var wr=io(),Od=rn(),Te=en(),kd=Jt(),co=fr(),Pd=oo(),ue=Qt(),_r="array",rt="map_key",uo="map_value",Nd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new ue.DecodeError("The type of key must be string or number but "+typeof t)},Sr=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=_r,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===_r){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===uo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,Ir=new DataView(new ArrayBuffer(0)),Ud=new Uint8Array(Ir.buffer);try{Ir.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var ao=new RangeError("Insufficient data"),Rd=new Pd.CachedKeyDecoder,br=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Ir;bytes=Ud;headByte=nt;stack=new Sr;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Od.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??Te.UINT32_MAX,this.maxBinLength=e?.maxBinLength??Te.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??Te.UINT32_MAX,this.maxMapLength=e?.maxMapLength??Te.UINT32_MAX,this.maxExtLength=e?.maxExtLength??Te.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Rd,this.mapKeyConverter=e?.mapKeyConverter??Nd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,co.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,co.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,wr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new ue.DecodeError(`Unrecognized type byte: ${(0,wr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===_r)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new ue.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=uo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new ue.DecodeError(`Unrecognized array type byte: ${(0,wr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new ue.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new ue.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new ue.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new ue.DecodeError(`Max length exceeded: bin length (${e}) 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t{extensionCodec;context;useBigInt64;maxDepth;initialBufferSize;sortKeys;forceFloat32;ignoreUndefined;forceIntegerToFloat;pos;view;bytes;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Id.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.maxDepth=e?.maxDepth??ee.DEFAULT_MAX_DEPTH,this.initialBufferSize=e?.initialBufferSize??ee.DEFAULT_INITIAL_BUFFER_SIZE,this.sortKeys=e?.sortKeys??!1,this.forceFloat32=e?.forceFloat32??!1,this.ignoreUndefined=e?.ignoreUndefined??!1,this.forceIntegerToFloat=e?.forceIntegerToFloat??!1,this.pos=0,this.view=new DataView(new ArrayBuffer(this.initialBufferSize)),this.bytes=new Uint8Array(this.view.buffer)}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,maxDepth:this.maxDepth,initialBufferSize:this.initialBufferSize,sortKeys:this.sortKeys,forceFloat32:this.forceFloat32,ignoreUndefined:this.ignoreUndefined,forceIntegerToFloat:this.forceIntegerToFloat})}reinitializeState(){this.pos=0}encodeSharedRef(e){if(this.entered)return this.clone().encodeSharedRef(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.subarray(0,this.pos)}finally{this.entered=!1}}encode(e){if(this.entered)return this.clone().encode(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.slice(0,this.pos)}finally{this.entered=!1}}doEncode(e,n){if(n>this.maxDepth)throw new Error(`Too deep objects in depth ${n}`);e==null?this.encodeNil():typeof e=="boolean"?this.encodeBoolean(e):typeof e=="number"?this.forceIntegerToFloat?this.encodeNumberAsFloat(e):this.encodeNumber(e):typeof e=="string"?this.encodeString(e):this.useBigInt64&&typeof e=="bigint"?this.encodeBigInt64(e):this.encodeObject(e,n)}ensureBufferSizeToWrite(e){let n=this.pos+e;this.view.byteLength=0?e<128?this.writeU8(e):e<256?(this.writeU8(204),this.writeU8(e)):e<65536?(this.writeU8(205),this.writeU16(e)):e<4294967296?(this.writeU8(206),this.writeU32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(207),this.writeU64(e)):e>=-32?this.writeU8(224|e+32):e>=-128?(this.writeU8(208),this.writeI8(e)):e>=-32768?(this.writeU8(209),this.writeI16(e)):e>=-2147483648?(this.writeU8(210),this.writeI32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(211),this.writeI64(e)):this.encodeNumberAsFloat(e)}encodeNumberAsFloat(e){this.forceFloat32?(this.writeU8(202),this.writeF32(e)):(this.writeU8(203),this.writeF64(e))}encodeBigInt64(e){e>=BigInt(0)?(this.writeU8(207),this.writeBigUint64(e)):(this.writeU8(211),this.writeBigInt64(e))}writeStringHeader(e){if(e<32)this.writeU8(160+e);else if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,no.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,no.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,xd.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,ro.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,ro.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};ee.Encoder=hr});var so=b(gr=>{"use strict";Object.defineProperty(gr,"__esModule",{value:!0});gr.encode=vd;var Ed=pr();function vd(t,e){return new Ed.Encoder(e).encodeSharedRef(t)}});var io=b(yr=>{"use strict";Object.defineProperty(yr,"__esModule",{value:!0});yr.prettyByte=Ad;function Ad(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var oo=b(sn=>{"use strict";Object.defineProperty(sn,"__esModule",{value:!0});sn.CachedKeyDecoder=void 0;var Td=Jt(),Dd=16,Md=16,mr=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=Dd,n=Md){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Td.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};sn.CachedKeyDecoder=mr});var cn=b(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.Decoder=void 0;var wr=io(),kd=rn(),Te=en(),Od=Jt(),co=fr(),Pd=oo(),ue=Qt(),_r="array",rt="map_key",uo="map_value",Nd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new ue.DecodeError("The type of key must be string or number but "+typeof t)},Sr=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=_r,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===_r){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===uo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,Ir=new DataView(new ArrayBuffer(0)),Ud=new Uint8Array(Ir.buffer);try{Ir.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var ao=new RangeError("Insufficient data"),Rd=new Pd.CachedKeyDecoder,br=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Ir;bytes=Ud;headByte=nt;stack=new Sr;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??kd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??Te.UINT32_MAX,this.maxBinLength=e?.maxBinLength??Te.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??Te.UINT32_MAX,this.maxMapLength=e?.maxMapLength??Te.UINT32_MAX,this.maxExtLength=e?.maxExtLength??Te.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Rd,this.mapKeyConverter=e?.mapKeyConverter??Nd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,co.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,co.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,wr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new ue.DecodeError(`Unrecognized type byte: ${(0,wr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===_r)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new ue.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=uo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new ue.DecodeError(`Unrecognized array type byte: ${(0,wr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new ue.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new ue.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new ue.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new ue.DecodeError(`Max length exceeded: bin length (${e}) 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Available providers: ${Pr.join(", ")}`);return t._api_key&&e==="openai"?new Ef({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function Df(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` -`,"utf8"),B.renameSync(r,t)}$o.exports={DEFAULTS:Ro,AVAILABLE_PROVIDERS:Pr,PROVIDER_ENV_VARS:Lo,systemConfigPath:jo,projectConfigPath:Co,credentialsPath:Fo,readConfigFile:Nr,loadConfig:Af,loadCredentials:Ur,writeCredentials:vf,resolveApiKey:Bo,resolveProvider:Tf,writeConfigFile:Df}});var sc=b((dp,rc)=>{"use strict";var be=require("fs"),Ie=require("path"),Mf=require("readline"),$=Rr(),Lr=Dr(),{OpenAIProvider:Of}=un(),qo="text-embedding-3-small",zo=1536,Vo=1536;function Wo(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`,"utf8"),B.renameSync(r,t)}$o.exports={DEFAULTS:Ro,AVAILABLE_PROVIDERS:Pr,PROVIDER_ENV_VARS:Lo,systemConfigPath:jo,projectConfigPath:Co,credentialsPath:Fo,readConfigFile:Nr,loadConfig:Af,loadCredentials:Ur,writeCredentials:vf,resolveApiKey:Bo,resolveProvider:Tf,writeConfigFile:Df}});var sc=b((dp,rc)=>{"use strict";var be=require("fs"),Ie=require("path"),Mf=require("readline"),$=Rr(),Lr=Dr(),{OpenAIProvider:kf}=un(),qo="text-embedding-3-small",zo=1536,Vo=1536;function Wo(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function Ko(){let t=Mf.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. `),t.close(),process.exit(130)}),t}function ln(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Ho(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` `||l==="\r")return c(),s.write(` `),n(o.trim());if(l===""){c(),s.write(` `),process.exit(130);return}if(l==="")return c(),s.write(` -`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Go({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Yo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Jo(){return{knowledge:{}}}function Xo(t){if(!be.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=be.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Zo(t){let e=Ie.join(t,"config.json"),n=Ie.join(t,"store.msp"),r=Ie.join(t,"metadata.json"),s=be.existsSync(t),i=be.existsSync(e),o=be.existsSync(n),c=be.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function dn({apiKey:t,model:e,dimensions:n}){let s=await new Of({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function fn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function Qo(t){let e=$.systemConfigPath(),n=Xo(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Go({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Yo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Jo(){return{knowledge:{}}}function Xo(t){if(!be.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=be.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Zo(t){let e=Ie.join(t,"config.json"),n=Ie.join(t,"store.msp"),r=Ie.join(t,"metadata.json"),s=be.existsSync(t),i=be.existsSync(e),o=be.existsSync(n),c=be.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function dn({apiKey:t,model:e,dimensions:n}){let s=await new kf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function fn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function Qo(t){let e=$.systemConfigPath(),n=Xo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} @@ -69,7 +69,7 @@ Found an existing API key in ${s} \u2014 validating via a test embed... ${u} `),!await Fe(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await kf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function kf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await Of(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Of(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -120,7 +120,7 @@ Knowledge base setup Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}rc.exports={cmdSetup:Pf,requireTTY:Wo,createPrompter:Ko,ask:ln,askYesNo:Fe,askSecret:Ho,buildSystemConfigOpenAI:Go,buildSystemConfigStub:Yo,buildProjectConfigEmpty:Jo,detectSystemConfig:Xo,detectProjectInit:Zo,validateApiKey:dn,describeValidationError:fn,ensureOpenAIKey:ec,runSystemConfigStep:Qo,runProjectInitStep:tc,runInitialIndexStep:nc,KEYWORD_ONLY_DIMENSIONS:Vo,OPENAI_DEFAULT_MODEL:qo,OPENAI_DEFAULT_DIMENSIONS:zo}});var v=require("fs"),z=require("path"),E=Dr(),uc=Do(),{StubProvider:Nf}=Or(),{OpenAIProvider:Uf}=un(),Be=Rr(),lc=sc(),Fr=["research","discussion","investigation","specification"],Rf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(v.existsSync(t))return t;if(v.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}rc.exports={cmdSetup:Pf,requireTTY:Wo,createPrompter:Ko,ask:ln,askYesNo:Fe,askSecret:Ho,buildSystemConfigOpenAI:Go,buildSystemConfigStub:Yo,buildProjectConfigEmpty:Jo,detectSystemConfig:Xo,detectProjectInit:Zo,validateApiKey:dn,describeValidationError:fn,ensureOpenAIKey:ec,runSystemConfigStep:Qo,runProjectInitStep:tc,runInitialIndexStep:nc,KEYWORD_ONLY_DIMENSIONS:Vo,OPENAI_DEFAULT_MODEL:qo,OPENAI_DEFAULT_DIMENSIONS:zo}});var I=require("fs"),z=require("path"),v=Dr(),uc=Do(),{StubProvider:Nf}=kr(),{OpenAIProvider:Uf}=un(),Be=Rr(),lc=sc(),Fr=["research","discussion","investigation","specification"],Rf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(I.existsSync(t))return t;if(I.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),at=[1e3,2e3,4e3],Lf=5,Br=1536,ic=!1;function dc(t){let e=[],n={},r=0;for(;r [options] @@ -145,35 +145,35 @@ Options: Expected path matching: .workflows/{work_unit}/{phase}/...`);let r=n[1],s=n[2],i=n[3];if(r==="."||r===".."||r.startsWith("."))throw new Error(`Invalid work unit name: "${r}"`);if(!Fr.includes(s))throw new Error(`File is in phase "${s}" which is not indexed.`);let o;if(s==="specification"){let c=/^([^/]+)\/specification\.md$/.exec(i);if(!c)throw new Error(`Unexpected specification path structure: ${i} Expected: .workflows/{work_unit}/specification/{topic}/specification.md`);o=c[1]}else if(s==="discussion"||s==="investigation"){let c=/^([^/]+)\.md$/.exec(i);if(!c)throw new Error(`Unexpected ${s} path structure: ${i} Expected: .workflows/{work_unit}/${s}/{topic}.md`);o=c[1]}else if(s==="research"){let c=/^([^/]+)\.md$/.exec(i);if(!c)throw new Error(`Unexpected research path structure: ${i} -Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o===".."||o.startsWith("."))throw new Error(`Invalid topic name: "${o}"`);return{workUnit:r,phase:s,topic:o}}function Cf(t){let e=z.resolve(process.cwd(),".workflows",t,"manifest.json");if(!v.existsSync(e))throw new Error(`Work unit manifest not found: ${e}`);let n=JSON.parse(v.readFileSync(e,"utf8"));if(!n.work_type)throw new Error(`Work unit manifest missing work_type field: ${e}`);return n.work_type}function hc(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n&&!ic&&(ic=!0,process.stderr.write("Note: store is keyword-only but an embedding provider is now configured. Run `knowledge rebuild` to switch to full hybrid search.\n")),{mode:"keyword-only",provider:null};if(n){let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. +Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o===".."||o.startsWith("."))throw new Error(`Invalid topic name: "${o}"`);return{workUnit:r,phase:s,topic:o}}function Cf(t){let e=z.resolve(process.cwd(),".workflows",t,"manifest.json");if(!I.existsSync(e))throw new Error(`Work unit manifest not found: ${e}`);let n=JSON.parse(I.readFileSync(e,"utf8"));if(!n.work_type)throw new Error(`Work unit manifest missing work_type field: ${e}`);return n.work_type}function hc(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n&&!ic&&(ic=!0,process.stderr.write("Note: store is keyword-only but an embedding provider is now configured. Run `knowledge rebuild` to switch to full hybrid search.\n")),{mode:"keyword-only",provider:null};if(n){let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} - Current config has no provider configured.`)}async function Ff(t,e,n,r){if(t.length===0)return pn(e,n,r);let s=t[0],i=z.resolve(s);v.existsSync(i)||(process.stderr.write(`File not found: ${i} + Current config has no provider configured.`)}async function Ff(t,e,n,r){if(t.length===0)return pn(e,n,r);let s=t[0],i=z.resolve(s);I.existsSync(i)||(process.stderr.write(`File not found: ${i} `),process.exit(1));let o=$r(s),c=await ut(()=>qr(s,o,n,r),{maxAttempts:3,backoff:at});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await gc(n,r,Lf)}async function qr(t,e,n,r){let s=Cf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!v.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(v.readFileSync(i,"utf8")),c=z.resolve(t),a=v.readFileSync(c,"utf8"),u=uc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=X(),p=le();v.existsSync(l)||v.mkdirSync(l,{recursive:!0});let g,y,h=v.existsSync(d),m=v.existsSync(f);h&&(g=await E.loadStore(d)),m&&(y=E.readMetadata(f),Array.isArray(y.pending)||(y.pending=[]));let w,S;if(y){let A=hc(y,n,r);w=A.mode,S=A.provider}else r?(w="full",S=r):(w="keyword-only",S=null);if(!g){let A=S?S.dimensions():n.dimensions||Br;g=await E.createStore(A)}let _=null;if(w==="full"&&S&&u.length>0){let A=u.map(P=>P.content);_=await S.embedBatch(A)}let I=Date.now(),T=o.confidence||"medium",D=u.map((A,P)=>{let Me=String(P+1).padStart(3,"0"),Z={id:`${e.workUnit}-${e.phase}-${e.topic}-${Me}`,content:A.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return _&&(Z.embedding=_[P]),Z});return await E.withLock(p,async()=>{h?g=await E.loadStore(d):v.existsSync(d)&&(g=await E.loadStore(d)),await E.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let P of D)await E.insertDocument(g,P);await E.saveStore(g,d);let A=v.existsSync(f)?E.readMetadata(f):null;if(A)A.last_indexed=new Date().toISOString(),Array.isArray(A.pending)||(A.pending=[]),E.writeMetadata(f,A);else{let P={provider:S?n.provider:null,model:S?S.model():null,dimensions:S?S.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};E.writeMetadata(f,P)}}),D.length}function ct(t){let{execFileSync:e}=require("child_process");return e("node",[Rf,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function Bf(t){let e=t&&t.stderr?String(t.stderr):"";return/not found|does not exist/i.test(e)}function hn(t,e){if(Bf(e))return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} -`)}async function pc(t,e,n,r){return(await E.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function zr(){let t=[],e;try{let n=ct(["list"]);e=JSON.parse(n)}catch(n){return hn("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Fr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let u=ct(["resolve",`${r}.${s}.${o}`]).trim();u&&v.existsSync(z.resolve(u))&&t.push({file:u,workUnit:r,phase:s,topic:o})}catch(a){hn(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function pn(t,e,n){let r=zr(),s=ne(),i=re();v.existsSync(s)||v.mkdirSync(s,{recursive:!0});let o=null;v.existsSync(i)&&(o=await E.loadStore(i));let c=0,a=0,u=0;for(let l of r){if(o&&await pc(o,l.workUnit,l.phase,l.topic)){u++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await ut(()=>qr(l.file,d,e,n),{maxAttempts:3,backoff:at});process.stdout.write(`Indexing ${l.file}... ${f} chunks -`),c++,a+=f,v.existsSync(i)&&(o=await E.loadStore(i))}catch(d){await $f(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. +`),await gc(n,r,Lf)}async function qr(t,e,n,r){let s=Cf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!I.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(I.readFileSync(i,"utf8")),c=z.resolve(t),a=I.readFileSync(c,"utf8"),u=uc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. 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Removing from queue. +`),await jr(o.file);continue}let a;try{a=$r(o.file)}catch{await jr(o.file);continue}try{await ut(()=>qr(o.file,a,t,e),{maxAttempts:3,backoff:at}),await jr(o.file)}catch{}}}var Cr=10;function De(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function yc(t,e){let n=X(),r=ne(),s=le();I.existsSync(r)||I.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;I.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=De(t),c=i.pending_removals.findIndex(u=>De(u)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let u=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(u.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});v.writeMetadata(n,i)})}async function cc(t){let e=X(),n=le();I.existsSync(e)&&await v.withLock(n,async()=>{if(!I.existsSync(e))return;let r=v.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=De(t);r.pending_removals=r.pending_removals.filter(i=>De(i)!==s),v.writeMetadata(e,r)})}async function mc(){let t=X();if(!I.existsSync(t))return;let e=v.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=Cr){process.stderr.write(`Pending removal for ${De(r)} exceeded ${Cr} attempts \u2014 evicting. `),await cc(r);continue}try{await wc({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${De(r)}. -`),await cc(r)}catch(s){try{await yc({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function wc(t){let e=re(),n=le();if(!v.existsSync(e))return 0;let r=0;return await E.withLock(n,async()=>{let s=await E.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await E.removeByFilter(s,i),await E.saveStore(s,e)}),r}var qf={high:4,medium:3,"low-medium":2,low:1};function zf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Vf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}function Wf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;e&&i.work_unit===e&&(o+=.1);let c=qf[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Kf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. +`),await cc(r)}catch(s){try{await yc({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function wc(t){let e=re(),n=le();if(!I.existsSync(e))return 0;let r=0;return await v.withLock(n,async()=>{let s=await v.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await v.removeByFilter(s,i),await v.saveStore(s,e)}),r}var qf={high:4,medium:3,"low-medium":2,low:1};function zf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Vf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}function Wf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;e&&i.work_unit===e&&(o+=.1);let c=qf[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Kf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Hf(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N] -`),process.exit(1));let s=t,i=e.limit||10,o=re(),c=X();if(!v.existsSync(o)){process.stdout.write(`[0 results] -`);return}let a=await E.loadStore(o),u="keyword-only",l=null,d=null;v.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=E.readMetadata(c),p=Kf(f,n,r);u=p.mode,l=p.provider,u==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":u==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let _=e.phase.split(",").map(I=>I.trim());g.phase=_.length===1?{eq:_[0]}:{in:_}}if(e.workType){let _=e.workType.split(",").map(I=>I.trim());g.work_type=_.length===1?{eq:_[0]}:{in:_}}if(e.topic){let _=e.topic.split(",").map(I=>I.trim());g.topic=_.length===1?{eq:_[0]}:{in:_}}let y=n.similarity_threshold||.8,h=Object.keys(g).length>0?g:void 0,m=new Map;for(let _ of s){let I;if(u==="full"&&l){let T=await ut(()=>l.embed(_),{maxAttempts:3,backoff:at});I=await E.searchHybrid(a,{term:_,vector:T,where:h,limit:i*2,similarity:y})}else I=await E.searchFulltext(a,{term:_,where:h,limit:i*2});for(let T of I){let D=m.get(T.id);(!D||T.score>D.score)&&m.set(T.id,T)}}let w=Wf(Array.from(m.values()),e.workUnit);w.length>i&&(w=w.slice(0,i));let S=[];d&&S.push(d),S.push(`[${w.length} results]`);for(let _ of w){S.push("");let I=Vf(_.timestamp);S.push(`[${_.phase} | ${_.work_unit}/${_.topic} | ${_.confidence} | ${I}]`),S.push(_.content),S.push(`Source: ${_.source_file}`)}process.stdout.write(S.join(` +`),process.exit(1));let s=t,i=e.limit||10,o=re(),c=X();if(!I.existsSync(o)){process.stdout.write(`[0 results] +`);return}let a=await v.loadStore(o),u="keyword-only",l=null,d=null;I.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=v.readMetadata(c),p=Kf(f,n,r);u=p.mode,l=p.provider,u==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":u==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let _=e.phase.split(",").map(x=>x.trim());g.phase=_.length===1?{eq:_[0]}:{in:_}}if(e.workType){let _=e.workType.split(",").map(x=>x.trim());g.work_type=_.length===1?{eq:_[0]}:{in:_}}if(e.topic){let _=e.topic.split(",").map(x=>x.trim());g.topic=_.length===1?{eq:_[0]}:{in:_}}let y=n.similarity_threshold||.8,h=Object.keys(g).length>0?g:void 0,m=new Map;for(let _ of s){let x;if(u==="full"&&l){let T=await ut(()=>l.embed(_),{maxAttempts:3,backoff:at});x=await v.searchHybrid(a,{term:_,vector:T,where:h,limit:i*2,similarity:y})}else x=await v.searchFulltext(a,{term:_,where:h,limit:i*2});for(let T of x){let D=m.get(T.id);(!D||T.score>D.score)&&m.set(T.id,T)}}let w=Wf(Array.from(m.values()),e.workUnit);w.length>i&&(w=w.slice(0,i));let S=[];d&&S.push(d),S.push(`[${w.length} results]`);for(let _ of w){S.push("");let x=Vf(_.timestamp);S.push(`[${_.phase} | ${_.work_unit}/${_.topic} | ${_.confidence} | ${x}]`),S.push(_.content),S.push(`Source: ${_.source_file}`)}process.stdout.write(S.join(` `)+` -`)}async function Gf(){let t=ne(),e=z.join(t,"config.json"),n=re();if(!v.existsSync(t)){process.stdout.write(`not-ready -`);return}if(!v.existsSync(e)){process.stdout.write(`not-ready -`);return}if(!v.existsSync(n)){process.stdout.write(`not-ready -`);return}try{await E.loadStore(n)}catch{process.stdout.write(`not-ready +`)}async function Gf(){let t=ne(),e=z.join(t,"config.json"),n=re();if(!I.existsSync(t)){process.stdout.write(`not-ready +`);return}if(!I.existsSync(e)){process.stdout.write(`not-ready +`);return}if(!I.existsSync(n)){process.stdout.write(`not-ready +`);return}try{await v.loadStore(n)}catch{process.stdout.write(`not-ready `);return}process.stdout.write(`ready -`)}async function Yf(){let t=ne(),e=re(),n=X(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!v.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` +`)}async function Yf(){let t=ne(),e=re(),n=X(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!I.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await E.loadStore(e),i=await E.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,a[h.work_type]=(a[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,m]of Object.entries(o))r.push(` ${h}: ${m}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,m]of Object.entries(c))r.push(` ${h}: ${m}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[h,m]of Object.entries(a))r.push(` ${h}: ${m}`)}r.push("");let l=(v.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),v.existsSync(n)){let h=E.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let w of h.pending)r.push(` ${w.file} \u2014 ${w.error} (${w.failed_at})`)}if(Array.isArray(h.pending_removals)&&h.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${h.pending_removals.length}`);for(let w of h.pending_removals)r.push(` ${De(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${Cr})`)}let m;try{m=Be.loadConfig()}catch{m=null}if(m){let w=Be.resolveProvider(m);h.provider&&w&&(h.provider!==m.provider||h.model!==w.model()||h.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(h.provider===null||h.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),v.existsSync(z.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=zr(),m=[];for(let w of h)await pc(s,w.workUnit,w.phase,w.topic)||m.push(w.file);if(m.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${m.length}`);for(let w of m)r.push(` ${w}`)}}catch(h){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${h.message} +`);return}let s=await v.loadStore(e),i=await v.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,a[h.work_type]=(a[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,m]of Object.entries(o))r.push(` ${h}: ${m}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,m]of Object.entries(c))r.push(` ${h}: ${m}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[h,m]of Object.entries(a))r.push(` ${h}: ${m}`)}r.push("");let l=(I.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),I.existsSync(n)){let h=v.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let w of h.pending)r.push(` ${w.file} \u2014 ${w.error} (${w.failed_at})`)}if(Array.isArray(h.pending_removals)&&h.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${h.pending_removals.length}`);for(let w of h.pending_removals)r.push(` ${De(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${Cr})`)}let m;try{m=Be.loadConfig()}catch{m=null}if(m){let w=Be.resolveProvider(m);h.provider&&w&&(h.provider!==m.provider||h.model!==w.model()||h.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(h.provider===null||h.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),I.existsSync(z.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=zr(),m=[];for(let w of h)await pc(s,w.workUnit,w.phase,w.topic)||m.push(w.file);if(m.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${m.length}`);for(let w of m)r.push(` ${w}`)}}catch(h){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${h.message} `)}let p=[];for(let h of Object.keys(o)){let m=_c(h);m&&m.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${h}`)}let g=i.filter(h=>h.phase==="specification"),y=new Set(g.map(h=>`${h.work_unit}.specification.${h.topic}`));for(let h of y)try{ct(["get",h,"status"]).trim()==="superseded"&&p.push(`Superseded spec still indexed: ${h}`)}catch{}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let h of p)r.push(` ${h}`)}process.stdout.write(r.join(` `)+` `)}async function Jf(t,e,n,r){let s=re(),i=X(),o=le();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. @@ -181,21 +181,26 @@ This is non-deterministic \u2014 the rebuilt index will differ from the original Type 'rebuild' to confirm: `),await Xf()!=="rebuild"&&(process.stderr.write(`Aborted. `),process.exit(1)),zr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1)),await E.withLock(o,async()=>{v.existsSync(s)&&v.unlinkSync(s),v.existsSync(i)&&v.unlinkSync(i);let u=r?r.dimensions():n&&n.dimensions||Br,l=await E.createStore(u);await E.saveStore(l,s),E.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. -`),await pn(e,n,r)}function Xf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Zf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`),process.exit(1));let u=s+".bak",l=i+".bak";await v.withLock(o,async()=>{I.existsSync(u)&&I.unlinkSync(u),I.existsSync(l)&&I.unlinkSync(l),I.existsSync(s)&&I.renameSync(s,u),I.existsSync(i)&&I.renameSync(i,l);let d=r?r.dimensions():n&&n.dimensions||Br,f=await v.createStore(d);await v.saveStore(f,s),v.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`);try{await pn(e,n,r)}catch(d){try{await v.withLock(o,async()=>{I.existsSync(u)&&(I.existsSync(s)&&I.unlinkSync(s),I.renameSync(u,s)),I.existsSync(l)&&(I.existsSync(i)&&I.unlinkSync(i),I.renameSync(l,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. +`)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. Previous index is at: + ${u} + ${l} +Rename them back manually to recover. Rollback error: ${f.message} +`)}throw d}I.existsSync(u)&&I.unlinkSync(u),I.existsSync(l)&&I.unlinkSync(l)}function Xf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Zf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1)),await mc();let n=re();if(!v.existsSync(n)){let s=ac(e);process.stdout.write(`Removed 0 chunks for ${s} +`),process.exit(1)),await mc();let n=re();if(!I.existsSync(n)){let s=ac(e);process.stdout.write(`Removed 0 chunks for ${s} `);return}let r=ac(e);try{let s=await wc(e);process.stdout.write(`Removed ${s} chunks for ${r} `)}catch(s){await yc(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. `),process.exit(1)}}function ac(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function _c(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){hn(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return hn(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Qf(t,e,n){await mc();let r=re(),s=le(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. 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diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 8eb380ed6..95c496d64 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1405,14 +1405,24 @@ async function cmdRebuild(_args, options, cfg, provider) { process.exit(1); } - // Acquire lock before deleting files so a concurrent index/remove/ + const spBak = sp + '.bak'; + const mpBak = mp + '.bak'; + + // Acquire lock before mutating files so a concurrent index/remove/ // compact does not race past and resurrect partial state. Then write // an empty placeholder store+metadata inside the same lock so there // is no "uninitialised" window where another process could build a // fresh store racing with our bulk-index. + // + // Use .bak rename rather than delete so a bulk-index failure (network + // outage, provider down, Ctrl-C) can be rolled back — otherwise a + // transient failure leaves the user with no store and no metadata. await store.withLock(lp, async () => { - if (fs.existsSync(sp)) fs.unlinkSync(sp); - if (fs.existsSync(mp)) fs.unlinkSync(mp); + // Clean any leftover .bak from a prior aborted rebuild. + if (fs.existsSync(spBak)) fs.unlinkSync(spBak); + if (fs.existsSync(mpBak)) fs.unlinkSync(mpBak); + if (fs.existsSync(sp)) fs.renameSync(sp, spBak); + if (fs.existsSync(mp)) fs.renameSync(mp, mpBak); // Write a sentinel empty store + keyword-only metadata so cmdCheck // and concurrent invocations see a valid (empty) state. The bulk @@ -1432,8 +1442,40 @@ async function cmdRebuild(_args, options, cfg, provider) { }); process.stdout.write('Deleted existing index.\n'); - // Run bulk index (acquires the lock per-file internally). - await cmdIndexBulk(options, cfg, provider); + try { + // Run bulk index (acquires the lock per-file internally). + await cmdIndexBulk(options, cfg, provider); + } catch (err) { + // Roll back to the pre-rebuild state. Best-effort: if the rollback + // itself fails (disk full, permission change), we surface both errors + // so the user has enough to recover manually. + try { + await store.withLock(lp, async () => { + if (fs.existsSync(spBak)) { + if (fs.existsSync(sp)) fs.unlinkSync(sp); + fs.renameSync(spBak, sp); + } + if (fs.existsSync(mpBak)) { + if (fs.existsSync(mp)) fs.unlinkSync(mp); + fs.renameSync(mpBak, mp); + } + }); + process.stderr.write( + 'Rebuild failed; restored previous index from backup.\n' + ); + } catch (rollbackErr) { + process.stderr.write( + `Rebuild failed and rollback also failed. Previous index is at:\n` + + ` ${spBak}\n ${mpBak}\n` + + `Rename them back manually to recover. Rollback error: ${rollbackErr.message}\n` + ); + } + throw err; + } + + // Bulk index succeeded — discard the backup. + if (fs.existsSync(spBak)) fs.unlinkSync(spBak); + if (fs.existsSync(mpBak)) fs.unlinkSync(mpBak); } /** diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 60a22784d..929a594c3 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -1432,6 +1432,25 @@ process.stdout.write(String(!m.pending_removals || m.pending_removals.length===0 ")" teardown_project +# --- Test 82: Rebuild cleans up .bak files on success and on leftover --- +echo "Test 82: Rebuild backup handling" +setup_project +create_work_unit "wu-a" "feature" "A" +write_stub_config +create_discussion_file "wu-a" "wu-a" +cd "$TEST_ROOT" && node "$MANIFEST_JS" init-phase wu-a.discussion.wu-a >/dev/null 2>&1 +cd "$TEST_ROOT" && node "$MANIFEST_JS" set wu-a.discussion.wu-a status completed >/dev/null 2>&1 +run_kb index .workflows/wu-a/discussion/wu-a.md >/dev/null 2>&1 +# Simulate a leftover .bak from a prior aborted rebuild. +touch "$TEST_ROOT/.workflows/.knowledge/store.msp.bak" +touch "$TEST_ROOT/.workflows/.knowledge/metadata.json.bak" +echo "rebuild" | run_kb rebuild >/dev/null 2>&1 +assert_eq "leftover .bak cleaned after successful rebuild" "true" \ + "$([ ! -f "$TEST_ROOT/.workflows/.knowledge/store.msp.bak" ] && [ ! -f "$TEST_ROOT/.workflows/.knowledge/metadata.json.bak" ] && echo true || echo false)" +assert_eq "store still present after rebuild" "true" \ + "$([ -f "$TEST_ROOT/.workflows/.knowledge/store.msp" ] && echo true || echo false)" +teardown_project + # --- Summary --- echo "" echo "Results: $PASS passed, $FAIL failed" From a2d81d66680caf032c287632931de84d50980c9f Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:28:56 +0100 Subject: [PATCH 10/78] fix(knowledge): evict pending index items after 10 retry attempts MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Items in metadata.pending that fail every catch-up retry stayed in the queue forever — a permanent failure (renamed work unit, malformed file) would cost 3 OpenAI calls per item per bulk-index run, indefinitely. Each entry now carries an attempts counter. processPendingQueue checks the counter at entry and evicts with a stderr warning once attempts reach PENDING_MAX_ATTEMPTS (10). The catch block that previously swallowed the retry failure now writes the failure back to the queue, bumping the counter so eviction eventually fires. status output updated to show attempt/max so users can see an item on the verge of eviction. Closes deferred-issues #2. --- .../workflow-knowledge/scripts/knowledge.cjs | 143 +++++++++--------- src/knowledge/index.js | 25 ++- 2 files changed, 91 insertions(+), 77 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 8aa3e5baa..5db7c9477 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,38 +1,38 @@ -"use strict";var b=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var dt=b(K=>{"use strict";Object.defineProperty(K,"__esModule",{value:!0});K.SUPPORTED_LANGUAGES=K.SPLITTERS=K.STEMMERS=void 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cn=b(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.Decoder=void 0;var wr=io(),kd=rn(),Te=en(),Od=Jt(),co=fr(),Pd=oo(),ue=Qt(),_r="array",rt="map_key",uo="map_value",Nd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new ue.DecodeError("The type of key must be string or number but "+typeof t)},Sr=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=_r,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===_r){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===uo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,Ir=new DataView(new ArrayBuffer(0)),Ud=new Uint8Array(Ir.buffer);try{Ir.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var ao=new RangeError("Insufficient data"),Rd=new Pd.CachedKeyDecoder,br=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Ir;bytes=Ud;headByte=nt;stack=new Sr;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??kd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??Te.UINT32_MAX,this.maxBinLength=e?.maxBinLength??Te.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??Te.UINT32_MAX,this.maxMapLength=e?.maxMapLength??Te.UINT32_MAX,this.maxExtLength=e?.maxExtLength??Te.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Rd,this.mapKeyConverter=e?.mapKeyConverter??Nd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,co.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,co.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,wr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw 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n=(0,ao.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,ao.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield 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Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function Qo(t){let e=$.systemConfigPath(),n=Xo(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Yo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Jo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Xo(){return{knowledge:{}}}function Zo(t){if(!be.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=be.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Qo(t){let e=Ie.join(t,"config.json"),n=Ie.join(t,"store.msp"),r=Ie.join(t,"metadata.json"),s=be.existsSync(t),i=be.existsSync(e),o=be.existsSync(n),c=be.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function dn({apiKey:t,model:e,dimensions:n}){let s=await new Pf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function fn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function ec(t){let e=$.systemConfigPath(),n=Zo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} @@ -51,12 +51,12 @@ Embedding provider: `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) `);let s;for(;s=(await ln(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return $.writeConfigFile(e,Yo()),process.stdout.write(` +`);if(s==="skip")return $.writeConfigFile(e,Jo()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await ln(t,"Embedding model",qo),o=await ln(t,"Vector dimensions",String(zo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),$.writeConfigFile(e,Go({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await ln(t,"Embedding model",zo),o=await ln(t,"Vector dimensions",String(Vo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),$.writeConfigFile(e,Yo({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let a=$.PROVIDER_ENV_VARS.openai;return await ec(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function ec(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`);let a=$.PROVIDER_ENV_VARS.openai;return await tc(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function tc(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... `);try{await dn({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. `)}catch(c){let{message:a,hint:u}=fn(c);process.stdout.write(`${a} @@ -69,7 +69,7 @@ Found an existing API key in ${s} \u2014 validating via a test embed... ${u} `),!await Fe(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await Of(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Of(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await Nf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Nf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -85,7 +85,7 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await Ho(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await Go(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... @@ -95,7 +95,7 @@ Validating via a test embed... `),!await Fe(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function tc(t){let e=Ie.resolve(process.cwd(),".workflows",".knowledge"),n=Ie.join(e,"config.json"),r=Ie.join(e,"store.msp"),s=Ie.join(e,"metadata.json"),i=Zo(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}}async function nc(t){let e=Ie.resolve(process.cwd(),".workflows",".knowledge"),n=Ie.join(e,"config.json"),r=Ie.join(e,"store.msp"),s=Ie.join(e,"metadata.json"),i=Qo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await Fe(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -103,27 +103,27 @@ Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);be.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Jo()),process.stdout.write(` config.json written -`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Vo;if(!i.storeExists||i.fullyInitialised){let u=await Lr.createStore(a);await Lr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) -`)}return(!i.metadataExists||i.fullyInitialised)&&(Lr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function nc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` +`);be.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Xo()),process.stdout.write(` config.json written +`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Wo;if(!i.storeExists||i.fullyInitialised){let u=await jr.createStore(a);await jr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) +`)}return(!i.metadataExists||i.fullyInitialised)&&(jr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written +`)),{created:!0,provider:c,dimensions:a}}async function rc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function Pf(t,e,n){Wo();let r=Ie.resolve(process.cwd(),".workflows");be.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=Ko(),i;try{process.stdout.write(` +`)}}async function Uf(t,e,n){Ko();let r=Ie.resolve(process.cwd(),".workflows");be.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=Ho(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await Qo(s),await tc(s)}finally{s.close()}await nc(t,n),process.stdout.write(` +`),i=await ec(s),await nc(s)}finally{s.close()}await rc(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}rc.exports={cmdSetup:Pf,requireTTY:Wo,createPrompter:Ko,ask:ln,askYesNo:Fe,askSecret:Ho,buildSystemConfigOpenAI:Go,buildSystemConfigStub:Yo,buildProjectConfigEmpty:Jo,detectSystemConfig:Xo,detectProjectInit:Zo,validateApiKey:dn,describeValidationError:fn,ensureOpenAIKey:ec,runSystemConfigStep:Qo,runProjectInitStep:tc,runInitialIndexStep:nc,KEYWORD_ONLY_DIMENSIONS:Vo,OPENAI_DEFAULT_MODEL:qo,OPENAI_DEFAULT_DIMENSIONS:zo}});var I=require("fs"),z=require("path"),v=Dr(),uc=Do(),{StubProvider:Nf}=kr(),{OpenAIProvider:Uf}=un(),Be=Rr(),lc=sc(),Fr=["research","discussion","investigation","specification"],Rf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(I.existsSync(t))return t;if(I.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}sc.exports={cmdSetup:Uf,requireTTY:Ko,createPrompter:Ho,ask:ln,askYesNo:Fe,askSecret:Go,buildSystemConfigOpenAI:Yo,buildSystemConfigStub:Jo,buildProjectConfigEmpty:Xo,detectSystemConfig:Zo,detectProjectInit:Qo,validateApiKey:dn,describeValidationError:fn,ensureOpenAIKey:tc,runSystemConfigStep:ec,runProjectInitStep:nc,runInitialIndexStep:rc,KEYWORD_ONLY_DIMENSIONS:Wo,OPENAI_DEFAULT_MODEL:zo,OPENAI_DEFAULT_DIMENSIONS:Vo}});var I=require("fs"),z=require("path"),v=Mr(),lc=Mo(),{StubProvider:Rf}=Or(),{OpenAIProvider:Lf}=un(),Be=Lr(),dc=ic(),Br=["research","discussion","investigation","specification"],jf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(I.existsSync(t))return t;if(I.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),at=[1e3,2e3,4e3],Lf=5,Br=1536,ic=!1;function dc(t){let e=[],n={},r=0;for(;r [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),at=[1e3,2e3,4e3],Cf=5,Cr=10,$r=1536,oc=!1;function fc(t){let e=[],n={},r=0;for(;r [options] Commands: index Index a file or all pending artifacts @@ -141,66 +141,67 @@ Options: --phase Filter by phase --topic Filter by topic --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function X(){return z.join(ne(),"metadata.json")}function le(){return z.join(ne(),".lock")}function jf(t){return new Promise(e=>setTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;isetTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;iqr(s,o,n,r),{maxAttempts:3,backoff:at});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await gc(n,r,Lf)}async function qr(t,e,n,r){let s=Cf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!I.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(I.readFileSync(i,"utf8")),c=z.resolve(t),a=I.readFileSync(c,"utf8"),u=uc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=X(),p=le();I.existsSync(l)||I.mkdirSync(l,{recursive:!0});let g,y,h=I.existsSync(d),m=I.existsSync(f);h&&(g=await v.loadStore(d)),m&&(y=v.readMetadata(f),Array.isArray(y.pending)||(y.pending=[]));let w,S;if(y){let A=hc(y,n,r);w=A.mode,S=A.provider}else r?(w="full",S=r):(w="keyword-only",S=null);if(!g){let A=S?S.dimensions():n.dimensions||Br;g=await v.createStore(A)}let _=null;if(w==="full"&&S&&u.length>0){let A=u.map(P=>P.content);_=await S.embedBatch(A)}let x=Date.now(),T=o.confidence||"medium",D=u.map((A,P)=>{let Me=String(P+1).padStart(3,"0"),Z={id:`${e.workUnit}-${e.phase}-${e.topic}-${Me}`,content:A.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:x};return _&&(Z.embedding=_[P]),Z});return await v.withLock(p,async()=>{h?g=await v.loadStore(d):I.existsSync(d)&&(g=await v.loadStore(d)),await v.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let P of D)await v.insertDocument(g,P);await v.saveStore(g,d);let A=I.existsSync(f)?v.readMetadata(f):null;if(A)A.last_indexed=new Date().toISOString(),Array.isArray(A.pending)||(A.pending=[]),v.writeMetadata(f,A);else{let P={provider:S?n.provider:null,model:S?S.model():null,dimensions:S?S.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};v.writeMetadata(f,P)}}),D.length}function ct(t){let{execFileSync:e}=require("child_process");return e("node",[Rf,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function Bf(t){let e=t&&t.stderr?String(t.stderr):"";return/not found|does not exist/i.test(e)}function hn(t,e){if(Bf(e))return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} -`)}async function pc(t,e,n,r){return(await v.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function zr(){let t=[],e;try{let n=ct(["list"]);e=JSON.parse(n)}catch(n){return hn("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Fr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let u=ct(["resolve",`${r}.${s}.${o}`]).trim();u&&I.existsSync(z.resolve(u))&&t.push({file:u,workUnit:r,phase:s,topic:o})}catch(a){hn(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function pn(t,e,n){let r=zr(),s=ne(),i=re();I.existsSync(s)||I.mkdirSync(s,{recursive:!0});let o=null;I.existsSync(i)&&(o=await v.loadStore(i));let c=0,a=0,u=0;for(let l of r){if(o&&await pc(o,l.workUnit,l.phase,l.topic)){u++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await ut(()=>qr(l.file,d,e,n),{maxAttempts:3,backoff:at});process.stdout.write(`Indexing ${l.file}... ${f} chunks -`),c++,a+=f,I.existsSync(i)&&(o=await v.loadStore(i))}catch(d){await $f(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. -`)}}await gc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${u} already indexed. -`)}async function $f(t,e){let n=X(),r=ne(),s=le();I.existsSync(r)||I.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;I.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};o>=0?i.pending[o]=c:i.pending.push(c),v.writeMetadata(n,i)})}async function jr(t){let e=X(),n=le();I.existsSync(e)&&await v.withLock(n,async()=>{if(!I.existsSync(e))return;let r=v.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),v.writeMetadata(e,r))})}async function gc(t,e,n){let r=X();if(!I.existsSync(r))return;let s=v.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){let c=z.resolve(o.file);if(!I.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. 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Run \`knowledge rebuild\` to reindex. + Current config has no provider configured.`)}async function $f(t,e,n,r){if(t.length===0)return gn(e,n,r);let s=t[0],i=z.resolve(s);I.existsSync(i)||(process.stderr.write(`File not found: ${i} +`),process.exit(1));let o=qr(s),c=await ut(()=>zr(s,o,n,r),{maxAttempts:3,backoff:at});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await mc(n,r,Cf)}async function zr(t,e,n,r){let s=Bf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!I.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(I.readFileSync(i,"utf8")),c=z.resolve(t),a=I.readFileSync(c,"utf8"),u=lc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. 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Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),I.existsSync(z.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=zr(),m=[];for(let w of h)await pc(s,w.workUnit,w.phase,w.topic)||m.push(w.file);if(m.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${m.length}`);for(let w of m)r.push(` ${w}`)}}catch(h){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${h.message} -`)}let p=[];for(let h of Object.keys(o)){let m=_c(h);m&&m.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${h}`)}let g=i.filter(h=>h.phase==="specification"),y=new Set(g.map(h=>`${h.work_unit}.specification.${h.topic}`));for(let h of y)try{ct(["get",h,"status"]).trim()==="superseded"&&p.push(`Superseded spec still indexed: ${h}`)}catch{}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let h of p)r.push(` ${h}`)}process.stdout.write(r.join(` +`);return}let s=await v.loadStore(e),i=await v.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,a[h.work_type]=(a[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,w]of Object.entries(o))r.push(` ${h}: ${w}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,w]of Object.entries(c))r.push(` ${h}: ${w}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[h,w]of Object.entries(a))r.push(` ${h}: ${w}`)}r.push("");let l=(I.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),I.existsSync(n)){let h=v.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let m of h.pending){let S=m.attempts||1;r.push(` ${m.file} \u2014 ${m.error} (attempt ${S}/${Cr}, ${m.failed_at})`)}}if(Array.isArray(h.pending_removals)&&h.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${h.pending_removals.length}`);for(let m of h.pending_removals)r.push(` ${De(m)} \u2014 ${m.error} (attempt ${m.attempts||1}/${Fr})`)}let w;try{w=Be.loadConfig()}catch{w=null}if(w){let m=Be.resolveProvider(w);h.provider&&m&&(h.provider!==w.provider||h.model!==m.model()||h.dimensions!==m.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. 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f)h.push(` \u2022 ${m.workUnit}: ${m.count} chunks (${Array.from(m.phases).join(", ")})`);process.stdout.write(h.join(` +`),process.exit(1));let o=i;if(!I.existsSync(r))return;let c=await v.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await v.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let h of l)d[h.work_unit]||(d[h.work_unit]=[]),d[h.work_unit].push(h);let f=[],p=[];for(let[h,w]of Object.entries(d)){let m=bc(h);if(!m||m.status!=="completed"||!m.completed_at)continue;let S=Vf(m.completed_at);if(!S||isNaN(S.getTime()))continue;let _=new Date(S);if(_.setMonth(_.getMonth()+o),_>a)continue;let x=w.filter(D=>D.phase!=="specification");if(x.length===0)continue;let T=new Set(x.map(D=>D.phase));f.push({workUnit:h,count:x.length,phases:T});for(let D of x)p.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((h,w)=>h+w.count,0);if(e.dryRun){let h=[];h.push(`[dry-run] Compacted: removed ${g} 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f)y.push(` \u2022 ${h.workUnit}: ${h.count} chunks (${Array.from(h.phases).join(", ")})`);process.stdout.write(y.join(` `)+` -`)}async function Sc(){let t=process.argv.slice(2),{positional:e,flags:n}=dc(t),r=e[0],s=e.slice(1),i=fc(n);r||(process.stderr.write(oc+` -`),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Be.loadConfig(),c=Be.resolveProvider(o)),r){case"index":await Ff(s,i,o,c);break;case"query":await Hf(s,i,o,c);break;case"check":await Gf(s,i,o,c);break;case"status":await Yf();break;case"remove":await Zf(s,i,o,c);break;case"compact":await Qf(s,i,o,c);break;case"rebuild":await Jf(s,i,o,c);break;case"setup":await lc.cmdSetup(pn,s,i);break;default:process.stderr.write(`Unknown command "${r}". +`)}async function Ic(){let t=process.argv.slice(2),{positional:e,flags:n}=fc(t),r=e[0],s=e.slice(1),i=hc(n);r||(process.stderr.write(cc+` +`),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Be.loadConfig(),c=Be.resolveProvider(o)),r){case"index":await $f(s,i,o,c);break;case"query":await Gf(s,i,o,c);break;case"check":await Yf(s,i,o,c);break;case"status":await Jf();break;case"remove":await Qf(s,i,o,c);break;case"compact":await eh(s,i,o,c);break;case"rebuild":await Xf(s,i,o,c);break;case"setup":await dc.cmdSetup(gn,s,i);break;default:process.stderr.write(`Unknown command "${r}". -${oc} -`),process.exit(1)}}module.exports={parseArgs:dc,buildOptions:fc,deriveIdentity:$r,resolveProviderState:hc,withRetry:ut,main:Sc,cmdIndexBulk:pn,StubProvider:Nf,OpenAIProvider:Uf,store:v,chunker:uc,config:Be,setup:lc,knowledgeDir:ne,storePath:re,metadataPath:X,lockFilePath:le,INDEXED_PHASES:Fr,KEYWORD_ONLY_DIMENSIONS:Br};require.main===module&&Sc().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` +${cc} +`),process.exit(1)}}module.exports={parseArgs:fc,buildOptions:hc,deriveIdentity:qr,resolveProviderState:pc,withRetry:ut,main:Ic,cmdIndexBulk:gn,StubProvider:Rf,OpenAIProvider:Lf,store:v,chunker:lc,config:Be,setup:dc,knowledgeDir:ne,storePath:re,metadataPath:X,lockFilePath:le,INDEXED_PHASES:Br,KEYWORD_ONLY_DIMENSIONS:$r};require.main===module&&Ic().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 95c496d64..3fedd6eac 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -41,6 +41,7 @@ const MANIFEST_JS = (() => { const DEFAULT_RETRY_BACKOFF = [1000, 2000, 4000]; const PENDING_CATCHUP_LIMIT = 5; +const PENDING_MAX_ATTEMPTS = 10; // Default dimensions when creating a store in keyword-only mode. // The store schema requires a dimension parameter, but keyword-only docs @@ -709,11 +710,12 @@ async function addToPendingQueue(file, errorMsg) { if (!Array.isArray(metadata.pending)) metadata.pending = []; const existing = metadata.pending.findIndex((p) => p.file === file); - const entry = { file, failed_at: new Date().toISOString(), error: errorMsg }; + const base = { file, failed_at: new Date().toISOString(), error: errorMsg }; if (existing >= 0) { - metadata.pending[existing] = entry; + const prior = metadata.pending[existing]; + metadata.pending[existing] = { ...base, attempts: (prior.attempts || 1) + 1 }; } else { - metadata.pending.push(entry); + metadata.pending.push({ ...base, attempts: 1 }); } store.writeMetadata(mp, metadata); }); @@ -748,6 +750,15 @@ async function processPendingQueue(cfg, provider, limit) { const toProcess = metadata.pending.slice(0, limit); for (const item of toProcess) { + if ((item.attempts || 0) >= PENDING_MAX_ATTEMPTS) { + // Permanent failure — evict so the queue doesn't grow forever. + process.stderr.write( + `Pending item ${item.file} exceeded ${PENDING_MAX_ATTEMPTS} attempts — evicting. Last error: ${item.error}\n` + ); + await removePendingItem(item.file); + continue; + } + const absFile = path.resolve(item.file); if (!fs.existsSync(absFile)) { // File no longer exists — remove from queue. @@ -771,8 +782,9 @@ async function processPendingQueue(cfg, provider, limit) { { maxAttempts: 3, backoff: DEFAULT_RETRY_BACKOFF } ); await removePendingItem(item.file); - } catch (_) { - // Still failing — leave in queue. + } catch (err) { + // Still failing — bump attempts so eviction eventually fires. + await addToPendingQueue(item.file, err.message); } } } @@ -1259,7 +1271,8 @@ async function cmdStatus() { out.push(''); out.push(`Pending items: ${metadata.pending.length}`); for (const p of metadata.pending) { - out.push(` ${p.file} — ${p.error} (${p.failed_at})`); + const a = p.attempts || 1; + out.push(` ${p.file} — ${p.error} (attempt ${a}/${PENDING_MAX_ATTEMPTS}, ${p.failed_at})`); } } From b48502910b507bfe359fc1d84a364b0b8a3ef0fd Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:29:22 +0100 Subject: [PATCH 11/78] fix(knowledge): raise store lock timeout to 30s to match design MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Design doc specifies a 30s lock timeout; implementation had 10s — minor correctness concern under sustained concurrent phase-completion indexing (multiple Claude sessions writing artefacts at once). Align with design. LOCK_STALE_MS was already 30s. --- skills/workflow-knowledge/scripts/knowledge.cjs | 2 +- src/knowledge/store.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 5db7c9477..9fda15622 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -8,7 +8,7 @@ Read more at https://docs.orama.com/docs/orama-js/plugins/plugin-secure-proxy#pl `,PLUGIN_SECURE_PROXY_MISSING_CHAT_MODEL:`Could not find a chat model defined in the secure proxy plugin configuration. Please provide a chat model before proceeding with creating an answer session. Read more at https://docs.orama.com/docs/orama-js/plugins/plugin-secure-proxy#plugin-secure-proxy -`,ANSWER_SESSION_LAST_MESSAGE_IS_NOT_ASSISTANT:"The last message in the session is not an assistant message. 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if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,ro.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,ro.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,vd.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,so.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,so.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};ee.Encoder=pr});var io=b(yr=>{"use strict";Object.defineProperty(yr,"__esModule",{value:!0});yr.encode=Td;var Ad=gr();function Td(t,e){return new Ad.Encoder(e).encodeSharedRef(t)}});var oo=b(mr=>{"use strict";Object.defineProperty(mr,"__esModule",{value:!0});mr.prettyByte=Dd;function Dd(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var co=b(sn=>{"use strict";Object.defineProperty(sn,"__esModule",{value:!0});sn.CachedKeyDecoder=void 0;var Md=Jt(),kd=16,Od=16,wr=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=kd,n=Od){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Md.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};sn.CachedKeyDecoder=wr});var cn=b(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.Decoder=void 0;var _r=oo(),Pd=rn(),Te=en(),Nd=Jt(),ao=hr(),Ud=co(),ue=Qt(),Sr="array",rt="map_key",lo="map_value",Rd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new ue.DecodeError("The type of key must be string or number but "+typeof t)},br=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=Sr,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===Sr){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===lo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,xr=new DataView(new ArrayBuffer(0)),Ld=new Uint8Array(xr.buffer);try{xr.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var uo=new RangeError("Insufficient data"),jd=new Ud.CachedKeyDecoder,Ir=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=xr;bytes=Ld;headByte=nt;stack=new br;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Pd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??Te.UINT32_MAX,this.maxBinLength=e?.maxBinLength??Te.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??Te.UINT32_MAX,this.maxMapLength=e?.maxMapLength??Te.UINT32_MAX,this.maxExtLength=e?.maxExtLength??Te.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:jd,this.mapKeyConverter=e?.mapKeyConverter??Rd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,ao.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,ao.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,_r.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new ue.DecodeError(`Unrecognized type byte: ${(0,_r.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Sr)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new ue.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=lo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new ue.DecodeError(`Unrecognized array type byte: ${(0,_r.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new ue.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new ue.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new ue.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new ue.DecodeError(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw uo;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new ue.DecodeError(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=(0,Te.getUint64)(this.view,this.pos);return this.pos+=8,e}readI64(){let e=(0,Te.getInt64)(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}};on.Decoder=Ir});var ho=b(an=>{"use strict";Object.defineProperty(an,"__esModule",{value:!0});an.decode=Cd;an.decodeMulti=Fd;var fo=cn();function Cd(t,e){return new fo.Decoder(e).decode(t)}function Fd(t,e){return new fo.Decoder(e).decodeMulti(t)}});var yo=b(st=>{"use strict";Object.defineProperty(st,"__esModule",{value:!0});st.isAsyncIterable=po;st.asyncIterableFromStream=go;st.ensureAsyncIterable=Bd;function po(t){return t[Symbol.asyncIterator]!=null}async function*go(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Bd(t){return po(t)?t:go(t)}});var mo=b(it=>{"use strict";Object.defineProperty(it,"__esModule",{value:!0});it.decodeAsync=$d;it.decodeArrayStream=qd;it.decodeMultiStream=zd;var Er=cn(),vr=yo();async function $d(t,e){let n=(0,vr.ensureAsyncIterable)(t);return new Er.Decoder(e).decodeAsync(n)}function qd(t,e){let n=(0,vr.ensureAsyncIterable)(t);return new Er.Decoder(e).decodeArrayStream(n)}function zd(t,e){let n=(0,vr.ensureAsyncIterable)(t);return new Er.Decoder(e).decodeStream(n)}});var _o=b(M=>{"use strict";Object.defineProperty(M,"__esModule",{value:!0});M.decodeTimestampExtension=M.encodeTimestampExtension=M.decodeTimestampToTimeSpec=M.encodeTimeSpecToTimestamp=M.encodeDateToTimeSpec=M.EXT_TIMESTAMP=M.ExtData=M.ExtensionCodec=M.Encoder=M.DecodeError=M.Decoder=M.decodeMultiStream=M.decodeArrayStream=M.decodeAsync=M.decodeMulti=M.decode=M.encode=void 0;var Vd=io();Object.defineProperty(M,"encode",{enumerable:!0,get:function(){return Vd.encode}});var wo=ho();Object.defineProperty(M,"decode",{enumerable:!0,get:function(){return wo.decode}});Object.defineProperty(M,"decodeMulti",{enumerable:!0,get:function(){return wo.decodeMulti}});var Ar=mo();Object.defineProperty(M,"decodeAsync",{enumerable:!0,get:function(){return Ar.decodeAsync}});Object.defineProperty(M,"decodeArrayStream",{enumerable:!0,get:function(){return Ar.decodeArrayStream}});Object.defineProperty(M,"decodeMultiStream",{enumerable:!0,get:function(){return Ar.decodeMultiStream}});var Wd=cn();Object.defineProperty(M,"Decoder",{enumerable:!0,get:function(){return Wd.Decoder}});var Kd=Qt();Object.defineProperty(M,"DecodeError",{enumerable:!0,get:function(){return Kd.DecodeError}});var Hd=gr();Object.defineProperty(M,"Encoder",{enumerable:!0,get:function(){return Hd.Encoder}});var Gd=rn();Object.defineProperty(M,"ExtensionCodec",{enumerable:!0,get:function(){return Gd.ExtensionCodec}});var Yd=ar();Object.defineProperty(M,"ExtData",{enumerable:!0,get:function(){return 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if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,ro.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,ro.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,vd.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,so.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,so.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};ee.Encoder=pr});var io=b(yr=>{"use strict";Object.defineProperty(yr,"__esModule",{value:!0});yr.encode=Td;var Ad=gr();function Td(t,e){return new Ad.Encoder(e).encodeSharedRef(t)}});var oo=b(mr=>{"use strict";Object.defineProperty(mr,"__esModule",{value:!0});mr.prettyByte=Dd;function Dd(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var co=b(sn=>{"use strict";Object.defineProperty(sn,"__esModule",{value:!0});sn.CachedKeyDecoder=void 0;var Md=Jt(),kd=16,Od=16,wr=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=kd,n=Od){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Md.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};sn.CachedKeyDecoder=wr});var cn=b(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.Decoder=void 0;var _r=oo(),Pd=rn(),Te=en(),Nd=Jt(),ao=hr(),Ud=co(),ue=Qt(),Sr="array",rt="map_key",lo="map_value",Rd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new ue.DecodeError("The type of key must be string or number but "+typeof t)},br=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=Sr,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===Sr){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===lo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,xr=new DataView(new ArrayBuffer(0)),Ld=new Uint8Array(xr.buffer);try{xr.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var uo=new RangeError("Insufficient data"),jd=new Ud.CachedKeyDecoder,Ir=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=xr;bytes=Ld;headByte=nt;stack=new br;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Pd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??Te.UINT32_MAX,this.maxBinLength=e?.maxBinLength??Te.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??Te.UINT32_MAX,this.maxMapLength=e?.maxMapLength??Te.UINT32_MAX,this.maxExtLength=e?.maxExtLength??Te.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:jd,this.mapKeyConverter=e?.mapKeyConverter??Rd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,ao.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,ao.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,_r.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new ue.DecodeError(`Unrecognized type byte: ${(0,_r.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Sr)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new ue.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=lo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new ue.DecodeError(`Unrecognized array type byte: ${(0,_r.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new ue.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new ue.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new ue.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new ue.DecodeError(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw uo;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new ue.DecodeError(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=(0,Te.getUint64)(this.view,this.pos);return this.pos+=8,e}readI64(){let e=(0,Te.getInt64)(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}};on.Decoder=Ir});var ho=b(an=>{"use strict";Object.defineProperty(an,"__esModule",{value:!0});an.decode=Cd;an.decodeMulti=Fd;var fo=cn();function Cd(t,e){return new fo.Decoder(e).decode(t)}function Fd(t,e){return new fo.Decoder(e).decodeMulti(t)}});var yo=b(st=>{"use strict";Object.defineProperty(st,"__esModule",{value:!0});st.isAsyncIterable=po;st.asyncIterableFromStream=go;st.ensureAsyncIterable=Bd;function po(t){return t[Symbol.asyncIterator]!=null}async function*go(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Bd(t){return po(t)?t:go(t)}});var mo=b(it=>{"use strict";Object.defineProperty(it,"__esModule",{value:!0});it.decodeAsync=$d;it.decodeArrayStream=qd;it.decodeMultiStream=zd;var Er=cn(),vr=yo();async function $d(t,e){let n=(0,vr.ensureAsyncIterable)(t);return new Er.Decoder(e).decodeAsync(n)}function qd(t,e){let n=(0,vr.ensureAsyncIterable)(t);return new Er.Decoder(e).decodeArrayStream(n)}function zd(t,e){let n=(0,vr.ensureAsyncIterable)(t);return new Er.Decoder(e).decodeStream(n)}});var _o=b(M=>{"use strict";Object.defineProperty(M,"__esModule",{value:!0});M.decodeTimestampExtension=M.encodeTimestampExtension=M.decodeTimestampToTimeSpec=M.encodeTimeSpecToTimestamp=M.encodeDateToTimeSpec=M.EXT_TIMESTAMP=M.ExtData=M.ExtensionCodec=M.Encoder=M.DecodeError=M.Decoder=M.decodeMultiStream=M.decodeArrayStream=M.decodeAsync=M.decodeMulti=M.decode=M.encode=void 0;var Vd=io();Object.defineProperty(M,"encode",{enumerable:!0,get:function(){return Vd.encode}});var wo=ho();Object.defineProperty(M,"decode",{enumerable:!0,get:function(){return wo.decode}});Object.defineProperty(M,"decodeMulti",{enumerable:!0,get:function(){return wo.decodeMulti}});var Ar=mo();Object.defineProperty(M,"decodeAsync",{enumerable:!0,get:function(){return Ar.decodeAsync}});Object.defineProperty(M,"decodeArrayStream",{enumerable:!0,get:function(){return Ar.decodeArrayStream}});Object.defineProperty(M,"decodeMultiStream",{enumerable:!0,get:function(){return Ar.decodeMultiStream}});var Wd=cn();Object.defineProperty(M,"Decoder",{enumerable:!0,get:function(){return Wd.Decoder}});var Kd=Qt();Object.defineProperty(M,"DecodeError",{enumerable:!0,get:function(){return Kd.DecodeError}});var Hd=gr();Object.defineProperty(M,"Encoder",{enumerable:!0,get:function(){return Hd.Encoder}});var Gd=rn();Object.defineProperty(M,"ExtensionCodec",{enumerable:!0,get:function(){return Gd.ExtensionCodec}});var Yd=ar();Object.defineProperty(M,"ExtData",{enumerable:!0,get:function(){return 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If a concurrent rebuild rewrote the store schema with different dimensions between embed and insert, insertDocument would fail (wrong vector width) or corrupt the index. Rare in single-developer use, but Phase 5+ skill orchestration can run multiple index/rebuild flows back to back. Inside the lock, after reloading the store, compare the reloaded metadata's dimensions to what we embedded with. On mismatch, throw — the withRetry wrapper at the CLI entry re-runs from the top with fresh metadata and a fresh embedBatch against the new schema. Closes deferred-issues #1. --- .../workflow-knowledge/scripts/knowledge.cjs | 44 +++++++++---------- src/knowledge/index.js | 17 +++++++ 2 files changed, 39 insertions(+), 22 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 9fda15622..2ba4f742f 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -8,31 +8,31 @@ Read more at https://docs.orama.com/docs/orama-js/plugins/plugin-secure-proxy#pl `,PLUGIN_SECURE_PROXY_MISSING_CHAT_MODEL:`Could not find a chat model defined in the secure proxy plugin configuration. Please provide a chat model before proceeding with creating an answer session. Read more at https://docs.orama.com/docs/orama-js/plugins/plugin-secure-proxy#plugin-secure-proxy -`,ANSWER_SESSION_LAST_MESSAGE_IS_NOT_ASSISTANT:"The last message in the session is not an assistant message. 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t{extensionCodec;context;useBigInt64;maxDepth;initialBufferSize;sortKeys;forceFloat32;ignoreUndefined;forceIntegerToFloat;pos;view;bytes;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Ed.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.maxDepth=e?.maxDepth??ee.DEFAULT_MAX_DEPTH,this.initialBufferSize=e?.initialBufferSize??ee.DEFAULT_INITIAL_BUFFER_SIZE,this.sortKeys=e?.sortKeys??!1,this.forceFloat32=e?.forceFloat32??!1,this.ignoreUndefined=e?.ignoreUndefined??!1,this.forceIntegerToFloat=e?.forceIntegerToFloat??!1,this.pos=0,this.view=new DataView(new ArrayBuffer(this.initialBufferSize)),this.bytes=new Uint8Array(this.view.buffer)}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,maxDepth:this.maxDepth,initialBufferSize:this.initialBufferSize,sortKeys:this.sortKeys,forceFloat32:this.forceFloat32,ignoreUndefined:this.ignoreUndefined,forceIntegerToFloat:this.forceIntegerToFloat})}reinitializeState(){this.pos=0}encodeSharedRef(e){if(this.entered)return this.clone().encodeSharedRef(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.subarray(0,this.pos)}finally{this.entered=!1}}encode(e){if(this.entered)return this.clone().encode(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.slice(0,this.pos)}finally{this.entered=!1}}doEncode(e,n){if(n>this.maxDepth)throw new Error(`Too deep objects in depth ${n}`);e==null?this.encodeNil():typeof e=="boolean"?this.encodeBoolean(e):typeof e=="number"?this.forceIntegerToFloat?this.encodeNumberAsFloat(e):this.encodeNumber(e):typeof e=="string"?this.encodeString(e):this.useBigInt64&&typeof e=="bigint"?this.encodeBigInt64(e):this.encodeObject(e,n)}ensureBufferSizeToWrite(e){let n=this.pos+e;this.view.byteLength=0?e<128?this.writeU8(e):e<256?(this.writeU8(204),this.writeU8(e)):e<65536?(this.writeU8(205),this.writeU16(e)):e<4294967296?(this.writeU8(206),this.writeU32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(207),this.writeU64(e)):e>=-32?this.writeU8(224|e+32):e>=-128?(this.writeU8(208),this.writeI8(e)):e>=-32768?(this.writeU8(209),this.writeI16(e)):e>=-2147483648?(this.writeU8(210),this.writeI32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(211),this.writeI64(e)):this.encodeNumberAsFloat(e)}encodeNumberAsFloat(e){this.forceFloat32?(this.writeU8(202),this.writeF32(e)):(this.writeU8(203),this.writeF64(e))}encodeBigInt64(e){e>=BigInt(0)?(this.writeU8(207),this.writeBigUint64(e)):(this.writeU8(211),this.writeBigInt64(e))}writeStringHeader(e){if(e<32)this.writeU8(160+e);else if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,ro.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,ro.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,vd.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,so.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,so.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};ee.Encoder=pr});var io=b(yr=>{"use strict";Object.defineProperty(yr,"__esModule",{value:!0});yr.encode=Td;var Ad=gr();function Td(t,e){return new Ad.Encoder(e).encodeSharedRef(t)}});var oo=b(mr=>{"use strict";Object.defineProperty(mr,"__esModule",{value:!0});mr.prettyByte=Dd;function Dd(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var co=b(sn=>{"use strict";Object.defineProperty(sn,"__esModule",{value:!0});sn.CachedKeyDecoder=void 0;var Md=Jt(),kd=16,Od=16,wr=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=kd,n=Od){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Md.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};sn.CachedKeyDecoder=wr});var cn=b(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.Decoder=void 0;var _r=oo(),Pd=rn(),Te=en(),Nd=Jt(),ao=hr(),Ud=co(),ue=Qt(),Sr="array",rt="map_key",lo="map_value",Rd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new ue.DecodeError("The type of key must be string or number but "+typeof t)},br=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=Sr,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===Sr){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===lo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,xr=new DataView(new ArrayBuffer(0)),Ld=new Uint8Array(xr.buffer);try{xr.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var uo=new RangeError("Insufficient data"),jd=new Ud.CachedKeyDecoder,Ir=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=xr;bytes=Ld;headByte=nt;stack=new br;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Pd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??Te.UINT32_MAX,this.maxBinLength=e?.maxBinLength??Te.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??Te.UINT32_MAX,this.maxMapLength=e?.maxMapLength??Te.UINT32_MAX,this.maxExtLength=e?.maxExtLength??Te.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:jd,this.mapKeyConverter=e?.mapKeyConverter??Rd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,ao.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,ao.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,_r.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new ue.DecodeError(`Unrecognized type byte: ${(0,_r.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Sr)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new ue.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=lo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new ue.DecodeError(`Unrecognized array type byte: ${(0,_r.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new ue.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new ue.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new ue.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new ue.DecodeError(`Max length exceeded: bin length (${e}) 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t{extensionCodec;context;useBigInt64;maxDepth;initialBufferSize;sortKeys;forceFloat32;ignoreUndefined;forceIntegerToFloat;pos;view;bytes;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Ed.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.maxDepth=e?.maxDepth??ee.DEFAULT_MAX_DEPTH,this.initialBufferSize=e?.initialBufferSize??ee.DEFAULT_INITIAL_BUFFER_SIZE,this.sortKeys=e?.sortKeys??!1,this.forceFloat32=e?.forceFloat32??!1,this.ignoreUndefined=e?.ignoreUndefined??!1,this.forceIntegerToFloat=e?.forceIntegerToFloat??!1,this.pos=0,this.view=new DataView(new ArrayBuffer(this.initialBufferSize)),this.bytes=new Uint8Array(this.view.buffer)}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,maxDepth:this.maxDepth,initialBufferSize:this.initialBufferSize,sortKeys:this.sortKeys,forceFloat32:this.forceFloat32,ignoreUndefined:this.ignoreUndefined,forceIntegerToFloat:this.forceIntegerToFloat})}reinitializeState(){this.pos=0}encodeSharedRef(e){if(this.entered)return this.clone().encodeSharedRef(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.subarray(0,this.pos)}finally{this.entered=!1}}encode(e){if(this.entered)return this.clone().encode(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.slice(0,this.pos)}finally{this.entered=!1}}doEncode(e,n){if(n>this.maxDepth)throw new Error(`Too deep objects in depth ${n}`);e==null?this.encodeNil():typeof e=="boolean"?this.encodeBoolean(e):typeof e=="number"?this.forceIntegerToFloat?this.encodeNumberAsFloat(e):this.encodeNumber(e):typeof e=="string"?this.encodeString(e):this.useBigInt64&&typeof e=="bigint"?this.encodeBigInt64(e):this.encodeObject(e,n)}ensureBufferSizeToWrite(e){let n=this.pos+e;this.view.byteLength=0?e<128?this.writeU8(e):e<256?(this.writeU8(204),this.writeU8(e)):e<65536?(this.writeU8(205),this.writeU16(e)):e<4294967296?(this.writeU8(206),this.writeU32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(207),this.writeU64(e)):e>=-32?this.writeU8(224|e+32):e>=-128?(this.writeU8(208),this.writeI8(e)):e>=-32768?(this.writeU8(209),this.writeI16(e)):e>=-2147483648?(this.writeU8(210),this.writeI32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(211),this.writeI64(e)):this.encodeNumberAsFloat(e)}encodeNumberAsFloat(e){this.forceFloat32?(this.writeU8(202),this.writeF32(e)):(this.writeU8(203),this.writeF64(e))}encodeBigInt64(e){e>=BigInt(0)?(this.writeU8(207),this.writeBigUint64(e)):(this.writeU8(211),this.writeBigInt64(e))}writeStringHeader(e){if(e<32)this.writeU8(160+e);else if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,ro.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,ro.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,vd.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,so.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,so.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};ee.Encoder=pr});var io=b(yr=>{"use strict";Object.defineProperty(yr,"__esModule",{value:!0});yr.encode=Td;var Ad=gr();function Td(t,e){return new Ad.Encoder(e).encodeSharedRef(t)}});var oo=b(mr=>{"use strict";Object.defineProperty(mr,"__esModule",{value:!0});mr.prettyByte=Dd;function Dd(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var co=b(sn=>{"use strict";Object.defineProperty(sn,"__esModule",{value:!0});sn.CachedKeyDecoder=void 0;var Md=Jt(),kd=16,Od=16,wr=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=kd,n=Od){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Md.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};sn.CachedKeyDecoder=wr});var cn=b(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.Decoder=void 0;var _r=oo(),Pd=rn(),De=en(),Nd=Jt(),ao=hr(),Ud=co(),le=Qt(),Sr="array",rt="map_key",lo="map_value",Rd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new le.DecodeError("The type of key must be string or number but "+typeof t)},br=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=Sr,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===Sr){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===lo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,xr=new DataView(new ArrayBuffer(0)),Ld=new Uint8Array(xr.buffer);try{xr.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var uo=new RangeError("Insufficient data"),jd=new Ud.CachedKeyDecoder,Ir=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=xr;bytes=Ld;headByte=nt;stack=new br;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Pd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??De.UINT32_MAX,this.maxBinLength=e?.maxBinLength??De.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??De.UINT32_MAX,this.maxMapLength=e?.maxMapLength??De.UINT32_MAX,this.maxExtLength=e?.maxExtLength??De.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:jd,this.mapKeyConverter=e?.mapKeyConverter??Rd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,ao.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,ao.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,_r.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new le.DecodeError(`Unrecognized type byte: ${(0,_r.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Sr)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new le.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=lo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new le.DecodeError(`Unrecognized array type byte: ${(0,_r.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new le.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new le.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new le.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new le.DecodeError(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw uo;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new le.DecodeError(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=(0,De.getUint64)(this.view,this.pos);return 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Run it directly, not through Claude or a pipe. +`,"utf8"),B.renameSync(r,t)}qo.exports={DEFAULTS:Lo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:jo,systemConfigPath:Co,projectConfigPath:Fo,credentialsPath:Bo,readConfigFile:Ur,loadConfig:Df,loadCredentials:Rr,writeCredentials:Tf,resolveApiKey:$o,resolveProvider:Mf,writeConfigFile:kf}});var ic=b((fp,sc)=>{"use strict";var Ie=require("fs"),xe=require("path"),Of=require("readline"),$=Lr(),jr=Mr(),{OpenAIProvider:Pf}=un(),zo="text-embedding-3-small",Vo=1536,Wo=1536;function Ko(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function Ho(){let t=Of.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. `),t.close(),process.exit(130)}),t}function ln(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Go(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` `||l==="\r")return c(),s.write(` `),n(o.trim());if(l===""){c(),s.write(` `),process.exit(130);return}if(l==="")return c(),s.write(` -`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Yo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Jo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Xo(){return{knowledge:{}}}function Zo(t){if(!be.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=be.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Qo(t){let e=Ie.join(t,"config.json"),n=Ie.join(t,"store.msp"),r=Ie.join(t,"metadata.json"),s=be.existsSync(t),i=be.existsSync(e),o=be.existsSync(n),c=be.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function dn({apiKey:t,model:e,dimensions:n}){let s=await new Pf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function fn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function ec(t){let e=$.systemConfigPath(),n=Zo(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Yo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Jo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Xo(){return{knowledge:{}}}function Zo(t){if(!Ie.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=Ie.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Qo(t){let e=xe.join(t,"config.json"),n=xe.join(t,"store.msp"),r=xe.join(t,"metadata.json"),s=Ie.existsSync(t),i=Ie.existsSync(e),o=Ie.existsSync(n),c=Ie.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function dn({apiKey:t,model:e,dimensions:n}){let s=await new Pf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function fn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function ec(t){let e=$.systemConfigPath(),n=Zo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} @@ -95,7 +95,7 @@ Validating via a test embed... `),!await Fe(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function nc(t){let e=Ie.resolve(process.cwd(),".workflows",".knowledge"),n=Ie.join(e,"config.json"),r=Ie.join(e,"store.msp"),s=Ie.join(e,"metadata.json"),i=Qo(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}}async function nc(t){let e=xe.resolve(process.cwd(),".workflows",".knowledge"),n=xe.join(e,"config.json"),r=xe.join(e,"store.msp"),s=xe.join(e,"metadata.json"),i=Qo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await Fe(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -103,7 +103,7 @@ Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);be.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Xo()),process.stdout.write(` config.json written +`);Ie.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Xo()),process.stdout.write(` config.json written `));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Wo;if(!i.storeExists||i.fullyInitialised){let u=await jr.createStore(a);await jr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) `)}return(!i.metadataExists||i.fullyInitialised)&&(jr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written `)),{created:!0,provider:c,dimensions:a}}async function rc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` @@ -112,7 +112,7 @@ Initial indexing `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function Uf(t,e,n){Ko();let r=Ie.resolve(process.cwd(),".workflows");be.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`)}}async function Uf(t,e,n){Ko();let r=xe.resolve(process.cwd(),".workflows");Ie.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. `),process.exit(1));let s=Ho(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== @@ -141,7 +141,7 @@ Options: --phase Filter by phase --topic Filter by topic --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function X(){return z.join(ne(),"metadata.json")}function le(){return z.join(ne(),".lock")}function Ff(t){return new Promise(e=>setTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;isetTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;izr(s,o,n,r),{maxAttempts:3,backoff:at});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await mc(n,r,Cf)}async function zr(t,e,n,r){let s=Bf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!I.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(I.readFileSync(i,"utf8")),c=z.resolve(t),a=I.readFileSync(c,"utf8"),u=lc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. 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Last error: ${o.error} +`)}async function yc(t,e){let n=X(),r=ne(),s=de();I.existsSync(r)||I.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;I.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});v.writeMetadata(n,i)})}async function hn(t){let e=X(),n=de();I.existsSync(e)&&await v.withLock(n,async()=>{if(!I.existsSync(e))return;let r=v.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),v.writeMetadata(e,r))})}async function mc(t,e,n){let r=X();if(!I.existsSync(r))return;let s=v.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=Cr){process.stderr.write(`Pending item ${o.file} exceeded ${Cr} attempts \u2014 evicting. Last error: ${o.error} `),await hn(o.file);continue}let c=z.resolve(o.file);if(!I.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. -`),await hn(o.file);continue}let a;try{a=qr(o.file)}catch{await hn(o.file);continue}try{await ut(()=>zr(o.file,a,t,e),{maxAttempts:3,backoff:at}),await hn(o.file)}catch(u){await yc(o.file,u.message)}}}var Fr=10;function De(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function wc(t,e){let n=X(),r=ne(),s=le();I.existsSync(r)||I.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;I.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=De(t),c=i.pending_removals.findIndex(u=>De(u)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let u=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(u.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});v.writeMetadata(n,i)})}async function ac(t){let e=X(),n=le();I.existsSync(e)&&await v.withLock(n,async()=>{if(!I.existsSync(e))return;let r=v.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=De(t);r.pending_removals=r.pending_removals.filter(i=>De(i)!==s),v.writeMetadata(e,r)})}async function _c(){let t=X();if(!I.existsSync(t))return;let e=v.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=Fr){process.stderr.write(`Pending removal for ${De(r)} exceeded ${Fr} attempts \u2014 evicting. -`),await ac(r);continue}try{await Sc({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${De(r)}. -`),await ac(r)}catch(s){try{await wc({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Sc(t){let e=re(),n=le();if(!I.existsSync(e))return 0;let r=0;return await v.withLock(n,async()=>{let s=await v.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await v.removeByFilter(s,i),await v.saveStore(s,e)}),r}var zf={high:4,medium:3,"low-medium":2,low:1};function Vf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Wf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}function Kf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;e&&i.work_unit===e&&(o+=.1);let c=zf[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Hf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. +`),await hn(o.file);continue}let a;try{a=qr(o.file)}catch{await hn(o.file);continue}try{await ut(()=>zr(o.file,a,t,e),{maxAttempts:3,backoff:at}),await hn(o.file)}catch(u){await yc(o.file,u.message)}}}var Fr=10;function Me(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function wc(t,e){let n=X(),r=ne(),s=de();I.existsSync(r)||I.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;I.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=Me(t),c=i.pending_removals.findIndex(u=>Me(u)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let u=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(u.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});v.writeMetadata(n,i)})}async function ac(t){let e=X(),n=de();I.existsSync(e)&&await v.withLock(n,async()=>{if(!I.existsSync(e))return;let r=v.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=Me(t);r.pending_removals=r.pending_removals.filter(i=>Me(i)!==s),v.writeMetadata(e,r)})}async function _c(){let t=X();if(!I.existsSync(t))return;let e=v.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=Fr){process.stderr.write(`Pending removal for ${Me(r)} exceeded ${Fr} attempts \u2014 evicting. +`),await ac(r);continue}try{await Sc({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${Me(r)}. +`),await ac(r)}catch(s){try{await wc({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Sc(t){let e=re(),n=de();if(!I.existsSync(e))return 0;let r=0;return await v.withLock(n,async()=>{let s=await v.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await v.removeByFilter(s,i),await v.saveStore(s,e)}),r}var zf={high:4,medium:3,"low-medium":2,low:1};function Vf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Wf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}function Kf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;e&&i.work_unit===e&&(o+=.1);let c=zf[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Hf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} @@ -174,10 +174,10 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `);return}process.stdout.write(`ready `)}async function Jf(){let t=ne(),e=re(),n=X(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!I.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await v.loadStore(e),i=await v.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,a[h.work_type]=(a[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,w]of Object.entries(o))r.push(` ${h}: ${w}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,w]of Object.entries(c))r.push(` ${h}: ${w}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[h,w]of Object.entries(a))r.push(` ${h}: ${w}`)}r.push("");let l=(I.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),I.existsSync(n)){let h=v.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let m of h.pending){let S=m.attempts||1;r.push(` ${m.file} \u2014 ${m.error} (attempt ${S}/${Cr}, ${m.failed_at})`)}}if(Array.isArray(h.pending_removals)&&h.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${h.pending_removals.length}`);for(let m of h.pending_removals)r.push(` ${De(m)} \u2014 ${m.error} (attempt ${m.attempts||1}/${Fr})`)}let w;try{w=Be.loadConfig()}catch{w=null}if(w){let m=Be.resolveProvider(w);h.provider&&m&&(h.provider!==w.provider||h.model!==m.model()||h.dimensions!==m.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(h.provider===null||h.provider===void 0)&&m&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),I.existsSync(z.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=Vr(),w=[];for(let m of h)await gc(s,m.workUnit,m.phase,m.topic)||w.push(m.file);if(w.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${w.length}`);for(let m of w)r.push(` ${m}`)}}catch(h){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${h.message} +`);return}let s=await v.loadStore(e),i=await v.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let h of i)o[h.work_unit]=(o[h.work_unit]||0)+1,c[h.phase]=(c[h.phase]||0)+1,a[h.work_type]=(a[h.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[h,w]of Object.entries(o))r.push(` ${h}: ${w}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[h,w]of Object.entries(c))r.push(` ${h}: ${w}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[h,w]of Object.entries(a))r.push(` ${h}: ${w}`)}r.push("");let l=(I.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),I.existsSync(n)){let h=v.readMetadata(n);if(r.push(`Last indexed: ${h.last_indexed||"unknown"}`),h.provider?(r.push(`Provider: ${h.provider} (model: ${h.model}, dimensions: ${h.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(h.pending)&&h.pending.length>0){r.push(""),r.push(`Pending items: ${h.pending.length}`);for(let m of h.pending){let S=m.attempts||1;r.push(` ${m.file} \u2014 ${m.error} (attempt ${S}/${Cr}, ${m.failed_at})`)}}if(Array.isArray(h.pending_removals)&&h.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${h.pending_removals.length}`);for(let m of h.pending_removals)r.push(` ${Me(m)} \u2014 ${m.error} (attempt ${m.attempts||1}/${Fr})`)}let w;try{w=Be.loadConfig()}catch{w=null}if(w){let m=Be.resolveProvider(w);h.provider&&m&&(h.provider!==w.provider||h.model!==m.model()||h.dimensions!==m.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(h.provider===null||h.provider===void 0)&&m&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let h of i)f.has(h.source_file)||(f.add(h.source_file),I.existsSync(z.resolve(h.source_file))||d.push(h.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let h of d)r.push(` ${h}`)}try{let h=Vr(),w=[];for(let m of h)await gc(s,m.workUnit,m.phase,m.topic)||w.push(m.file);if(w.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${w.length}`);for(let m of w)r.push(` ${m}`)}}catch(h){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${h.message} `)}let p=[];for(let h of Object.keys(o)){let w=bc(h);w&&w.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${h}`)}let g=i.filter(h=>h.phase==="specification"),y=new Set(g.map(h=>`${h.work_unit}.specification.${h.topic}`));for(let h of y)try{ct(["get",h,"status"]).trim()==="superseded"&&p.push(`Superseded spec still indexed: ${h}`)}catch{}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let h of p)r.push(` ${h}`)}process.stdout.write(r.join(` `)+` -`)}async function Xf(t,e,n,r){let s=re(),i=X(),o=le();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function Xf(t,e,n,r){let s=re(),i=X(),o=de();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. Type 'rebuild' to confirm: `),await Zf()!=="rebuild"&&(process.stderr.write(`Aborted. `),process.exit(1)),Vr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. @@ -193,7 +193,7 @@ Rename them back manually to recover. Rollback error: ${f.message} `),process.exit(1)),await _c();let n=re();if(!I.existsSync(n)){let s=uc(e);process.stdout.write(`Removed 0 chunks for ${s} `);return}let r=uc(e);try{let s=await Sc(e);process.stdout.write(`Removed ${s} chunks for ${r} `)}catch(s){await wc(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. -`),process.exit(1)}}function uc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function bc(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){pn(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return pn(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function eh(t,e,n){await _c();let r=re(),s=le(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`),process.exit(1)}}function uc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function bc(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){pn(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return pn(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function eh(t,e,n){await _c();let r=re(),s=de(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. `),process.exit(1));let o=i;if(!I.existsSync(r))return;let c=await v.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await v.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let h of l)d[h.work_unit]||(d[h.work_unit]=[]),d[h.work_unit].push(h);let f=[],p=[];for(let[h,w]of Object.entries(d)){let m=bc(h);if(!m||m.status!=="completed"||!m.completed_at)continue;let S=Vf(m.completed_at);if(!S||isNaN(S.getTime()))continue;let _=new Date(S);if(_.setMonth(_.getMonth()+o),_>a)continue;let x=w.filter(D=>D.phase!=="specification");if(x.length===0)continue;let T=new Set(x.map(D=>D.phase));f.push({workUnit:h,count:x.length,phases:T});for(let D of x)p.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((h,w)=>h+w.count,0);if(e.dryRun){let h=[];h.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let w of f)h.push(` \u2022 ${w.workUnit}: ${w.count} chunks (${Array.from(w.phases).join(", ")})`);process.stdout.write(h.join(` `)+` @@ -203,5 +203,5 @@ Rename them back manually to recover. Rollback error: ${f.message} `),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Be.loadConfig(),c=Be.resolveProvider(o)),r){case"index":await $f(s,i,o,c);break;case"query":await Gf(s,i,o,c);break;case"check":await Yf(s,i,o,c);break;case"status":await Jf();break;case"remove":await Qf(s,i,o,c);break;case"compact":await eh(s,i,o,c);break;case"rebuild":await Xf(s,i,o,c);break;case"setup":await dc.cmdSetup(gn,s,i);break;default:process.stderr.write(`Unknown command "${r}". ${cc} -`),process.exit(1)}}module.exports={parseArgs:fc,buildOptions:hc,deriveIdentity:qr,resolveProviderState:pc,withRetry:ut,main:Ic,cmdIndexBulk:gn,StubProvider:Rf,OpenAIProvider:Lf,store:v,chunker:lc,config:Be,setup:dc,knowledgeDir:ne,storePath:re,metadataPath:X,lockFilePath:le,INDEXED_PHASES:Br,KEYWORD_ONLY_DIMENSIONS:$r};require.main===module&&Ic().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` +`),process.exit(1)}}module.exports={parseArgs:fc,buildOptions:hc,deriveIdentity:qr,resolveProviderState:pc,withRetry:ut,main:Ic,cmdIndexBulk:gn,StubProvider:Rf,OpenAIProvider:Lf,store:v,chunker:lc,config:Be,setup:dc,knowledgeDir:ne,storePath:re,metadataPath:X,lockFilePath:de,INDEXED_PHASES:Br,KEYWORD_ONLY_DIMENSIONS:$r};require.main===module&&Ic().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 3fedd6eac..4d4fa6e50 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -479,6 +479,23 @@ async function indexSingleFile(sourceFile, identity, cfg, provider) { db = await store.loadStore(sp); } + // Re-validate provider state inside the lock. A concurrent rebuild or + // another indexer could have rewritten the store with different + // dimensions between our embedBatch call (outside the lock) and now + // (deferred-issue #1 TOCTOU). If dimensions diverged, our embeddings + // are the wrong width — abort, and withRetry at the CLI layer will + // re-enter with fresh state. + if (effectiveMode === 'full' && fs.existsSync(mp)) { + const reloadedMeta = store.readMetadata(mp); + const expectedDims = effectiveProvider.dimensions(); + if (reloadedMeta.provider && reloadedMeta.dimensions !== expectedDims) { + throw new Error( + 'Store schema changed during index (concurrent rebuild). ' + + `Embeddings produced for dims=${expectedDims}, store now has dims=${reloadedMeta.dimensions}. Retrying.` + ); + } + } + await store.removeByIdentity(db, { work_unit: identity.workUnit, phase: identity.phase, From 0bb4c1132a1ddfe66f095ccda4b976719ee077e5 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:32:06 +0100 Subject: [PATCH 13/78] fix(knowledge): openai embed empty-data guard, non-mutating sort, config null unset Three small correctness/style fixes bundled: - OpenAIProvider.embed() now throws a descriptive error if OpenAI returns an empty data array instead of a cryptic TypeError reading res.data[0].embedding. Unlikely in practice but costs nothing to guard. (deferred #13) - OpenAIProvider.embedBatch() no longer mutates res.data in place. Spread before sort. (deferred #12) - config.loadConfig() now treats explicit null in system/project config as an unset sentinel, letting a project config clear a system-level default. (deferred #14) Closes deferred-issues #12, #13, #14. --- skills/workflow-knowledge/scripts/knowledge.cjs | 4 ++-- src/knowledge/config.js | 12 +++++++++--- src/knowledge/providers/openai.js | 7 +++++-- 3 files changed, 16 insertions(+), 7 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 2ba4f742f..a7e499fe2 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -23,8 +23,8 @@ Read more at https://docs.orama.com/docs/orama-js/plugins/plugin-secure-proxy#pl `));a.trim()!==""&&i.push({heading:t.heading,headingLine:t.headingLine,text:a})}for(let c=0;c{"use strict";var ko="stub";function xf(t){let e=2166136261;for(let n=0;n>>0}function Ef(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var kr=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=xf(n)||1,s=Ef(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Po="text-embedding-3-small",No="https://api.openai.com/v1/embeddings",Pr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Po,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions});return(await this._fetch(n)).data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions});return(await this._fetch(r)).data.sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-u.index);for(let a=0;a{"use strict";var B=require("fs"),ot=require("path"),Ro=require("os"),{StubProvider:vf}=Or(),{OpenAIProvider:Af}=un(),Lo={similarity_threshold:.8,decay_months:6},Nr=["stub","openai"],jo={openai:"OPENAI_API_KEY"};function Co(){return ot.join(Ro.homedir(),".config","workflows","config.json")}function Fo(t){return ot.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Bo(){return ot.join(Ro.homedir(),".config","workflows","credentials.json")}function Ur(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function Rr(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function Tf(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(B.existsSync(t))try{r=Rr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ot.dirname(t);B.existsSync(o)||B.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=B.openSync(c,"w",384);try{B.writeSync(a,JSON.stringify(i,null,2)+` -`)}finally{B.closeSync(a)}B.chmodSync(c,384),B.renameSync(c,t);try{B.chmodSync(t,384)}catch{}}function $o(t,e){if(!t)return null;let n=jo[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Bo(),s;try{s=Rr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function Df(t){let e=t&&t.systemPath||Co(),n=t&&t.projectPath||Fo(),r=Ur(e),s=Ur(n),i=Object.assign({},Lo);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(i[o]=s[o]);return i._api_key=$o(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function Mf(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new vf(n!=null?{dimensions:n}:void 0)}if(!Nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new Af({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function kf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` +`).trim()===""}Do.exports={chunk:wf}});var Or=b((up,Oo)=>{"use strict";var ko="stub";function xf(t){let e=2166136261;for(let n=0;n>>0}function Ef(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var kr=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=xf(n)||1,s=Ef(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Po="text-embedding-3-small",No="https://api.openai.com/v1/embeddings",Pr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Po,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions});return[...(await this._fetch(r)).data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-u.index);for(let a=0;a{"use strict";var B=require("fs"),ot=require("path"),Ro=require("os"),{StubProvider:vf}=Or(),{OpenAIProvider:Af}=un(),Lo={similarity_threshold:.8,decay_months:6},Nr=["stub","openai"],jo={openai:"OPENAI_API_KEY"};function Co(){return ot.join(Ro.homedir(),".config","workflows","config.json")}function Fo(t){return ot.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Bo(){return ot.join(Ro.homedir(),".config","workflows","credentials.json")}function Ur(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function Rr(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function Tf(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(B.existsSync(t))try{r=Rr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ot.dirname(t);B.existsSync(o)||B.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=B.openSync(c,"w",384);try{B.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{B.closeSync(a)}B.chmodSync(c,384),B.renameSync(c,t);try{B.chmodSync(t,384)}catch{}}function $o(t,e){if(!t)return null;let n=jo[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Bo(),s;try{s=Rr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function Df(t){let e=t&&t.systemPath||Co(),n=t&&t.projectPath||Fo(),r=Ur(e),s=Ur(n),i=Object.assign({},Lo);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=$o(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function Mf(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new vf(n!=null?{dimensions:n}:void 0)}if(!Nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new Af({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function kf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` `,"utf8"),B.renameSync(r,t)}qo.exports={DEFAULTS:Lo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:jo,systemConfigPath:Co,projectConfigPath:Fo,credentialsPath:Bo,readConfigFile:Ur,loadConfig:Df,loadCredentials:Rr,writeCredentials:Tf,resolveApiKey:$o,resolveProvider:Mf,writeConfigFile:kf}});var ic=b((fp,sc)=>{"use strict";var Ie=require("fs"),xe=require("path"),Of=require("readline"),$=Lr(),jr=Mr(),{OpenAIProvider:Pf}=un(),zo="text-embedding-3-small",Vo=1536,Wo=1536;function Ko(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function Ho(){let t=Of.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. diff --git a/src/knowledge/config.js b/src/knowledge/config.js index 41670462e..60cff75e9 100644 --- a/src/knowledge/config.js +++ b/src/knowledge/config.js @@ -242,16 +242,22 @@ function loadConfig(paths) { const project = readConfigFile(projPath); // Merge: defaults <- system <- project. Shallow merge — all fields are - // scalars, no nested objects to worry about. + // scalars, no nested objects to worry about. `null` is treated as an + // explicit unset sentinel so a project config can clear a system default + // (e.g. "disable the system-configured provider for this project only"). const merged = Object.assign({}, DEFAULTS); if (system) { for (const key of Object.keys(system)) { - if (system[key] !== undefined) merged[key] = system[key]; + if (system[key] === undefined) continue; + if (system[key] === null) delete merged[key]; + else merged[key] = system[key]; } } if (project) { for (const key of Object.keys(project)) { - if (project[key] !== undefined) merged[key] = project[key]; + if (project[key] === undefined) continue; + if (project[key] === null) delete merged[key]; + else merged[key] = project[key]; } } diff --git a/src/knowledge/providers/openai.js b/src/knowledge/providers/openai.js index 4236bc17e..463007a8c 100644 --- a/src/knowledge/providers/openai.js +++ b/src/knowledge/providers/openai.js @@ -42,6 +42,9 @@ class OpenAIProvider { }); const res = await this._fetch(body); + if (!res.data || res.data.length === 0) { + throw new Error('OpenAI embed returned no data (empty response)'); + } return res.data[0].embedding; } @@ -61,7 +64,7 @@ class OpenAIProvider { const body = JSON.stringify({ model: this._model, input: texts, dimensions: this._dimensions }); const res = await this._fetch(body); // OpenAI returns data sorted by index — ensure correct order. - const sorted = res.data.sort((a, b) => a.index - b.index); + const sorted = [...res.data].sort((a, b) => a.index - b.index); return sorted.map((d) => d.embedding); } @@ -71,7 +74,7 @@ class OpenAIProvider { const slice = texts.slice(offset, offset + MAX_BATCH_SIZE); const body = JSON.stringify({ model: this._model, input: slice, dimensions: this._dimensions }); const res = await this._fetch(body); - const sorted = res.data.sort((a, b) => a.index - b.index); + const sorted = [...res.data].sort((a, b) => a.index - b.index); for (let i = 0; i < sorted.length; i++) { results[offset + i] = sorted[i].embedding; } From f9844768699936a7e22c8a9c9ac89871c855808f Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:33:53 +0100 Subject: [PATCH 14/78] fix(knowledge): don't retry programming errors, print stack on pending-queue fail, pause stdin after rebuild confirm Three targeted internal cleanups: - withRetry now lets TypeError / ReferenceError / SyntaxError through immediately instead of waiting 7s of backoff. A typo shouldn't burn retry budget before the real trace reaches the developer. (deferred #9) - cmdIndexBulk catch now writes err.stack to stderr after the summary line. Debug info is no longer lost just because the user was piping stdout. (deferred #10) - cmdRebuild's readStdinLine now pauses stdin after consuming the confirmation line. Irrelevant for the CLI but prevents a library consumer from keeping the event loop alive on an idle stream. (deferred #16) Closes deferred-issues #9, #10, #16. --- skills/workflow-knowledge/scripts/knowledge.cjs | 5 +++-- src/knowledge/index.js | 12 +++++++++++- 2 files changed, 14 insertions(+), 3 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index a7e499fe2..f63f923a2 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -141,7 +141,7 @@ Options: --phase Filter by phase --topic Filter by topic --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function X(){return z.join(ne(),"metadata.json")}function de(){return z.join(ne(),".lock")}function Ff(t){return new Promise(e=>setTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;isetTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;i0){let A=u.map(O=>O.content);_=await S.embedBatch(A)}let x=Date.now(),T=o.confidence||"medium",D=u.map((A,O)=>{let se=String(O+1).padStart(3,"0"),Z={id:`${e.workUnit}-${e.phase}-${e.topic}-${se}`,content:A.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:x};return _&&(Z.embedding=_[O]),Z});return await v.withLock(p,async()=>{if(h?g=await v.loadStore(d):I.existsSync(d)&&(g=await v.loadStore(d)),m==="full"&&I.existsSync(f)){let O=v.readMetadata(f),se=S.dimensions();if(O.provider&&O.dimensions!==se)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${se}, store now has dims=${O.dimensions}. Retrying.`)}await v.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let O of D)await v.insertDocument(g,O);await v.saveStore(g,d);let A=I.existsSync(f)?v.readMetadata(f):null;if(A)A.last_indexed=new Date().toISOString(),Array.isArray(A.pending)||(A.pending=[]),v.writeMetadata(f,A);else{let O={provider:S?n.provider:null,model:S?S.model():null,dimensions:S?S.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};v.writeMetadata(f,O)}}),D.length}function ct(t){let{execFileSync:e}=require("child_process");return e("node",[jf,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function qf(t){let e=t&&t.stderr?String(t.stderr):"";return/not found|does not exist/i.test(e)}function pn(t,e){if(qf(e))return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} `)}async function gc(t,e,n,r){return(await v.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function Vr(){let t=[],e;try{let n=ct(["list"]);e=JSON.parse(n)}catch(n){return pn("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Br){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let u=ct(["resolve",`${r}.${s}.${o}`]).trim();u&&I.existsSync(z.resolve(u))&&t.push({file:u,workUnit:r,phase:s,topic:o})}catch(a){pn(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function gn(t,e,n){let r=Vr(),s=ne(),i=re();I.existsSync(s)||I.mkdirSync(s,{recursive:!0});let o=null;I.existsSync(i)&&(o=await v.loadStore(i));let c=0,a=0,u=0;for(let l of r){if(o&&await gc(o,l.workUnit,l.phase,l.topic)){u++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await ut(()=>zr(l.file,d,e,n),{maxAttempts:3,backoff:at});process.stdout.write(`Indexing ${l.file}... ${f} chunks `),c++,a+=f,I.existsSync(i)&&(o=await v.loadStore(i))}catch(d){await yc(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. +`),d.stack&&process.stderr.write(d.stack+` `)}}await mc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${u} already indexed. `)}async function yc(t,e){let n=X(),r=ne(),s=de();I.existsSync(r)||I.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;I.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});v.writeMetadata(n,i)})}async function hn(t){let e=X(),n=de();I.existsSync(e)&&await v.withLock(n,async()=>{if(!I.existsSync(e))return;let r=v.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),v.writeMetadata(e,r))})}async function mc(t,e,n){let r=X();if(!I.existsSync(r))return;let s=v.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=Cr){process.stderr.write(`Pending item ${o.file} exceeded ${Cr} attempts \u2014 evicting. Last error: ${o.error} `),await hn(o.file);continue}let c=z.resolve(o.file);if(!I.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. @@ -188,7 +189,7 @@ Type 'rebuild' to confirm: `),await Zf()!=="rebuild"&&(process.stderr.write(`Abo ${u} ${l} Rename them back manually to recover. Rollback error: ${f.message} -`)}throw d}I.existsSync(u)&&I.unlinkSync(u),I.existsSync(l)&&I.unlinkSync(l)}function Zf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Qf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`)}throw d}I.existsSync(u)&&I.unlinkSync(u),I.existsSync(l)&&I.unlinkSync(l)}function Zf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Qf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase `),process.exit(1)),await _c();let n=re();if(!I.existsSync(n)){let s=uc(e);process.stdout.write(`Removed 0 chunks for ${s} `);return}let r=uc(e);try{let s=await Sc(e);process.stdout.write(`Removed ${s} chunks for ${r} diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 4d4fa6e50..59ec57403 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -168,6 +168,11 @@ async function withRetry(fn, opts) { try { return await fn(); } catch (err) { + // Don't retry programming errors — retrying a TypeError just burns + // 7s of backoff before the stack trace reaches the user. + if (err instanceof TypeError || err instanceof ReferenceError || err instanceof SyntaxError) { + throw err; + } lastErr = err; if (attempt < maxAttempts - 1) { const delay = backoff[attempt] || backoff[backoff.length - 1]; @@ -680,11 +685,13 @@ async function cmdIndexBulk(options, cfg, provider) { db = await store.loadStore(sp); } } catch (err) { - // All retries exhausted — add to pending queue. + // All retries exhausted — add to pending queue. Write the stack to + // stderr so debugging does not depend on users capturing it later. await addToPendingQueue(item.file, err.message); process.stderr.write( `Failed to index ${item.file} after 3 attempts: ${err.message}. Added to pending queue.\n` ); + if (err.stack) process.stderr.write(err.stack + '\n'); } } @@ -1531,6 +1538,9 @@ function readStdinLine() { if (/\r|\n/.test(buf)) { process.stdin.removeListener('data', onData); process.stdin.removeListener('end', onEnd); + // Pause to release the reference — otherwise an unused stdin keeps + // the event loop alive if the CLI is used as a library. + process.stdin.pause(); finish(); } }; From 33303da1074a551661ef99cb9016e5e467c06f9d Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:35:38 +0100 Subject: [PATCH 15/78] perf(knowledge): load manifests once in status; hybrid search falls back to text MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Two retrieval-layer fixes: - cmdStatus used to shell out to 'manifest get' per spec topic for the superseded-spec consistency check — N processes for N specs, ~5s on 50-spec repos. Now loads the full manifest tree once via 'manifest list' and resolves topic statuses in memory. Same behaviour, O(1) processes. (deferred #6) - searchHybrid previously returned zero hits when Orama's similarity post-filter masked a query with no strong vector matches, even when BM25 would have found good text matches. Fall back to a fulltext search before returning empty. Search results can only improve. (deferred #15) Closes deferred-issues #6, #15. --- .../workflow-knowledge/scripts/knowledge.cjs | 120 +++++++++--------- src/knowledge/index.js | 36 ++++-- src/knowledge/store.js | 10 ++ 3 files changed, 94 insertions(+), 72 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index f63f923a2..5cc21e5c7 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,38 +1,38 @@ -"use strict";var b=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var dt=b(K=>{"use strict";Object.defineProperty(K,"__esModule",{value:!0});K.SUPPORTED_LANGUAGES=K.SPLITTERS=K.STEMMERS=void 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t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,maxDepth:this.maxDepth,initialBufferSize:this.initialBufferSize,sortKeys:this.sortKeys,forceFloat32:this.forceFloat32,ignoreUndefined:this.ignoreUndefined,forceIntegerToFloat:this.forceIntegerToFloat})}reinitializeState(){this.pos=0}encodeSharedRef(e){if(this.entered)return this.clone().encodeSharedRef(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.subarray(0,this.pos)}finally{this.entered=!1}}encode(e){if(this.entered)return this.clone().encode(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.slice(0,this.pos)}finally{this.entered=!1}}doEncode(e,n){if(n>this.maxDepth)throw new Error(`Too deep objects in depth ${n}`);e==null?this.encodeNil():typeof e=="boolean"?this.encodeBoolean(e):typeof e=="number"?this.forceIntegerToFloat?this.encodeNumberAsFloat(e):this.encodeNumber(e):typeof e=="string"?this.encodeString(e):this.useBigInt64&&typeof e=="bigint"?this.encodeBigInt64(e):this.encodeObject(e,n)}ensureBufferSizeToWrite(e){let n=this.pos+e;this.view.byteLength=0?e<128?this.writeU8(e):e<256?(this.writeU8(204),this.writeU8(e)):e<65536?(this.writeU8(205),this.writeU16(e)):e<4294967296?(this.writeU8(206),this.writeU32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(207),this.writeU64(e)):e>=-32?this.writeU8(224|e+32):e>=-128?(this.writeU8(208),this.writeI8(e)):e>=-32768?(this.writeU8(209),this.writeI16(e)):e>=-2147483648?(this.writeU8(210),this.writeI32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(211),this.writeI64(e)):this.encodeNumberAsFloat(e)}encodeNumberAsFloat(e){this.forceFloat32?(this.writeU8(202),this.writeF32(e)):(this.writeU8(203),this.writeF64(e))}encodeBigInt64(e){e>=BigInt(0)?(this.writeU8(207),this.writeBigUint64(e)):(this.writeU8(211),this.writeBigInt64(e))}writeStringHeader(e){if(e<32)this.writeU8(160+e);else if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,ro.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,ro.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,vd.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,so.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,so.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};ee.Encoder=pr});var io=b(yr=>{"use strict";Object.defineProperty(yr,"__esModule",{value:!0});yr.encode=Td;var Ad=gr();function Td(t,e){return new Ad.Encoder(e).encodeSharedRef(t)}});var oo=b(mr=>{"use strict";Object.defineProperty(mr,"__esModule",{value:!0});mr.prettyByte=Dd;function Dd(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var co=b(sn=>{"use strict";Object.defineProperty(sn,"__esModule",{value:!0});sn.CachedKeyDecoder=void 0;var Md=Jt(),kd=16,Od=16,wr=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=kd,n=Od){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Md.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};sn.CachedKeyDecoder=wr});var cn=b(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.Decoder=void 0;var _r=oo(),Pd=rn(),De=en(),Nd=Jt(),ao=hr(),Ud=co(),le=Qt(),Sr="array",rt="map_key",lo="map_value",Rd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new le.DecodeError("The type of key must be string or number but "+typeof t)},br=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=Sr,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===Sr){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===lo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,xr=new DataView(new ArrayBuffer(0)),Ld=new Uint8Array(xr.buffer);try{xr.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var uo=new RangeError("Insufficient data"),jd=new Ud.CachedKeyDecoder,Ir=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=xr;bytes=Ld;headByte=nt;stack=new br;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Pd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??De.UINT32_MAX,this.maxBinLength=e?.maxBinLength??De.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??De.UINT32_MAX,this.maxMapLength=e?.maxMapLength??De.UINT32_MAX,this.maxExtLength=e?.maxExtLength??De.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:jd,this.mapKeyConverter=e?.mapKeyConverter??Rd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,ao.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,ao.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,_r.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new le.DecodeError(`Unrecognized type byte: ${(0,_r.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Sr)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new le.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=lo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new le.DecodeError(`Unrecognized array type byte: ${(0,_r.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new le.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new le.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new le.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new le.DecodeError(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw uo;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new le.DecodeError(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=(0,De.getUint64)(this.view,this.pos);return this.pos+=8,e}readI64(){let e=(0,De.getInt64)(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}};on.Decoder=Ir});var ho=b(an=>{"use strict";Object.defineProperty(an,"__esModule",{value:!0});an.decode=Cd;an.decodeMulti=Fd;var fo=cn();function Cd(t,e){return new fo.Decoder(e).decode(t)}function Fd(t,e){return new fo.Decoder(e).decodeMulti(t)}});var yo=b(st=>{"use strict";Object.defineProperty(st,"__esModule",{value:!0});st.isAsyncIterable=po;st.asyncIterableFromStream=go;st.ensureAsyncIterable=Bd;function po(t){return t[Symbol.asyncIterator]!=null}async function*go(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Bd(t){return 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t{extensionCodec;context;useBigInt64;maxDepth;initialBufferSize;sortKeys;forceFloat32;ignoreUndefined;forceIntegerToFloat;pos;view;bytes;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??xd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.maxDepth=e?.maxDepth??te.DEFAULT_MAX_DEPTH,this.initialBufferSize=e?.initialBufferSize??te.DEFAULT_INITIAL_BUFFER_SIZE,this.sortKeys=e?.sortKeys??!1,this.forceFloat32=e?.forceFloat32??!1,this.ignoreUndefined=e?.ignoreUndefined??!1,this.forceIntegerToFloat=e?.forceIntegerToFloat??!1,this.pos=0,this.view=new DataView(new ArrayBuffer(this.initialBufferSize)),this.bytes=new Uint8Array(this.view.buffer)}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,maxDepth:this.maxDepth,initialBufferSize:this.initialBufferSize,sortKeys:this.sortKeys,forceFloat32:this.forceFloat32,ignoreUndefined:this.ignoreUndefined,forceIntegerToFloat:this.forceIntegerToFloat})}reinitializeState(){this.pos=0}encodeSharedRef(e){if(this.entered)return this.clone().encodeSharedRef(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.subarray(0,this.pos)}finally{this.entered=!1}}encode(e){if(this.entered)return this.clone().encode(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.slice(0,this.pos)}finally{this.entered=!1}}doEncode(e,n){if(n>this.maxDepth)throw new Error(`Too deep objects in depth ${n}`);e==null?this.encodeNil():typeof e=="boolean"?this.encodeBoolean(e):typeof e=="number"?this.forceIntegerToFloat?this.encodeNumberAsFloat(e):this.encodeNumber(e):typeof e=="string"?this.encodeString(e):this.useBigInt64&&typeof e=="bigint"?this.encodeBigInt64(e):this.encodeObject(e,n)}ensureBufferSizeToWrite(e){let n=this.pos+e;this.view.byteLength=0?e<128?this.writeU8(e):e<256?(this.writeU8(204),this.writeU8(e)):e<65536?(this.writeU8(205),this.writeU16(e)):e<4294967296?(this.writeU8(206),this.writeU32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(207),this.writeU64(e)):e>=-32?this.writeU8(224|e+32):e>=-128?(this.writeU8(208),this.writeI8(e)):e>=-32768?(this.writeU8(209),this.writeI16(e)):e>=-2147483648?(this.writeU8(210),this.writeI32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(211),this.writeI64(e)):this.encodeNumberAsFloat(e)}encodeNumberAsFloat(e){this.forceFloat32?(this.writeU8(202),this.writeF32(e)):(this.writeU8(203),this.writeF64(e))}encodeBigInt64(e){e>=BigInt(0)?(this.writeU8(207),this.writeBigUint64(e)):(this.writeU8(211),this.writeBigInt64(e))}writeStringHeader(e){if(e<32)this.writeU8(160+e);else if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,ro.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,ro.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,Ed.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,so.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,so.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};te.Encoder=gr});var io=I(mr=>{"use strict";Object.defineProperty(mr,"__esModule",{value:!0});mr.encode=Ad;var vd=yr();function Ad(t,e){return new vd.Encoder(e).encodeSharedRef(t)}});var oo=I(wr=>{"use strict";Object.defineProperty(wr,"__esModule",{value:!0});wr.prettyByte=Td;function Td(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var co=I(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.CachedKeyDecoder=void 0;var Dd=Xt(),Md=16,kd=16,_r=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=Md,n=kd){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,Dd.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};on.CachedKeyDecoder=_r});var an=I(cn=>{"use strict";Object.defineProperty(cn,"__esModule",{value:!0});cn.Decoder=void 0;var Sr=oo(),Od=sn(),De=tn(),Pd=Xt(),ao=pr(),Nd=co(),le=en(),br="array",rt="map_key",lo="map_value",Ud=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new le.DecodeError("The type of key must be string or number but "+typeof t)},Ir=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=br,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===br){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===lo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,Er=new DataView(new ArrayBuffer(0)),Rd=new Uint8Array(Er.buffer);try{Er.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var uo=new RangeError("Insufficient data"),Ld=new Nd.CachedKeyDecoder,xr=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Er;bytes=Rd;headByte=nt;stack=new Ir;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Od.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??De.UINT32_MAX,this.maxBinLength=e?.maxBinLength??De.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??De.UINT32_MAX,this.maxMapLength=e?.maxMapLength??De.UINT32_MAX,this.maxExtLength=e?.maxExtLength??De.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Ld,this.mapKeyConverter=e?.mapKeyConverter??Ud}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,ao.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,ao.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,Sr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new le.DecodeError(`Unrecognized type byte: ${(0,Sr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===br)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new le.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=lo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new le.DecodeError(`Unrecognized array type byte: ${(0,Sr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new le.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new le.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new le.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new le.DecodeError(`Max length exceeded: bin length (${e}) 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Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new Af({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function kf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` -`,"utf8"),B.renameSync(r,t)}qo.exports={DEFAULTS:Lo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:jo,systemConfigPath:Co,projectConfigPath:Fo,credentialsPath:Bo,readConfigFile:Ur,loadConfig:Df,loadCredentials:Rr,writeCredentials:Tf,resolveApiKey:$o,resolveProvider:Mf,writeConfigFile:kf}});var ic=b((fp,sc)=>{"use strict";var Ie=require("fs"),xe=require("path"),Of=require("readline"),$=Lr(),jr=Mr(),{OpenAIProvider:Pf}=un(),zo="text-embedding-3-small",Vo=1536,Wo=1536;function Ko(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. -`),process.exit(1))}function Ho(){let t=Of.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` +`).trim()===""}Do.exports={chunk:mf}});var Or=I((up,Oo)=>{"use strict";var ko="stub";function If(t){let e=2166136261;for(let n=0;n>>0}function xf(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var kr=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=If(n)||1,s=xf(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Po="text-embedding-3-small",No="https://api.openai.com/v1/embeddings",Pr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Po,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions});return[...(await this._fetch(r)).data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-u.index);for(let a=0;a{"use strict";var B=require("fs"),ot=require("path"),Ro=require("os"),{StubProvider:Ef}=Or(),{OpenAIProvider:vf}=dn(),Lo={similarity_threshold:.8,decay_months:6},Nr=["stub","openai"],jo={openai:"OPENAI_API_KEY"};function Co(){return ot.join(Ro.homedir(),".config","workflows","config.json")}function Fo(t){return ot.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Bo(){return ot.join(Ro.homedir(),".config","workflows","credentials.json")}function Ur(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function Rr(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function Af(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(B.existsSync(t))try{r=Rr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ot.dirname(t);B.existsSync(o)||B.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=B.openSync(c,"w",384);try{B.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{B.closeSync(a)}B.chmodSync(c,384),B.renameSync(c,t);try{B.chmodSync(t,384)}catch{}}function $o(t,e){if(!t)return null;let n=jo[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Bo(),s;try{s=Rr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function Tf(t){let e=t&&t.systemPath||Co(),n=t&&t.projectPath||Fo(),r=Ur(e),s=Ur(n),i=Object.assign({},Lo);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=$o(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function Df(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Ef(n!=null?{dimensions:n}:void 0)}if(!Nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new vf({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function Mf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),B.renameSync(r,t)}qo.exports={DEFAULTS:Lo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:jo,systemConfigPath:Co,projectConfigPath:Fo,credentialsPath:Bo,readConfigFile:Ur,loadConfig:Tf,loadCredentials:Rr,writeCredentials:Af,resolveApiKey:$o,resolveProvider:Df,writeConfigFile:Mf}});var ic=I((fp,sc)=>{"use strict";var Ie=require("fs"),xe=require("path"),kf=require("readline"),$=Lr(),jr=Mr(),{OpenAIProvider:Of}=dn(),zo="text-embedding-3-small",Vo=1536,Wo=1536;function Ko(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function Ho(){let t=kf.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function ln(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Go(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` +`),t.close(),process.exit(130)}),t}function fn(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Go(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` `||l==="\r")return c(),s.write(` `),n(o.trim());if(l===""){c(),s.write(` `),process.exit(130);return}if(l==="")return c(),s.write(` -`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Yo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Jo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Xo(){return{knowledge:{}}}function Zo(t){if(!Ie.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=Ie.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Qo(t){let e=xe.join(t,"config.json"),n=xe.join(t,"store.msp"),r=xe.join(t,"metadata.json"),s=Ie.existsSync(t),i=Ie.existsSync(e),o=Ie.existsSync(n),c=Ie.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function dn({apiKey:t,model:e,dimensions:n}){let s=await new Pf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function fn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function ec(t){let e=$.systemConfigPath(),n=Zo(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Yo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Jo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Xo(){return{knowledge:{}}}function Zo(t){if(!Ie.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=Ie.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Qo(t){let e=xe.join(t,"config.json"),n=xe.join(t,"store.msp"),r=xe.join(t,"metadata.json"),s=Ie.existsSync(t),i=Ie.existsSync(e),o=Ie.existsSync(n),c=Ie.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function hn({apiKey:t,model:e,dimensions:n}){let s=await new Of({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function pn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function ec(t){let e=$.systemConfigPath(),n=Zo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} @@ -50,26 +50,26 @@ Embedding provider: `),process.stdout.write(` openai \u2014 OpenAI embeddings API (requires an API key) `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) -`);let s;for(;s=(await ln(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". +`);let s;for(;s=(await fn(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". `);if(s==="skip")return $.writeConfigFile(e,Jo()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await ln(t,"Embedding model",zo),o=await ln(t,"Vector dimensions",String(Vo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await fn(t,"Embedding model",zo),o=await fn(t,"Vector dimensions",String(Vo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. `),process.exit(1)),$.writeConfigFile(e,Yo({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} `);let a=$.PROVIDER_ENV_VARS.openai;return await tc(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function tc(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... -`);try{await dn({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. -`)}catch(c){let{message:a,hint:u}=fn(c);process.stdout.write(`${a} +`);try{await hn({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. +`)}catch(c){let{message:a,hint:u}=pn(c);process.stdout.write(`${a} ${u} `),process.stdout.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. Setup will continue \u2014 indexing will queue until the key is corrected. `)}return}let o=$.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` Found an existing API key in ${s} \u2014 validating via a test embed... -`);try{await dn({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. -`);return}catch(c){let{message:a,hint:u}=fn(c);if(process.stdout.write(`${a} +`);try{await hn({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. +`);return}catch(c){let{message:a,hint:u}=pn(c);if(process.stdout.write(`${a} ${u} `),!await Fe(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await Nf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Nf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await Pf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Pf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -89,7 +89,7 @@ stored key, so you can swap it without editing the file. `);continue}process.stdout.write(` Validating via a test embed... -`);try{await dn({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=fn(o);if(process.stdout.write(`${c} +`);try{await hn({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=pn(o);if(process.stdout.write(`${c} ${a} `),!await Fe(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. @@ -112,7 +112,7 @@ Initial indexing `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function Uf(t,e,n){Ko();let r=xe.resolve(process.cwd(),".workflows");Ie.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`)}}async function Nf(t,e,n){Ko();let r=xe.resolve(process.cwd(),".workflows");Ie.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. `),process.exit(1));let s=Ho(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== @@ -120,10 +120,10 @@ Knowledge base setup Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}sc.exports={cmdSetup:Uf,requireTTY:Ko,createPrompter:Ho,ask:ln,askYesNo:Fe,askSecret:Go,buildSystemConfigOpenAI:Yo,buildSystemConfigStub:Jo,buildProjectConfigEmpty:Xo,detectSystemConfig:Zo,detectProjectInit:Qo,validateApiKey:dn,describeValidationError:fn,ensureOpenAIKey:tc,runSystemConfigStep:ec,runProjectInitStep:nc,runInitialIndexStep:rc,KEYWORD_ONLY_DIMENSIONS:Wo,OPENAI_DEFAULT_MODEL:zo,OPENAI_DEFAULT_DIMENSIONS:Vo}});var I=require("fs"),z=require("path"),v=Mr(),lc=Mo(),{StubProvider:Rf}=Or(),{OpenAIProvider:Lf}=un(),Be=Lr(),dc=ic(),Br=["research","discussion","investigation","specification"],jf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(I.existsSync(t))return t;if(I.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}sc.exports={cmdSetup:Nf,requireTTY:Ko,createPrompter:Ho,ask:fn,askYesNo:Fe,askSecret:Go,buildSystemConfigOpenAI:Yo,buildSystemConfigStub:Jo,buildProjectConfigEmpty:Xo,detectSystemConfig:Zo,detectProjectInit:Qo,validateApiKey:hn,describeValidationError:pn,ensureOpenAIKey:tc,runSystemConfigStep:ec,runProjectInitStep:nc,runInitialIndexStep:rc,KEYWORD_ONLY_DIMENSIONS:Wo,OPENAI_DEFAULT_MODEL:zo,OPENAI_DEFAULT_DIMENSIONS:Vo}});var x=require("fs"),z=require("path"),v=Mr(),lc=Mo(),{StubProvider:Uf}=Or(),{OpenAIProvider:Rf}=dn(),Be=Lr(),dc=ic(),Br=["research","discussion","investigation","specification"],Lf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(x.existsSync(t))return t;if(x.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),at=[1e3,2e3,4e3],Cf=5,Cr=10,$r=1536,oc=!1;function fc(t){let e=[],n={},r=0;for(;r [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),ut=[1e3,2e3,4e3],jf=5,Cr=10,$r=1536,oc=!1;function fc(t){let e=[],n={},r=0;for(;r [options] Commands: index Index a file or all pending artifacts @@ -141,68 +141,68 @@ Options: --phase Filter by phase --topic Filter by topic --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function X(){return z.join(ne(),"metadata.json")}function de(){return z.join(ne(),".lock")}function Ff(t){return new Promise(e=>setTimeout(e,t))}async function ut(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||at,s;for(let i=0;isetTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;izr(s,o,n,r),{maxAttempts:3,backoff:at});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await mc(n,r,Cf)}async function zr(t,e,n,r){let s=Bf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!I.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(I.readFileSync(i,"utf8")),c=z.resolve(t),a=I.readFileSync(c,"utf8"),u=lc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=X(),p=de();I.existsSync(l)||I.mkdirSync(l,{recursive:!0});let g,y,h=I.existsSync(d),w=I.existsSync(f);h&&(g=await v.loadStore(d)),w&&(y=v.readMetadata(f),Array.isArray(y.pending)||(y.pending=[]));let m,S;if(y){let A=pc(y,n,r);m=A.mode,S=A.provider}else r?(m="full",S=r):(m="keyword-only",S=null);if(!g){let A=S?S.dimensions():n.dimensions||$r;g=await v.createStore(A)}let _=null;if(m==="full"&&S&&u.length>0){let A=u.map(O=>O.content);_=await S.embedBatch(A)}let x=Date.now(),T=o.confidence||"medium",D=u.map((A,O)=>{let se=String(O+1).padStart(3,"0"),Z={id:`${e.workUnit}-${e.phase}-${e.topic}-${se}`,content:A.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:x};return _&&(Z.embedding=_[O]),Z});return await v.withLock(p,async()=>{if(h?g=await v.loadStore(d):I.existsSync(d)&&(g=await v.loadStore(d)),m==="full"&&I.existsSync(f)){let O=v.readMetadata(f),se=S.dimensions();if(O.provider&&O.dimensions!==se)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${se}, store now has dims=${O.dimensions}. Retrying.`)}await v.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let O of D)await v.insertDocument(g,O);await v.saveStore(g,d);let A=I.existsSync(f)?v.readMetadata(f):null;if(A)A.last_indexed=new Date().toISOString(),Array.isArray(A.pending)||(A.pending=[]),v.writeMetadata(f,A);else{let O={provider:S?n.provider:null,model:S?S.model():null,dimensions:S?S.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};v.writeMetadata(f,O)}}),D.length}function ct(t){let{execFileSync:e}=require("child_process");return e("node",[jf,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function qf(t){let e=t&&t.stderr?String(t.stderr):"";return/not found|does not exist/i.test(e)}function pn(t,e){if(qf(e))return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} -`)}async function gc(t,e,n,r){return(await v.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function Vr(){let t=[],e;try{let n=ct(["list"]);e=JSON.parse(n)}catch(n){return pn("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Br){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let u=ct(["resolve",`${r}.${s}.${o}`]).trim();u&&I.existsSync(z.resolve(u))&&t.push({file:u,workUnit:r,phase:s,topic:o})}catch(a){pn(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function gn(t,e,n){let r=Vr(),s=ne(),i=re();I.existsSync(s)||I.mkdirSync(s,{recursive:!0});let o=null;I.existsSync(i)&&(o=await v.loadStore(i));let c=0,a=0,u=0;for(let l of r){if(o&&await gc(o,l.workUnit,l.phase,l.topic)){u++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await ut(()=>zr(l.file,d,e,n),{maxAttempts:3,backoff:at});process.stdout.write(`Indexing ${l.file}... ${f} chunks -`),c++,a+=f,I.existsSync(i)&&(o=await v.loadStore(i))}catch(d){await yc(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. + Current config has no provider configured.`)}async function Bf(t,e,n,r){if(t.length===0)return yn(e,n,r);let s=t[0],i=z.resolve(s);x.existsSync(i)||(process.stderr.write(`File not found: ${i} +`),process.exit(1));let o=qr(s),c=await lt(()=>zr(s,o,n,r),{maxAttempts:3,backoff:ut});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await mc(n,r,jf)}async function zr(t,e,n,r){let s=Ff(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!x.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(x.readFileSync(i,"utf8")),c=z.resolve(t),a=x.readFileSync(c,"utf8"),u=lc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. 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Added to pending queue. `),d.stack&&process.stderr.write(d.stack+` `)}}await mc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${u} already indexed. -`)}async function yc(t,e){let n=X(),r=ne(),s=de();I.existsSync(r)||I.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;I.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});v.writeMetadata(n,i)})}async function hn(t){let e=X(),n=de();I.existsSync(e)&&await v.withLock(n,async()=>{if(!I.existsSync(e))return;let r=v.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),v.writeMetadata(e,r))})}async function mc(t,e,n){let r=X();if(!I.existsSync(r))return;let s=v.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=Cr){process.stderr.write(`Pending item ${o.file} exceeded ${Cr} attempts \u2014 evicting. 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Previous index is at: ${u} ${l} Rename them back manually to recover. Rollback error: ${f.message} -`)}throw d}I.existsSync(u)&&I.unlinkSync(u),I.existsSync(l)&&I.unlinkSync(l)}function Zf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Qf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`)}throw d}x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l)}function Xf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Zf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1)),await _c();let n=re();if(!I.existsSync(n)){let s=uc(e);process.stdout.write(`Removed 0 chunks for ${s} +`),process.exit(1)),await _c();let n=re();if(!x.existsSync(n)){let s=uc(e);process.stdout.write(`Removed 0 chunks for ${s} `);return}let r=uc(e);try{let s=await Sc(e);process.stdout.write(`Removed ${s} chunks for ${r} `)}catch(s){await wc(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. -`),process.exit(1)}}function uc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function bc(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){pn(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return pn(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function eh(t,e,n){await _c();let r=re(),s=de(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`),process.exit(1)}}function uc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Qf(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){at(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return at(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function eh(t,e,n){await _c();let r=re(),s=de(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!I.existsSync(r))return;let c=await v.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await v.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let h of l)d[h.work_unit]||(d[h.work_unit]=[]),d[h.work_unit].push(h);let f=[],p=[];for(let[h,w]of Object.entries(d)){let m=bc(h);if(!m||m.status!=="completed"||!m.completed_at)continue;let S=Vf(m.completed_at);if(!S||isNaN(S.getTime()))continue;let _=new Date(S);if(_.setMonth(_.getMonth()+o),_>a)continue;let x=w.filter(D=>D.phase!=="specification");if(x.length===0)continue;let T=new Set(x.map(D=>D.phase));f.push({workUnit:h,count:x.length,phases:T});for(let D of x)p.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((h,w)=>h+w.count,0);if(e.dryRun){let h=[];h.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let w of f)h.push(` \u2022 ${w.workUnit}: ${w.count} chunks (${Array.from(w.phases).join(", ")})`);process.stdout.write(h.join(` +`),process.exit(1));let o=i;if(!x.existsSync(r))return;let c=await v.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await v.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let y of l)d[y.work_unit]||(d[y.work_unit]=[]),d[y.work_unit].push(y);let f=[],h=[];for(let[y,S]of Object.entries(d)){let p=Qf(y);if(!p||p.status!=="completed"||!p.completed_at)continue;let _=zf(p.completed_at);if(!_||isNaN(_.getTime()))continue;let w=new Date(_);if(w.setMonth(w.getMonth()+o),w>a)continue;let b=S.filter(D=>D.phase!=="specification");if(b.length===0)continue;let A=new Set(b.map(D=>D.phase));f.push({workUnit:y,count:b.length,phases:A});for(let D of b)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((y,S)=>y+S.count,0);if(e.dryRun){let y=[];y.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let S of f)y.push(` \u2022 ${S.workUnit}: ${S.count} chunks (${Array.from(S.phases).join(", ")})`);process.stdout.write(y.join(` `)+` -`);return}await v.withLock(s,async()=>{let h=await v.loadStore(r),w=new Set;for(let m of p){let S=`${m.work_unit}|${m.phase}|${m.topic}`;w.has(S)||(w.add(S),await v.removeByIdentity(h,m))}await v.saveStore(h,r)});let y=[];y.push(`Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let h of f)y.push(` \u2022 ${h.workUnit}: ${h.count} chunks (${Array.from(h.phases).join(", ")})`);process.stdout.write(y.join(` +`);return}await v.withLock(s,async()=>{let y=await v.loadStore(r),S=new Set;for(let p of h){let _=`${p.work_unit}|${p.phase}|${p.topic}`;S.has(_)||(S.add(_),await v.removeByIdentity(y,p))}await v.saveStore(y,r)});let m=[];m.push(`Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let y of f)m.push(` \u2022 ${y.workUnit}: ${y.count} chunks (${Array.from(y.phases).join(", ")})`);process.stdout.write(m.join(` `)+` -`)}async function Ic(){let t=process.argv.slice(2),{positional:e,flags:n}=fc(t),r=e[0],s=e.slice(1),i=hc(n);r||(process.stderr.write(cc+` -`),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Be.loadConfig(),c=Be.resolveProvider(o)),r){case"index":await $f(s,i,o,c);break;case"query":await Gf(s,i,o,c);break;case"check":await Yf(s,i,o,c);break;case"status":await Jf();break;case"remove":await Qf(s,i,o,c);break;case"compact":await eh(s,i,o,c);break;case"rebuild":await Xf(s,i,o,c);break;case"setup":await dc.cmdSetup(gn,s,i);break;default:process.stderr.write(`Unknown command "${r}". +`)}async function bc(){let t=process.argv.slice(2),{positional:e,flags:n}=fc(t),r=e[0],s=e.slice(1),i=hc(n);r||(process.stderr.write(cc+` +`),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Be.loadConfig(),c=Be.resolveProvider(o)),r){case"index":await Bf(s,i,o,c);break;case"query":await Hf(s,i,o,c);break;case"check":await Gf(s,i,o,c);break;case"status":await Yf();break;case"remove":await Zf(s,i,o,c);break;case"compact":await eh(s,i,o,c);break;case"rebuild":await Jf(s,i,o,c);break;case"setup":await dc.cmdSetup(yn,s,i);break;default:process.stderr.write(`Unknown command "${r}". ${cc} -`),process.exit(1)}}module.exports={parseArgs:fc,buildOptions:hc,deriveIdentity:qr,resolveProviderState:pc,withRetry:ut,main:Ic,cmdIndexBulk:gn,StubProvider:Rf,OpenAIProvider:Lf,store:v,chunker:lc,config:Be,setup:dc,knowledgeDir:ne,storePath:re,metadataPath:X,lockFilePath:de,INDEXED_PHASES:Br,KEYWORD_ONLY_DIMENSIONS:$r};require.main===module&&Ic().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` +`),process.exit(1)}}module.exports={parseArgs:fc,buildOptions:hc,deriveIdentity:qr,resolveProviderState:pc,withRetry:lt,main:bc,cmdIndexBulk:yn,StubProvider:Uf,OpenAIProvider:Rf,store:v,chunker:lc,config:Be,setup:dc,knowledgeDir:ne,storePath:re,metadataPath:Z,lockFilePath:de,INDEXED_PHASES:Br,KEYWORD_ONLY_DIMENSIONS:$r};require.main===module&&bc().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 59ec57403..673bf8cc6 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1371,26 +1371,38 @@ async function cmdStatus() { process.stderr.write(`Warning: unindexed-artifact discovery failed: ${err.message}\n`); } - // 9. Manifest-knowledge consistency. + // 9. Manifest-knowledge consistency. Load all manifests once via + // `manifest list` rather than shelling out per spec topic — status was + // O(specs) processes before, which meant ~5s on 50-spec repos. const consistency = []; + let allManifests = null; + try { + allManifests = JSON.parse(runManifest(['list'])); + } catch (err) { + reportUnexpectedManifestError('cmdStatus:list', err); + } + const manifestByName = new Map(); + if (Array.isArray(allManifests)) { + for (const m of allManifests) if (m && m.name) manifestByName.set(m.name, m); + } + for (const wu of Object.keys(byWu)) { - const meta = getWorkUnitMeta(wu); - if (!meta) continue; - if (meta.status === 'cancelled') { + const m = manifestByName.get(wu); + if (!m) continue; + if (m.status === 'cancelled') { consistency.push(`Cancelled work unit still indexed: ${wu}`); } } - // Check for superseded specs. + // Superseded specs: look up each topic in the cached manifest tree. const specChunks = allChunks.filter((c) => c.phase === 'specification'); const specTopics = new Set(specChunks.map((c) => `${c.work_unit}.specification.${c.topic}`)); for (const key of specTopics) { - try { - const status = runManifest(['get', key, 'status']).trim(); - if (status === 'superseded') { - consistency.push(`Superseded spec still indexed: ${key}`); - } - } catch (_) { - // Skip if manifest lookup fails. + const [wuName, , topicName] = key.split('.'); + const m = manifestByName.get(wuName); + if (!m || !m.phases || !m.phases.specification || !m.phases.specification.items) continue; + const topicData = m.phases.specification.items[topicName]; + if (topicData && topicData.status === 'superseded') { + consistency.push(`Superseded spec still indexed: ${key}`); } } if (consistency.length > 0) { diff --git a/src/knowledge/store.js b/src/knowledge/store.js index cbce07dc3..0b0d528ef 100644 --- a/src/knowledge/store.js +++ b/src/knowledge/store.js @@ -271,6 +271,16 @@ async function searchHybrid( if (typeof similarity === 'number') query.similarity = similarity; if (where && Object.keys(where).length > 0) query.where = where; const res = await orama.search(db, query); + // Orama applies `similarity` as a post-filter on hybrid results, so a + // query with zero good vector matches can mask a strong BM25 hit. Fall + // back to a text-only search before giving up so keyword matches aren't + // silently dropped (deferred-issue #15). + if (res.hits.length === 0) { + const fallback = { mode: 'fulltext', term, limit }; + if (where && Object.keys(where).length > 0) fallback.where = where; + const fallbackRes = await orama.search(db, fallback); + return fallbackRes.hits.map(normaliseHit); + } return res.hits.map(normaliseHit); } From 9b1a1994368a164553fc72aaf4d813317ef09fa7 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:37:31 +0100 Subject: [PATCH 16/78] fix(migrate): 036 no longer inflates FILES_UPDATED counter when nothing changes MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit report_update was called unconditionally after the node block, even when zero manifests were modified. The orchestrator's counter (and the 'review changes' prompt it gates) now fires only on real updates. The node pass exits 2 on no-op; the bash wrapper routes that to report_skip instead. Also made the rc capture robust under the orchestrator's 'set -eo pipefail' — previously a non-zero node exit aborted the orchestrator at the rc=$? line. Closes deferred-issues #8. --- .../scripts/migrations/036-completed-at.sh | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/skills/workflow-migrate/scripts/migrations/036-completed-at.sh b/skills/workflow-migrate/scripts/migrations/036-completed-at.sh index 1cf9ab3f6..a256d889f 100644 --- a/skills/workflow-migrate/scripts/migrations/036-completed-at.sh +++ b/skills/workflow-migrate/scripts/migrations/036-completed-at.sh @@ -52,6 +52,7 @@ function toISODate(ms) { return yyyy + '-' + mm + '-' + dd; } +let modified = 0; for (const entry of entries) { if (!entry.isDirectory() || entry.name.startsWith('.')) continue; @@ -75,11 +76,17 @@ for (const entry of entries) { m.completed_at = toISODate(latest); fs.writeFileSync(mPath, JSON.stringify(m, null, 2) + '\n'); + modified++; } -" "$WORKFLOWS_DIR" 2>/dev/null +// Exit 2 signals 'no changes' to the bash wrapper so report_skip fires +// instead of report_update — keeps the orchestrator's counter honest. +process.exit(modified > 0 ? 0 : 2); +" "$WORKFLOWS_DIR" 2>/dev/null && rc=0 || rc=$? -if [ $? -eq 0 ]; then +if [ "$rc" -eq 0 ]; then report_update else + # Either exit-2 (no changes) or an unexpected error — in both cases the + # orchestrator should not inflate the FILES_UPDATED counter. report_skip fi From c72a3072e62e2c6078c7ab06d98f859bb587bae3 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 21:38:17 +0100 Subject: [PATCH 17/78] docs(knowledge): mark deferred issues #1-6, #8-18 resolved; #7 kept doc-only Closes the deferred-issues ledger for the knowledge-base pre-merge cleanup pass. 16 of 18 items fixed in code across earlier commits on this branch; #7 ('--work-unit' as boost not filter) stays open as a deliberate design choice already documented in SKILL.md. --- knowledge-base/deferred-issues.md | 42 ++++++++++++++++--------------- 1 file changed, 22 insertions(+), 20 deletions(-) diff --git a/knowledge-base/deferred-issues.md b/knowledge-base/deferred-issues.md index d07ab4d22..87c073d3b 100644 --- a/knowledge-base/deferred-issues.md +++ b/knowledge-base/deferred-issues.md @@ -6,108 +6,110 @@ Format: `### N. Title — Severity` Each entry records: where, what, why it was deferred, and a mitigation idea. Circle back when working on the owning area. +Items below marked **RESOLVED** were addressed during the pre-merge cleanup pass on `feat/knowledge-base-phase-8` (commits after 2026-04-20). Each entry still records the original problem for provenance. + --- ## Phase 4 (CLI Complete) — Deferred -### 1. Index/rebuild TOCTOU on embedding dimensions — Critical-rare +### 1. Index/rebuild TOCTOU on embedding dimensions — Critical-rare — **RESOLVED** **Location:** `src/knowledge/index.js` `indexSingleFile` lines ~400–450. **Description:** Embeddings are computed using `effectiveProvider.dimensions()` BEFORE acquiring the lock. Inside the lock the store is reloaded but provider-state is not re-validated. If a concurrent `rebuild` recreates the store with different dimensions between embed and insert, `insertDocument` will fail or corrupt the vector index. **Why deferred:** Requires concurrent rebuild during indexing — extremely rare in single-developer use. Phase 5+ skill orchestration will serialize. **Mitigation:** Re-validate provider state inside the lock after store reload; abort if schema mismatch. -### 2. Pending queue unbounded growth on persistent failures — Medium +### 2. Pending queue unbounded growth on persistent failures — Medium — **RESOLVED** **Location:** `src/knowledge/index.js` `processPendingQueue` catch block. **Description:** Items that fail catch-up retry stay in the queue forever. No max-retry counter, no eviction. If failure is permanent (renamed work unit, malformed file), each bulk run wastes 3 OpenAI calls per item indefinitely. **Mitigation:** Add `attempts` counter to pending entry; evict at 10 with stderr warning. -### 3. Rebuild has no rollback — Medium +### 3. Rebuild has no rollback — Medium — **RESOLVED** **Location:** `src/knowledge/index.js` `cmdRebuild`. **Description:** Deletes `store.msp` and `metadata.json` BEFORE running bulk index. If bulk index throws (network down, OpenAI outage), left with no store, no metadata. **Mitigation:** Move old files to `.bak` suffix; restore on bulk-index failure. -### 4. `getWorkUnitMeta` / `discoverArtifacts` / `runManifest` swallow all errors — Medium +### 4. `getWorkUnitMeta` / `discoverArtifacts` / `runManifest` swallow all errors — Medium — **RESOLVED** **Location:** Multiple helpers in `src/knowledge/index.js`. **Description:** Catch-alls return null/empty on manifest CLI failure. Hides broken MANIFEST_JS path, corrupt manifest JSON, etc. Compact and status consistency checks silently skip work units; bulk index reports "0 files" on broken manifest. **Mitigation:** Distinguish exit-code-1 (key not found) from other errors; surface unexpected errors to stderr at minimum. -### 5. `MANIFEST_JS` fallback resolves silently to non-existent path — Medium +### 5. `MANIFEST_JS` fallback resolves silently to non-existent path — Medium — **RESOLVED** **Location:** `src/knowledge/index.js` MANIFEST_JS constant (~line 26). **Description:** If neither candidate path exists, fallback resolves to a path that doesn't exist. `execFileSync` throws ENOENT, caught silently in `discoverArtifacts`, returning empty array. Bulk index becomes a silent no-op. **Mitigation:** Throw at module load if MANIFEST_JS doesn't resolve to an existing file. -### 6. Status shells manifest CLI per spec topic — Low (perf) +### 6. Status shells manifest CLI per spec topic — Low (perf) — **RESOLVED** **Location:** `src/knowledge/index.js` `cmdStatus` superseded-spec consistency check. **Description:** N node processes spawned for N spec topics. Status slow on repos with many specs (~5s for 50 topics). **Mitigation:** Cache full manifest once per status invocation; read spec statuses from the cached object. -### 7. `--work-unit` filter vs boost semantics — Low (UX) +### 7. `--work-unit` filter vs boost semantics — Low (UX) — **DOC-ONLY** **Location:** `src/knowledge/index.js` `cmdQuery`. -**Description:** `--work-unit` is a re-rank proximity boost, not a hard filter. Inconsistent with `--phase`/`--work-type`/`--topic` which are filters. Usage text was updated to clarify, but inconsistency remains. -**Mitigation:** Phase 5+: introduce separate `--boost-work-unit` and let `--work-unit` filter; or add `--scope work-unit:foo` syntax. +**Description:** `--work-unit` is a re-rank proximity boost, not a hard filter. Inconsistent with `--phase`/`--work-type`/`--topic` which are filters. +**Status:** Code behaviour deliberately preserved (cross-work-unit context is the point of the KB). `SKILL.md` lines 61 + 134 document the boost semantics explicitly. Any CLI-level split (`--boost-work-unit` vs `--filter-work-unit`) is a scope-expanding redesign, kept deferred. -### 8. Migration `report_update` called unconditionally — Low +### 8. Migration `report_update` called unconditionally — Low — **RESOLVED** **Location:** `skills/workflow-migrate/scripts/migrations/036-completed-at.sh` (and pattern from 035). **Description:** `report_update` is called even when 0 work units were modified. Inflates orchestrator counter; may trigger false "review changes" prompt. **Mitigation:** Cross-migration cleanup — have node script exit 2 when nothing modified; bash dispatches `report_update` vs `report_skip` on exit code. -### 9. `withRetry` swallows programming errors like network errors — Low +### 9. `withRetry` swallows programming errors like network errors — Low — **RESOLVED** **Location:** `src/knowledge/index.js` `withRetry`. **Description:** A `TypeError` from a typo is retried 3× with 7s of sleep before rethrow. Wastes time during development. **Mitigation:** Discriminate error types — don't retry `TypeError`/`ReferenceError`/`SyntaxError`. -### 10. `indexSingleFile` stack trace lost in pending queue — Low +### 10. `indexSingleFile` stack trace lost in pending queue — Low — **RESOLVED** **Location:** `src/knowledge/index.js` `cmdIndexBulk` catch block. **Description:** `addToPendingQueue(item.file, err.message)` saves only the message, not the stack. Debugging relies on stderr which users may not capture. **Mitigation:** Accept and write a bounded stack snippet; or always `console.error(err.stack)` before queueing. -### 11. KEYWORD_ONLY_DIMENSIONS = 1536 silent provider lock-in — Medium (UX) +### 11. KEYWORD_ONLY_DIMENSIONS = 1536 silent provider lock-in — Medium (UX) — **RESOLVED** **Location:** `src/knowledge/index.js` `cmdIndex` / case 4 of `resolveProviderState`. **Description:** User first indexes without provider (keyword-only, schema dims=1536). Later configures OpenAI (also 1536 dims). Subsequent `knowledge index` calls silently stay keyword-only. Only `knowledge status` warns. User must know to run `rebuild`. **Mitigation:** Print upgrade note on `cmdIndex` when entering case 4 with a provider now configured. -### 12. OpenAIProvider mutates `res.data` in place — Low (style) +### 12. OpenAIProvider mutates `res.data` in place — Low (style) — **RESOLVED** **Location:** `src/knowledge/providers/openai.js` `embedBatch`. **Description:** `.sort()` mutates. Response used only locally so no observable effect. **Mitigation:** Use `[...res.data].sort(...)`. -### 13. OpenAIProvider `embed()` assumes non-empty `res.data[0]` — Low +### 13. OpenAIProvider `embed()` assumes non-empty `res.data[0]` — Low — **RESOLVED** **Location:** `src/knowledge/providers/openai.js` ~line 45. **Description:** If OpenAI returns `{ data: [] }` throws non-descriptive TypeError. Not observed in practice (OpenAI returns 400 for empty inputs). **Mitigation:** Guard and throw a provider-specific error. -### 14. Project config cannot unset system config field — Low +### 14. Project config cannot unset system config field — Low — **RESOLVED** **Location:** `src/knowledge/config.js` `loadConfig` merge loop. **Description:** `Object.assign`-style merge only copies defined values; setting project `model: undefined` cannot unset a system `model: "x"` default. **Mitigation:** Treat explicit `null` as unset sentinel in the merge. -### 15. `searchHybrid` similarity threshold may drop strong text-only matches — Low +### 15. `searchHybrid` similarity threshold may drop strong text-only matches — Low — **RESOLVED** **Location:** `src/knowledge/store.js` `searchHybrid`. **Description:** Orama applies `similarity` as a filter on hybrid results; zero vector matches can mask strong BM25 matches. **Mitigation:** Phase 5+ retrieval tuning — fall back to text-only if hybrid returns 0. -### 16. `cmdRebuild` stdin left in flowing mode — Low +### 16. `cmdRebuild` stdin left in flowing mode — Low — **RESOLVED** **Location:** `src/knowledge/index.js` `cmdRebuild`. **Description:** After `process.stdin.resume()`, stdin stays flowing. Irrelevant for CLI but leaks if called as library. **Mitigation:** `process.stdin.pause()` after reading the line. -### 17. Bulk discovery misses work units not in project manifest — Medium +### 17. Bulk discovery misses work units not in project manifest — Medium — **RESOLVED** **Location:** `src/knowledge/index.js` `discoverArtifacts` → `manifest list`. **Description:** `manifest list` reads from the project manifest, not the filesystem. Work units created before the project manifest system (legacy) are invisible to bulk index and status unindexed-artifact detection. Real-data testing on Tick showed 9 work units on disk but only 1 registered in project manifest → only 2 files indexed. @@ -117,7 +119,7 @@ Each entry records: where, what, why it was deferred, and a mitigation idea. Cir ## Phase 5 (Skill Integration) — Deferred -### 18. Knowledge removal has no automatic retry on failure — Medium +### 18. Knowledge removal has no automatic retry on failure — Medium — **RESOLVED** **Location:** `skills/workflow-start/references/manage-work-unit.md` (cancellation), `skills/workflow-specification-process/references/spec-completion.md` (supersession), `skills/workflow-specification-process/references/promote-to-cross-cutting.md` (promotion). **Description:** When `knowledge remove` fails (store locked, CLI error), the skill displays a warning and tells the user to retry manually. Unlike indexing failures — which have a pending queue for automatic catch-up on the next `index` call — removal failures have no retry mechanism. Stale chunks from cancelled/superseded/promoted work persist in the knowledge base until the user manually runs `knowledge remove`. From a770b05ead4e5db0ae80b6326c1af66a8c710f37 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 22:13:16 +0100 Subject: [PATCH 18/78] revert: restore manifest list to registry-when-populated behaviour (#17 withdrawn) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The Tick data that motivated deferred-issues #17 (9 dirs on disk, 1 in registry) was a one-off project-manifest corruption, not a systemic issue. Migration 031 already populates the registry from the filesystem on first run, and work units created via 'manifest init' register atomically. The registry is the authoritative source — a filesystem scan papering over a corrupted registry masks real problems. Reverts the cmdList union added in bbe53a4a. Test covering the union case is dropped. deferred-issues.md entry updated to reflect the misdiagnosis and withdraw the fix. --- knowledge-base/deferred-issues.md | 6 +++--- skills/workflow-manifest/scripts/manifest.cjs | 19 ++++++++----------- tests/scripts/test-workflow-manifest.sh | 18 ------------------ 3 files changed, 11 insertions(+), 32 deletions(-) diff --git a/knowledge-base/deferred-issues.md b/knowledge-base/deferred-issues.md index 87c073d3b..1ceaa6560 100644 --- a/knowledge-base/deferred-issues.md +++ b/knowledge-base/deferred-issues.md @@ -109,11 +109,11 @@ Items below marked **RESOLVED** were addressed during the pre-merge cleanup pass **Description:** After `process.stdin.resume()`, stdin stays flowing. Irrelevant for CLI but leaks if called as library. **Mitigation:** `process.stdin.pause()` after reading the line. -### 17. Bulk discovery misses work units not in project manifest — Medium — **RESOLVED** +### 17. Bulk discovery misses work units not in project manifest — **WITHDRAWN** **Location:** `src/knowledge/index.js` `discoverArtifacts` → `manifest list`. -**Description:** `manifest list` reads from the project manifest, not the filesystem. Work units created before the project manifest system (legacy) are invisible to bulk index and status unindexed-artifact detection. Real-data testing on Tick showed 9 work units on disk but only 1 registered in project manifest → only 2 files indexed. -**Mitigation:** Fall back to filesystem scan (like `manifest list` already does when project manifest has no `work_units` key) or add a "register all" migration. +**Original claim:** `manifest list` reads from the project manifest, not the filesystem. Legacy work units invisible to bulk index. +**Why withdrawn:** The Tick-project data that motivated this entry (9 dirs on disk, 1 registered) was the result of a one-off project-manifest corruption bug — not a systemic code issue. Migration 031 already populates the registry from the filesystem; once it has run, the registry is authoritative and reading it directly is correct. Work units are created via `manifest init`, which registers them atomically. A work unit that exists on disk but not in the registry is either mid-migration or the registry has been corrupted externally — neither is something `manifest list` should paper over. --- diff --git a/skills/workflow-manifest/scripts/manifest.cjs b/skills/workflow-manifest/scripts/manifest.cjs index 355245717..57f6a16c5 100644 --- a/skills/workflow-manifest/scripts/manifest.cjs +++ b/skills/workflow-manifest/scripts/manifest.cjs @@ -646,19 +646,16 @@ function cmdList(args) { return; } - // Union project manifest registry with filesystem scan. Using the registry - // alone misses legacy work units (dirs created before the registry existed); - // using the filesystem alone misses nothing but discards the registry's - // purpose. Either source independently leaves gaps — union both. + // Use project manifest for work unit names, fall back to filesystem scan const proj = readProjectManifest(); - const namesSet = new Set(); - if (proj.work_units) { - for (const n of Object.keys(proj.work_units)) namesSet.add(n); - } - for (const e of fs.readdirSync(WORKFLOWS_DIR, { withFileTypes: true })) { - if (e.isDirectory() && !e.name.startsWith('.')) namesSet.add(e.name); + let names; + if (proj.work_units && Object.keys(proj.work_units).length > 0) { + names = Object.keys(proj.work_units); + } else { + names = fs.readdirSync(WORKFLOWS_DIR, { withFileTypes: true }) + .filter(e => e.isDirectory() && !e.name.startsWith('.')) + .map(e => e.name); } - const names = Array.from(namesSet); const results = []; diff --git a/tests/scripts/test-workflow-manifest.sh b/tests/scripts/test-workflow-manifest.sh index 30bccde35..aff6fc589 100755 --- a/tests/scripts/test-workflow-manifest.sh +++ b/tests/scripts/test-workflow-manifest.sh @@ -598,24 +598,6 @@ assert_not_contains "$output" '"name": "old-thing"' "Dot-prefixed directory skip echo "" -# ---------------------------------------------------------------------------- - -echo -e "${YELLOW}Test: list unions project registry with filesystem (legacy unit recovery)${NC}" -setup_fixture -# Registered via project manifest -run_cli init registered --work-type feature --description "Registered" >/dev/null 2>&1 -# Legacy: work unit dir + manifest on disk, but NOT in project manifest registry -mkdir -p "$TEST_DIR/.workflows/legacy" -cat > "$TEST_DIR/.workflows/legacy/manifest.json" << 'EOF' -{"name":"legacy","work_type":"feature","status":"in-progress","description":"Pre-registry"} -EOF -output=$(run_cli_stdout list) - -assert_contains "$output" '"name": "registered"' "Registered work unit listed" -assert_contains "$output" '"name": "legacy"' "Legacy (filesystem-only) work unit listed" - -echo "" - # ============================================================================ # INIT-PHASE TESTS # ============================================================================ From 5c02bbe3ea1c5402d661f8b473e89395c4093a63 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 22:18:10 +0100 Subject: [PATCH 19/78] cleanup: drop unused XDG_CONFIG_HOME export in test isolation The knowledge CLI resolves the system config path via os.homedir(), which only honours $HOME. XDG_CONFIG_HOME was dead weight. --- tests/scripts/test-knowledge-cli.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 929a594c3..335e821e1 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -26,10 +26,10 @@ assert_eq() { # Isolate tests from the developer's real system config (~/.config/workflows/). # Without this, a real OpenAI config leaks into keyword-only tests and breaks -# Test 11 onward. +# Test 11 onward. The knowledge CLI resolves the system path via os.homedir(), +# which honours $HOME — that's the only var that matters. FAKE_HOME=$(mktemp -d) export HOME="$FAKE_HOME" -export XDG_CONFIG_HOME="$FAKE_HOME/.config" trap 'rm -rf "$FAKE_HOME"' EXIT # Create a temp dir as the project root for each test group. From 4a80725827f07c04a3f1e1ffb832c479979b449c Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 22:23:13 +0100 Subject: [PATCH 20/78] Revert "fix(migrate): 036 no longer inflates FILES_UPDATED counter when nothing changes" This reverts commit 9b1a1994368a164553fc72aaf4d813317ef09fa7. --- .../scripts/migrations/036-completed-at.sh | 11 ++--------- 1 file changed, 2 insertions(+), 9 deletions(-) diff --git a/skills/workflow-migrate/scripts/migrations/036-completed-at.sh b/skills/workflow-migrate/scripts/migrations/036-completed-at.sh index a256d889f..1cf9ab3f6 100644 --- a/skills/workflow-migrate/scripts/migrations/036-completed-at.sh +++ b/skills/workflow-migrate/scripts/migrations/036-completed-at.sh @@ -52,7 +52,6 @@ function toISODate(ms) { return yyyy + '-' + mm + '-' + dd; } -let modified = 0; for (const entry of entries) { if (!entry.isDirectory() || entry.name.startsWith('.')) continue; @@ -76,17 +75,11 @@ for (const entry of entries) { m.completed_at = toISODate(latest); fs.writeFileSync(mPath, JSON.stringify(m, null, 2) + '\n'); - modified++; } -// Exit 2 signals 'no changes' to the bash wrapper so report_skip fires -// instead of report_update — keeps the orchestrator's counter honest. -process.exit(modified > 0 ? 0 : 2); -" "$WORKFLOWS_DIR" 2>/dev/null && rc=0 || rc=$? +" "$WORKFLOWS_DIR" 2>/dev/null -if [ "$rc" -eq 0 ]; then +if [ $? -eq 0 ]; then report_update else - # Either exit-2 (no changes) or an unexpected error — in both cases the - # orchestrator should not inflate the FILES_UPDATED counter. report_skip fi From 5b71ef44c3ea3383a9736c584eaea7ca1712505b Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 20 Apr 2026 22:24:42 +0100 Subject: [PATCH 21/78] fix(knowledge): add RangeError to withRetry no-retry set; withdraw deferred #8 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit withRetry now bails on RangeError alongside TypeError/ReferenceError/ SyntaxError. Bad Math.min args, invalid array sizes, and similar programming errors shouldn't burn 7s of retry budget. Also withdraws deferred-issues #8 (migration 036/035 counter). Fixing migrations retroactively only helps users who haven't yet run them — the migration id is recorded in .workflows/.state/migrations after first run and never re-executed. Snapshot principle > one-time counter-reporting accuracy. --- knowledge-base/deferred-issues.md | 4 ++-- skills/workflow-knowledge/scripts/knowledge.cjs | 2 +- src/knowledge/index.js | 7 ++++++- 3 files changed, 9 insertions(+), 4 deletions(-) diff --git a/knowledge-base/deferred-issues.md b/knowledge-base/deferred-issues.md index 1ceaa6560..64cd9d64e 100644 --- a/knowledge-base/deferred-issues.md +++ b/knowledge-base/deferred-issues.md @@ -55,11 +55,11 @@ Items below marked **RESOLVED** were addressed during the pre-merge cleanup pass **Description:** `--work-unit` is a re-rank proximity boost, not a hard filter. Inconsistent with `--phase`/`--work-type`/`--topic` which are filters. **Status:** Code behaviour deliberately preserved (cross-work-unit context is the point of the KB). `SKILL.md` lines 61 + 134 document the boost semantics explicitly. Any CLI-level split (`--boost-work-unit` vs `--filter-work-unit`) is a scope-expanding redesign, kept deferred. -### 8. Migration `report_update` called unconditionally — Low — **RESOLVED** +### 8. Migration `report_update` called unconditionally — Low — **WITHDRAWN** **Location:** `skills/workflow-migrate/scripts/migrations/036-completed-at.sh` (and pattern from 035). **Description:** `report_update` is called even when 0 work units were modified. Inflates orchestrator counter; may trigger false "review changes" prompt. -**Mitigation:** Cross-migration cleanup — have node script exit 2 when nothing modified; bash dispatches `report_update` vs `report_skip` on exit code. +**Why withdrawn:** Migrations are point-in-time snapshots. Once a migration id is recorded in `.workflows/.state/migrations`, it never re-runs — editing the bash wrapper helps only users who haven't yet run it. The counter is a one-time UX nit during a single migration pass; the fix-vs-snapshot-principle tradeoff isn't worth it. ### 9. `withRetry` swallows programming errors like network errors — Low — **RESOLVED** diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 5cc21e5c7..a1056f775 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -141,7 +141,7 @@ Options: --phase Filter by phase --topic Filter by topic --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function Z(){return z.join(ne(),"metadata.json")}function de(){return z.join(ne(),".lock")}function Cf(t){return new Promise(e=>setTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;isetTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;i Date: Mon, 20 Apr 2026 22:40:19 +0100 Subject: [PATCH 22/78] fix(manifest): exit code 2 for expected misses, 1 for real errors MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Eliminates the stderr-regex fragility in the knowledge-base helpers that classify manifest CLI failures. manifest.cjs now uses: exit 0 — success exit 1 — real error (corrupt JSON, validation failure, bad args, I/O) exit 2 — expected miss (work unit not found, path not found, value not found in list, project manifest not found) die() takes an optional code (default 1 preserves existing behaviour). 10 'not found' call sites opt in to code 2. Knowledge helpers (discoverArtifacts, getWorkUnitMeta, cmdStatus unindexed-artifact block) check err.status === 2 instead of matching /not found|does not exist/i in stderr. Any future reword of a die() message no longer risks flipping expected↔unexpected classification. Test suite: 2 existing assertions updated to expect exit 2 on not-found paths; new test exercises the 1-vs-2 contract across missing work unit, missing path, invalid work-type, and corrupt JSON. Closes deferred-issues #4 (properly this time). --- knowledge-base/deferred-issues.md | 3 +- .../workflow-knowledge/scripts/knowledge.cjs | 32 +++++++++---------- skills/workflow-manifest/scripts/manifest.cjs | 31 ++++++++++-------- src/knowledge/index.js | 12 +++---- tests/scripts/test-workflow-manifest.sh | 29 +++++++++++++++-- 5 files changed, 68 insertions(+), 39 deletions(-) diff --git a/knowledge-base/deferred-issues.md b/knowledge-base/deferred-issues.md index 64cd9d64e..e7f063ae9 100644 --- a/knowledge-base/deferred-issues.md +++ b/knowledge-base/deferred-issues.md @@ -33,9 +33,10 @@ Items below marked **RESOLVED** were addressed during the pre-merge cleanup pass ### 4. `getWorkUnitMeta` / `discoverArtifacts` / `runManifest` swallow all errors — Medium — **RESOLVED** -**Location:** Multiple helpers in `src/knowledge/index.js`. +**Location:** Multiple helpers in `src/knowledge/index.js`; convention in `skills/workflow-manifest/scripts/manifest.cjs`. **Description:** Catch-alls return null/empty on manifest CLI failure. Hides broken MANIFEST_JS path, corrupt manifest JSON, etc. Compact and status consistency checks silently skip work units; bulk index reports "0 files" on broken manifest. **Mitigation:** Distinguish exit-code-1 (key not found) from other errors; surface unexpected errors to stderr at minimum. +**Resolution:** `manifest.cjs` `die()` now takes an optional exit code — 2 for "expected miss" (not-found paths, missing work units, missing values), 1 for real errors (corrupt JSON, validation failures, bad args). Knowledge-base helpers classify via `err.status === 2` on execFileSync — stable and not reliant on stderr-text regex. 10 die() sites updated; 4 tests updated to assert the new codes; one new test covers the exit-code contract directly. ### 5. `MANIFEST_JS` fallback resolves silently to non-existent path — Medium — **RESOLVED** diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index a1056f775..ea836107b 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -8,8 +8,8 @@ Read more at https://docs.orama.com/docs/orama-js/plugins/plugin-secure-proxy#pl `,PLUGIN_SECURE_PROXY_MISSING_CHAT_MODEL:`Could not find a chat model defined in the secure proxy plugin configuration. Please provide a chat model before proceeding with creating an answer session. 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an=I(cn=>{"use strict";Object.defineProperty(cn,"__esModule",{value:!0});cn.Decoder=void 0;var Sr=oo(),Od=sn(),De=tn(),Pd=Xt(),ao=pr(),Nd=co(),le=en(),br="array",rt="map_key",lo="map_value",Ud=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new le.DecodeError("The type of key must be string or number but "+typeof t)},Ir=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=br,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===br){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===lo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,Er=new DataView(new ArrayBuffer(0)),Rd=new Uint8Array(Er.buffer);try{Er.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var uo=new RangeError("Insufficient data"),Ld=new Nd.CachedKeyDecoder,xr=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Er;bytes=Rd;headByte=nt;stack=new Ir;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Od.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??De.UINT32_MAX,this.maxBinLength=e?.maxBinLength??De.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??De.UINT32_MAX,this.maxMapLength=e?.maxMapLength??De.UINT32_MAX,this.maxExtLength=e?.maxExtLength??De.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Ld,this.mapKeyConverter=e?.mapKeyConverter??Ud}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,ao.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,ao.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield 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${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. 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Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function Af(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(B.existsSync(t))try{r=Rr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ot.dirname(t);B.existsSync(o)||B.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=B.openSync(c,"w",384);try{B.writeSync(a,JSON.stringify(i,null,2)+` +`).trim()===""}Do.exports={chunk:mf}});var Or=I((ap,Oo)=>{"use strict";var ko="stub";function If(t){let e=2166136261;for(let n=0;n>>0}function xf(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var kr=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=If(n)||1,s=xf(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Po="text-embedding-3-small",No="https://api.openai.com/v1/embeddings",Pr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Po,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions});return[...(await this._fetch(r)).data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-u.index);for(let a=0;a{"use strict";var B=require("fs"),ot=require("path"),Ro=require("os"),{StubProvider:Ef}=Or(),{OpenAIProvider:vf}=dn(),Lo={similarity_threshold:.8,decay_months:6},Nr=["stub","openai"],jo={openai:"OPENAI_API_KEY"};function Co(){return ot.join(Ro.homedir(),".config","workflows","config.json")}function Fo(t){return ot.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Bo(){return ot.join(Ro.homedir(),".config","workflows","credentials.json")}function Ur(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function Rr(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function Af(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(B.existsSync(t))try{r=Rr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ot.dirname(t);B.existsSync(o)||B.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=B.openSync(c,"w",384);try{B.writeSync(a,JSON.stringify(i,null,2)+` `)}finally{B.closeSync(a)}B.chmodSync(c,384),B.renameSync(c,t);try{B.chmodSync(t,384)}catch{}}function $o(t,e){if(!t)return null;let n=jo[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Bo(),s;try{s=Rr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function Tf(t){let e=t&&t.systemPath||Co(),n=t&&t.projectPath||Fo(),r=Ur(e),s=Ur(n),i=Object.assign({},Lo);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=$o(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function Df(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Ef(n!=null?{dimensions:n}:void 0)}if(!Nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new vf({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function Mf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` -`,"utf8"),B.renameSync(r,t)}qo.exports={DEFAULTS:Lo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:jo,systemConfigPath:Co,projectConfigPath:Fo,credentialsPath:Bo,readConfigFile:Ur,loadConfig:Tf,loadCredentials:Rr,writeCredentials:Af,resolveApiKey:$o,resolveProvider:Df,writeConfigFile:Mf}});var ic=I((fp,sc)=>{"use strict";var Ie=require("fs"),xe=require("path"),kf=require("readline"),$=Lr(),jr=Mr(),{OpenAIProvider:Of}=dn(),zo="text-embedding-3-small",Vo=1536,Wo=1536;function Ko(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`,"utf8"),B.renameSync(r,t)}qo.exports={DEFAULTS:Lo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:jo,systemConfigPath:Co,projectConfigPath:Fo,credentialsPath:Bo,readConfigFile:Ur,loadConfig:Tf,loadCredentials:Rr,writeCredentials:Af,resolveApiKey:$o,resolveProvider:Df,writeConfigFile:Mf}});var ic=I((dp,sc)=>{"use strict";var Ie=require("fs"),xe=require("path"),kf=require("readline"),$=Lr(),jr=Mr(),{OpenAIProvider:Of}=dn(),zo="text-embedding-3-small",Vo=1536,Wo=1536;function Ko(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function Ho(){let t=kf.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. `),t.close(),process.exit(130)}),t}function fn(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Go(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` @@ -151,7 +151,7 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`)}async function Bf(t,e,n,r){if(t.length===0)return yn(e,n,r);let s=t[0],i=z.resolve(s);x.existsSync(i)||(process.stderr.write(`File not found: ${i} `),process.exit(1));let o=qr(s),c=await lt(()=>zr(s,o,n,r),{maxAttempts:3,backoff:ut});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await mc(n,r,jf)}async function zr(t,e,n,r){let s=Ff(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!x.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(x.readFileSync(i,"utf8")),c=z.resolve(t),a=x.readFileSync(c,"utf8"),u=lc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=Z(),h=de();x.existsSync(l)||x.mkdirSync(l,{recursive:!0});let g,m,y=x.existsSync(d),S=x.existsSync(f);y&&(g=await v.loadStore(d)),S&&(m=v.readMetadata(f),Array.isArray(m.pending)||(m.pending=[]));let p,_;if(m){let T=pc(m,n,r);p=T.mode,_=T.provider}else r?(p="full",_=r):(p="keyword-only",_=null);if(!g){let T=_?_.dimensions():n.dimensions||$r;g=await v.createStore(T)}let w=null;if(p==="full"&&_&&u.length>0){let T=u.map(O=>O.content);w=await _.embedBatch(T)}let b=Date.now(),A=o.confidence||"medium",D=u.map((T,O)=>{let se=String(O+1).padStart(3,"0"),Q={id:`${e.workUnit}-${e.phase}-${e.topic}-${se}`,content:T.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:A,source_file:t,timestamp:b};return w&&(Q.embedding=w[O]),Q});return await v.withLock(h,async()=>{if(y?g=await v.loadStore(d):x.existsSync(d)&&(g=await v.loadStore(d)),p==="full"&&x.existsSync(f)){let O=v.readMetadata(f),se=_.dimensions();if(O.provider&&O.dimensions!==se)throw new Error(`Store schema changed during index (concurrent rebuild). 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Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=Z(),h=de();x.existsSync(l)||x.mkdirSync(l,{recursive:!0});let g,m,y=x.existsSync(d),S=x.existsSync(f);y&&(g=await v.loadStore(d)),S&&(m=v.readMetadata(f),Array.isArray(m.pending)||(m.pending=[]));let p,_;if(m){let T=pc(m,n,r);p=T.mode,_=T.provider}else r?(p="full",_=r):(p="keyword-only",_=null);if(!g){let T=_?_.dimensions():n.dimensions||$r;g=await v.createStore(T)}let w=null;if(p==="full"&&_&&u.length>0){let T=u.map(O=>O.content);w=await _.embedBatch(T)}let b=Date.now(),A=o.confidence||"medium",D=u.map((T,O)=>{let se=String(O+1).padStart(3,"0"),Q={id:`${e.workUnit}-${e.phase}-${e.topic}-${se}`,content:T.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:A,source_file:t,timestamp:b};return w&&(Q.embedding=w[O]),Q});return await v.withLock(h,async()=>{if(y?g=await v.loadStore(d):x.existsSync(d)&&(g=await v.loadStore(d)),p==="full"&&x.existsSync(f)){let O=v.readMetadata(f),se=_.dimensions();if(O.provider&&O.dimensions!==se)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${se}, store now has dims=${O.dimensions}. Retrying.`)}await v.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let O of D)await v.insertDocument(g,O);await v.saveStore(g,d);let T=x.existsSync(f)?v.readMetadata(f):null;if(T)T.last_indexed=new Date().toISOString(),Array.isArray(T.pending)||(T.pending=[]),v.writeMetadata(f,T);else{let O={provider:_?n.provider:null,model:_?_.model():null,dimensions:_?_.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};v.writeMetadata(f,O)}}),D.length}function ct(t){let{execFileSync:e}=require("child_process");return e("node",[Lf,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function at(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} `)}async function gc(t,e,n,r){return(await v.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function Vr(){let t=[],e;try{let n=ct(["list"]);e=JSON.parse(n)}catch(n){return at("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of Br){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let u=ct(["resolve",`${r}.${s}.${o}`]).trim();u&&x.existsSync(z.resolve(u))&&t.push({file:u,workUnit:r,phase:s,topic:o})}catch(a){at(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function yn(t,e,n){let r=Vr(),s=ne(),i=re();x.existsSync(s)||x.mkdirSync(s,{recursive:!0});let o=null;x.existsSync(i)&&(o=await v.loadStore(i));let c=0,a=0,u=0;for(let l of r){if(o&&await gc(o,l.workUnit,l.phase,l.topic)){u++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await lt(()=>zr(l.file,d,e,n),{maxAttempts:3,backoff:ut});process.stdout.write(`Indexing ${l.file}... ${f} chunks `),c++,a+=f,x.existsSync(i)&&(o=await v.loadStore(i))}catch(d){await yc(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. `),d.stack&&process.stderr.write(d.stack+` @@ -160,27 +160,27 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `),await gn(o.file);continue}let c=z.resolve(o.file);if(!x.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. 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Run \`knowledge rebuild\` to reindex. +`),await ac(r)}catch(s){try{await wc({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Sc(t){let e=re(),n=de();if(!x.existsSync(e))return 0;let r=0;return await v.withLock(n,async()=>{let s=await v.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await v.removeByFilter(s,i),await v.saveStore(s,e)}),r}var $f={high:4,medium:3,"low-medium":2,low:1};function qf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function zf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}function Vf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;e&&i.work_unit===e&&(o+=.1);let c=$f[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Wf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} - Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Hf(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N] + Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Kf(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N] `),process.exit(1));let s=t,i=e.limit||10,o=re(),c=Z();if(!x.existsSync(o)){process.stdout.write(`[0 results] -`);return}let a=await v.loadStore(o),u="keyword-only",l=null,d=null;x.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=v.readMetadata(c),h=Kf(f,n,r);u=h.mode,l=h.provider,u==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":u==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let w=e.phase.split(",").map(b=>b.trim());g.phase=w.length===1?{eq:w[0]}:{in:w}}if(e.workType){let w=e.workType.split(",").map(b=>b.trim());g.work_type=w.length===1?{eq:w[0]}:{in:w}}if(e.topic){let w=e.topic.split(",").map(b=>b.trim());g.topic=w.length===1?{eq:w[0]}:{in:w}}let m=n.similarity_threshold||.8,y=Object.keys(g).length>0?g:void 0,S=new Map;for(let w of s){let b;if(u==="full"&&l){let A=await lt(()=>l.embed(w),{maxAttempts:3,backoff:ut});b=await v.searchHybrid(a,{term:w,vector:A,where:y,limit:i*2,similarity:m})}else b=await v.searchFulltext(a,{term:w,where:y,limit:i*2});for(let A of b){let D=S.get(A.id);(!D||A.score>D.score)&&S.set(A.id,A)}}let p=Wf(Array.from(S.values()),e.workUnit);p.length>i&&(p=p.slice(0,i));let _=[];d&&_.push(d),_.push(`[${p.length} results]`);for(let w of p){_.push("");let b=Vf(w.timestamp);_.push(`[${w.phase} | ${w.work_unit}/${w.topic} | ${w.confidence} | ${b}]`),_.push(w.content),_.push(`Source: ${w.source_file}`)}process.stdout.write(_.join(` +`);return}let a=await v.loadStore(o),u="keyword-only",l=null,d=null;x.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=v.readMetadata(c),h=Wf(f,n,r);u=h.mode,l=h.provider,u==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":u==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let w=e.phase.split(",").map(b=>b.trim());g.phase=w.length===1?{eq:w[0]}:{in:w}}if(e.workType){let w=e.workType.split(",").map(b=>b.trim());g.work_type=w.length===1?{eq:w[0]}:{in:w}}if(e.topic){let w=e.topic.split(",").map(b=>b.trim());g.topic=w.length===1?{eq:w[0]}:{in:w}}let m=n.similarity_threshold||.8,y=Object.keys(g).length>0?g:void 0,S=new Map;for(let w of s){let b;if(u==="full"&&l){let A=await lt(()=>l.embed(w),{maxAttempts:3,backoff:ut});b=await v.searchHybrid(a,{term:w,vector:A,where:y,limit:i*2,similarity:m})}else b=await v.searchFulltext(a,{term:w,where:y,limit:i*2});for(let A of b){let D=S.get(A.id);(!D||A.score>D.score)&&S.set(A.id,A)}}let p=Vf(Array.from(S.values()),e.workUnit);p.length>i&&(p=p.slice(0,i));let _=[];d&&_.push(d),_.push(`[${p.length} results]`);for(let w of p){_.push("");let b=zf(w.timestamp);_.push(`[${w.phase} | ${w.work_unit}/${w.topic} | ${w.confidence} | ${b}]`),_.push(w.content),_.push(`Source: ${w.source_file}`)}process.stdout.write(_.join(` `)+` -`)}async function Gf(){let t=ne(),e=z.join(t,"config.json"),n=re();if(!x.existsSync(t)){process.stdout.write(`not-ready +`)}async function Hf(){let t=ne(),e=z.join(t,"config.json"),n=re();if(!x.existsSync(t)){process.stdout.write(`not-ready `);return}if(!x.existsSync(e)){process.stdout.write(`not-ready `);return}if(!x.existsSync(n)){process.stdout.write(`not-ready `);return}try{await v.loadStore(n)}catch{process.stdout.write(`not-ready `);return}process.stdout.write(`ready -`)}async function Yf(){let t=ne(),e=re(),n=Z(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!x.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` +`)}async function Gf(){let t=ne(),e=re(),n=Z(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!x.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` `);return}let s=await v.loadStore(e),i=await v.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,_]of Object.entries(o))r.push(` ${p}: ${_}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,_]of Object.entries(c))r.push(` ${p}: ${_}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,_]of Object.entries(a))r.push(` ${p}: ${_}`)}r.push("");let l=(x.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),x.existsSync(n)){let p=v.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let b=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${b}/${Cr}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${Me(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${Fr})`)}let _;try{_=Be.loadConfig()}catch{_=null}if(_){let w=Be.resolveProvider(_);p.provider&&w&&(p.provider!==_.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),x.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=Vr(),_=[];for(let w of p)await gc(s,w.workUnit,w.phase,w.topic)||_.push(w.file);if(_.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${_.length}`);for(let w of _)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} `)}let h=[],g=null;try{g=JSON.parse(ct(["list"]))}catch(p){at("cmdStatus:list",p)}let m=new Map;if(Array.isArray(g))for(let p of g)p&&p.name&&m.set(p.name,p);for(let p of Object.keys(o)){let _=m.get(p);_&&_.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let y=i.filter(p=>p.phase==="specification"),S=new Set(y.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of S){let[_,,w]=p.split("."),b=m.get(_);if(!b||!b.phases||!b.phases.specification||!b.phases.specification.items)continue;let A=b.phases.specification.items[w];A&&A.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` -`)}async function Jf(t,e,n,r){let s=re(),i=Z(),o=de();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function Yf(t,e,n,r){let s=re(),i=Z(),o=de();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. -Type 'rebuild' to confirm: `),await Xf()!=="rebuild"&&(process.stderr.write(`Aborted. +Type 'rebuild' to confirm: `),await Jf()!=="rebuild"&&(process.stderr.write(`Aborted. `),process.exit(1)),Vr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) `),process.exit(1));let u=s+".bak",l=i+".bak";await v.withLock(o,async()=>{x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l),x.existsSync(s)&&x.renameSync(s,u),x.existsSync(i)&&x.renameSync(i,l);let d=r?r.dimensions():n&&n.dimensions||$r,f=await v.createStore(d);await v.saveStore(f,s),v.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. @@ -189,19 +189,19 @@ Type 'rebuild' to confirm: `),await Xf()!=="rebuild"&&(process.stderr.write(`Abo ${u} ${l} Rename them back manually to recover. Rollback error: ${f.message} -`)}throw d}x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l)}function Xf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Zf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`)}throw d}x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l)}function Jf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Xf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase `),process.exit(1)),await _c();let n=re();if(!x.existsSync(n)){let s=uc(e);process.stdout.write(`Removed 0 chunks for ${s} `);return}let r=uc(e);try{let s=await Sc(e);process.stdout.write(`Removed ${s} chunks for ${r} `)}catch(s){await wc(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. -`),process.exit(1)}}function uc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Qf(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){at(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return at(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function eh(t,e,n){await _c();let r=re(),s=de(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`),process.exit(1)}}function uc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Zf(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){at(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return at(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Qf(t,e,n){await _c();let r=re(),s=de(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!x.existsSync(r))return;let c=await v.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await v.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let y of l)d[y.work_unit]||(d[y.work_unit]=[]),d[y.work_unit].push(y);let f=[],h=[];for(let[y,S]of Object.entries(d)){let p=Qf(y);if(!p||p.status!=="completed"||!p.completed_at)continue;let _=zf(p.completed_at);if(!_||isNaN(_.getTime()))continue;let w=new Date(_);if(w.setMonth(w.getMonth()+o),w>a)continue;let b=S.filter(D=>D.phase!=="specification");if(b.length===0)continue;let A=new Set(b.map(D=>D.phase));f.push({workUnit:y,count:b.length,phases:A});for(let D of b)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((y,S)=>y+S.count,0);if(e.dryRun){let y=[];y.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let S of f)y.push(` \u2022 ${S.workUnit}: ${S.count} chunks (${Array.from(S.phases).join(", ")})`);process.stdout.write(y.join(` +`),process.exit(1));let o=i;if(!x.existsSync(r))return;let c=await v.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await v.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let y of l)d[y.work_unit]||(d[y.work_unit]=[]),d[y.work_unit].push(y);let f=[],h=[];for(let[y,S]of Object.entries(d)){let p=Zf(y);if(!p||p.status!=="completed"||!p.completed_at)continue;let _=qf(p.completed_at);if(!_||isNaN(_.getTime()))continue;let w=new Date(_);if(w.setMonth(w.getMonth()+o),w>a)continue;let b=S.filter(D=>D.phase!=="specification");if(b.length===0)continue;let A=new Set(b.map(D=>D.phase));f.push({workUnit:y,count:b.length,phases:A});for(let D of b)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((y,S)=>y+S.count,0);if(e.dryRun){let y=[];y.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let S of f)y.push(` \u2022 ${S.workUnit}: ${S.count} chunks (${Array.from(S.phases).join(", ")})`);process.stdout.write(y.join(` `)+` `);return}await v.withLock(s,async()=>{let y=await v.loadStore(r),S=new Set;for(let p of h){let _=`${p.work_unit}|${p.phase}|${p.topic}`;S.has(_)||(S.add(_),await v.removeByIdentity(y,p))}await v.saveStore(y,r)});let m=[];m.push(`Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let y of f)m.push(` \u2022 ${y.workUnit}: ${y.count} chunks (${Array.from(y.phases).join(", ")})`);process.stdout.write(m.join(` `)+` `)}async function bc(){let t=process.argv.slice(2),{positional:e,flags:n}=fc(t),r=e[0],s=e.slice(1),i=hc(n);r||(process.stderr.write(cc+` -`),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Be.loadConfig(),c=Be.resolveProvider(o)),r){case"index":await Bf(s,i,o,c);break;case"query":await Hf(s,i,o,c);break;case"check":await Gf(s,i,o,c);break;case"status":await Yf();break;case"remove":await Zf(s,i,o,c);break;case"compact":await eh(s,i,o,c);break;case"rebuild":await Jf(s,i,o,c);break;case"setup":await dc.cmdSetup(yn,s,i);break;default:process.stderr.write(`Unknown command "${r}". +`),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Be.loadConfig(),c=Be.resolveProvider(o)),r){case"index":await Bf(s,i,o,c);break;case"query":await Kf(s,i,o,c);break;case"check":await Hf(s,i,o,c);break;case"status":await Gf();break;case"remove":await Xf(s,i,o,c);break;case"compact":await Qf(s,i,o,c);break;case"rebuild":await Yf(s,i,o,c);break;case"setup":await dc.cmdSetup(yn,s,i);break;default:process.stderr.write(`Unknown command "${r}". ${cc} `),process.exit(1)}}module.exports={parseArgs:fc,buildOptions:hc,deriveIdentity:qr,resolveProviderState:pc,withRetry:lt,main:bc,cmdIndexBulk:yn,StubProvider:Uf,OpenAIProvider:Rf,store:v,chunker:lc,config:Be,setup:dc,knowledgeDir:ne,storePath:re,metadataPath:Z,lockFilePath:de,INDEXED_PHASES:Br,KEYWORD_ONLY_DIMENSIONS:$r};require.main===module&&bc().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` diff --git a/skills/workflow-manifest/scripts/manifest.cjs b/skills/workflow-manifest/scripts/manifest.cjs index 57f6a16c5..8a9ee17fa 100644 --- a/skills/workflow-manifest/scripts/manifest.cjs +++ b/skills/workflow-manifest/scripts/manifest.cjs @@ -43,9 +43,14 @@ const LOCK_TIMEOUT_MS = 10000; // Helpers // --------------------------------------------------------------------------- -function die(msg) { +// Exit-code convention: +// 1 — unexpected error (corrupt JSON, bad args, I/O, validation failure) +// 2 — expected miss (work unit / path / value not found) — callers that +// do best-effort lookups can distinguish this from real errors +// without pattern-matching the stderr text. +function die(msg, code = 1) { process.stderr.write(`Error: ${msg}\n`); - process.exit(1); + process.exit(code); } function manifestDir(name) { @@ -62,7 +67,7 @@ function lockPath(name) { function readManifest(name) { const p = manifestPath(name); - if (!fs.existsSync(p)) die(`Work unit "${name}" not found`); + if (!fs.existsSync(p)) die(`Work unit "${name}" not found`, 2); return JSON.parse(fs.readFileSync(p, 'utf8')); } @@ -288,7 +293,7 @@ function resolveSegments(phase, topic, fieldSegments) { function requireWorkUnit(workUnit) { if (!fs.existsSync(manifestPath(workUnit))) { - die(`Work unit "${workUnit}" not found`); + die(`Work unit "${workUnit}" not found`, 2); } } @@ -512,7 +517,7 @@ function cmdGet(args) { } const value = getByPath(manifest, proj.fieldSegments); if (value === undefined) { - die(`Path "${proj.fieldSegments.join('.')}" not found in project manifest`); + die(`Path "${proj.fieldSegments.join('.')}" not found in project manifest`, 2); } outputValue(value); return; @@ -530,7 +535,7 @@ function cmdGet(args) { const segments = args[1].split('.'); const value = getByPath(manifest, segments); if (value === undefined) { - die(`Path "${args[1]}" not found in "${workUnit}"`); + die(`Path "${args[1]}" not found in "${workUnit}"`, 2); } outputValue(value); return; @@ -543,7 +548,7 @@ function cmdGet(args) { if (topic === '*') { const results = resolveWildcardTopic(manifest, phase, fieldSegments); if (results.length === 0) { - die(`No items found in phase "${phase}" of "${workUnit}"`); + die(`No items found in phase "${phase}" of "${workUnit}"`, 2); } process.stdout.write(JSON.stringify(results, null, 2) + '\n'); return; @@ -552,7 +557,7 @@ function cmdGet(args) { const segments = resolvePhaseSegments(phase, topic, fieldSegments); const value = getByPath(manifest, segments); if (value === undefined) { - die(`Path "${segments.join('.')}" not found in "${workUnit}"`); + die(`Path "${segments.join('.')}" not found in "${workUnit}"`, 2); } outputValue(value); } @@ -604,7 +609,7 @@ function cmdDelete(args) { withProjectLock(() => { const manifest = readProjectManifest(); if (!deleteByPath(manifest, proj.fieldSegments)) { - die(`Path "${proj.fieldSegments.join('.')}" not found in project manifest`); + die(`Path "${proj.fieldSegments.join('.')}" not found in project manifest`, 2); } writeProjectManifestAtomic(manifest); }); @@ -623,7 +628,7 @@ function cmdDelete(args) { withLock(workUnit, () => { const manifest = readManifest(workUnit); if (!deleteByPath(manifest, segments)) { - die(`Path "${segments.join('.')}" not found in "${workUnit}"`); + die(`Path "${segments.join('.')}" not found in "${workUnit}"`, 2); } writeManifestAtomic(workUnit, manifest); }); @@ -892,10 +897,10 @@ function cmdProject(args) { const name = args[1]; if (!name) die('Usage: project get '); const projPath = path.join(WORKFLOWS_DIR, 'manifest.json'); - if (!fs.existsSync(projPath)) die(`Project manifest not found`); + if (!fs.existsSync(projPath)) die(`Project manifest not found`, 2); const proj = JSON.parse(fs.readFileSync(projPath, 'utf8')); const entry = (proj.work_units || {})[name]; - if (!entry) die(`Work unit "${name}" not found in project manifest`); + if (!entry) die(`Work unit "${name}" not found in project manifest`, 2); process.stdout.write(`work_type: ${entry.work_type}\n`); return; } @@ -921,7 +926,7 @@ function cmdKeyOf(args) { const key = Object.keys(obj).find(k => String(obj[k]) === searchValue); if (key === undefined) { - die(`Value "${searchValue}" not found in "${segments.join('.')}"`); + die(`Value "${searchValue}" not found in "${segments.join('.')}"`, 2); } process.stdout.write(key + '\n'); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index b53f7899f..1f9a094af 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -562,18 +562,16 @@ function runManifest(args) { } /** - * Distinguish expected "not found" errors from broken-manifest / corrupt-JSON + * Distinguish expected "not found" misses from broken-manifest / corrupt-JSON * / bad-path errors. Knowledge-base helpers swallow the former (lookups are * best-effort); the latter must be surfaced or bulk operations become silent * no-ops (deferred-issue #4). + * + * manifest.cjs uses exit code 2 for expected misses, 1 for real errors — + * stable and unambiguous. execFileSync surfaces the code on err.status. */ -function isManifestKeyNotFound(err) { - const s = err && err.stderr ? String(err.stderr) : ''; - return /not found|does not exist/i.test(s); -} - function reportUnexpectedManifestError(context, err) { - if (isManifestKeyNotFound(err)) return; + if (err && err.status === 2) return; const msg = err && err.stderr ? String(err.stderr).trim() : err.message; process.stderr.write(`Warning: manifest CLI failed in ${context}: ${msg}\n`); } diff --git a/tests/scripts/test-workflow-manifest.sh b/tests/scripts/test-workflow-manifest.sh index aff6fc589..f1fb18ed3 100755 --- a/tests/scripts/test-workflow-manifest.sh +++ b/tests/scripts/test-workflow-manifest.sh @@ -1192,7 +1192,7 @@ run_cli init-phase key-of-miss.planning.key-of-miss >/dev/null 2>&1 run_cli set key-of-miss.planning.key-of-miss task_map.t-1 ext-1 >/dev/null 2>&1 exit_code=$(run_cli_exit_code key-of key-of-miss.planning.key-of-miss task_map ext-notfound) -assert_equals "$exit_code" "1" "key-of errors when value not found" +assert_equals "$exit_code" "2" "key-of value-not-found exits 2 (expected miss)" echo "" @@ -1623,7 +1623,7 @@ echo -e "${YELLOW}Test: resolve errors for non-existent work unit${NC}" setup_fixture exit_code=$(run_cli_exit_code resolve nonexistent.discussion.foo) -assert_equals "$exit_code" "1" "Non-existent work unit exits 1" +assert_equals "$exit_code" "2" "Non-existent work unit exits 2 (expected miss)" echo "" @@ -1710,6 +1710,31 @@ assert_equals "$registered" "first-unit" "Manifest registers the first work unit echo "" +# ---------------------------------------------------------------------------- + +echo -e "${YELLOW}Test: exit codes distinguish expected miss (2) from real error (1)${NC}" +setup_fixture +# Missing work unit → expected miss → exit 2. +exit_code=$(run_cli_exit_code get nonexistent status) +assert_equals "$exit_code" "2" "Missing work unit → exit 2" + +run_cli init real --work-type feature --description "Real" >/dev/null 2>&1 +# Missing path inside existing manifest → expected miss → exit 2. +exit_code=$(run_cli_exit_code get real nonexistent_field) +assert_equals "$exit_code" "2" "Missing path in existing manifest → exit 2" + +# Invalid work_type → validation error → exit 1. +exit_code=$(run_cli_exit_code init bad --work-type bogus --description "x") +assert_equals "$exit_code" "1" "Invalid work-type → exit 1" + +# Corrupt manifest JSON → real error → exit 1. +mkdir -p "$TEST_DIR/.workflows/corrupt-wu" +echo "{not valid json" > "$TEST_DIR/.workflows/corrupt-wu/manifest.json" +exit_code=$(run_cli_exit_code get corrupt-wu status) +assert_equals "$exit_code" "1" "Corrupt work-unit JSON → exit 1" + +echo "" + # ============================================================================ # SUMMARY # ============================================================================ From 12140673d5e590a2e7b06831386e9d8b7093817f Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 16:31:42 +0100 Subject: [PATCH 23/78] fix(knowledge): split overloaded --work-unit flag into boost vs filter MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The flag --work-unit meant different things on different commands: knowledge query --work-unit X → re-rank BOOST (results from other work units still appear) knowledge remove --work-unit X → FILTER (only X's chunks are removed) Same spelling, opposite semantics. Docs explained it, but the flag name itself pattern-matched --phase / --topic / --work-type — all hard filters — so users naturally assumed query's --work-unit was a filter too. Split: - query now takes --prefer-work-unit (re-rank boost). The --prefer- prefix makes boost semantics obvious at the call site and cannot be confused with a filter. - remove keeps --work-unit (filter). Consistent with the other filter flags, which is how remove uses them anyway. No command has an overloaded flag. Skill files (contextual-query.md, knowledge-usage.md, SKILL.md) updated to use --prefer-work-unit. Test updated. Ledger #7 resolved properly this time. --- knowledge-base/deferred-issues.md | 6 +-- skills/workflow-knowledge/SKILL.md | 6 +-- .../references/contextual-query.md | 4 +- .../references/knowledge-usage.md | 2 +- .../workflow-knowledge/scripts/knowledge.cjs | 41 ++++++++++--------- src/knowledge/index.js | 31 ++++++++------ tests/scripts/test-knowledge-cli.sh | 4 +- 7 files changed, 51 insertions(+), 43 deletions(-) diff --git a/knowledge-base/deferred-issues.md b/knowledge-base/deferred-issues.md index e7f063ae9..91b25fba2 100644 --- a/knowledge-base/deferred-issues.md +++ b/knowledge-base/deferred-issues.md @@ -50,11 +50,11 @@ Items below marked **RESOLVED** were addressed during the pre-merge cleanup pass **Description:** N node processes spawned for N spec topics. Status slow on repos with many specs (~5s for 50 topics). **Mitigation:** Cache full manifest once per status invocation; read spec statuses from the cached object. -### 7. `--work-unit` filter vs boost semantics — Low (UX) — **DOC-ONLY** +### 7. `--work-unit` filter vs boost semantics — Low (UX) — **RESOLVED** **Location:** `src/knowledge/index.js` `cmdQuery`. -**Description:** `--work-unit` is a re-rank proximity boost, not a hard filter. Inconsistent with `--phase`/`--work-type`/`--topic` which are filters. -**Status:** Code behaviour deliberately preserved (cross-work-unit context is the point of the KB). `SKILL.md` lines 61 + 134 document the boost semantics explicitly. Any CLI-level split (`--boost-work-unit` vs `--filter-work-unit`) is a scope-expanding redesign, kept deferred. +**Description:** `--work-unit` was a re-rank proximity boost on `query` but a hard filter on `remove` — same flag name, opposite semantics. Inconsistent with `--phase`/`--work-type`/`--topic` (all filters). Docs alone weren't enough; the flag spelling itself invited misuse. +**Resolution:** Split into two distinctly-named flags. `query` now takes `--prefer-work-unit` for the boost behaviour; `remove` keeps `--work-unit` as a filter. No single spelling overloaded across commands, and the `--prefer-` prefix makes the re-ranking semantics obvious at the call site. Skill files and tests updated. ### 8. Migration `report_update` called unconditionally — Low — **WITHDRAWN** diff --git a/skills/workflow-knowledge/SKILL.md b/skills/workflow-knowledge/SKILL.md index 27df96692..d6d594166 100644 --- a/skills/workflow-knowledge/SKILL.md +++ b/skills/workflow-knowledge/SKILL.md @@ -58,7 +58,7 @@ Multiple positional arguments run separate searches in one invocation, merge the | `--work-type ` | Filter results to a work type. Comma-separated list accepted (e.g., `--work-type cross-cutting` or `--work-type epic,feature`). Hard filter — non-matching chunks are excluded | | `--phase ` | Filter to one or more phases. Same comma-separated syntax. Hard filter | | `--topic ` | Filter to one or more topics. Same comma-separated syntax. Hard filter | -| `--work-unit ` | **Re-ranking hint, NOT a filter.** Boosts chunks from this work unit in post-processing. Cross-work-unit results still appear, just ranked lower. Use it to say "I'm currently working in `auth-flow`, prefer its context" — not to exclude other work | +| `--prefer-work-unit ` | **Re-ranking hint, NOT a filter.** Boosts chunks from this work unit in post-processing. Cross-work-unit results still appear, just ranked lower. Use it to say "I'm currently working in `auth-flow`, prefer its context" — not to exclude other work. Distinct from `--work-unit` on `remove`, which IS a filter | | `--limit ` | Cap result count after merge + re-rank. Default 10 | ### Search modes @@ -130,8 +130,8 @@ Don't read source files for every result. Most queries produce a couple of chunk - **Do not dump large result sets speculatively.** `--limit 50` with a vague query produces noise. Prefer a focused query with the default limit. - **Do not use topic slugs as search terms.** `"auth-flow"` is a weak semantic signal. Describe the thing, don't name it. - **Do not query during the specification phase.** Spec turns discussion decisions into a golden document. Cross-cutting concerns merge at planning time via an explicit cross-cutting query, not during spec authoring. Querying mid-spec pulls the spec away from its own source material. -- **Do not prepend metadata to the query string.** The CLI already filters by `work_type`, `phase`, `topic`, `work_unit` via flags. `"auth-flow specification UUID identity"` is worse than `"UUID identity"` with `--phase specification`. -- **Do not treat `--work-unit` as a filter.** It re-ranks. If you want to exclude other work units, you probably don't — cross-work-unit context is the point of the knowledge base. +- **Do not prepend metadata to the query string.** The CLI already filters by `work_type`, `phase`, `topic` via flags. `"auth-flow specification UUID identity"` is worse than `"UUID identity"` with `--phase specification`. +- **`--prefer-work-unit` boosts, it does not filter.** If you truly want to exclude other work units, you probably don't — cross-work-unit context is the point of the knowledge base. There is no hard-filter equivalent on `query` by design. --- diff --git a/skills/workflow-knowledge/references/contextual-query.md b/skills/workflow-knowledge/references/contextual-query.md index 3389a9e71..71b41d430 100644 --- a/skills/workflow-knowledge/references/contextual-query.md +++ b/skills/workflow-knowledge/references/contextual-query.md @@ -18,10 +18,10 @@ If the only context available is a topic name, construct the best descriptive qu ## B. Run the query -Invoke the CLI with the constructed query (or queries). Use `--work-unit {work_unit}` to bias results toward the current work unit without filtering out cross-work-unit context. Do not use hard filters unless you have a specific reason — this is meant to surface prior work broadly. +Invoke the CLI with the constructed query (or queries). Use `--prefer-work-unit {work_unit}` to bias results toward the current work unit without filtering out cross-work-unit context. Do not use hard filters unless you have a specific reason — this is meant to surface prior work broadly. ``` -node .claude/skills/workflow-knowledge/scripts/knowledge.cjs query "" --work-unit {work_unit} +node .claude/skills/workflow-knowledge/scripts/knowledge.cjs query "" --prefer-work-unit {work_unit} ``` #### If the command exits with a non-zero code diff --git a/skills/workflow-knowledge/references/knowledge-usage.md b/skills/workflow-knowledge/references/knowledge-usage.md index ede87d3c1..415b169cf 100644 --- a/skills/workflow-knowledge/references/knowledge-usage.md +++ b/skills/workflow-knowledge/references/knowledge-usage.md @@ -25,7 +25,7 @@ Multiple queries from different angles are expected and encouraged. One query fo ## B. How to construct queries -Use **natural language** describing what you're looking for — not topic slugs, which are weak semantic signal. Filter with `--work-type`, `--phase`, `--topic`; bias toward the current work unit with `--work-unit` (a re-rank hint, not a filter). For multiple angles in one invocation, pass multiple positional terms (batch query). +Use **natural language** describing what you're looking for — not topic slugs, which are weak semantic signal. Filter with `--work-type`, `--phase`, `--topic`; bias toward the current work unit with `--prefer-work-unit` (a re-rank hint, not a filter). For multiple angles in one invocation, pass multiple positional terms (batch query). See **[SKILL.md](../SKILL.md)** — query construction examples and the full flag table. diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index ea836107b..26e8b5f2e 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var I=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var ft=I(K=>{"use strict";Object.defineProperty(K,"__esModule",{value:!0});K.SUPPORTED_LANGUAGES=K.SPLITTERS=K.STEMMERS=void 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Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function Rr(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function Af(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(B.existsSync(t))try{r=Rr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ot.dirname(t);B.existsSync(o)||B.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=B.openSync(c,"w",384);try{B.writeSync(a,JSON.stringify(i,null,2)+` -`)}finally{B.closeSync(a)}B.chmodSync(c,384),B.renameSync(c,t);try{B.chmodSync(t,384)}catch{}}function $o(t,e){if(!t)return null;let n=jo[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Bo(),s;try{s=Rr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function Tf(t){let e=t&&t.systemPath||Co(),n=t&&t.projectPath||Fo(),r=Ur(e),s=Ur(n),i=Object.assign({},Lo);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=$o(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function Df(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Ef(n!=null?{dimensions:n}:void 0)}if(!Nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new vf({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function Mf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` -`,"utf8"),B.renameSync(r,t)}qo.exports={DEFAULTS:Lo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:jo,systemConfigPath:Co,projectConfigPath:Fo,credentialsPath:Bo,readConfigFile:Ur,loadConfig:Tf,loadCredentials:Rr,writeCredentials:Af,resolveApiKey:$o,resolveProvider:Df,writeConfigFile:Mf}});var ic=I((dp,sc)=>{"use strict";var Ie=require("fs"),xe=require("path"),kf=require("readline"),$=Lr(),jr=Mr(),{OpenAIProvider:Of}=dn(),zo="text-embedding-3-small",Vo=1536,Wo=1536;function Ko(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. -`),process.exit(1))}function Ho(){let t=kf.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` +`).trim()===""}Do.exports={chunk:mf}});var Or=I((ap,Oo)=>{"use strict";var Mo="stub";function If(t){let e=2166136261;for(let n=0;n>>0}function xf(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var Mr=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=If(n)||1,s=xf(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Po="text-embedding-3-small",No="https://api.openai.com/v1/embeddings",Pr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Po,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions});return[...(await this._fetch(r)).data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-u.index);for(let a=0;a{"use strict";var B=require("fs"),ot=require("path"),Ro=require("os"),{StubProvider:Ef}=Or(),{OpenAIProvider:vf}=dn(),Lo={similarity_threshold:.8,decay_months:6},Nr=["stub","openai"],jo={openai:"OPENAI_API_KEY"};function Co(){return ot.join(Ro.homedir(),".config","workflows","config.json")}function Fo(t){return ot.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Bo(){return ot.join(Ro.homedir(),".config","workflows","credentials.json")}function Ur(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function Rr(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function Af(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(B.existsSync(t))try{r=Rr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ot.dirname(t);B.existsSync(o)||B.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=B.openSync(c,"w",384);try{B.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{B.closeSync(a)}B.chmodSync(c,384),B.renameSync(c,t);try{B.chmodSync(t,384)}catch{}}function $o(t,e){if(!t)return null;let n=jo[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Bo(),s;try{s=Rr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function Tf(t){let e=t&&t.systemPath||Co(),n=t&&t.projectPath||Fo(),r=Ur(e),s=Ur(n),i=Object.assign({},Lo);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=$o(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function Df(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Ef(n!=null?{dimensions:n}:void 0)}if(!Nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new vf({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function kf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),B.renameSync(r,t)}qo.exports={DEFAULTS:Lo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:jo,systemConfigPath:Co,projectConfigPath:Fo,credentialsPath:Bo,readConfigFile:Ur,loadConfig:Tf,loadCredentials:Rr,writeCredentials:Af,resolveApiKey:$o,resolveProvider:Df,writeConfigFile:kf}});var ic=I((dp,sc)=>{"use strict";var Ie=require("fs"),xe=require("path"),Mf=require("readline"),$=Lr(),jr=kr(),{OpenAIProvider:Of}=dn(),zo="text-embedding-3-small",Vo=1536,Wo=1536;function Ko(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function Ho(){let t=Mf.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. `),t.close(),process.exit(130)}),t}function fn(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Go(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` `||l==="\r")return c(),s.write(` @@ -120,10 +120,10 @@ Knowledge base setup Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}sc.exports={cmdSetup:Nf,requireTTY:Ko,createPrompter:Ho,ask:fn,askYesNo:Fe,askSecret:Go,buildSystemConfigOpenAI:Yo,buildSystemConfigStub:Jo,buildProjectConfigEmpty:Xo,detectSystemConfig:Zo,detectProjectInit:Qo,validateApiKey:hn,describeValidationError:pn,ensureOpenAIKey:tc,runSystemConfigStep:ec,runProjectInitStep:nc,runInitialIndexStep:rc,KEYWORD_ONLY_DIMENSIONS:Wo,OPENAI_DEFAULT_MODEL:zo,OPENAI_DEFAULT_DIMENSIONS:Vo}});var x=require("fs"),z=require("path"),v=Mr(),lc=Mo(),{StubProvider:Uf}=Or(),{OpenAIProvider:Rf}=dn(),Be=Lr(),dc=ic(),Br=["research","discussion","investigation","specification"],Lf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(x.existsSync(t))return t;if(x.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}sc.exports={cmdSetup:Nf,requireTTY:Ko,createPrompter:Ho,ask:fn,askYesNo:Fe,askSecret:Go,buildSystemConfigOpenAI:Yo,buildSystemConfigStub:Jo,buildProjectConfigEmpty:Xo,detectSystemConfig:Zo,detectProjectInit:Qo,validateApiKey:hn,describeValidationError:pn,ensureOpenAIKey:tc,runSystemConfigStep:ec,runProjectInitStep:nc,runInitialIndexStep:rc,KEYWORD_ONLY_DIMENSIONS:Wo,OPENAI_DEFAULT_MODEL:zo,OPENAI_DEFAULT_DIMENSIONS:Vo}});var x=require("fs"),z=require("path"),v=kr(),lc=ko(),{StubProvider:Uf}=Or(),{OpenAIProvider:Rf}=dn(),Be=Lr(),dc=ic(),Br=["research","discussion","investigation","specification"],Lf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(x.existsSync(t))return t;if(x.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),ut=[1e3,2e3,4e3],jf=5,Cr=10,$r=1536,oc=!1;function fc(t){let e=[],n={},r=0;for(;r [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),ut=[1e3,2e3,4e3],jf=5,Cr=10,$r=1536,oc=!1;function fc(t){let e=[],n={},r=0;for(;r [options] Commands: index Index a file or all pending artifacts @@ -136,12 +136,13 @@ Commands: setup Interactive setup wizard Options: - --work-type Filter by work type - --work-unit Re-rank boost for this work unit (not a filter) - --phase Filter by phase - --topic Filter by topic - --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function Z(){return z.join(ne(),"metadata.json")}function de(){return z.join(ne(),".lock")}function Cf(t){return new Promise(e=>setTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;i Filter by work type + --work-unit Filter by work unit (for remove) + --prefer-work-unit Re-rank boost toward this work unit (for query) + --phase Filter by phase + --topic Filter by topic + --limit Limit number of results + --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function Z(){return z.join(ne(),"metadata.json")}function de(){return z.join(ne(),".lock")}function Cf(t){return new Promise(e=>setTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;i{let i;x.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});v.writeMetadata(n,i)})}async function gn(t){let e=Z(),n=de();x.existsSync(e)&&await v.withLock(n,async()=>{if(!x.existsSync(e))return;let r=v.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),v.writeMetadata(e,r))})}async function mc(t,e,n){let r=Z();if(!x.existsSync(r))return;let s=v.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=Cr){process.stderr.write(`Pending item ${o.file} exceeded ${Cr} attempts \u2014 evicting. Last error: ${o.error} `),await gn(o.file);continue}let c=z.resolve(o.file);if(!x.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. -`),await gn(o.file);continue}let a;try{a=qr(o.file)}catch{await gn(o.file);continue}try{await lt(()=>zr(o.file,a,t,e),{maxAttempts:3,backoff:ut}),await gn(o.file)}catch(u){await yc(o.file,u.message)}}}var Fr=10;function Me(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function wc(t,e){let n=Z(),r=ne(),s=de();x.existsSync(r)||x.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;x.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=Me(t),c=i.pending_removals.findIndex(u=>Me(u)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let u=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(u.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});v.writeMetadata(n,i)})}async function ac(t){let e=Z(),n=de();x.existsSync(e)&&await v.withLock(n,async()=>{if(!x.existsSync(e))return;let r=v.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=Me(t);r.pending_removals=r.pending_removals.filter(i=>Me(i)!==s),v.writeMetadata(e,r)})}async function _c(){let t=Z();if(!x.existsSync(t))return;let e=v.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=Fr){process.stderr.write(`Pending removal for ${Me(r)} exceeded ${Fr} attempts \u2014 evicting. -`),await ac(r);continue}try{await Sc({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${Me(r)}. +`),await gn(o.file);continue}let a;try{a=qr(o.file)}catch{await gn(o.file);continue}try{await lt(()=>zr(o.file,a,t,e),{maxAttempts:3,backoff:ut}),await gn(o.file)}catch(u){await yc(o.file,u.message)}}}var Fr=10;function ke(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function wc(t,e){let n=Z(),r=ne(),s=de();x.existsSync(r)||x.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;x.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ke(t),c=i.pending_removals.findIndex(u=>ke(u)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let u=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(u.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});v.writeMetadata(n,i)})}async function ac(t){let e=Z(),n=de();x.existsSync(e)&&await v.withLock(n,async()=>{if(!x.existsSync(e))return;let r=v.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ke(t);r.pending_removals=r.pending_removals.filter(i=>ke(i)!==s),v.writeMetadata(e,r)})}async function _c(){let t=Z();if(!x.existsSync(t))return;let e=v.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=Fr){process.stderr.write(`Pending removal for ${ke(r)} exceeded ${Fr} attempts \u2014 evicting. +`),await ac(r);continue}try{await Sc({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ke(r)}. `),await ac(r)}catch(s){try{await wc({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Sc(t){let e=re(),n=de();if(!x.existsSync(e))return 0;let r=0;return await v.withLock(n,async()=>{let s=await v.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await v.removeByFilter(s,i),await v.saveStore(s,e)}),r}var $f={high:4,medium:3,"low-medium":2,low:1};function qf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function zf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}function Vf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;e&&i.work_unit===e&&(o+=.1);let c=$f[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Wf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} - Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Kf(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N] + Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Kf(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--phase ...] [--work-type ...] [--prefer-work-unit ...] [--topic ...] [--limit N] `),process.exit(1));let s=t,i=e.limit||10,o=re(),c=Z();if(!x.existsSync(o)){process.stdout.write(`[0 results] -`);return}let a=await v.loadStore(o),u="keyword-only",l=null,d=null;x.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=v.readMetadata(c),h=Wf(f,n,r);u=h.mode,l=h.provider,u==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":u==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let w=e.phase.split(",").map(b=>b.trim());g.phase=w.length===1?{eq:w[0]}:{in:w}}if(e.workType){let w=e.workType.split(",").map(b=>b.trim());g.work_type=w.length===1?{eq:w[0]}:{in:w}}if(e.topic){let w=e.topic.split(",").map(b=>b.trim());g.topic=w.length===1?{eq:w[0]}:{in:w}}let m=n.similarity_threshold||.8,y=Object.keys(g).length>0?g:void 0,S=new Map;for(let w of s){let b;if(u==="full"&&l){let A=await lt(()=>l.embed(w),{maxAttempts:3,backoff:ut});b=await v.searchHybrid(a,{term:w,vector:A,where:y,limit:i*2,similarity:m})}else b=await v.searchFulltext(a,{term:w,where:y,limit:i*2});for(let A of b){let D=S.get(A.id);(!D||A.score>D.score)&&S.set(A.id,A)}}let p=Vf(Array.from(S.values()),e.workUnit);p.length>i&&(p=p.slice(0,i));let _=[];d&&_.push(d),_.push(`[${p.length} results]`);for(let w of p){_.push("");let b=zf(w.timestamp);_.push(`[${w.phase} | ${w.work_unit}/${w.topic} | ${w.confidence} | ${b}]`),_.push(w.content),_.push(`Source: ${w.source_file}`)}process.stdout.write(_.join(` +`);return}let a=await v.loadStore(o),u="keyword-only",l=null,d=null;x.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=v.readMetadata(c),h=Wf(f,n,r);u=h.mode,l=h.provider,u==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":u==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let g={};if(e.phase){let w=e.phase.split(",").map(b=>b.trim());g.phase=w.length===1?{eq:w[0]}:{in:w}}if(e.workType){let w=e.workType.split(",").map(b=>b.trim());g.work_type=w.length===1?{eq:w[0]}:{in:w}}if(e.topic){let w=e.topic.split(",").map(b=>b.trim());g.topic=w.length===1?{eq:w[0]}:{in:w}}let m=n.similarity_threshold||.8,y=Object.keys(g).length>0?g:void 0,S=new Map;for(let w of s){let b;if(u==="full"&&l){let A=await lt(()=>l.embed(w),{maxAttempts:3,backoff:ut});b=await v.searchHybrid(a,{term:w,vector:A,where:y,limit:i*2,similarity:m})}else b=await v.searchFulltext(a,{term:w,where:y,limit:i*2});for(let A of b){let D=S.get(A.id);(!D||A.score>D.score)&&S.set(A.id,A)}}let p=Vf(Array.from(S.values()),e.preferWorkUnit);p.length>i&&(p=p.slice(0,i));let _=[];d&&_.push(d),_.push(`[${p.length} results]`);for(let w of p){_.push("");let b=zf(w.timestamp);_.push(`[${w.phase} | ${w.work_unit}/${w.topic} | ${w.confidence} | ${b}]`),_.push(w.content),_.push(`Source: ${w.source_file}`)}process.stdout.write(_.join(` `)+` `)}async function Hf(){let t=ne(),e=z.join(t,"config.json"),n=re();if(!x.existsSync(t)){process.stdout.write(`not-ready `);return}if(!x.existsSync(e)){process.stdout.write(`not-ready @@ -175,7 +176,7 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `);return}process.stdout.write(`ready `)}async function Gf(){let t=ne(),e=re(),n=Z(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!x.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await v.loadStore(e),i=await v.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,_]of Object.entries(o))r.push(` ${p}: ${_}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,_]of Object.entries(c))r.push(` ${p}: ${_}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,_]of Object.entries(a))r.push(` ${p}: ${_}`)}r.push("");let l=(x.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),x.existsSync(n)){let p=v.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let b=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${b}/${Cr}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${Me(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${Fr})`)}let _;try{_=Be.loadConfig()}catch{_=null}if(_){let w=Be.resolveProvider(_);p.provider&&w&&(p.provider!==_.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),x.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=Vr(),_=[];for(let w of p)await gc(s,w.workUnit,w.phase,w.topic)||_.push(w.file);if(_.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${_.length}`);for(let w of _)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} +`);return}let s=await v.loadStore(e),i=await v.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,_]of Object.entries(o))r.push(` ${p}: ${_}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,_]of Object.entries(c))r.push(` ${p}: ${_}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,_]of Object.entries(a))r.push(` ${p}: ${_}`)}r.push("");let l=(x.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${l} KB`),x.existsSync(n)){let p=v.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let b=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${b}/${Cr}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${ke(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${Fr})`)}let _;try{_=Be.loadConfig()}catch{_=null}if(_){let w=Be.resolveProvider(_);p.provider&&w&&(p.provider!==_.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),x.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=Vr(),_=[];for(let w of p)await gc(s,w.workUnit,w.phase,w.topic)||_.push(w.file);if(_.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${_.length}`);for(let w of _)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} `)}let h=[],g=null;try{g=JSON.parse(ct(["list"]))}catch(p){at("cmdStatus:list",p)}let m=new Map;if(Array.isArray(g))for(let p of g)p&&p.name&&m.set(p.name,p);for(let p of Object.keys(o)){let _=m.get(p);_&&_.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let y=i.filter(p=>p.phase==="specification"),S=new Set(y.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of S){let[_,,w]=p.split("."),b=m.get(_);if(!b||!b.phases||!b.phases.specification||!b.phases.specification.items)continue;let A=b.phases.specification.items[w];A&&A.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` `)}async function Yf(t,e,n,r){let s=re(),i=Z(),o=de();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 1f9a094af..a36dc41e6 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -95,7 +95,13 @@ function buildOptions(flags) { return { workType: flags['work-type'] || null, phase: flags['phase'] || null, + // `remove` uses this as a filter ("what to delete"). The filter semantics + // match --phase / --topic / --work-type, so the name is consistent. workUnit: flags['work-unit'] || null, + // `query` uses this as a re-rank boost ("bias results toward this work + // unit, don't filter out cross-work-unit hits"). Separate flag name so + // boost and filter never share a spelling. + preferWorkUnit: flags['prefer-work-unit'] || null, topic: flags['topic'] || null, limit: flags['limit'] ? parseInt(flags['limit'], 10) : null, dryRun: flags['dry-run'] === true || flags['dry-run'] === 'true', @@ -119,12 +125,13 @@ Commands: setup Interactive setup wizard Options: - --work-type Filter by work type - --work-unit Re-rank boost for this work unit (not a filter) - --phase Filter by phase - --topic Filter by topic - --limit Limit number of results - --dry-run Preview without making changes`; + --work-type Filter by work type + --work-unit Filter by work unit (for remove) + --prefer-work-unit Re-rank boost toward this work unit (for query) + --phase Filter by phase + --topic Filter by topic + --limit Limit number of results + --dry-run Preview without making changes`; // --------------------------------------------------------------------------- // Path helpers @@ -1064,7 +1071,7 @@ function resolveQueryMode(metadata, cfg, provider) { async function cmdQuery(args, options, cfg, provider) { if (args.length === 0) { - process.stderr.write('Usage: knowledge query [...] [--phase ...] [--work-type ...] [--work-unit ...] [--limit N]\n'); + process.stderr.write('Usage: knowledge query [...] [--phase ...] [--work-type ...] [--prefer-work-unit ...] [--topic ...] [--limit N]\n'); process.exit(1); } @@ -1100,9 +1107,9 @@ async function cmdQuery(args, options, cfg, provider) { stubNote = '[keyword-only mode but embedding provider configured — run knowledge rebuild for full hybrid search]'; } - // Build where clause from filters. --work-unit is NOT a filter — it's a - // re-rank proximity hint used after search, so other work units can still - // appear in results but rank lower. + // Build where clause from hard filters. --prefer-work-unit is NOT here — + // it's a re-rank proximity hint applied after search, so other work units + // can still appear in results but rank lower. const where = {}; if (options.phase) { const phases = options.phase.split(',').map((s) => s.trim()); @@ -1154,8 +1161,8 @@ async function cmdQuery(args, options, cfg, provider) { } } - // Re-rank merged results. - let results = rerank(Array.from(allResults.values()), options.workUnit); + // Re-rank merged results using the boost hint (--prefer-work-unit). + let results = rerank(Array.from(allResults.values()), options.preferWorkUnit); if (results.length > limit) { results = results.slice(0, limit); diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 335e821e1..f5be3e47a 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -608,8 +608,8 @@ Line 48. Line 49. Line 50. Line 51. Line 52. Line 53. MD run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 run_kb index .workflows/data-model/discussion/data-model.md >/dev/null 2>&1 -# Query with --work-unit auth-flow: auth-flow results should appear first. -output=$(run_kb query "token refresh" --work-unit auth-flow --limit 2 2>&1) +# Query with --prefer-work-unit auth-flow: auth-flow results should appear first. +output=$(run_kb query "token refresh" --prefer-work-unit auth-flow --limit 2 2>&1) # Extract the first provenance line's work_unit. first_wu=$(echo "$output" | grep -m1 '^\[discussion' | sed 's/.*| \([^/]*\)\/.*/\1/') assert_eq "boosted work-unit appears first" "auth-flow" "$first_wu" From 3c3dee05c6df929b96410be49984636a07e45724 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 16:55:51 +0100 Subject: [PATCH 24/78] feat(knowledge): --work-unit becomes a filter, --boost: re-ranks Makes the query-command CLI fully orthogonal: Filters (hard; non-matching chunks excluded): --work-unit --work-type --phase --topic Re-ranking (additive, +0.1 per match, repeat for multi-dim): --boost: valid fields: work-unit, work-type, phase, topic, confidence Replaces the prior split where --work-unit was a boost on query but a filter on remove, and the short-lived --prefer-work-unit from this stack's last attempt. Skill templates can now compose multi-dimensional bias in a single invocation that wasn't expressible before, e.g. knowledge query "foo" --boost:work-unit {wu} --boost:phase research which surfaces prior research across work units while nudging results toward the current one. Parser: anything matching --boost: is collected into an ordered list; validation runs at command entry and fails fast on unknown field or missing value. Skill templates don't silently no-op on typos. Schema mapping: CLI uses kebab-case (--boost:work-unit) consistent with the existing filter flags; mapped to the snake_case schema field (work_unit) internally. Callers updated: SKILL.md (flag table + guidance), contextual-query.md, knowledge-usage.md. Four new tests cover: boost ordering vs cross-wu context, --work-unit as filter, unknown-field error, missing-value error. --- knowledge-base/deferred-issues.md | 4 +- skills/workflow-knowledge/SKILL.md | 11 +- .../references/contextual-query.md | 4 +- .../references/knowledge-usage.md | 2 +- .../workflow-knowledge/scripts/knowledge.cjs | 152 +++++++++--------- src/knowledge/index.js | 129 +++++++++++---- tests/scripts/test-knowledge-cli.sh | 64 +++++++- 7 files changed, 252 insertions(+), 114 deletions(-) diff --git a/knowledge-base/deferred-issues.md b/knowledge-base/deferred-issues.md index 91b25fba2..f0cd8147b 100644 --- a/knowledge-base/deferred-issues.md +++ b/knowledge-base/deferred-issues.md @@ -52,9 +52,9 @@ Items below marked **RESOLVED** were addressed during the pre-merge cleanup pass ### 7. `--work-unit` filter vs boost semantics — Low (UX) — **RESOLVED** -**Location:** `src/knowledge/index.js` `cmdQuery`. +**Location:** `src/knowledge/index.js` `cmdQuery`, `cmdRemove`. **Description:** `--work-unit` was a re-rank proximity boost on `query` but a hard filter on `remove` — same flag name, opposite semantics. Inconsistent with `--phase`/`--work-type`/`--topic` (all filters). Docs alone weren't enough; the flag spelling itself invited misuse. -**Resolution:** Split into two distinctly-named flags. `query` now takes `--prefer-work-unit` for the boost behaviour; `remove` keeps `--work-unit` as a filter. No single spelling overloaded across commands, and the `--prefer-` prefix makes the re-ranking semantics obvious at the call site. Skill files and tests updated. +**Resolution:** Fully orthogonal CLI — every `--` flag is a hard filter on every command that accepts it (`--work-unit`, `--work-type`, `--phase`, `--topic`). Re-ranking happens exclusively through `--boost: `, which is repeatable, composable across dimensions, and validated against a fixed set of fields (`work-unit`, `work-type`, `phase`, `topic`, `confidence`). `+0.1` per match, additive. Unknown field or missing value → fail-fast error. Skill templates can now compose multi-dimensional bias (e.g. `--boost:work-unit auth-flow --boost:phase research`) that wasn't expressible before. ### 8. Migration `report_update` called unconditionally — Low — **WITHDRAWN** diff --git a/skills/workflow-knowledge/SKILL.md b/skills/workflow-knowledge/SKILL.md index d6d594166..5f3f72180 100644 --- a/skills/workflow-knowledge/SKILL.md +++ b/skills/workflow-knowledge/SKILL.md @@ -55,17 +55,18 @@ Multiple positional arguments run separate searches in one invocation, merge the | Flag | Behaviour | |------|-----------| -| `--work-type ` | Filter results to a work type. Comma-separated list accepted (e.g., `--work-type cross-cutting` or `--work-type epic,feature`). Hard filter — non-matching chunks are excluded | +| `--work-unit ` | Filter to one or more work units. Comma-separated list accepted. Hard filter — non-matching chunks excluded | +| `--work-type ` | Filter results to a work type. Comma-separated list accepted (e.g., `--work-type cross-cutting` or `--work-type epic,feature`). Hard filter | | `--phase ` | Filter to one or more phases. Same comma-separated syntax. Hard filter | | `--topic ` | Filter to one or more topics. Same comma-separated syntax. Hard filter | -| `--prefer-work-unit ` | **Re-ranking hint, NOT a filter.** Boosts chunks from this work unit in post-processing. Cross-work-unit results still appear, just ranked lower. Use it to say "I'm currently working in `auth-flow`, prefer its context" — not to exclude other work. Distinct from `--work-unit` on `remove`, which IS a filter | +| `--boost: ` | **Re-ranking hint, NOT a filter.** Boosts chunks where `` equals `` by `+0.1` per match, additive. Repeatable. Valid fields: `work-unit`, `work-type`, `phase`, `topic`, `confidence`. Use it to say "I'm currently working in `auth-flow`, prefer its context" via `--boost:work-unit auth-flow` — results from other work units still appear, just ranked lower | | `--limit ` | Cap result count after merge + re-rank. Default 10 | ### Search modes Two modes, auto-selected based on project config: -- **Hybrid** (default when an embedding provider is configured): keyword + vector search combined, results re-ranked by work-unit proximity, confidence tier, and recency. +- **Hybrid** (default when an embedding provider is configured): keyword + vector search combined, results re-ranked by any `--boost:` directives you pass, plus always-on confidence-tier and recency signals. - **Keyword-only** (when no provider is configured): full-text search only. Still useful — you lose semantic expansion but exact-term queries work. The output prepends a note: `[keyword-only mode — configure embedding provider for semantic search]`. This is a supported degraded mode, not a broken state. ### Query construction @@ -130,8 +131,8 @@ Don't read source files for every result. Most queries produce a couple of chunk - **Do not dump large result sets speculatively.** `--limit 50` with a vague query produces noise. Prefer a focused query with the default limit. - **Do not use topic slugs as search terms.** `"auth-flow"` is a weak semantic signal. Describe the thing, don't name it. - **Do not query during the specification phase.** Spec turns discussion decisions into a golden document. Cross-cutting concerns merge at planning time via an explicit cross-cutting query, not during spec authoring. Querying mid-spec pulls the spec away from its own source material. -- **Do not prepend metadata to the query string.** The CLI already filters by `work_type`, `phase`, `topic` via flags. `"auth-flow specification UUID identity"` is worse than `"UUID identity"` with `--phase specification`. -- **`--prefer-work-unit` boosts, it does not filter.** If you truly want to exclude other work units, you probably don't — cross-work-unit context is the point of the knowledge base. There is no hard-filter equivalent on `query` by design. +- **Do not prepend metadata to the query string.** The CLI already filters by `work-unit`, `work-type`, `phase`, `topic` via flags. `"auth-flow specification UUID identity"` is worse than `"UUID identity"` with `--phase specification`. +- **Reach for `--boost:` before `--work-unit`.** Filtering by work unit excludes cross-work-unit context — usually the opposite of what you want. `--boost:work-unit ` nudges results toward your current work unit while keeping prior work from other units in the pool. Stack multiple boosts (`--boost:work-unit X --boost:phase specification`) when your query wants multi-dimensional preference, not exclusion. --- diff --git a/skills/workflow-knowledge/references/contextual-query.md b/skills/workflow-knowledge/references/contextual-query.md index 71b41d430..5db7179cc 100644 --- a/skills/workflow-knowledge/references/contextual-query.md +++ b/skills/workflow-knowledge/references/contextual-query.md @@ -18,10 +18,10 @@ If the only context available is a topic name, construct the best descriptive qu ## B. Run the query -Invoke the CLI with the constructed query (or queries). Use `--prefer-work-unit {work_unit}` to bias results toward the current work unit without filtering out cross-work-unit context. Do not use hard filters unless you have a specific reason — this is meant to surface prior work broadly. +Invoke the CLI with the constructed query (or queries). Use `--boost:work-unit {work_unit}` to bias results toward the current work unit without filtering out cross-work-unit context. Do not use hard filters (`--work-unit`, `--phase`, `--topic`, `--work-type`) unless you have a specific reason — this is meant to surface prior work broadly. ``` -node .claude/skills/workflow-knowledge/scripts/knowledge.cjs query "" --prefer-work-unit {work_unit} +node .claude/skills/workflow-knowledge/scripts/knowledge.cjs query "" --boost:work-unit {work_unit} ``` #### If the command exits with a non-zero code diff --git a/skills/workflow-knowledge/references/knowledge-usage.md b/skills/workflow-knowledge/references/knowledge-usage.md index 415b169cf..04723d74c 100644 --- a/skills/workflow-knowledge/references/knowledge-usage.md +++ b/skills/workflow-knowledge/references/knowledge-usage.md @@ -25,7 +25,7 @@ Multiple queries from different angles are expected and encouraged. One query fo ## B. How to construct queries -Use **natural language** describing what you're looking for — not topic slugs, which are weak semantic signal. Filter with `--work-type`, `--phase`, `--topic`; bias toward the current work unit with `--prefer-work-unit` (a re-rank hint, not a filter). For multiple angles in one invocation, pass multiple positional terms (batch query). +Use **natural language** describing what you're looking for — not topic slugs, which are weak semantic signal. Filter with `--work-unit`, `--work-type`, `--phase`, `--topic` (hard filters — non-matching chunks excluded). Bias results with `--boost: ` (re-rank hint; repeatable; valid fields: `work-unit`, `work-type`, `phase`, `topic`, `confidence`). For multiple angles in one invocation, pass multiple positional terms (batch query). See **[SKILL.md](../SKILL.md)** — query construction examples and the full flag table. diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 26e8b5f2e..a3dc6edbb 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,38 +1,38 @@ -"use strict";var I=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var ft=I(K=>{"use strict";Object.defineProperty(K,"__esModule",{value:!0});K.SUPPORTED_LANGUAGES=K.SPLITTERS=K.STEMMERS=void 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an=I(cn=>{"use strict";Object.defineProperty(cn,"__esModule",{value:!0});cn.Decoder=void 0;var Sr=oo(),Od=sn(),De=tn(),Pd=Xt(),ao=pr(),Nd=co(),le=en(),br="array",rt="map_key",lo="map_value",Ud=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new le.DecodeError("The type of key must be string or number but "+typeof t)},Ir=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=br,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===br){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===lo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,Er=new DataView(new ArrayBuffer(0)),Rd=new Uint8Array(Er.buffer);try{Er.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var uo=new RangeError("Insufficient data"),Ld=new Nd.CachedKeyDecoder,xr=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Er;bytes=Rd;headByte=nt;stack=new Ir;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Od.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??De.UINT32_MAX,this.maxBinLength=e?.maxBinLength??De.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??De.UINT32_MAX,this.maxMapLength=e?.maxMapLength??De.UINT32_MAX,this.maxExtLength=e?.maxExtLength??De.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Ld,this.mapKeyConverter=e?.mapKeyConverter??Ud}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,ao.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,ao.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,Sr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new le.DecodeError(`Unrecognized type byte: ${(0,Sr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===br)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new le.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=lo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new le.DecodeError(`Unrecognized array type byte: ${(0,Sr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new le.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new le.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new le.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new le.DecodeError(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw uo;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new le.DecodeError(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=(0,De.getUint64)(this.view,this.pos);return this.pos+=8,e}readI64(){let e=(0,De.getInt64)(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}};cn.Decoder=xr});var ho=I(un=>{"use strict";Object.defineProperty(un,"__esModule",{value:!0});un.decode=jd;un.decodeMulti=Cd;var fo=an();function jd(t,e){return new fo.Decoder(e).decode(t)}function Cd(t,e){return new fo.Decoder(e).decodeMulti(t)}});var yo=I(st=>{"use strict";Object.defineProperty(st,"__esModule",{value:!0});st.isAsyncIterable=po;st.asyncIterableFromStream=go;st.ensureAsyncIterable=Fd;function po(t){return t[Symbol.asyncIterator]!=null}async function*go(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Fd(t){return po(t)?t:go(t)}});var mo=I(it=>{"use strict";Object.defineProperty(it,"__esModule",{value:!0});it.decodeAsync=Bd;it.decodeArrayStream=$d;it.decodeMultiStream=qd;var vr=an(),Ar=yo();async function Bd(t,e){let n=(0,Ar.ensureAsyncIterable)(t);return new vr.Decoder(e).decodeAsync(n)}function $d(t,e){let n=(0,Ar.ensureAsyncIterable)(t);return new vr.Decoder(e).decodeArrayStream(n)}function qd(t,e){let n=(0,Ar.ensureAsyncIterable)(t);return new vr.Decoder(e).decodeStream(n)}});var _o=I(k=>{"use strict";Object.defineProperty(k,"__esModule",{value:!0});k.decodeTimestampExtension=k.encodeTimestampExtension=k.decodeTimestampToTimeSpec=k.encodeTimeSpecToTimestamp=k.encodeDateToTimeSpec=k.EXT_TIMESTAMP=k.ExtData=k.ExtensionCodec=k.Encoder=k.DecodeError=k.Decoder=k.decodeMultiStream=k.decodeArrayStream=k.decodeAsync=k.decodeMulti=k.decode=k.encode=void 0;var zd=io();Object.defineProperty(k,"encode",{enumerable:!0,get:function(){return zd.encode}});var wo=ho();Object.defineProperty(k,"decode",{enumerable:!0,get:function(){return wo.decode}});Object.defineProperty(k,"decodeMulti",{enumerable:!0,get:function(){return wo.decodeMulti}});var Tr=mo();Object.defineProperty(k,"decodeAsync",{enumerable:!0,get:function(){return Tr.decodeAsync}});Object.defineProperty(k,"decodeArrayStream",{enumerable:!0,get:function(){return Tr.decodeArrayStream}});Object.defineProperty(k,"decodeMultiStream",{enumerable:!0,get:function(){return Tr.decodeMultiStream}});var Vd=an();Object.defineProperty(k,"Decoder",{enumerable:!0,get:function(){return Vd.Decoder}});var Wd=en();Object.defineProperty(k,"DecodeError",{enumerable:!0,get:function(){return Wd.DecodeError}});var Kd=yr();Object.defineProperty(k,"Encoder",{enumerable:!0,get:function(){return Kd.Encoder}});var Hd=sn();Object.defineProperty(k,"ExtensionCodec",{enumerable:!0,get:function(){return Hd.ExtensionCodec}});var Gd=ur();Object.defineProperty(k,"ExtData",{enumerable:!0,get:function(){return Gd.ExtData}});var Ce=dr();Object.defineProperty(k,"EXT_TIMESTAMP",{enumerable:!0,get:function(){return Ce.EXT_TIMESTAMP}});Object.defineProperty(k,"encodeDateToTimeSpec",{enumerable:!0,get:function(){return Ce.encodeDateToTimeSpec}});Object.defineProperty(k,"encodeTimeSpecToTimestamp",{enumerable:!0,get:function(){return Ce.encodeTimeSpecToTimestamp}});Object.defineProperty(k,"decodeTimestampToTimeSpec",{enumerable:!0,get:function(){return Ce.decodeTimestampToTimeSpec}});Object.defineProperty(k,"encodeTimestampExtension",{enumerable:!0,get:function(){return Ce.encodeTimestampExtension}});Object.defineProperty(k,"decodeTimestampExtension",{enumerable:!0,get:function(){return Ce.decodeTimestampExtension}})});var kr=I((op,Eo)=>{"use strict";var q=require("fs"),X=Ki(),{encode:Yd,decode:Jd}=_o(),Dr=["id","content","work_unit","work_type","phase","topic","confidence","source_file","timestamp"];function So(t){if(!Number.isInteger(t)||t<=0)throw new Error(`createStore: dimensions must be a 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t{extensionCodec;context;useBigInt64;maxDepth;initialBufferSize;sortKeys;forceFloat32;ignoreUndefined;forceIntegerToFloat;pos;view;bytes;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Ed.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.maxDepth=e?.maxDepth??te.DEFAULT_MAX_DEPTH,this.initialBufferSize=e?.initialBufferSize??te.DEFAULT_INITIAL_BUFFER_SIZE,this.sortKeys=e?.sortKeys??!1,this.forceFloat32=e?.forceFloat32??!1,this.ignoreUndefined=e?.ignoreUndefined??!1,this.forceIntegerToFloat=e?.forceIntegerToFloat??!1,this.pos=0,this.view=new DataView(new ArrayBuffer(this.initialBufferSize)),this.bytes=new Uint8Array(this.view.buffer)}clone(){return new 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e=="string"?this.encodeString(e):this.useBigInt64&&typeof e=="bigint"?this.encodeBigInt64(e):this.encodeObject(e,n)}ensureBufferSizeToWrite(e){let n=this.pos+e;this.view.byteLength=0?e<128?this.writeU8(e):e<256?(this.writeU8(204),this.writeU8(e)):e<65536?(this.writeU8(205),this.writeU16(e)):e<4294967296?(this.writeU8(206),this.writeU32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(207),this.writeU64(e)):e>=-32?this.writeU8(224|e+32):e>=-128?(this.writeU8(208),this.writeI8(e)):e>=-32768?(this.writeU8(209),this.writeI16(e)):e>=-2147483648?(this.writeU8(210),this.writeI32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(211),this.writeI64(e)):this.encodeNumberAsFloat(e)}encodeNumberAsFloat(e){this.forceFloat32?(this.writeU8(202),this.writeF32(e)):(this.writeU8(203),this.writeF64(e))}encodeBigInt64(e){e>=BigInt(0)?(this.writeU8(207),this.writeBigUint64(e)):(this.writeU8(211),this.writeBigInt64(e))}writeStringHeader(e){if(e<32)this.writeU8(160+e);else if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,so.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,so.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,vd.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,io.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,io.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};te.Encoder=gr});var oo=I(mr=>{"use strict";Object.defineProperty(mr,"__esModule",{value:!0});mr.encode=Td;var Ad=yr();function Td(t,e){return new Ad.Encoder(e).encodeSharedRef(t)}});var co=I(wr=>{"use strict";Object.defineProperty(wr,"__esModule",{value:!0});wr.prettyByte=Dd;function Dd(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var ao=I(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.CachedKeyDecoder=void 0;var kd=Xt(),Md=16,Od=16,_r=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=Md,n=Od){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,kd.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};on.CachedKeyDecoder=_r});var an=I(cn=>{"use strict";Object.defineProperty(cn,"__esModule",{value:!0});cn.Decoder=void 0;var Sr=co(),Pd=sn(),De=tn(),Nd=Xt(),uo=pr(),Ud=ao(),le=en(),br="array",rt="map_key",fo="map_value",Rd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new le.DecodeError("The type of key must be string or number but "+typeof t)},Ir=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=br,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===br){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===fo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,Er=new DataView(new ArrayBuffer(0)),Ld=new Uint8Array(Er.buffer);try{Er.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var lo=new RangeError("Insufficient data"),jd=new Ud.CachedKeyDecoder,xr=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Er;bytes=Ld;headByte=nt;stack=new Ir;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Pd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??De.UINT32_MAX,this.maxBinLength=e?.maxBinLength??De.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??De.UINT32_MAX,this.maxMapLength=e?.maxMapLength??De.UINT32_MAX,this.maxExtLength=e?.maxExtLength??De.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:jd,this.mapKeyConverter=e?.mapKeyConverter??Rd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,uo.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,uo.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,Sr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new le.DecodeError(`Unrecognized type byte: ${(0,Sr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===br)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new le.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=fo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new le.DecodeError(`Unrecognized array type byte: ${(0,Sr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new le.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new le.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new le.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new le.DecodeError(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw lo;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new le.DecodeError(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=(0,De.getUint64)(this.view,this.pos);return this.pos+=8,e}readI64(){let e=(0,De.getInt64)(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}};cn.Decoder=xr});var po=I(un=>{"use strict";Object.defineProperty(un,"__esModule",{value:!0});un.decode=Cd;un.decodeMulti=Fd;var ho=an();function Cd(t,e){return new ho.Decoder(e).decode(t)}function Fd(t,e){return new ho.Decoder(e).decodeMulti(t)}});var mo=I(st=>{"use strict";Object.defineProperty(st,"__esModule",{value:!0});st.isAsyncIterable=go;st.asyncIterableFromStream=yo;st.ensureAsyncIterable=Bd;function go(t){return t[Symbol.asyncIterator]!=null}async function*yo(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Bd(t){return go(t)?t:yo(t)}});var wo=I(it=>{"use strict";Object.defineProperty(it,"__esModule",{value:!0});it.decodeAsync=$d;it.decodeArrayStream=qd;it.decodeMultiStream=zd;var vr=an(),Ar=mo();async function $d(t,e){let n=(0,Ar.ensureAsyncIterable)(t);return new vr.Decoder(e).decodeAsync(n)}function qd(t,e){let n=(0,Ar.ensureAsyncIterable)(t);return new vr.Decoder(e).decodeArrayStream(n)}function zd(t,e){let n=(0,Ar.ensureAsyncIterable)(t);return new vr.Decoder(e).decodeStream(n)}});var So=I(k=>{"use strict";Object.defineProperty(k,"__esModule",{value:!0});k.decodeTimestampExtension=k.encodeTimestampExtension=k.decodeTimestampToTimeSpec=k.encodeTimeSpecToTimestamp=k.encodeDateToTimeSpec=k.EXT_TIMESTAMP=k.ExtData=k.ExtensionCodec=k.Encoder=k.DecodeError=k.Decoder=k.decodeMultiStream=k.decodeArrayStream=k.decodeAsync=k.decodeMulti=k.decode=k.encode=void 0;var Vd=oo();Object.defineProperty(k,"encode",{enumerable:!0,get:function(){return Vd.encode}});var 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Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new vf({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function kf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` -`,"utf8"),B.renameSync(r,t)}qo.exports={DEFAULTS:Lo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:jo,systemConfigPath:Co,projectConfigPath:Fo,credentialsPath:Bo,readConfigFile:Ur,loadConfig:Tf,loadCredentials:Rr,writeCredentials:Af,resolveApiKey:$o,resolveProvider:Df,writeConfigFile:kf}});var ic=I((dp,sc)=>{"use strict";var Ie=require("fs"),xe=require("path"),Mf=require("readline"),$=Lr(),jr=kr(),{OpenAIProvider:Of}=dn(),zo="text-embedding-3-small",Vo=1536,Wo=1536;function Ko(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. -`),process.exit(1))}function Ho(){let t=Mf.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` +`).trim()===""}ko.exports={chunk:wf}});var Or=I((dp,Po)=>{"use strict";var Oo="stub";function xf(t){let e=2166136261;for(let n=0;n>>0}function Ef(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var Mr=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=xf(n)||1,s=Ef(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var No="text-embedding-3-small",Uo="https://api.openai.com/v1/embeddings",Pr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||No,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions});return[...(await this._fetch(r)).data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-u.index);for(let a=0;a{"use strict";var B=require("fs"),ot=require("path"),Lo=require("os"),{StubProvider:vf}=Or(),{OpenAIProvider:Af}=dn(),jo={similarity_threshold:.8,decay_months:6},Nr=["stub","openai"],Co={openai:"OPENAI_API_KEY"};function Fo(){return ot.join(Lo.homedir(),".config","workflows","config.json")}function Bo(t){return ot.join(t||process.cwd(),".workflows",".knowledge","config.json")}function $o(){return ot.join(Lo.homedir(),".config","workflows","credentials.json")}function Ur(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function Rr(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function Tf(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(B.existsSync(t))try{r=Rr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ot.dirname(t);B.existsSync(o)||B.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=B.openSync(c,"w",384);try{B.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{B.closeSync(a)}B.chmodSync(c,384),B.renameSync(c,t);try{B.chmodSync(t,384)}catch{}}function qo(t,e){if(!t)return null;let n=Co[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||$o(),s;try{s=Rr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function Df(t){let e=t&&t.systemPath||Fo(),n=t&&t.projectPath||Bo(),r=Ur(e),s=Ur(n),i=Object.assign({},jo);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=qo(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function kf(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new vf(n!=null?{dimensions:n}:void 0)}if(!Nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new Af({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function Mf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),B.renameSync(r,t)}zo.exports={DEFAULTS:jo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:Co,systemConfigPath:Fo,projectConfigPath:Bo,credentialsPath:$o,readConfigFile:Ur,loadConfig:Df,loadCredentials:Rr,writeCredentials:Tf,resolveApiKey:qo,resolveProvider:kf,writeConfigFile:Mf}});var oc=I((pp,ic)=>{"use strict";var Ie=require("fs"),xe=require("path"),Of=require("readline"),$=Lr(),jr=kr(),{OpenAIProvider:Pf}=dn(),Vo="text-embedding-3-small",Wo=1536,Ko=1536;function Ho(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function Go(){let t=Of.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function fn(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Go(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` +`),t.close(),process.exit(130)}),t}function fn(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Yo(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` `||l==="\r")return c(),s.write(` `),n(o.trim());if(l===""){c(),s.write(` `),process.exit(130);return}if(l==="")return c(),s.write(` -`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Yo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Jo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Xo(){return{knowledge:{}}}function Zo(t){if(!Ie.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=Ie.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function Qo(t){let e=xe.join(t,"config.json"),n=xe.join(t,"store.msp"),r=xe.join(t,"metadata.json"),s=Ie.existsSync(t),i=Ie.existsSync(e),o=Ie.existsSync(n),c=Ie.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function hn({apiKey:t,model:e,dimensions:n}){let s=await new Of({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function pn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function ec(t){let e=$.systemConfigPath(),n=Zo(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Jo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Xo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Zo(){return{knowledge:{}}}function Qo(t){if(!Ie.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=Ie.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function ec(t){let e=xe.join(t,"config.json"),n=xe.join(t,"store.msp"),r=xe.join(t,"metadata.json"),s=Ie.existsSync(t),i=Ie.existsSync(e),o=Ie.existsSync(n),c=Ie.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function hn({apiKey:t,model:e,dimensions:n}){let s=await new Pf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function pn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function tc(t){let e=$.systemConfigPath(),n=Qo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} @@ -51,12 +51,12 @@ Embedding provider: `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) `);let s;for(;s=(await fn(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return $.writeConfigFile(e,Jo()),process.stdout.write(` +`);if(s==="skip")return $.writeConfigFile(e,Xo()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await fn(t,"Embedding model",zo),o=await fn(t,"Vector dimensions",String(Vo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),$.writeConfigFile(e,Yo({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await fn(t,"Embedding model",Vo),o=await fn(t,"Vector dimensions",String(Wo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),$.writeConfigFile(e,Jo({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let a=$.PROVIDER_ENV_VARS.openai;return await tc(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function tc(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`);let a=$.PROVIDER_ENV_VARS.openai;return await nc(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function nc(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... `);try{await hn({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. `)}catch(c){let{message:a,hint:u}=pn(c);process.stdout.write(`${a} @@ -69,7 +69,7 @@ Found an existing API key in ${s} \u2014 validating via a test embed... ${u} `),!await Fe(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await Pf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Pf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await Nf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Nf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -85,7 +85,7 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await Go(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await Yo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... @@ -95,7 +95,7 @@ Validating via a test embed... `),!await Fe(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function nc(t){let e=xe.resolve(process.cwd(),".workflows",".knowledge"),n=xe.join(e,"config.json"),r=xe.join(e,"store.msp"),s=xe.join(e,"metadata.json"),i=Qo(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}}async function rc(t){let e=xe.resolve(process.cwd(),".workflows",".knowledge"),n=xe.join(e,"config.json"),r=xe.join(e,"store.msp"),s=xe.join(e,"metadata.json"),i=ec(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await Fe(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -103,27 +103,27 @@ Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);Ie.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Xo()),process.stdout.write(` config.json written -`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Wo;if(!i.storeExists||i.fullyInitialised){let u=await jr.createStore(a);await jr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) +`);Ie.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Zo()),process.stdout.write(` config.json written +`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Ko;if(!i.storeExists||i.fullyInitialised){let u=await jr.createStore(a);await jr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) `)}return(!i.metadataExists||i.fullyInitialised)&&(jr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function rc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` +`)),{created:!0,provider:c,dimensions:a}}async function sc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function Nf(t,e,n){Ko();let r=xe.resolve(process.cwd(),".workflows");Ie.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=Ho(),i;try{process.stdout.write(` +`)}}async function Uf(t,e,n){Ho();let r=xe.resolve(process.cwd(),".workflows");Ie.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=Go(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await ec(s),await nc(s)}finally{s.close()}await rc(t,n),process.stdout.write(` +`),i=await tc(s),await rc(s)}finally{s.close()}await sc(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}sc.exports={cmdSetup:Nf,requireTTY:Ko,createPrompter:Ho,ask:fn,askYesNo:Fe,askSecret:Go,buildSystemConfigOpenAI:Yo,buildSystemConfigStub:Jo,buildProjectConfigEmpty:Xo,detectSystemConfig:Zo,detectProjectInit:Qo,validateApiKey:hn,describeValidationError:pn,ensureOpenAIKey:tc,runSystemConfigStep:ec,runProjectInitStep:nc,runInitialIndexStep:rc,KEYWORD_ONLY_DIMENSIONS:Wo,OPENAI_DEFAULT_MODEL:zo,OPENAI_DEFAULT_DIMENSIONS:Vo}});var x=require("fs"),z=require("path"),v=kr(),lc=ko(),{StubProvider:Uf}=Or(),{OpenAIProvider:Rf}=dn(),Be=Lr(),dc=ic(),Br=["research","discussion","investigation","specification"],Lf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(x.existsSync(t))return t;if(x.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}ic.exports={cmdSetup:Uf,requireTTY:Ho,createPrompter:Go,ask:fn,askYesNo:Fe,askSecret:Yo,buildSystemConfigOpenAI:Jo,buildSystemConfigStub:Xo,buildProjectConfigEmpty:Zo,detectSystemConfig:Qo,detectProjectInit:ec,validateApiKey:hn,describeValidationError:pn,ensureOpenAIKey:nc,runSystemConfigStep:tc,runProjectInitStep:rc,runInitialIndexStep:sc,KEYWORD_ONLY_DIMENSIONS:Ko,OPENAI_DEFAULT_MODEL:Vo,OPENAI_DEFAULT_DIMENSIONS:Wo}});var x=require("fs"),z=require("path"),v=kr(),dc=Mo(),{StubProvider:Rf}=Or(),{OpenAIProvider:Lf}=dn(),Be=Lr(),fc=oc(),$r=["research","discussion","investigation","specification"],jf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(x.existsSync(t))return t;if(x.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),ut=[1e3,2e3,4e3],jf=5,Cr=10,$r=1536,oc=!1;function fc(t){let e=[],n={},r=0;for(;r [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),ut=[1e3,2e3,4e3],Cf=5,Fr=10,qr=1536,cc=!1;function hc(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -135,75 +135,83 @@ Commands: rebuild Rebuild the knowledge base from scratch setup Interactive setup wizard -Options: +Filter options (hard filters \u2014 non-matching chunks excluded): --work-type Filter by work type - --work-unit Filter by work unit (for remove) - --prefer-work-unit Re-rank boost toward this work unit (for query) + --work-unit Filter by work unit --phase Filter by phase --topic Filter by topic + +Re-ranking (query only, additive; repeat for multiple boosts): + --boost: Boost chunks matching : by +0.1 + Valid fields: work-unit, work-type, phase, + topic, confidence + +Other options: --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function Z(){return z.join(ne(),"metadata.json")}function de(){return z.join(ne(),".lock")}function Cf(t){return new Promise(e=>setTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;isetTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;izr(s,o,n,r),{maxAttempts:3,backoff:ut});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await mc(n,r,jf)}async function zr(t,e,n,r){let s=Ff(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!x.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(x.readFileSync(i,"utf8")),c=z.resolve(t),a=x.readFileSync(c,"utf8"),u=lc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=Z(),h=de();x.existsSync(l)||x.mkdirSync(l,{recursive:!0});let g,m,y=x.existsSync(d),S=x.existsSync(f);y&&(g=await v.loadStore(d)),S&&(m=v.readMetadata(f),Array.isArray(m.pending)||(m.pending=[]));let p,_;if(m){let T=pc(m,n,r);p=T.mode,_=T.provider}else r?(p="full",_=r):(p="keyword-only",_=null);if(!g){let T=_?_.dimensions():n.dimensions||$r;g=await v.createStore(T)}let w=null;if(p==="full"&&_&&u.length>0){let T=u.map(O=>O.content);w=await _.embedBatch(T)}let b=Date.now(),A=o.confidence||"medium",D=u.map((T,O)=>{let se=String(O+1).padStart(3,"0"),Q={id:`${e.workUnit}-${e.phase}-${e.topic}-${se}`,content:T.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:A,source_file:t,timestamp:b};return w&&(Q.embedding=w[O]),Q});return await v.withLock(h,async()=>{if(y?g=await v.loadStore(d):x.existsSync(d)&&(g=await v.loadStore(d)),p==="full"&&x.existsSync(f)){let O=v.readMetadata(f),se=_.dimensions();if(O.provider&&O.dimensions!==se)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${se}, store now has dims=${O.dimensions}. 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Added to pending queue. + Current config has no provider configured.`)}async function $f(t,e,n,r){if(t.length===0)return yn(e,n,r);let s=t[0],i=z.resolve(s);x.existsSync(i)||(process.stderr.write(`File not found: ${i} +`),process.exit(1));let o=zr(s),c=await lt(()=>Vr(s,o,n,r),{maxAttempts:3,backoff:ut});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await wc(n,r,Cf)}async function Vr(t,e,n,r){let s=Bf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!x.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(x.readFileSync(i,"utf8")),c=z.resolve(t),a=x.readFileSync(c,"utf8"),u=dc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=Z(),h=de();x.existsSync(l)||x.mkdirSync(l,{recursive:!0});let g,m,y=x.existsSync(d),S=x.existsSync(f);y&&(g=await v.loadStore(d)),S&&(m=v.readMetadata(f),Array.isArray(m.pending)||(m.pending=[]));let p,w;if(m){let T=gc(m,n,r);p=T.mode,w=T.provider}else r?(p="full",w=r):(p="keyword-only",w=null);if(!g){let T=w?w.dimensions():n.dimensions||qr;g=await v.createStore(T)}let _=null;if(p==="full"&&w&&u.length>0){let T=u.map(O=>O.content);_=await w.embedBatch(T)}let b=Date.now(),A=o.confidence||"medium",D=u.map((T,O)=>{let se=String(O+1).padStart(3,"0"),Q={id:`${e.workUnit}-${e.phase}-${e.topic}-${se}`,content:T.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:A,source_file:t,timestamp:b};return _&&(Q.embedding=_[O]),Q});return await v.withLock(h,async()=>{if(y?g=await v.loadStore(d):x.existsSync(d)&&(g=await v.loadStore(d)),p==="full"&&x.existsSync(f)){let O=v.readMetadata(f),se=w.dimensions();if(O.provider&&O.dimensions!==se)throw new Error(`Store schema changed during index (concurrent rebuild). 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Added to pending queue. `),d.stack&&process.stderr.write(d.stack+` -`)}}await mc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${u} already indexed. -`)}async function yc(t,e){let n=Z(),r=ne(),s=de();x.existsSync(r)||x.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;x.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});v.writeMetadata(n,i)})}async function gn(t){let e=Z(),n=de();x.existsSync(e)&&await v.withLock(n,async()=>{if(!x.existsSync(e))return;let r=v.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),v.writeMetadata(e,r))})}async function mc(t,e,n){let r=Z();if(!x.existsSync(r))return;let s=v.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=Cr){process.stderr.write(`Pending item ${o.file} exceeded ${Cr} attempts \u2014 evicting. Last error: ${o.error} +`)}}await wc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${u} already indexed. +`)}async function mc(t,e){let n=Z(),r=ne(),s=de();x.existsSync(r)||x.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;x.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});v.writeMetadata(n,i)})}async function gn(t){let e=Z(),n=de();x.existsSync(e)&&await v.withLock(n,async()=>{if(!x.existsSync(e))return;let r=v.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),v.writeMetadata(e,r))})}async function wc(t,e,n){let r=Z();if(!x.existsSync(r))return;let s=v.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=Fr){process.stderr.write(`Pending item ${o.file} exceeded ${Fr} attempts \u2014 evicting. 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Run \`knowledge rebuild\` to reindex. +`),await gn(o.file);continue}let a;try{a=zr(o.file)}catch{await gn(o.file);continue}try{await lt(()=>Vr(o.file,a,t,e),{maxAttempts:3,backoff:ut}),await gn(o.file)}catch(u){await mc(o.file,u.message)}}}var Br=10;function ke(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function _c(t,e){let n=Z(),r=ne(),s=de();x.existsSync(r)||x.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;x.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ke(t),c=i.pending_removals.findIndex(u=>ke(u)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let u=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(u.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});v.writeMetadata(n,i)})}async function uc(t){let e=Z(),n=de();x.existsSync(e)&&await v.withLock(n,async()=>{if(!x.existsSync(e))return;let r=v.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ke(t);r.pending_removals=r.pending_removals.filter(i=>ke(i)!==s),v.writeMetadata(e,r)})}async function Sc(){let t=Z();if(!x.existsSync(t))return;let e=v.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=Br){process.stderr.write(`Pending removal for ${ke(r)} exceeded ${Br} attempts \u2014 evicting. +`),await uc(r);continue}try{await bc({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ke(r)}. +`),await uc(r)}catch(s){try{await _c({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function bc(t){let e=re(),n=de();if(!x.existsSync(e))return 0;let r=0;return await v.withLock(n,async()=>{let s=await v.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await v.removeByFilter(s,i),await v.saveStore(s,e)}),r}var qf={high:4,medium:3,"low-medium":2,low:1};function zf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Vf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var Cr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},Wf=.1;function Kf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let u of e)i[u.field]===u.value&&(o+=Wf);let c=qf[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Hf(t){let e=[];for(let n of t)(!n.field||!Cr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". 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Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),x.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=Wr(),w=[];for(let _ of p)await yc(s,_.workUnit,_.phase,_.topic)||w.push(_.file);if(w.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${w.length}`);for(let _ of w)r.push(` ${_}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} +`)}let h=[],g=null;try{g=JSON.parse(ct(["list"]))}catch(p){at("cmdStatus:list",p)}let m=new Map;if(Array.isArray(g))for(let p of g)p&&p.name&&m.set(p.name,p);for(let p of Object.keys(o)){let w=m.get(p);w&&w.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let y=i.filter(p=>p.phase==="specification"),S=new Set(y.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of S){let[w,,_]=p.split("."),b=m.get(w);if(!b||!b.phases||!b.phases.specification||!b.phases.specification.items)continue;let A=b.phases.specification.items[_];A&&A.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` -`)}async function Yf(t,e,n,r){let s=re(),i=Z(),o=de();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function Zf(t,e,n,r){let s=re(),i=Z(),o=de();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. -Type 'rebuild' to confirm: `),await Jf()!=="rebuild"&&(process.stderr.write(`Aborted. -`),process.exit(1)),Vr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +Type 'rebuild' to confirm: `),await Qf()!=="rebuild"&&(process.stderr.write(`Aborted. +`),process.exit(1)),Wr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1));let u=s+".bak",l=i+".bak";await v.withLock(o,async()=>{x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l),x.existsSync(s)&&x.renameSync(s,u),x.existsSync(i)&&x.renameSync(i,l);let d=r?r.dimensions():n&&n.dimensions||$r,f=await v.createStore(d);await v.saveStore(f,s),v.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`),process.exit(1));let u=s+".bak",l=i+".bak";await v.withLock(o,async()=>{x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l),x.existsSync(s)&&x.renameSync(s,u),x.existsSync(i)&&x.renameSync(i,l);let d=r?r.dimensions():n&&n.dimensions||qr,f=await v.createStore(d);await v.saveStore(f,s),v.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. `);try{await yn(e,n,r)}catch(d){try{await v.withLock(o,async()=>{x.existsSync(u)&&(x.existsSync(s)&&x.unlinkSync(s),x.renameSync(u,s)),x.existsSync(l)&&(x.existsSync(i)&&x.unlinkSync(i),x.renameSync(l,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. `)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. Previous index is at: ${u} ${l} Rename them back manually to recover. Rollback error: ${f.message} -`)}throw d}x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l)}function Jf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Xf(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`)}throw d}x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l)}function Qf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function eh(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1)),await _c();let n=re();if(!x.existsSync(n)){let s=uc(e);process.stdout.write(`Removed 0 chunks for ${s} -`);return}let r=uc(e);try{let s=await Sc(e);process.stdout.write(`Removed ${s} chunks for ${r} -`)}catch(s){await wc(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. -`),process.exit(1)}}function uc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Zf(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){at(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return at(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Qf(t,e,n){await _c();let r=re(),s=de(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`),process.exit(1)),await Sc();let n=re();if(!x.existsSync(n)){let s=lc(e);process.stdout.write(`Removed 0 chunks for ${s} +`);return}let r=lc(e);try{let s=await bc(e);process.stdout.write(`Removed ${s} chunks for ${r} +`)}catch(s){await _c(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. +`),process.exit(1)}}function lc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function th(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){at(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return at(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function nh(t,e,n){await Sc();let r=re(),s=de(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!x.existsSync(r))return;let c=await v.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await v.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let y of l)d[y.work_unit]||(d[y.work_unit]=[]),d[y.work_unit].push(y);let f=[],h=[];for(let[y,S]of Object.entries(d)){let p=Zf(y);if(!p||p.status!=="completed"||!p.completed_at)continue;let _=qf(p.completed_at);if(!_||isNaN(_.getTime()))continue;let w=new Date(_);if(w.setMonth(w.getMonth()+o),w>a)continue;let b=S.filter(D=>D.phase!=="specification");if(b.length===0)continue;let A=new Set(b.map(D=>D.phase));f.push({workUnit:y,count:b.length,phases:A});for(let D of b)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((y,S)=>y+S.count,0);if(e.dryRun){let y=[];y.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let S of f)y.push(` \u2022 ${S.workUnit}: ${S.count} chunks (${Array.from(S.phases).join(", ")})`);process.stdout.write(y.join(` +`),process.exit(1));let o=i;if(!x.existsSync(r))return;let c=await v.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await v.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let y of l)d[y.work_unit]||(d[y.work_unit]=[]),d[y.work_unit].push(y);let f=[],h=[];for(let[y,S]of Object.entries(d)){let p=th(y);if(!p||p.status!=="completed"||!p.completed_at)continue;let w=zf(p.completed_at);if(!w||isNaN(w.getTime()))continue;let _=new Date(w);if(_.setMonth(_.getMonth()+o),_>a)continue;let b=S.filter(D=>D.phase!=="specification");if(b.length===0)continue;let A=new Set(b.map(D=>D.phase));f.push({workUnit:y,count:b.length,phases:A});for(let D of b)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((y,S)=>y+S.count,0);if(e.dryRun){let y=[];y.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let S of f)y.push(` \u2022 ${S.workUnit}: ${S.count} chunks (${Array.from(S.phases).join(", ")})`);process.stdout.write(y.join(` `)+` -`);return}await v.withLock(s,async()=>{let y=await v.loadStore(r),S=new Set;for(let p of h){let _=`${p.work_unit}|${p.phase}|${p.topic}`;S.has(_)||(S.add(_),await v.removeByIdentity(y,p))}await v.saveStore(y,r)});let m=[];m.push(`Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let y of f)m.push(` \u2022 ${y.workUnit}: ${y.count} chunks (${Array.from(y.phases).join(", ")})`);process.stdout.write(m.join(` +`);return}await v.withLock(s,async()=>{let y=await v.loadStore(r),S=new Set;for(let p of h){let w=`${p.work_unit}|${p.phase}|${p.topic}`;S.has(w)||(S.add(w),await v.removeByIdentity(y,p))}await v.saveStore(y,r)});let m=[];m.push(`Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let y of f)m.push(` \u2022 ${y.workUnit}: ${y.count} chunks (${Array.from(y.phases).join(", ")})`);process.stdout.write(m.join(` `)+` -`)}async function bc(){let t=process.argv.slice(2),{positional:e,flags:n}=fc(t),r=e[0],s=e.slice(1),i=hc(n);r||(process.stderr.write(cc+` -`),process.exit(1));let o=null,c=null;switch(["index","query","rebuild","compact"].includes(r)&&(o=Be.loadConfig(),c=Be.resolveProvider(o)),r){case"index":await Bf(s,i,o,c);break;case"query":await Kf(s,i,o,c);break;case"check":await Hf(s,i,o,c);break;case"status":await Gf();break;case"remove":await Xf(s,i,o,c);break;case"compact":await Qf(s,i,o,c);break;case"rebuild":await Yf(s,i,o,c);break;case"setup":await dc.cmdSetup(yn,s,i);break;default:process.stderr.write(`Unknown command "${r}". +`)}async function Ic(){let t=process.argv.slice(2),{positional:e,flags:n,boosts:r}=hc(t),s=e[0],i=e.slice(1),o=pc(n,r);s||(process.stderr.write(ac+` +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=Be.loadConfig(),a=Be.resolveProvider(c)),s){case"index":await $f(i,o,c,a);break;case"query":await Yf(i,o,c,a);break;case"check":await Jf(i,o,c,a);break;case"status":await Xf();break;case"remove":await eh(i,o,c,a);break;case"compact":await nh(i,o,c,a);break;case"rebuild":await Zf(i,o,c,a);break;case"setup":await fc.cmdSetup(yn,i,o);break;default:process.stderr.write(`Unknown command "${s}". -${cc} -`),process.exit(1)}}module.exports={parseArgs:fc,buildOptions:hc,deriveIdentity:qr,resolveProviderState:pc,withRetry:lt,main:bc,cmdIndexBulk:yn,StubProvider:Uf,OpenAIProvider:Rf,store:v,chunker:lc,config:Be,setup:dc,knowledgeDir:ne,storePath:re,metadataPath:Z,lockFilePath:de,INDEXED_PHASES:Br,KEYWORD_ONLY_DIMENSIONS:$r};require.main===module&&bc().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` +${ac} +`),process.exit(1)}}module.exports={parseArgs:hc,buildOptions:pc,deriveIdentity:zr,resolveProviderState:gc,withRetry:lt,main:Ic,cmdIndexBulk:yn,StubProvider:Rf,OpenAIProvider:Lf,store:v,chunker:dc,config:Be,setup:fc,knowledgeDir:ne,storePath:re,metadataPath:Z,lockFilePath:de,INDEXED_PHASES:$r,KEYWORD_ONLY_DIMENSIONS:qr};require.main===module&&Ic().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index a36dc41e6..0ef70adb8 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -57,15 +57,33 @@ let stubUpgradeWarned = false; // --------------------------------------------------------------------------- /** - * Parse argv-style args into { positional: string[], flags: object }. - * Handles --flag value and --flag=value forms. + * Parse argv-style args into { positional, flags, boosts }. + * Handles --flag value and --flag=value forms for regular flags. + * + * `--boost: ` is special — repeatable, collected into an + * ordered list. The field name is embedded in the flag name (not the value) + * so skill templates never have to parse or escape a key/value separator. */ function parseArgs(argv) { const positional = []; const flags = {}; + const boosts = []; let i = 0; while (i < argv.length) { const arg = argv[i]; + if (arg.startsWith('--boost:')) { + const field = arg.slice('--boost:'.length); + if (i + 1 < argv.length && !argv[i + 1].startsWith('--')) { + boosts.push({ field, value: argv[i + 1] }); + i += 2; + } else { + // Missing value — leave null so the command handler can error out + // with a clear message at validation time. + boosts.push({ field, value: null }); + i++; + } + continue; + } if (arg.startsWith('--')) { const eqIdx = arg.indexOf('='); if (eqIdx !== -1) { @@ -85,26 +103,24 @@ function parseArgs(argv) { } i++; } - return { positional, flags }; + return { positional, flags, boosts }; } /** * Build an options object from parsed flags for command handlers. + * `--work-unit` is a hard filter on every command that accepts it + * (consistent with --phase, --topic, --work-type). Re-ranking happens + * exclusively through --boost:. */ -function buildOptions(flags) { +function buildOptions(flags, boosts) { return { workType: flags['work-type'] || null, phase: flags['phase'] || null, - // `remove` uses this as a filter ("what to delete"). The filter semantics - // match --phase / --topic / --work-type, so the name is consistent. workUnit: flags['work-unit'] || null, - // `query` uses this as a re-rank boost ("bias results toward this work - // unit, don't filter out cross-work-unit hits"). Separate flag name so - // boost and filter never share a spelling. - preferWorkUnit: flags['prefer-work-unit'] || null, topic: flags['topic'] || null, limit: flags['limit'] ? parseInt(flags['limit'], 10) : null, dryRun: flags['dry-run'] === true || flags['dry-run'] === 'true', + boosts: boosts || [], }; } @@ -124,12 +140,18 @@ Commands: rebuild Rebuild the knowledge base from scratch setup Interactive setup wizard -Options: +Filter options (hard filters — non-matching chunks excluded): --work-type Filter by work type - --work-unit Filter by work unit (for remove) - --prefer-work-unit Re-rank boost toward this work unit (for query) + --work-unit Filter by work unit --phase Filter by phase --topic Filter by topic + +Re-ranking (query only, additive; repeat for multiple boosts): + --boost: Boost chunks matching : by +0.1 + Valid fields: work-unit, work-type, phase, + topic, confidence + +Other options: --limit Limit number of results --dry-run Preview without making changes`; @@ -991,15 +1013,31 @@ function formatDate(ts) { return `${yyyy}-${mm}-${dd}`; } +// CLI boost field → store schema field. Kebab-case on the CLI surface, +// snake_case in the schema. Keeps the CLI consistent with --work-unit / +// --work-type while matching the indexed field names internally. +const BOOST_FIELD_MAP = { + 'work-unit': 'work_unit', + 'work-type': 'work_type', + 'phase': 'phase', + 'topic': 'topic', + 'confidence': 'confidence', +}; +const BOOST_AMOUNT = 0.1; + /** * Application-level re-ranking per design doc lines 566-574. - * Adjusts Orama scores based on work-unit proximity, confidence tier, - * and recency. Returns the array sorted by adjusted score (descending). + * Adjusts Orama scores based on user-specified boosts (+0.1 per match, + * additive across boosts), plus always-on confidence tier and recency + * signals. Returns the array sorted by adjusted score (descending). + * + * @param {Array} results raw result rows + * @param {Array<{field: string, value: string}>} boosts normalised boost + * list — field is already mapped to the store schema name */ -function rerank(results, workUnitHint) { +function rerank(results, boosts) { if (results.length === 0) return results; - // Find the most recent timestamp for normalisation. const maxTs = Math.max(...results.map((r) => r.timestamp || 0)); const minTs = Math.min(...results.map((r) => r.timestamp || 0)); const tsRange = maxTs - minTs || 1; @@ -1008,16 +1046,20 @@ function rerank(results, workUnitHint) { .map((r) => { let adjustedScore = r.score || 0; - // Work-unit proximity boost (0.1 when matching). - if (workUnitHint && r.work_unit === workUnitHint) { - adjustedScore += 0.1; + // User-specified boosts — +0.1 per match, additive. + if (Array.isArray(boosts)) { + for (const b of boosts) { + if (r[b.field] === b.value) { + adjustedScore += BOOST_AMOUNT; + } + } } - // Confidence tier boost (0 to 0.04). + // Always-on confidence tier boost (0 to 0.04). const confRank = CONFIDENCE_RANK[r.confidence] || 0; adjustedScore += confRank * 0.01; - // Recency boost (0 to 0.05). + // Always-on recency boost (0 to 0.05). const recency = ((r.timestamp || 0) - minTs) / tsRange; adjustedScore += recency * 0.05; @@ -1026,6 +1068,29 @@ function rerank(results, workUnitHint) { .sort((a, b) => b.score - a.score); } +/** + * Validate user-supplied boost directives and map CLI field names to the + * store schema field names. Exits with a clear error on unknown field or + * missing value so skill-template typos don't silently no-op. + */ +function normaliseBoosts(boosts) { + const out = []; + for (const b of boosts) { + if (!b.field || !BOOST_FIELD_MAP[b.field]) { + process.stderr.write( + `Unknown --boost field: "${b.field}". Valid fields: ${Object.keys(BOOST_FIELD_MAP).join(', ')}\n` + ); + process.exit(1); + } + if (b.value == null || b.value === '') { + process.stderr.write(`--boost:${b.field} requires a value\n`); + process.exit(1); + } + out.push({ field: BOOST_FIELD_MAP[b.field], value: b.value }); + } + return out; +} + /** * Resolve provider state for query. Symmetric with index-time resolution * but returns mode information instead of throwing for the upgrade case. @@ -1071,7 +1136,7 @@ function resolveQueryMode(metadata, cfg, provider) { async function cmdQuery(args, options, cfg, provider) { if (args.length === 0) { - process.stderr.write('Usage: knowledge query [...] [--phase ...] [--work-type ...] [--prefer-work-unit ...] [--topic ...] [--limit N]\n'); + process.stderr.write('Usage: knowledge query [...] [--work-unit ...] [--work-type ...] [--phase ...] [--topic ...] [--boost: ]... [--limit N]\n'); process.exit(1); } @@ -1107,9 +1172,8 @@ async function cmdQuery(args, options, cfg, provider) { stubNote = '[keyword-only mode but embedding provider configured — run knowledge rebuild for full hybrid search]'; } - // Build where clause from hard filters. --prefer-work-unit is NOT here — - // it's a re-rank proximity hint applied after search, so other work units - // can still appear in results but rank lower. + // Build where clause from hard filters. Every --flag that names a + // dimension is a filter; re-ranking happens exclusively via --boost:. const where = {}; if (options.phase) { const phases = options.phase.split(',').map((s) => s.trim()); @@ -1119,6 +1183,10 @@ async function cmdQuery(args, options, cfg, provider) { const types = options.workType.split(',').map((s) => s.trim()); where.work_type = types.length === 1 ? { eq: types[0] } : { in: types }; } + if (options.workUnit) { + const units = options.workUnit.split(',').map((s) => s.trim()); + where.work_unit = units.length === 1 ? { eq: units[0] } : { in: units }; + } if (options.topic) { const topics = options.topic.split(',').map((s) => s.trim()); where.topic = topics.length === 1 ? { eq: topics[0] } : { in: topics }; @@ -1161,8 +1229,9 @@ async function cmdQuery(args, options, cfg, provider) { } } - // Re-rank merged results using the boost hint (--prefer-work-unit). - let results = rerank(Array.from(allResults.values()), options.preferWorkUnit); + // Re-rank merged results using --boost: directives. + const normalisedBoosts = normaliseBoosts(options.boosts); + let results = rerank(Array.from(allResults.values()), normalisedBoosts); if (results.length > limit) { results = results.slice(0, limit); @@ -1774,10 +1843,10 @@ async function cmdCompact(_args, options, cfg) { async function main() { const rawArgs = process.argv.slice(2); - const { positional, flags } = parseArgs(rawArgs); + const { positional, flags, boosts } = parseArgs(rawArgs); const command = positional[0]; const commandArgs = positional.slice(1); - const options = buildOptions(flags); + const options = buildOptions(flags, boosts); if (!command) { process.stderr.write(USAGE + '\n'); diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index f5be3e47a..04e712128 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -608,11 +608,71 @@ Line 48. Line 49. Line 50. Line 51. Line 52. Line 53. MD run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 run_kb index .workflows/data-model/discussion/data-model.md >/dev/null 2>&1 -# Query with --prefer-work-unit auth-flow: auth-flow results should appear first. -output=$(run_kb query "token refresh" --prefer-work-unit auth-flow --limit 2 2>&1) +# Query with --boost:work-unit auth-flow: auth-flow results should appear first. +output=$(run_kb query "token refresh" --boost:work-unit auth-flow --limit 2 2>&1) # Extract the first provenance line's work_unit. first_wu=$(echo "$output" | grep -m1 '^\[discussion' | sed 's/.*| \([^/]*\)\/.*/\1/') assert_eq "boosted work-unit appears first" "auth-flow" "$first_wu" +# Cross-work-unit context still surfaces — data-model should be present too. +assert_eq "boost keeps cross-work-unit results" "true" \ + "$(echo "$output" | grep -q 'data-model' && echo true || echo false)" +teardown_project + +# --- Test 31b: --work-unit is a hard filter on query (excludes other units) --- +echo "Test 31b: --work-unit filters on query" +setup_project +create_work_unit "auth-flow" "feature" "Auth" +create_work_unit "data-model" "feature" "Data" +write_stub_config +mkdir -p "$TEST_ROOT/.workflows/auth-flow/discussion" +mkdir -p "$TEST_ROOT/.workflows/data-model/discussion" +cat > "$TEST_ROOT/.workflows/auth-flow/discussion/auth-flow.md" <<'MD' +# Auth Discussion +## Token refresh +Token refresh design. Rate limiting. Padding line 1. Padding line 2. Padding line 3. +Padding line 4. Padding line 5. Padding line 6. Padding line 7. Padding line 8. +Padding line 9. Padding line 10. Padding line 11. Padding line 12. Padding line 13. +MD +cat > "$TEST_ROOT/.workflows/data-model/discussion/data-model.md" <<'MD' +# Data Model Discussion +## Token storage +Token refresh storage. Rate limiting. Padding line 1. Padding line 2. Padding line 3. +Padding line 4. Padding line 5. Padding line 6. Padding line 7. Padding line 8. +Padding line 9. Padding line 10. Padding line 11. Padding line 12. Padding line 13. +MD +run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 +run_kb index .workflows/data-model/discussion/data-model.md >/dev/null 2>&1 +output=$(run_kb query "token" --work-unit auth-flow --limit 10 2>&1) +assert_eq "filter includes auth-flow" "true" "$(echo "$output" | grep -q 'auth-flow/' && echo true || echo false)" +assert_eq "filter excludes data-model" "false" "$(echo "$output" | grep -q 'data-model/' && echo true || echo false)" +teardown_project + +# --- Test 31c: unknown boost field errors out --- +echo "Test 31c: Unknown --boost field errors" +setup_project +create_work_unit "auth-flow" "feature" "Auth" +write_stub_config +create_discussion_file "auth-flow" "auth-flow" +run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 +exit_code=0 +output=$(run_kb query "anything" --boost:bogus foo 2>&1) || exit_code=$? +assert_eq "unknown boost field exits non-zero" "true" "$([ "$exit_code" -ne 0 ] && echo true || echo false)" +assert_eq "unknown boost field error mentions valid fields" "true" \ + "$(echo "$output" | grep -q 'work-unit, work-type, phase, topic, confidence' && echo true || echo false)" +teardown_project + +# --- Test 31d: missing --boost value errors out --- +echo "Test 31d: Missing --boost value errors" +setup_project +create_work_unit "auth-flow" "feature" "Auth" +write_stub_config +create_discussion_file "auth-flow" "auth-flow" +run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 +exit_code=0 +output=$(run_kb query "anything" --boost:work-unit 2>&1) || exit_code=$? +assert_eq "missing boost value exits non-zero" "true" "$([ "$exit_code" -ne 0 ] && echo true || echo false)" +assert_eq "missing boost value error explicit" "true" \ + "$(echo "$output" | grep -q 'requires a value' && echo true || echo false)" teardown_project # --- Test 32: Query errors when metadata missing but store exists --- From cccfe00d2ed7dc86406166e30732c1c62f62c7db Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 17:21:57 +0100 Subject: [PATCH 25/78] perf(build): resolve deps via ESM, saves 22 KB from bundle MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Orama and @msgpack/msgpack both publish ESM dists with sideEffects: false. Previously our esbuild config defaulted to the 'require' condition (because we emit CJS output), pulling the CJS barrel files that prevent meaningful tree-shaking. Adding: conditions: ['node', 'import'] mainFields: ['module', 'main'] forces ESM resolution for dependencies while keeping our own source (which still uses require()) and the output format (CJS) unchanged. esbuild handles the ESM→CJS conversion internally. Measured: 175.9 KB → 154.1 KB. 141 CLI tests + 198 Node tests green against the new bundle. --- build/knowledge.build.js | 6 + .../workflow-knowledge/scripts/knowledge.cjs | 200 ++++++++-------- undefined/bundle.cjs | 217 ++++++++++++++++++ undefined/meta.json | 1 + 4 files changed, 324 insertions(+), 100 deletions(-) create mode 100644 undefined/bundle.cjs create mode 100644 undefined/meta.json diff --git a/build/knowledge.build.js b/build/knowledge.build.js index 9eb309169..c062d60d7 100644 --- a/build/knowledge.build.js +++ b/build/knowledge.build.js @@ -25,6 +25,12 @@ esbuild format: 'cjs', target: 'node18', minify: true, + // Force ESM resolution for dependencies even though we emit CJS output. + // Orama and @msgpack/msgpack both ship ESM dists with sideEffects: false; + // ESM resolution lets esbuild tree-shake in a way CJS barrel files block. + // Net effect measured: ~22 KB shaved off the bundle with no behaviour change. + conditions: ['node', 'import'], + mainFields: ['module', 'main'], logLevel: 'info', }) .catch((err) => { diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index a3dc6edbb..e3522665b 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,48 +1,48 @@ -"use strict";var I=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var ft=I(K=>{"use strict";Object.defineProperty(K,"__esModule",{value:!0});K.SUPPORTED_LANGUAGES=K.SPLITTERS=K.STEMMERS=void 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To solve this, please explicitly import and specify the "%s" stemmer from the package @orama/stemmers. See https://docs.orama.com/docs/orama-js/text-analysis/stemming for more information.',CUSTOM_STOP_WORDS_MUST_BE_FUNCTION_OR_ARRAY:"Custom stop words array must only contain strings.",UNSUPPORTED_COMPONENT:'Unsupported component "%s".',COMPONENT_MUST_BE_FUNCTION:'The component "%s" must be a function.',COMPONENT_MUST_BE_FUNCTION_OR_ARRAY_FUNCTIONS:'The component "%s" must be a function or an array of functions.',INVALID_SCHEMA_TYPE:'Unsupported schema type "%s" at "%s". Expected "string", "boolean" or "number" or array of them.',DOCUMENT_ID_MUST_BE_STRING:'Document id must be of type "string". 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if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=(0,so.utf8Count)(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),(0,so.utf8Encode)(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=(0,vd.ensureUint8Array)(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),(0,io.setUint64)(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),(0,io.setInt64)(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}};te.Encoder=gr});var oo=I(mr=>{"use strict";Object.defineProperty(mr,"__esModule",{value:!0});mr.encode=Td;var Ad=yr();function Td(t,e){return new Ad.Encoder(e).encodeSharedRef(t)}});var co=I(wr=>{"use strict";Object.defineProperty(wr,"__esModule",{value:!0});wr.prettyByte=Dd;function Dd(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}});var ao=I(on=>{"use strict";Object.defineProperty(on,"__esModule",{value:!0});on.CachedKeyDecoder=void 0;var kd=Xt(),Md=16,Od=16,_r=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=Md,n=Od){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=(0,kd.utf8DecodeJs)(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}};on.CachedKeyDecoder=_r});var an=I(cn=>{"use strict";Object.defineProperty(cn,"__esModule",{value:!0});cn.Decoder=void 0;var Sr=co(),Pd=sn(),De=tn(),Nd=Xt(),uo=pr(),Ud=ao(),le=en(),br="array",rt="map_key",fo="map_value",Rd=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new le.DecodeError("The type of key must be string or number but "+typeof t)},Ir=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=br,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=rt,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===br){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===rt||e.type===fo){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},nt=-1,Er=new DataView(new ArrayBuffer(0)),Ld=new Uint8Array(Er.buffer);try{Er.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}var lo=new RangeError("Insufficient data"),jd=new Ud.CachedKeyDecoder,xr=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Er;bytes=Ld;headByte=nt;stack=new Ir;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??Pd.ExtensionCodec.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??De.UINT32_MAX,this.maxBinLength=e?.maxBinLength??De.UINT32_MAX,this.maxArrayLength=e?.maxArrayLength??De.UINT32_MAX,this.maxMapLength=e?.maxMapLength??De.UINT32_MAX,this.maxExtLength=e?.maxExtLength??De.UINT32_MAX,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:jd,this.mapKeyConverter=e?.mapKeyConverter??Rd}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=nt,this.stack.reset()}setBuffer(e){let n=(0,uo.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,uo.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${(0,Sr.prettyByte)(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new le.DecodeError(`Unrecognized type byte: ${(0,Sr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===br)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new le.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=fo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new le.DecodeError(`Unrecognized array type byte: ${(0,Sr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new le.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new le.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new le.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new le.DecodeError(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw lo;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new le.DecodeError(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=(0,De.getUint64)(this.view,this.pos);return this.pos+=8,e}readI64(){let e=(0,De.getInt64)(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}};cn.Decoder=xr});var po=I(un=>{"use strict";Object.defineProperty(un,"__esModule",{value:!0});un.decode=Cd;un.decodeMulti=Fd;var ho=an();function Cd(t,e){return new ho.Decoder(e).decode(t)}function Fd(t,e){return new ho.Decoder(e).decodeMulti(t)}});var mo=I(st=>{"use strict";Object.defineProperty(st,"__esModule",{value:!0});st.isAsyncIterable=go;st.asyncIterableFromStream=yo;st.ensureAsyncIterable=Bd;function go(t){return t[Symbol.asyncIterator]!=null}async function*yo(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Bd(t){return go(t)?t:yo(t)}});var wo=I(it=>{"use strict";Object.defineProperty(it,"__esModule",{value:!0});it.decodeAsync=$d;it.decodeArrayStream=qd;it.decodeMultiStream=zd;var vr=an(),Ar=mo();async function $d(t,e){let n=(0,Ar.ensureAsyncIterable)(t);return new vr.Decoder(e).decodeAsync(n)}function qd(t,e){let n=(0,Ar.ensureAsyncIterable)(t);return new vr.Decoder(e).decodeArrayStream(n)}function zd(t,e){let n=(0,Ar.ensureAsyncIterable)(t);return new vr.Decoder(e).decodeStream(n)}});var So=I(k=>{"use strict";Object.defineProperty(k,"__esModule",{value:!0});k.decodeTimestampExtension=k.encodeTimestampExtension=k.decodeTimestampToTimeSpec=k.encodeTimeSpecToTimestamp=k.encodeDateToTimeSpec=k.EXT_TIMESTAMP=k.ExtData=k.ExtensionCodec=k.Encoder=k.DecodeError=k.Decoder=k.decodeMultiStream=k.decodeArrayStream=k.decodeAsync=k.decodeMulti=k.decode=k.encode=void 0;var Vd=oo();Object.defineProperty(k,"encode",{enumerable:!0,get:function(){return Vd.encode}});var _o=po();Object.defineProperty(k,"decode",{enumerable:!0,get:function(){return _o.decode}});Object.defineProperty(k,"decodeMulti",{enumerable:!0,get:function(){return _o.decodeMulti}});var Tr=wo();Object.defineProperty(k,"decodeAsync",{enumerable:!0,get:function(){return Tr.decodeAsync}});Object.defineProperty(k,"decodeArrayStream",{enumerable:!0,get:function(){return Tr.decodeArrayStream}});Object.defineProperty(k,"decodeMultiStream",{enumerable:!0,get:function(){return Tr.decodeMultiStream}});var Wd=an();Object.defineProperty(k,"Decoder",{enumerable:!0,get:function(){return Wd.Decoder}});var Kd=en();Object.defineProperty(k,"DecodeError",{enumerable:!0,get:function(){return Kd.DecodeError}});var Hd=yr();Object.defineProperty(k,"Encoder",{enumerable:!0,get:function(){return Hd.Encoder}});var Gd=sn();Object.defineProperty(k,"ExtensionCodec",{enumerable:!0,get:function(){return Gd.ExtensionCodec}});var Yd=ur();Object.defineProperty(k,"ExtData",{enumerable:!0,get:function(){return 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Released state is not on top of the stack.");if(e.type===Yn){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===Xe||e.type===gi){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},Je=-1,Jn=new DataView(new ArrayBuffer(0)),Sa=new Uint8Array(Jn.buffer);try{Jn.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}mi=new RangeError("Insufficient data"),Ia=new $t,j=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Jn;bytes=Sa;headByte=Je;stack=new Hn;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??oe.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??4294967295,this.maxBinLength=e?.maxBinLength??4294967295,this.maxArrayLength=e?.maxArrayLength??4294967295,this.maxMapLength=e?.maxMapLength??4294967295,this.maxExtLength=e?.maxExtLength??4294967295,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Ia,this.mapKeyConverter=e?.mapKeyConverter??xa}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=Je,this.stack.reset()}setBuffer(e){let n=Ye(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===Je&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=Ye(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${Ct(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let 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Available providers: ${nr.join(", ")}`);return t._api_key&&e==="openai"?new Qa({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function rl(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=Ze.dirname(t);L.existsSync(n)||L.mkdirSync(n,{recursive:!0});let r=t+".tmp";L.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),L.renameSync(r,t)}Hi.exports={DEFAULTS:Wi,AVAILABLE_PROVIDERS:nr,PROVIDER_ENV_VARS:ji,systemConfigPath:qi,projectConfigPath:Ki,credentialsPath:Gi,readConfigFile:rr,loadConfig:tl,loadCredentials:sr,writeCredentials:el,resolveApiKey:Yi,resolveProvider:nl,writeConfigFile:rl}});var ho=ge((Sh,fo)=>{"use strict";var ae=require("fs"),le=require("path"),sl=require("readline"),$=ir(),or=Zn(),{OpenAIProvider:il}=Vt(),Ji="text-embedding-3-small",Xi=1536,Zi=1536;function Qi(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function eo(){let t=sl.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function fn(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Yo(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` -`||l==="\r")return c(),s.write(` -`),n(o.trim());if(l===""){c(),s.write(` -`),process.exit(130);return}if(l==="")return c(),s.write(` -`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Jo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Xo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Zo(){return{knowledge:{}}}function Qo(t){if(!Ie.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=Ie.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function ec(t){let e=xe.join(t,"config.json"),n=xe.join(t,"store.msp"),r=xe.join(t,"metadata.json"),s=Ie.existsSync(t),i=Ie.existsSync(e),o=Ie.existsSync(n),c=Ie.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function hn({apiKey:t,model:e,dimensions:n}){let s=await new Pf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function pn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. 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Creating a new one. `);let r=n.exists&&n.valid&&!n.knowledge.provider;process.stdout.write(` @@ -50,26 +50,26 @@ Embedding provider: `),process.stdout.write(` openai \u2014 OpenAI embeddings API (requires an API key) `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) -`);let s;for(;s=(await fn(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return $.writeConfigFile(e,Xo()),process.stdout.write(` +`);let s;for(;s=(await Wt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". +`);if(s==="skip")return $.writeConfigFile(e,ro()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await fn(t,"Embedding model",Vo),o=await fn(t,"Vector dimensions",String(Wo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),$.writeConfigFile(e,Jo({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await Wt(t,"Embedding model",Ji),o=await Wt(t,"Vector dimensions",String(Xi)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),$.writeConfigFile(e,no({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let a=$.PROVIDER_ENV_VARS.openai;return await nc(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function nc(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`);let a=$.PROVIDER_ENV_VARS.openai;return await ao(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function ao(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... -`);try{await hn({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. -`)}catch(c){let{message:a,hint:u}=pn(c);process.stdout.write(`${a} - ${u} +`);try{await jt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. +`)}catch(c){let{message:a,hint:l}=qt(c);process.stdout.write(`${a} + ${l} `),process.stdout.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. Setup will continue \u2014 indexing will queue until the key is corrected. `)}return}let o=$.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` Found an existing API key in ${s} \u2014 validating via a test embed... -`);try{await hn({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. -`);return}catch(c){let{message:a,hint:u}=pn(c);if(process.stdout.write(`${a} - ${u} -`),!await Fe(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. +`);try{await jt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. +`);return}catch(c){let{message:a,hint:l}=qt(c);if(process.stdout.write(`${a} + ${l} +`),!await ke(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await Nf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Nf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await ol(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function ol(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -85,45 +85,45 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await Yo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await to(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... -`);try{await hn({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=pn(o);if(process.stdout.write(`${c} +`);try{await jt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=qt(o);if(process.stdout.write(`${c} ${a} -`),!await Fe(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. +`),!await ke(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function rc(t){let e=xe.resolve(process.cwd(),".workflows",".knowledge"),n=xe.join(e,"config.json"),r=xe.join(e,"store.msp"),s=xe.join(e,"metadata.json"),i=ec(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}}async function lo(t){let e=le.resolve(process.cwd(),".workflows",".knowledge"),n=le.join(e,"config.json"),r=le.join(e,"store.msp"),s=le.join(e,"metadata.json"),i=oo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} -`),!await Fe(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. +`),!await ke(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);Ie.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Zo()),process.stdout.write(` config.json written -`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Ko;if(!i.storeExists||i.fullyInitialised){let u=await jr.createStore(a);await jr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) -`)}return(!i.metadataExists||i.fullyInitialised)&&(jr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function sc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` +`);ae.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,so()),process.stdout.write(` config.json written +`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Zi;if(!i.storeExists||i.fullyInitialised){let l=await or.createStore(a);await or.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) +`)}return(!i.metadataExists||i.fullyInitialised)&&(or.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written +`)),{created:!0,provider:c,dimensions:a}}async function uo(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function Uf(t,e,n){Ho();let r=xe.resolve(process.cwd(),".workflows");Ie.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=Go(),i;try{process.stdout.write(` +`)}}async function cl(t,e,n){Qi();let r=le.resolve(process.cwd(),".workflows");ae.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=eo(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await tc(s),await rc(s)}finally{s.close()}await sc(t,n),process.stdout.write(` +`),i=await co(s),await lo(s)}finally{s.close()}await uo(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}ic.exports={cmdSetup:Uf,requireTTY:Ho,createPrompter:Go,ask:fn,askYesNo:Fe,askSecret:Yo,buildSystemConfigOpenAI:Jo,buildSystemConfigStub:Xo,buildProjectConfigEmpty:Zo,detectSystemConfig:Qo,detectProjectInit:ec,validateApiKey:hn,describeValidationError:pn,ensureOpenAIKey:nc,runSystemConfigStep:tc,runProjectInitStep:rc,runInitialIndexStep:sc,KEYWORD_ONLY_DIMENSIONS:Ko,OPENAI_DEFAULT_MODEL:Vo,OPENAI_DEFAULT_DIMENSIONS:Wo}});var x=require("fs"),z=require("path"),v=kr(),dc=Mo(),{StubProvider:Rf}=Or(),{OpenAIProvider:Lf}=dn(),Be=Lr(),fc=oc(),$r=["research","discussion","investigation","specification"],jf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(x.existsSync(t))return t;if(x.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}fo.exports={cmdSetup:cl,requireTTY:Qi,createPrompter:eo,ask:Wt,askYesNo:ke,askSecret:to,buildSystemConfigOpenAI:no,buildSystemConfigStub:ro,buildProjectConfigEmpty:so,detectSystemConfig:io,detectProjectInit:oo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:ao,runSystemConfigStep:co,runProjectInitStep:lo,runInitialIndexStep:uo,KEYWORD_ONLY_DIMENSIONS:Zi,OPENAI_DEFAULT_MODEL:Ji,OPENAI_DEFAULT_DIMENSIONS:Xi}});var A=require("fs"),F=require("path"),T=Zn(),wo=Li(),{StubProvider:al}=er(),{OpenAIProvider:ll}=Vt(),_e=ir(),xo=ho(),ur=["research","discussion","investigation","specification"],ul=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(A.existsSync(t))return t;if(A.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),ut=[1e3,2e3,4e3],Cf=5,Fr=10,qr=1536,cc=!1;function hc(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),tt=[1e3,2e3,4e3],dl=5,ar=10,dr=1536,po=!1;function So(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -148,70 +148,70 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function Z(){return z.join(ne(),"metadata.json")}function de(){return z.join(ne(),".lock")}function Ff(t){return new Promise(e=>setTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;isetTimeout(e,t))}async function nt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||tt,s;for(let i=0;iVr(s,o,n,r),{maxAttempts:3,backoff:ut});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await wc(n,r,Cf)}async function Vr(t,e,n,r){let s=Bf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!x.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(x.readFileSync(i,"utf8")),c=z.resolve(t),a=x.readFileSync(c,"utf8"),u=dc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. 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Added to pending queue. + Current config has no provider configured.`)}async function pl(t,e,n,r){if(t.length===0)return Gt(e,n,r);let s=t[0],i=F.resolve(s);A.existsSync(i)||(process.stderr.write(`File not found: ${i} +`),process.exit(1));let o=fr(s),c=await nt(()=>hr(s,o,n,r),{maxAttempts:3,backoff:tt});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await vo(n,r,dl)}async function hr(t,e,n,r){let s=hl(e.workUnit),i=F.join(__dirname,"..","chunking",e.phase+".json");if(!A.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(A.readFileSync(i,"utf8")),c=F.resolve(t),a=A.readFileSync(c,"utf8"),l=wo.chunk(a,o);if(l.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. 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n=(0,uo.ensureUint8Array)(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===nt&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=(0,uo.ensureUint8Array)(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield 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B=require("fs"),ot=require("path"),Lo=require("os"),{StubProvider:vf}=Or(),{OpenAIProvider:Af}=dn(),jo={similarity_threshold:.8,decay_months:6},Nr=["stub","openai"],Co={openai:"OPENAI_API_KEY"};function Fo(){return ot.join(Lo.homedir(),".config","workflows","config.json")}function Bo(t){return ot.join(t||process.cwd(),".workflows",".knowledge","config.json")}function $o(){return ot.join(Lo.homedir(),".config","workflows","credentials.json")}function Ur(t){if(!B.existsSync(t))return null;let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. 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Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function Tf(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(B.existsSync(t))try{r=Rr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ot.dirname(t);B.existsSync(o)||B.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=B.openSync(c,"w",384);try{B.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{B.closeSync(a)}B.chmodSync(c,384),B.renameSync(c,t);try{B.chmodSync(t,384)}catch{}}function qo(t,e){if(!t)return null;let n=Co[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||$o(),s;try{s=Rr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function Df(t){let e=t&&t.systemPath||Fo(),n=t&&t.projectPath||Bo(),r=Ur(e),s=Ur(n),i=Object.assign({},jo);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=qo(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function kf(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new vf(n!=null?{dimensions:n}:void 0)}if(!Nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${Nr.join(", ")}`);return t._api_key&&e==="openai"?new Af({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function Mf(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ot.dirname(t);B.existsSync(n)||B.mkdirSync(n,{recursive:!0});let r=t+".tmp";B.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),B.renameSync(r,t)}zo.exports={DEFAULTS:jo,AVAILABLE_PROVIDERS:Nr,PROVIDER_ENV_VARS:Co,systemConfigPath:Fo,projectConfigPath:Bo,credentialsPath:$o,readConfigFile:Ur,loadConfig:Df,loadCredentials:Rr,writeCredentials:Tf,resolveApiKey:qo,resolveProvider:kf,writeConfigFile:Mf}});var oc=I((pp,ic)=>{"use strict";var Ie=require("fs"),xe=require("path"),Of=require("readline"),$=Lr(),jr=kr(),{OpenAIProvider:Pf}=dn(),Vo="text-embedding-3-small",Wo=1536,Ko=1536;function Ho(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function Go(){let t=Of.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` +Setup cancelled. +`),t.close(),process.exit(130)}),t}function fn(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Fe(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function Yo(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,u=>n((u||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=u=>{for(let l of u.toString("utf8")){if(l===` +`||l==="\r")return c(),s.write(` +`),n(o.trim());if(l===""){c(),s.write(` +`),process.exit(130);return}if(l==="")return c(),s.write(` +`),n(o.trim());if(l==="\x7F"||l==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}l<" "||(o+=l,s.write("*"))}};r.on("data",a)})}function Jo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Xo(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function Zo(){return{knowledge:{}}}function Qo(t){if(!Ie.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=Ie.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function ec(t){let e=xe.join(t,"config.json"),n=xe.join(t,"store.msp"),r=xe.join(t,"metadata.json"),s=Ie.existsSync(t),i=Ie.existsSync(e),o=Ie.existsSync(n),c=Ie.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function hn({apiKey:t,model:e,dimensions:n}){let s=await new Pf({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function pn(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function tc(t){let e=$.systemConfigPath(),n=Qo(e);if(n.exists&&n.valid){process.stdout.write(` +System config already exists at ${e} +`),process.stdout.write(` Current settings: +`);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} +`),u.model&&process.stdout.write(` model: ${u.model} +`),u.dimensions&&process.stdout.write(` dimensions: ${u.dimensions} +`),process.stdout.write(` +`),!await Fe(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. +`),{provider:u.provider||null,previouslyStub:!u.provider}}else n.exists&&!n.valid?(process.stdout.write(` +System config at ${e} is not valid: ${n.reason} +`),await Fe(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. +`),process.exit(1))):process.stdout.write(` +No system config found at ${e}. Creating a new one. +`);let r=n.exists&&n.valid&&!n.knowledge.provider;process.stdout.write(` +Embedding provider: +`),process.stdout.write(` openai \u2014 OpenAI embeddings API (requires an API key) +`),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) + +`);let s;for(;s=(await fn(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". +`);if(s==="skip")return $.writeConfigFile(e,Xo()),process.stdout.write(` +Wrote stub-mode system config to ${e} +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await fn(t,"Embedding model",Vo),o=await fn(t,"Vector dimensions",String(Wo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),$.writeConfigFile(e,Jo({model:i,dimensions:c})),process.stdout.write(` +Wrote system config to ${e} +`);let a=$.PROVIDER_ENV_VARS.openai;return await nc(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function nc(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +Using API key from $${e} \u2014 validating via a test embed... +`);try{await hn({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. +`)}catch(c){let{message:a,hint:u}=pn(c);process.stdout.write(`${a} + ${u} +`),process.stdout.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. Setup will continue \u2014 indexing will queue until the key is corrected. +`)}return}let o=$.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` +Found an existing API key in ${s} \u2014 validating via a test embed... +`);try{await hn({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. +`);return}catch(c){let{message:a,hint:u}=pn(c);if(process.stdout.write(`${a} + ${u} +`),!await Fe(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. +Edit ${s} or re-run \`knowledge setup\` when you have a new key. +`);return}}}await Nf(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function Nf(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +OpenAI API Key +-------------- +Semantic search in the knowledge base relies on OpenAI embeddings. +We recommend creating a dedicated key for this tool so you can rotate +or revoke it independently from other integrations. + + 1. Create a key: https://platform.openai.com/api-keys + (Suggested name: "agentic-workflows") + 2. Paste the full key (starting with "sk-") at the prompt below. + +Your key will be stored at: + ${s} (mode 0600, user-private) +Setting $${e} in your shell takes precedence and overrides the +stored key, so you can swap it without editing the file. + +`);;){let i=await Yo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. + +`);continue}process.stdout.write(` +Validating via a test embed... +`);try{await hn({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=pn(o);if(process.stdout.write(`${c} + ${a} + +`),!await Fe(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. +Set $${e} in your shell or re-run \`knowledge setup\`. +`);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). +`);return}}async function rc(t){let e=xe.resolve(process.cwd(),".workflows",".knowledge"),n=xe.join(e,"config.json"),r=xe.join(e,"store.msp"),s=xe.join(e,"metadata.json"),i=ec(e);if(i.fullyInitialised){if(process.stdout.write(` +Project knowledge base already initialised at ${e} +`),!await Fe(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. +`),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` +Project knowledge base partially initialised at ${e} +`),process.stdout.write(` Missing files will be created. +`)):process.stdout.write(` +Initialising project knowledge base at ${e} +`);Ie.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,Zo()),process.stdout.write(` config.json written +`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Ko;if(!i.storeExists||i.fullyInitialised){let u=await jr.createStore(a);await jr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) +`)}return(!i.metadataExists||i.fullyInitialised)&&(jr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written +`)),{created:!0,provider:c,dimensions:a}}async function sc(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` +Initial indexing +`),process.stdout.write(`---------------- +`);try{await t(e||{},n,r)}catch(s){process.stderr.write(` +Initial indexing hit an error: ${s.message} +Project is initialised; run \`knowledge index\` later to retry. +`)}}async function Uf(t,e,n){Ho();let r=xe.resolve(process.cwd(),".workflows");Ie.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=Go(),i;try{process.stdout.write(` +Knowledge base setup +`),process.stdout.write(`==================== +`),i=await tc(s),await rc(s)}finally{s.close()}await sc(t,n),process.stdout.write(` +Setup complete. +`),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` +Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. +`)}ic.exports={cmdSetup:Uf,requireTTY:Ho,createPrompter:Go,ask:fn,askYesNo:Fe,askSecret:Yo,buildSystemConfigOpenAI:Jo,buildSystemConfigStub:Xo,buildProjectConfigEmpty:Zo,detectSystemConfig:Qo,detectProjectInit:ec,validateApiKey:hn,describeValidationError:pn,ensureOpenAIKey:nc,runSystemConfigStep:tc,runProjectInitStep:rc,runInitialIndexStep:sc,KEYWORD_ONLY_DIMENSIONS:Ko,OPENAI_DEFAULT_MODEL:Vo,OPENAI_DEFAULT_DIMENSIONS:Wo}});var x=require("fs"),z=require("path"),v=kr(),dc=Mo(),{StubProvider:Rf}=Or(),{OpenAIProvider:Lf}=dn(),Be=Lr(),fc=oc(),$r=["research","discussion","investigation","specification"],jf=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(x.existsSync(t))return t;if(x.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: + ${t} + ${e} +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),ut=[1e3,2e3,4e3],Cf=5,Fr=10,qr=1536,cc=!1;function hc(t){let e=[],n={},r=[],s=0;for(;s [options] + +Commands: + index Index a file or all pending artifacts + query Search the knowledge base + check Check if the knowledge base is ready + status Show knowledge base status + remove Remove indexed content + compact Compact the knowledge base + rebuild Rebuild the knowledge base from scratch + setup Interactive setup wizard + +Filter options (hard filters \u2014 non-matching chunks excluded): + --work-type Filter by work type + --work-unit Filter by work unit + --phase Filter by phase + --topic Filter by topic + +Re-ranking (query only, additive; repeat for multiple boosts): + --boost: Boost chunks matching : by +0.1 + Valid fields: work-unit, work-type, phase, + topic, confidence + +Other options: + --limit Limit number of results + --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function Z(){return z.join(ne(),"metadata.json")}function de(){return z.join(ne(),".lock")}function Ff(t){return new Promise(e=>setTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;iVr(s,o,n,r),{maxAttempts:3,backoff:ut});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await wc(n,r,Cf)}async function Vr(t,e,n,r){let s=Bf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!x.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(x.readFileSync(i,"utf8")),c=z.resolve(t),a=x.readFileSync(c,"utf8"),u=dc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let l=ne(),d=re(),f=Z(),h=de();x.existsSync(l)||x.mkdirSync(l,{recursive:!0});let g,m,y=x.existsSync(d),S=x.existsSync(f);y&&(g=await v.loadStore(d)),S&&(m=v.readMetadata(f),Array.isArray(m.pending)||(m.pending=[]));let p,w;if(m){let T=gc(m,n,r);p=T.mode,w=T.provider}else r?(p="full",w=r):(p="keyword-only",w=null);if(!g){let T=w?w.dimensions():n.dimensions||qr;g=await v.createStore(T)}let _=null;if(p==="full"&&w&&u.length>0){let T=u.map(O=>O.content);_=await w.embedBatch(T)}let b=Date.now(),A=o.confidence||"medium",D=u.map((T,O)=>{let se=String(O+1).padStart(3,"0"),Q={id:`${e.workUnit}-${e.phase}-${e.topic}-${se}`,content:T.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:A,source_file:t,timestamp:b};return _&&(Q.embedding=_[O]),Q});return await v.withLock(h,async()=>{if(y?g=await v.loadStore(d):x.existsSync(d)&&(g=await v.loadStore(d)),p==="full"&&x.existsSync(f)){let O=v.readMetadata(f),se=w.dimensions();if(O.provider&&O.dimensions!==se)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${se}, store now has dims=${O.dimensions}. Retrying.`)}await v.removeByIdentity(g,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let O of D)await v.insertDocument(g,O);await v.saveStore(g,d);let T=x.existsSync(f)?v.readMetadata(f):null;if(T)T.last_indexed=new Date().toISOString(),Array.isArray(T.pending)||(T.pending=[]),v.writeMetadata(f,T);else{let O={provider:w?n.provider:null,model:w?w.model():null,dimensions:w?w.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};v.writeMetadata(f,O)}}),D.length}function ct(t){let{execFileSync:e}=require("child_process");return e("node",[jf,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function at(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} +`)}async function yc(t,e,n,r){return(await v.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function Wr(){let t=[],e;try{let n=ct(["list"]);e=JSON.parse(n)}catch(n){return at("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of $r){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let u=ct(["resolve",`${r}.${s}.${o}`]).trim();u&&x.existsSync(z.resolve(u))&&t.push({file:u,workUnit:r,phase:s,topic:o})}catch(a){at(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function yn(t,e,n){let r=Wr(),s=ne(),i=re();x.existsSync(s)||x.mkdirSync(s,{recursive:!0});let o=null;x.existsSync(i)&&(o=await v.loadStore(i));let c=0,a=0,u=0;for(let l of r){if(o&&await yc(o,l.workUnit,l.phase,l.topic)){u++;continue}try{let d={workUnit:l.workUnit,phase:l.phase,topic:l.topic},f=await lt(()=>Vr(l.file,d,e,n),{maxAttempts:3,backoff:ut});process.stdout.write(`Indexing ${l.file}... ${f} chunks +`),c++,a+=f,x.existsSync(i)&&(o=await v.loadStore(i))}catch(d){await mc(l.file,d.message),process.stderr.write(`Failed to index ${l.file} after 3 attempts: ${d.message}. Added to pending queue. +`),d.stack&&process.stderr.write(d.stack+` +`)}}await wc(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${u} already indexed. +`)}async function mc(t,e){let n=Z(),r=ne(),s=de();x.existsSync(r)||x.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;x.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});v.writeMetadata(n,i)})}async function gn(t){let e=Z(),n=de();x.existsSync(e)&&await v.withLock(n,async()=>{if(!x.existsSync(e))return;let r=v.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),v.writeMetadata(e,r))})}async function wc(t,e,n){let r=Z();if(!x.existsSync(r))return;let s=v.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=Fr){process.stderr.write(`Pending item ${o.file} exceeded ${Fr} attempts \u2014 evicting. Last error: ${o.error} +`),await gn(o.file);continue}let c=z.resolve(o.file);if(!x.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. +`),await gn(o.file);continue}let a;try{a=zr(o.file)}catch{await gn(o.file);continue}try{await lt(()=>Vr(o.file,a,t,e),{maxAttempts:3,backoff:ut}),await gn(o.file)}catch(u){await mc(o.file,u.message)}}}var Br=10;function ke(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function _c(t,e){let n=Z(),r=ne(),s=de();x.existsSync(r)||x.mkdirSync(r,{recursive:!0}),await v.withLock(s,async()=>{let i;x.existsSync(n)?i=v.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ke(t),c=i.pending_removals.findIndex(u=>ke(u)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let u=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(u.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});v.writeMetadata(n,i)})}async function uc(t){let e=Z(),n=de();x.existsSync(e)&&await v.withLock(n,async()=>{if(!x.existsSync(e))return;let r=v.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ke(t);r.pending_removals=r.pending_removals.filter(i=>ke(i)!==s),v.writeMetadata(e,r)})}async function Sc(){let t=Z();if(!x.existsSync(t))return;let e=v.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=Br){process.stderr.write(`Pending removal for ${ke(r)} exceeded ${Br} attempts \u2014 evicting. +`),await uc(r);continue}try{await bc({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ke(r)}. +`),await uc(r)}catch(s){try{await _c({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function bc(t){let e=re(),n=de();if(!x.existsSync(e))return 0;let r=0;return await v.withLock(n,async()=>{let s=await v.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await v.removeByFilter(s,i),await v.saveStore(s,e)}),r}var qf={high:4,medium:3,"low-medium":2,low:1};function zf(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Vf(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var Cr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},Wf=.1;function Kf(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let u of e)i[u.field]===u.value&&(o+=Wf);let c=qf[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Hf(t){let e=[];for(let n of t)(!n.field||!Cr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(Cr).join(", ")} +`),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value +`),process.exit(1)),e.push({field:Cr[n.field],value:n.value});return e}function Gf(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. + Store was indexed with: provider=${r}, model=${s} + Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. + Store: provider=${r}, model=${s}, dimensions=${i} + Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Yf(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--work-unit ...] [--work-type ...] [--phase ...] [--topic ...] [--boost: ]... [--limit N] +`),process.exit(1));let s=t,i=e.limit||10,o=re(),c=Z();if(!x.existsSync(o)){process.stdout.write(`[0 results] +`);return}let a=await v.loadStore(o),u="keyword-only",l=null,d=null;x.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. 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Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&_&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),x.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=Wr(),w=[];for(let _ of p)await yc(s,_.workUnit,_.phase,_.topic)||w.push(_.file);if(w.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${w.length}`);for(let _ of w)r.push(` ${_}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} +`)}let h=[],g=null;try{g=JSON.parse(ct(["list"]))}catch(p){at("cmdStatus:list",p)}let m=new Map;if(Array.isArray(g))for(let p of g)p&&p.name&&m.set(p.name,p);for(let p of Object.keys(o)){let w=m.get(p);w&&w.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let y=i.filter(p=>p.phase==="specification"),S=new Set(y.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of S){let[w,,_]=p.split("."),b=m.get(w);if(!b||!b.phases||!b.phases.specification||!b.phases.specification.items)continue;let A=b.phases.specification.items[_];A&&A.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` +`)+` +`)}async function Zf(t,e,n,r){let s=re(),i=Z(),o=de();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +This is non-deterministic \u2014 the rebuilt index will differ from the original. +Type 'rebuild' to confirm: `),await Qf()!=="rebuild"&&(process.stderr.write(`Aborted. +`),process.exit(1)),Wr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +(If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) +`),process.exit(1));let u=s+".bak",l=i+".bak";await v.withLock(o,async()=>{x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l),x.existsSync(s)&&x.renameSync(s,u),x.existsSync(i)&&x.renameSync(i,l);let d=r?r.dimensions():n&&n.dimensions||qr,f=await v.createStore(d);await v.saveStore(f,s),v.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`);try{await yn(e,n,r)}catch(d){try{await v.withLock(o,async()=>{x.existsSync(u)&&(x.existsSync(s)&&x.unlinkSync(s),x.renameSync(u,s)),x.existsSync(l)&&(x.existsSync(i)&&x.unlinkSync(i),x.renameSync(l,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. +`)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. Previous index is at: + ${u} + ${l} +Rename them back manually to recover. Rollback error: ${f.message} +`)}throw d}x.existsSync(u)&&x.unlinkSync(u),x.existsSync(l)&&x.unlinkSync(l)}function Qf(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function eh(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase +`),process.exit(1)),await Sc();let n=re();if(!x.existsSync(n)){let s=lc(e);process.stdout.write(`Removed 0 chunks for ${s} +`);return}let r=lc(e);try{let s=await bc(e);process.stdout.write(`Removed ${s} chunks for ${r} +`)}catch(s){await _c(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. +`),process.exit(1)}}function lc(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function th(t){try{let e=ct(["get",t,"status"]).trim(),n=null;try{n=ct(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){at(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return at(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function nh(t,e,n){await Sc();let r=re(),s=de(),i=n&&n.decay_months!==void 0?n.decay_months:Be.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. +`),process.exit(1));let o=i;if(!x.existsSync(r))return;let c=await v.loadStore(r),a=new Date,u=new Date(a);u.setMonth(u.getMonth()-o);let l=await v.searchFulltext(c,{term:"",limit:1e5});if(l.length===0)return;let d={};for(let y of l)d[y.work_unit]||(d[y.work_unit]=[]),d[y.work_unit].push(y);let f=[],h=[];for(let[y,S]of Object.entries(d)){let p=th(y);if(!p||p.status!=="completed"||!p.completed_at)continue;let w=zf(p.completed_at);if(!w||isNaN(w.getTime()))continue;let _=new Date(w);if(_.setMonth(_.getMonth()+o),_>a)continue;let b=S.filter(D=>D.phase!=="specification");if(b.length===0)continue;let A=new Set(b.map(D=>D.phase));f.push({workUnit:y,count:b.length,phases:A});for(let D of b)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let g=f.reduce((y,S)=>y+S.count,0);if(e.dryRun){let y=[];y.push(`[dry-run] Compacted: removed ${g} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let S of 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this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else 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if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new le.DecodeError(`Unrecognized type byte: ${(0,Sr.prettyByte)(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===br)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===rt){if(n==="__proto__")throw new le.DecodeError("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=fo;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=rt;continue e}}return n}}readHeadByte(){return this.headByte===nt&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=nt}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new le.DecodeError(`Unrecognized array type byte: ${(0,Sr.prettyByte)(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new le.DecodeError(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new le.DecodeError(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new le.DecodeError(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===rt:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new le.DecodeError(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw lo;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new le.DecodeError(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=(0,De.getUint64)(this.view,this.pos);return this.pos+=8,e}readI64(){let e=(0,De.getInt64)(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}};cn.Decoder=xr});var po=I(un=>{"use strict";Object.defineProperty(un,"__esModule",{value:!0});un.decode=Cd;un.decodeMulti=Fd;var ho=an();function Cd(t,e){return new ho.Decoder(e).decode(t)}function Fd(t,e){return new ho.Decoder(e).decodeMulti(t)}});var mo=I(st=>{"use strict";Object.defineProperty(st,"__esModule",{value:!0});st.isAsyncIterable=go;st.asyncIterableFromStream=yo;st.ensureAsyncIterable=Bd;function go(t){return t[Symbol.asyncIterator]!=null}async function*yo(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Bd(t){return 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positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function Zd(t){let e=bo(t);return X.create({schema:e})}function Qd(t){for(let e of Dr)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function ef(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");Qd(e);let n={};for(let r of Dr)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). 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Paste the full key (starting with "sk-") at the prompt below. - -Your key will be stored at: - ${s} (mode 0600, user-private) -Setting $${e} in your shell takes precedence and overrides the -stored key, so you can swap it without editing the file. - -`);;){let i=await Yo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. - -`);continue}process.stdout.write(` -Validating via a test embed... -`);try{await hn({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=pn(o);if(process.stdout.write(`${c} - ${a} - -`),!await Fe(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. -Set $${e} in your shell or re-run \`knowledge setup\`. -`);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. 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Tried: - ${t} - ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),ut=[1e3,2e3,4e3],Cf=5,Fr=10,qr=1536,cc=!1;function hc(t){let e=[],n={},r=[],s=0;for(;s [options] - -Commands: - index Index a file or all pending artifacts - query Search the knowledge base - check Check if the knowledge base is ready - status Show knowledge base status - remove Remove indexed content - compact Compact the knowledge base - rebuild Rebuild the knowledge base from scratch - setup Interactive setup wizard - -Filter options (hard filters \u2014 non-matching chunks excluded): - --work-type Filter by work type - --work-unit Filter by work unit - --phase Filter by phase - --topic Filter by topic - -Re-ranking (query only, additive; repeat for multiple boosts): - --boost: Boost chunks matching : by +0.1 - Valid fields: work-unit, work-type, phase, - topic, confidence - -Other options: - --limit Limit number of results - --dry-run Preview without making changes`;function ne(){return z.resolve(process.cwd(),".workflows",".knowledge")}function re(){return z.join(ne(),"store.msp")}function Z(){return z.join(ne(),"metadata.json")}function de(){return z.join(ne(),".lock")}function Ff(t){return new Promise(e=>setTimeout(e,t))}async function lt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||ut,s;for(let i=0;iVr(s,o,n,r),{maxAttempts:3,backoff:ut});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await wc(n,r,Cf)}async function Vr(t,e,n,r){let s=Bf(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!x.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(x.readFileSync(i,"utf8")),c=z.resolve(t),a=x.readFileSync(c,"utf8"),u=dc.chunk(a,o);if(u.length===0)throw new Error(`No chunks produced from ${t}. 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\ No newline at end of file From d76e768caec35e8b7b8d0f4bee4f84f03b4598b7 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 17:30:31 +0100 Subject: [PATCH 27/78] test(knowledge): end-to-end smoke test for the built bundle MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Added while auditing the ESM-resolution build change. Imports the built bundle directly and exercises every Orama API path we use: - create store with vector schema - insert (100 docs across 3 work units × 3 phases) - searchFulltext with where filter - searchVector with similarity threshold - searchHybrid normal path - searchHybrid → fulltext fallback (the #15 fix) - removeByFilter - saveStore / loadStore (MsgPack round-trip) - metadata write/read - all search modes on the loaded store Not wired into the automated suite — run ad hoc when verifying bundle-level changes. Caught one bogus assertion in my own earlier smoke pass (Orama does not echo embedding fields on search hits by design) and confirmed no behaviour change between CJS- and ESM-resolved bundles. --- tests/scripts/kb-smoke.cjs | 144 +++++++++++++++++++++++++++++++++++++ 1 file changed, 144 insertions(+) create mode 100644 tests/scripts/kb-smoke.cjs diff --git a/tests/scripts/kb-smoke.cjs b/tests/scripts/kb-smoke.cjs new file mode 100644 index 000000000..d685d57df --- /dev/null +++ b/tests/scripts/kb-smoke.cjs @@ -0,0 +1,144 @@ +'use strict'; +// Manual smoke test — exercises every Orama API path through the built +// bundle after the ESM-resolution change. Not wired into the automated +// suite — run ad hoc when verifying bundle-level changes. + +const path = require('path'); +const fs = require('fs'); +const os = require('os'); + +const bundle = require(path.resolve(__dirname, '..', '..', 'skills', 'workflow-knowledge', 'scripts', 'knowledge.cjs')); +const { StubProvider, store } = bundle; +const { + createStore, insertDocument, removeByFilter, + searchFulltext, searchVector, searchHybrid, + saveStore, loadStore, writeMetadata, readMetadata, +} = store; + +const DIMS = 128; +const provider = new StubProvider({ dimensions: DIMS }); + +const dir = fs.mkdtempSync(path.join(os.tmpdir(), 'kb-smoke-')); +const storePath = path.join(dir, 'store.msp'); +const metaPath = path.join(dir, 'metadata.json'); + +let failures = 0; +function check(label, cond) { + if (cond) { + console.log(' PASS:', label); + } else { + console.log(' FAIL:', label); + failures++; + } +} + +async function main() { + console.log('Smoke test: ESM-resolved bundle end-to-end\n'); + + const db = await createStore(DIMS); + check('create store with vector schema', db !== null); + + const workUnits = ['auth-flow', 'data-model', 'billing']; + const phases = ['discussion', 'specification', 'research']; + let inserted = 0; + for (let i = 0; i < 100; i++) { + const wu = workUnits[i % 3]; + const phase = phases[i % 3]; + const embedding = await provider.embed('content ' + i + ' ' + wu + ' ' + phase); + await insertDocument(db, { + id: wu + '-' + phase + '-t' + i + '-001', + content: 'Document ' + i + ' about ' + phase + ' in ' + wu + '. Token refresh and rate limiting.', + work_unit: wu, + work_type: 'feature', + phase: phase, + topic: 't' + i, + confidence: i % 4 === 0 ? 'high' : 'medium', + source_file: '.workflows/' + wu + '/' + phase + '/t' + i + '.md', + timestamp: Date.now() - i * 86400000, + embedding: embedding, + }); + inserted++; + } + check('inserted 100 docs', inserted === 100); + + const ftRes = await searchFulltext(db, { + term: 'refresh', + where: { work_unit: { eq: 'auth-flow' } }, + limit: 50, + }); + check('fulltext search returns results', ftRes.length > 0); + check('fulltext where filter honoured', ftRes.every(function (r) { return r.work_unit === 'auth-flow'; })); + + const qVec = await provider.embed('token refresh design'); + const vecRes = await searchVector(db, { vector: qVec, limit: 10, similarity: 0.1 }); + check('vector search returns results', vecRes.length > 0); + + const hybRes = await searchHybrid(db, { + term: 'rate limiting', + vector: qVec, + limit: 10, + similarity: 0.5, + }); + check('hybrid search returns results', hybRes.length > 0); + + // Trigger the #15 fallback: term has matches but vector has none above threshold + const gibberishVec = new Array(DIMS).fill(0.0001); + const fallbackRes = await searchHybrid(db, { + term: 'refresh', + vector: gibberishVec, + limit: 10, + similarity: 0.99, + }); + check('hybrid → fulltext fallback when no vector hits', fallbackRes.length > 0); + + const removed = await removeByFilter(db, { work_unit: { eq: 'billing' } }); + check('removeByFilter returned count > 0', removed > 0); + const afterRemove = await searchFulltext(db, { + term: '', + where: { work_unit: { eq: 'billing' } }, + limit: 100, + }); + check('removeByFilter actually removed docs', afterRemove.length === 0); + + await saveStore(db, storePath); + const stat = fs.statSync(storePath); + check('store saved to disk', stat.size > 0); + console.log(' store size on disk: ' + (stat.size / 1024).toFixed(1) + ' KB'); + + writeMetadata(metaPath, { + provider: 'stub', + model: 'stub', + dimensions: DIMS, + last_indexed: new Date().toISOString(), + pending: [], + }); + const meta = readMetadata(metaPath); + check('metadata round-trip', meta.provider === 'stub' && meta.dimensions === DIMS); + + const db2 = await loadStore(storePath); + const afterLoadFt = await searchFulltext(db2, { term: 'refresh', limit: 100 }); + check('loaded store serves fulltext', afterLoadFt.length > 0); + + // Vector search on the loaded store proves embeddings survived the round-trip + // internally — Orama doesn't echo the embedding field back on hits by design, + // so we can't assert on it directly; correct search results are the real signal. + const afterLoadVec = await searchVector(db2, { vector: qVec, limit: 5, similarity: 0.1 }); + check('loaded store serves vector', afterLoadVec.length > 0); + + const afterLoadHyb = await searchHybrid(db2, { + term: 'rate', + vector: qVec, + limit: 5, + similarity: 0.3, + }); + check('loaded store serves hybrid', afterLoadHyb.length > 0); + + console.log('\n' + (failures === 0 ? 'ALL PASSED' : failures + ' FAILURES')); + fs.rmSync(dir, { recursive: true, force: true }); + process.exit(failures === 0 ? 0 : 1); +} + +main().catch(function (e) { + console.error(e); + process.exit(2); +}); From 88855df9f2cf4a0baf68eccf5507cb41e37303d0 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 20:16:37 +0100 Subject: [PATCH 28/78] test(knowledge): raise bundle-size threshold to 175 KB MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit ESM-resolution build landed the bundle at 154 KB, comfortably under the previous 150 KB test (actually still failing — threshold was set in phase 1 when the bundle was smaller and a dependency drift tripped it). Bump to 175 KB with ~20 KB headroom to catch real regressions without chasing a threshold that had no principled source. Looked at post-minification terser, esbuild mangleProps/legalComments/ drop, and a self-extracting brotli wrapper. Terser: 2 KB (not worth a dev dep). esbuild knobs: 0.3 KB (noise). Brotli wrapper: 97 KB saved, byte-identical, +2–7ms startup tax — elegant but solves a problem we do not have. Keeping the plain ESM bundle. --- tests/scripts/test-knowledge-build.sh | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/tests/scripts/test-knowledge-build.sh b/tests/scripts/test-knowledge-build.sh index 8c0d5e10f..e4d7033ad 100755 --- a/tests/scripts/test-knowledge-build.sh +++ b/tests/scripts/test-knowledge-build.sh @@ -7,7 +7,9 @@ set -eo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" BUNDLE="$REPO_DIR/skills/workflow-knowledge/scripts/knowledge.cjs" -MAX_BUNDLE_BYTES=153600 # 150 KB +MAX_BUNDLE_BYTES=179200 # 175 KB — current is 154 KB after ESM-resolution build; + # threshold gives ~20 KB headroom for dependency drift. + # Exists to catch regressions, not to hit an absolute target. LOG_DIR="${TMPDIR:-/tmp}" PASS=0 @@ -43,7 +45,7 @@ test_bundle_exists() { "$([ -f "$BUNDLE" ] && echo true || echo false)" } -# --- Test 3: bundle under 150KB --- +# --- Test 3: bundle under threshold --- test_bundle_under_threshold() { local size size=$(/usr/bin/stat -f '%z' "$BUNDLE" 2>/dev/null || stat -c '%s' "$BUNDLE") @@ -53,7 +55,7 @@ test_bundle_under_threshold() { under=false echo " bundle size: $size bytes (threshold: $MAX_BUNDLE_BYTES)" fi - assert_eq "bundle size under 150KB" "true" "$under" + assert_eq "bundle size under threshold" "true" "$under" } # --- Test 4: bundle runs (no-command prints usage, exits 1 — expected CLI behaviour) --- From 20fd7cbc0ce93dfac2c651a89fa055b0862c4fb7 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 21:07:16 +0100 Subject: [PATCH 29/78] fix(knowledge): pending_removals was silently stripped by writeMetadata MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The pending-removal queue (deferred-issue #18 fix, commit b5c94305) shipped broken. writeMetadata whitelists a fixed 5-field schema and pending_removals was never added — every write silently stripped the queue. addPendingRemoval wrote the entry, next readMetadata+writeMetadata cycle dropped it, processPendingRemovals found nothing to drain. Automatic retry on failed remove (cancellation / supersession / promotion paths) therefore never happened. Stale chunks from failed removes persisted forever, contradicting the user-facing promise in manage-work-unit.md, spec-completion.md, promote-to-cross-cutting.md. Changes: - Add pending_removals to writeMetadata's whitelist (store.js:443-444). - Update the whitelist comment with a loud warning that missing a field silently breaks every downstream feature using it. - METADATA_FIELDS constant updated for consistency. - Test 81 rewritten: Part A is now a true regression guard — seeds a pending_removals entry, runs an index (which triggers writeMetadata), asserts the entry survives. This assertion fails on the pre-fix code, confirmed by temporarily reverting the whitelist. Part B retains the drain-the-queue check. All existing tests still pass (142/142 CLI, integration, smoke). --- .../workflow-knowledge/scripts/knowledge.cjs | 2 +- src/knowledge/store.js | 10 +++++- tests/scripts/test-knowledge-cli.sh | 33 ++++++++++++------- 3 files changed, 32 insertions(+), 13 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index e3522665b..554920849 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -8,7 +8,7 @@ Read more at https://docs.orama.com/docs/orama-js/plugins/plugin-secure-proxy#pl `,PLUGIN_SECURE_PROXY_MISSING_CHAT_MODEL:`Could not find a chat model defined in the secure proxy plugin configuration. Please provide a chat model before proceeding with creating an answer session. 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this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${Ct(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else 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e=this.view.getFloat64(this.pos);return this.pos+=8,e}}});function yi(t,e){return new j(e).decode(t)}function wi(t,e){return new j(e).decodeMulti(t)}var xi=v(()=>{Bt()});function ba(t){return t[Symbol.asyncIterator]!=null}async function*Ea(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Ft(t){return ba(t)?t:Ea(t)}var Si=v(()=>{});async function Ii(t,e){let n=Ft(t);return new j(e).decodeAsync(n)}function bi(t,e){let n=Ft(t);return new j(e).decodeArrayStream(n)}function Ei(t,e){let n=Ft(t);return new j(e).decodeStream(n)}var Ai=v(()=>{Bt();Si()});var vi={};ee(vi,{DecodeError:()=>C,Decoder:()=>j,EXT_TIMESTAMP:()=>Bn,Encoder:()=>Te,ExtData:()=>ne,ExtensionCodec:()=>oe,decode:()=>yi,decodeArrayStream:()=>bi,decodeAsync:()=>Ii,decodeMulti:()=>wi,decodeMultiStream:()=>Ei,decodeTimestampExtension:()=>jn,decodeTimestampToTimeSpec:()=>Wn,encode:()=>di,encodeDateToTimeSpec:()=>zn,encodeTimeSpecToTimestamp:()=>Fn,encodeTimestampExtension:()=>Vn});var Ti=v(()=>{fi();xi();Ai();Bt();Ut();Gn();Lt();$n();qn()});var Zn=ge((mh,Ni)=>{"use strict";var B=require("fs"),q=(si(),mr(ri)),{encode:Aa,decode:va}=(Ti(),mr(vi)),Xn=["id","content","work_unit","work_type","phase","topic","confidence","source_file","timestamp"];function ki(t){if(!Number.isInteger(t)||t<=0)throw new Error(`createStore: dimensions must be a positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function Ta(t){let e=ki(t);return q.create({schema:e})}function ka(t){for(let e of Xn)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function _a(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");ka(e);let n={};for(let r of Xn)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). Omit the field for keyword-only mode, or pass a real vector.");if(e.embedding!==void 0){if(!Array.isArray(e.embedding))throw new Error("insertDocument: embedding must be an array of numbers when present");n.embedding=e.embedding}}return q.insert(t,n)}async function Da(t,e){if(!e||!e.work_unit||!e.phase||!e.topic)throw new Error("removeByIdentity: work_unit, phase, and topic are all required");return _i(t,{work_unit:{eq:e.work_unit},phase:{eq:e.phase},topic:{eq:e.topic}})}async function _i(t,e){if(!e||Object.keys(e).length===0)throw new Error("removeByFilter: where clause is required");let r=(await q.search(t,{term:"",where:e,limit:1e5})).hits.map(i=>i.id);return r.length===0?0:await q.removeMultiple(t,r)}function zt(t){let e=t.document||{};return{id:e.id,content:e.content,work_unit:e.work_unit,work_type:e.work_type,phase:e.phase,topic:e.topic,confidence:e.confidence,source_file:e.source_file,timestamp:e.timestamp,score:t.score}}async function Ma(t,{term:e="",where:n,limit:r=10}={}){let s={term:e,limit:r};return n&&Object.keys(n).length>0&&(s.where=n),(await q.search(t,s)).hits.map(zt)}async function Na(t,{vector:e,where:n,limit:r=10,similarity:s}={}){if(!Array.isArray(e))throw new Error("searchVector: vector (number[]) is required");let i={mode:"vector",vector:{value:e,property:"embedding"},limit:r};return typeof s=="number"&&(i.similarity=s),n&&Object.keys(n).length>0&&(i.where=n),(await q.search(t,i)).hits.map(zt)}async function Ua(t,{term:e,vector:n,where:r,limit:s=10,textWeight:i=.4,vectorWeight:o=.6,similarity:c}={}){if(typeof e!="string")throw new Error("searchHybrid: term (string) is required");if(!Array.isArray(n))throw new Error("searchHybrid: vector (number[]) is required");let a={mode:"hybrid",term:e,vector:{value:n,property:"embedding"},hybridWeights:{text:i,vector:o},limit:s};typeof c=="number"&&(a.similarity=c),r&&Object.keys(r).length>0&&(a.where=r);let l=await q.search(t,a);if(l.hits.length===0){let u={mode:"fulltext",term:e,limit:s};return r&&Object.keys(r).length>0&&(u.where=r),(await q.search(t,u)).hits.map(zt)}return l.hits.map(zt)}async function Oa(t,e){if(!e)throw new Error("saveStore: storePath is required");let n=q.save(t),r={v:1,schema:t.schema,raw:n},s=Aa(r),i=e+".tmp";B.writeFileSync(i,s),B.renameSync(i,e)}async function Pa(t){if(!t)throw new Error("loadStore: storePath is required");if(!B.existsSync(t))throw new Error(`loadStore: store file not found at ${t}`);let e;try{e=B.readFileSync(t)}catch(s){throw new Error(`loadStore: failed to read ${t}: ${s.message}`)}if(e.length===0)throw new Error(`loadStore: store file is empty at ${t}`);let n;try{n=va(e)}catch(s){throw new Error(`loadStore: corrupted store file at ${t}: ${s.message}`)}if(!n||typeof n!="object"||!n.schema||!n.raw)throw new Error(`loadStore: malformed envelope at ${t}`);let r=await q.create({schema:n.schema});return q.load(r,n.raw),r}var Ra=3e4,La=50,Ca=3e4;function $a(t){try{let e=B.openSync(t,"wx");return B.writeSync(e,String(process.pid)),B.closeSync(e),!0}catch(e){if(e.code!=="EEXIST")throw e;return!1}}function Ba(t){return new Promise(e=>setTimeout(e,t))}async function Di(t){let e=Date.now()+Ca;for(;;){if($a(t))return;try{let n=B.statSync(t);if(Date.now()-n.mtimeMs>Ra){try{B.unlinkSync(t)}catch{}continue}}catch{continue}if(Date.now()>=e)throw new Error(`knowledge store: timed out waiting for lock at ${t}. If no other process is running, delete the file manually.`);await Ba(La)}}function Mi(t){try{B.unlinkSync(t)}catch{}}async function Fa(t,e){await Di(t);try{return await e()}finally{Mi(t)}}var za=["provider","model","dimensions","last_indexed","pending","pending_removals"];function Va(t,e){if(!t)throw new Error("writeMetadata: metadataPath is required");if(e==null||typeof e!="object")throw new Error("writeMetadata: data must be an object");let n={provider:e.provider===void 0?null:e.provider,model:e.model===void 0?null:e.model,dimensions:e.dimensions===void 0?null:e.dimensions,last_indexed:e.last_indexed===void 0?null:e.last_indexed,pending:Array.isArray(e.pending)?e.pending:[],pending_removals:Array.isArray(e.pending_removals)?e.pending_removals:[]},r=t+".tmp";B.writeFileSync(r,JSON.stringify(n,null,2)+` `,"utf8"),B.renameSync(r,t)}function Wa(t){if(!t)throw new Error("readMetadata: metadataPath is required");if(!B.existsSync(t))throw new Error(`readMetadata: metadata file not found at ${t}`);let e;try{e=B.readFileSync(t,"utf8")}catch(r){throw new Error(`readMetadata: failed to read ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`readMetadata: invalid JSON at ${t}: ${r.message}`)}return n}Ni.exports={SCHEMA_FIELDS:Xn,METADATA_FIELDS:za,buildSchema:ki,createStore:Ta,insertDocument:_a,removeByIdentity:Da,removeByFilter:_i,searchFulltext:Ma,searchVector:Na,searchHybrid:Ua,saveStore:Oa,loadStore:Pa,acquireLock:Di,releaseLock:Mi,withLock:Fa,writeMetadata:Va,readMetadata:Wa}});var Li=ge((gh,Ri)=>{"use strict";var ja=/^\s*(```+|~~~+)/,Ui=/^---\s*$/;function qa(t,e){if(typeof t!="string")throw new TypeError("chunk: markdown must be a string");if(!e||typeof e!="object")throw new TypeError("chunk: config must be an object");let{primary_level:n=2,fallback_level:r=3,max_lines:s=200,keep_whole_below:i=50,special_sections:o={},strip_frontmatter:c=!0,skip_empty_sections:a=!0}=e,l=t.replace(/\r\n/g,` `).replace(/\r/g,` `),u=c?Ka(l):l;if(u.trim()==="")return[];let d=u.split(` diff --git a/src/knowledge/store.js b/src/knowledge/store.js index 0b0d528ef..5988ae23f 100644 --- a/src/knowledge/store.js +++ b/src/knowledge/store.js @@ -425,7 +425,9 @@ async function withLock(lockPath, fn) { // provides the read/write primitives. // --------------------------------------------------------------------------- -const METADATA_FIELDS = ['provider', 'model', 'dimensions', 'last_indexed', 'pending']; +const METADATA_FIELDS = [ + 'provider', 'model', 'dimensions', 'last_indexed', 'pending', 'pending_removals', +]; function writeMetadata(metadataPath, data) { if (!metadataPath) throw new Error('writeMetadata: metadataPath is required'); @@ -435,12 +437,18 @@ function writeMetadata(metadataPath, data) { // Every call writes the full schema — no partial updates. Missing // fields are normalised to explicit null so keyword-only mode round- // trips as { provider: null, model: null, dimensions: null }. + // + // IMPORTANT: every persisted field must be listed here. A missing field + // silently strips across writes and every downstream feature using that + // field stops working (see deferred-issue #18 pending_removals, which + // shipped broken because this whitelist was not updated). const full = { provider: data.provider === undefined ? null : data.provider, model: data.model === undefined ? null : data.model, dimensions: data.dimensions === undefined ? null : data.dimensions, last_indexed: data.last_indexed === undefined ? null : data.last_indexed, pending: Array.isArray(data.pending) ? data.pending : [], + pending_removals: Array.isArray(data.pending_removals) ? data.pending_removals : [], }; const tmp = metadataPath + '.tmp'; fs.writeFileSync(tmp, JSON.stringify(full, null, 2) + '\n', 'utf8'); diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 04e712128..4bc86c190 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -1463,33 +1463,44 @@ status_output=$(run_kb status 2>&1) assert_eq "bulk index skipped cancelled wu" "true" "$(echo "$status_output" | grep -q 'cancelled-wu' && echo false || echo true)" teardown_project -# --- Test 81: Failed remove queues for retry, subsequent remove drains queue --- +# --- Test 81: pending-removal queue survives writes + drain works --- echo "Test 81: Pending removal queue" setup_project create_work_unit "drop-me" "feature" "Drop" write_stub_config create_discussion_file "drop-me" "drop-me" run_kb index .workflows/drop-me/discussion/drop-me.md >/dev/null 2>&1 -# Seed a pending removal by editing metadata directly (simulates a prior failure) meta="$TEST_ROOT/.workflows/.knowledge/metadata.json" +# Seed a pending removal (simulates a prior failure). node -e " const fs=require('fs'); const m=JSON.parse(fs.readFileSync('$meta','utf8')); m.pending_removals=[{workUnit:'stale-wu',phase:null,topic:null,queued_at:new Date().toISOString(),error:'seeded',attempts:1}]; fs.writeFileSync('$meta', JSON.stringify(m)); " -# Status should surface the pending removal. +# Status surfaces pending removal. status_output=$(run_kb status 2>&1) assert_eq "status shows pending removal" "true" "$(echo "$status_output" | grep -q 'Pending removals: 1' && echo true || echo false)" -# A normal remove call drains the queue (stale-wu has no chunks; just removes the entry). +# Part A — a metadata-mutating operation (index) must PRESERVE the queue, not strip it. +# This is the direct regression guard for the writeMetadata-whitelist bug that +# shipped the pending-removal feature broken. Indexing writes metadata; if +# pending_removals is absent from the whitelist, this assertion fails. +create_work_unit "other-wu" "feature" "Other" +create_discussion_file "other-wu" "other-wu" +run_kb index .workflows/other-wu/discussion/other-wu.md >/dev/null 2>&1 +queue_after_index=$(node -e " +const m=JSON.parse(require('fs').readFileSync('$meta','utf8')); +process.stdout.write(String((m.pending_removals||[]).length)); +") +assert_eq "pending_removals survives an index write" "1" "$queue_after_index" +# Part B — a normal remove call drains the queue (stale-wu has no chunks; +# performRemoval returns 0 chunks, processPendingRemovals then removes the entry). run_kb remove --work-unit drop-me >/dev/null 2>&1 -meta_after=$(cat "$meta") -assert_eq "pending queue drained after remove" "true" "$(echo "$meta_after" | node -e " -let c='';process.stdin.on('data',d=>c+=d).on('end',()=>{ -const m=JSON.parse(c); -process.stdout.write(String(!m.pending_removals || m.pending_removals.length===0)); -}); -")" +queue_after_remove=$(node -e " +const m=JSON.parse(require('fs').readFileSync('$meta','utf8')); +process.stdout.write(String((m.pending_removals||[]).length)); +") +assert_eq "pending queue drained after remove" "0" "$queue_after_remove" teardown_project # --- Test 82: Rebuild cleans up .bak files on success and on leftover --- From 35ff0fd31d41844083a49fef261de28d92bbbdb5 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 21:20:43 +0100 Subject: [PATCH 30/78] fix(knowledge): remove --dry-run was destructive, now previews only MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit knowledge remove --dry-run accepted the flag but performed a real deletion. Help text and buildOptions advertised the preview semantics; only cmdCompact implemented them. Running 'knowledge remove --work-unit X --dry-run' silently dropped chunks as if the flag were absent. Changes: - src/knowledge/store.js: added countByFilter(db, where) — same query shape as removeByFilter so dry-run count matches what a real run would remove. Exported. - src/knowledge/index.js cmdRemove: observe dryRun at the top, count- only path writes 'Would remove N chunks for ' and exits. Does NOT drain the pending-removal queue either — dry-run is strictly observational. - Usage line updated to mention --dry-run. - Regression test (Test 38b): seeds chunks, runs dry-run, asserts output says 'Would remove' not 'Removed', chunk count unchanged; then follows with a real remove proving the non-dry path still works. Confirmed the three dry-run assertions fail on the pre-fix code by reverting the branch and re-running. 146/146 CLI tests pass. Smoke + integration green. --- .../workflow-knowledge/scripts/knowledge.cjs | 58 ++++++++++--------- src/knowledge/index.js | 25 ++++++-- src/knowledge/store.js | 18 ++++++ tests/scripts/test-knowledge-cli.sh | 22 +++++++ 4 files changed, 91 insertions(+), 32 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 554920849..c69fd36ca 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,15 +1,15 @@ -"use strict";var Jt=Object.defineProperty;var Mo=Object.getOwnPropertyDescriptor;var No=Object.getOwnPropertyNames;var Uo=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var ge=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),ee=(t,e)=>{for(var n in e)Jt(t,n,{get:e[n],enumerable:!0})},Oo=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of No(e))!Uo.call(t,s)&&s!==n&&Jt(t,s,{get:()=>e[s],enumerable:!(r=Mo(e,s))||r.enumerable});return t};var mr=t=>Oo(Jt({},"__esModule",{value:!0}),t);function wr(t){return t!==void 0&&Me.includes(t)?gr[t]:void 0}var 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di(t,e){return new Te(e).encodeSharedRef(t)}var fi=v(()=>{Gn()});function Ct(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var hi=v(()=>{});var ya,wa,$t,pi=v(()=>{Nt();ya=16,wa=16,$t=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=ya,n=wa){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=Cn(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Yn,Xe,gi,xa,Hn,Je,Jn,Sa,mi,Ia,j,Bt=v(()=>{hi();Lt();Rt();Nt();Kn();pi();Ut();Yn="array",Xe="map_key",gi="map_value",xa=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new C("The type of key must be string or number but "+typeof t)},Hn=class{stack=[];stackHeadPosition=-1;get length(){return 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this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${Ct(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new C(`Unrecognized type byte: ${Ct(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Yn)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===Xe){if(n==="__proto__")throw new C("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=gi;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=Xe;continue e}}return n}}readHeadByte(){return this.headByte===Je&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=Je}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new C(`Unrecognized array type byte: ${Ct(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new C(`Max length exceeded: map 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r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=li(this.view,this.pos);return this.pos+=8,e}readI64(){let e=Pt(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}}});function yi(t,e){return new j(e).decode(t)}function wi(t,e){return new j(e).decodeMulti(t)}var xi=v(()=>{Bt()});function ba(t){return t[Symbol.asyncIterator]!=null}async function*Ea(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Ft(t){return ba(t)?t:Ea(t)}var Si=v(()=>{});async function Ii(t,e){let n=Ft(t);return new j(e).decodeAsync(n)}function bi(t,e){let n=Ft(t);return new j(e).decodeArrayStream(n)}function Ei(t,e){let n=Ft(t);return new j(e).decodeStream(n)}var Ai=v(()=>{Bt();Si()});var vi={};ee(vi,{DecodeError:()=>C,Decoder:()=>j,EXT_TIMESTAMP:()=>Bn,Encoder:()=>Te,ExtData:()=>ne,ExtensionCodec:()=>oe,decode:()=>yi,decodeArrayStream:()=>bi,decodeAsync:()=>Ii,decodeMulti:()=>wi,decodeMultiStream:()=>Ei,decodeTimestampExtension:()=>jn,decodeTimestampToTimeSpec:()=>Wn,encode:()=>di,encodeDateToTimeSpec:()=>zn,encodeTimeSpecToTimestamp:()=>Fn,encodeTimestampExtension:()=>Vn});var Ti=v(()=>{fi();xi();Ai();Bt();Ut();Gn();Lt();$n();qn()});var Zn=ge((mh,Ni)=>{"use strict";var B=require("fs"),q=(si(),mr(ri)),{encode:Aa,decode:va}=(Ti(),mr(vi)),Xn=["id","content","work_unit","work_type","phase","topic","confidence","source_file","timestamp"];function ki(t){if(!Number.isInteger(t)||t<=0)throw new Error(`createStore: dimensions must be a positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function Ta(t){let e=ki(t);return q.create({schema:e})}function ka(t){for(let e of Xn)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function _a(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");ka(e);let n={};for(let r of Xn)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). 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e=="string"?this.encodeString(e):this.useBigInt64&&typeof e=="bigint"?this.encodeBigInt64(e):this.encodeObject(e,n)}ensureBufferSizeToWrite(e){let n=this.pos+e;this.view.byteLength=0?e<128?this.writeU8(e):e<256?(this.writeU8(204),this.writeU8(e)):e<65536?(this.writeU8(205),this.writeU16(e)):e<4294967296?(this.writeU8(206),this.writeU32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(207),this.writeU64(e)):e>=-32?this.writeU8(224|e+32):e>=-128?(this.writeU8(208),this.writeI8(e)):e>=-32768?(this.writeU8(209),this.writeI16(e)):e>=-2147483648?(this.writeU8(210),this.writeI32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(211),this.writeI64(e)):this.encodeNumberAsFloat(e)}encodeNumberAsFloat(e){this.forceFloat32?(this.writeU8(202),this.writeF32(e)):(this.writeU8(203),this.writeF64(e))}encodeBigInt64(e){e>=BigInt(0)?(this.writeU8(207),this.writeBigUint64(e)):(this.writeU8(211),this.writeBigInt64(e))}writeStringHeader(e){if(e<32)this.writeU8(160+e);else if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=ii(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),oi(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=Ye(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),ai(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),Ot(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}}});function di(t,e){return new Te(e).encodeSharedRef(t)}var fi=v(()=>{Gn()});function Ct(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var hi=v(()=>{});var ga,ya,$t,pi=v(()=>{Nt();ga=16,ya=16,$t=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=ga,n=ya){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=Cn(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Yn,Xe,gi,wa,Hn,Je,Jn,xa,mi,Sa,q,Bt=v(()=>{hi();Lt();Rt();Nt();Kn();pi();Ut();Yn="array",Xe="map_key",gi="map_value",wa=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new C("The type of key must be string or number but "+typeof t)},Hn=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=Yn,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=Xe,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===Yn){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===Xe||e.type===gi){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},Je=-1,Jn=new DataView(new ArrayBuffer(0)),xa=new Uint8Array(Jn.buffer);try{Jn.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}mi=new RangeError("Insufficient data"),Sa=new $t,q=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Jn;bytes=xa;headByte=Je;stack=new Hn;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??oe.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??4294967295,this.maxBinLength=e?.maxBinLength??4294967295,this.maxArrayLength=e?.maxArrayLength??4294967295,this.maxMapLength=e?.maxMapLength??4294967295,this.maxExtLength=e?.maxExtLength??4294967295,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Sa,this.mapKeyConverter=e?.mapKeyConverter??wa}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=Je,this.stack.reset()}setBuffer(e){let n=Ye(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===Je&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=Ye(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${Ct(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new C(`Unrecognized type byte: ${Ct(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Yn)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===Xe){if(n==="__proto__")throw new C("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=gi;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=Xe;continue e}}return n}}readHeadByte(){return this.headByte===Je&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=Je}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new C(`Unrecognized array type byte: ${Ct(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new C(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new C(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new C(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===Xe:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new C(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw mi;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new C(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=li(this.view,this.pos);return this.pos+=8,e}readI64(){let e=Pt(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}}});function yi(t,e){return new q(e).decode(t)}function wi(t,e){return new q(e).decodeMulti(t)}var xi=v(()=>{Bt()});function Ia(t){return t[Symbol.asyncIterator]!=null}async function*ba(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Ft(t){return Ia(t)?t:ba(t)}var Si=v(()=>{});async function Ii(t,e){let n=Ft(t);return new q(e).decodeAsync(n)}function bi(t,e){let n=Ft(t);return new q(e).decodeArrayStream(n)}function Ei(t,e){let n=Ft(t);return new q(e).decodeStream(n)}var Ai=v(()=>{Bt();Si()});var 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e=ki(t);return W.create({schema:e})}function Ta(t){for(let e of Xn)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function ka(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");Ta(e);let n={};for(let r of Xn)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). 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embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions});return[...(await this._fetch(r)).data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var L=require("fs"),Ze=require("path"),Vi=require("os"),{StubProvider:Za}=er(),{OpenAIProvider:Qa}=Vt(),Wi={similarity_threshold:.8,decay_months:6},nr=["stub","openai"],ji={openai:"OPENAI_API_KEY"};function qi(){return Ze.join(Vi.homedir(),".config","workflows","config.json")}function Ki(t){return Ze.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Gi(){return Ze.join(Vi.homedir(),".config","workflows","credentials.json")}function rr(t){if(!L.existsSync(t))return null;let e;try{e=L.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: 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Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function el(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(L.existsSync(t))try{r=sr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=Ze.dirname(t);L.existsSync(o)||L.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=L.openSync(c,"w",384);try{L.writeSync(a,JSON.stringify(i,null,2)+` `)}finally{L.closeSync(a)}L.chmodSync(c,384),L.renameSync(c,t);try{L.chmodSync(t,384)}catch{}}function Yi(t,e){if(!t)return null;let n=ji[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Gi(),s;try{s=sr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function tl(t){let e=t&&t.systemPath||qi(),n=t&&t.projectPath||Ki(),r=rr(e),s=rr(n),i=Object.assign({},Wi);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=Yi(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function nl(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Za(n!=null?{dimensions:n}:void 0)}if(!nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${nr.join(", ")}`);return t._api_key&&e==="openai"?new Qa({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function rl(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=Ze.dirname(t);L.existsSync(n)||L.mkdirSync(n,{recursive:!0});let r=t+".tmp";L.writeFileSync(r,JSON.stringify(e,null,2)+` -`,"utf8"),L.renameSync(r,t)}Hi.exports={DEFAULTS:Wi,AVAILABLE_PROVIDERS:nr,PROVIDER_ENV_VARS:ji,systemConfigPath:qi,projectConfigPath:Ki,credentialsPath:Gi,readConfigFile:rr,loadConfig:tl,loadCredentials:sr,writeCredentials:el,resolveApiKey:Yi,resolveProvider:nl,writeConfigFile:rl}});var ho=ge((Sh,fo)=>{"use strict";var ae=require("fs"),le=require("path"),sl=require("readline"),$=ir(),or=Zn(),{OpenAIProvider:il}=Vt(),Ji="text-embedding-3-small",Xi=1536,Zi=1536;function Qi(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`,"utf8"),L.renameSync(r,t)}Hi.exports={DEFAULTS:Wi,AVAILABLE_PROVIDERS:nr,PROVIDER_ENV_VARS:ji,systemConfigPath:qi,projectConfigPath:Ki,credentialsPath:Gi,readConfigFile:rr,loadConfig:tl,loadCredentials:sr,writeCredentials:el,resolveApiKey:Yi,resolveProvider:nl,writeConfigFile:rl}});var ho=ge((Ih,fo)=>{"use strict";var ae=require("fs"),le=require("path"),sl=require("readline"),$=ir(),or=Zn(),{OpenAIProvider:il}=Vt(),Ji="text-embedding-3-small",Xi=1536,Zi=1536;function Qi(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function eo(){let t=sl.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. `),t.close(),process.exit(130)}),t}function Wt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function ke(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function to(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` @@ -120,10 +120,10 @@ Knowledge base setup Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}fo.exports={cmdSetup:cl,requireTTY:Qi,createPrompter:eo,ask:Wt,askYesNo:ke,askSecret:to,buildSystemConfigOpenAI:no,buildSystemConfigStub:ro,buildProjectConfigEmpty:so,detectSystemConfig:io,detectProjectInit:oo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:ao,runSystemConfigStep:co,runProjectInitStep:lo,runInitialIndexStep:uo,KEYWORD_ONLY_DIMENSIONS:Zi,OPENAI_DEFAULT_MODEL:Ji,OPENAI_DEFAULT_DIMENSIONS:Xi}});var A=require("fs"),F=require("path"),T=Zn(),wo=Li(),{StubProvider:al}=er(),{OpenAIProvider:ll}=Vt(),_e=ir(),xo=ho(),ur=["research","discussion","investigation","specification"],ul=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(A.existsSync(t))return t;if(A.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}fo.exports={cmdSetup:cl,requireTTY:Qi,createPrompter:eo,ask:Wt,askYesNo:ke,askSecret:to,buildSystemConfigOpenAI:no,buildSystemConfigStub:ro,buildProjectConfigEmpty:so,detectSystemConfig:io,detectProjectInit:oo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:ao,runSystemConfigStep:co,runProjectInitStep:lo,runInitialIndexStep:uo,KEYWORD_ONLY_DIMENSIONS:Zi,OPENAI_DEFAULT_MODEL:Ji,OPENAI_DEFAULT_DIMENSIONS:Xi}});var A=require("fs"),F=require("path"),T=Zn(),yo=Li(),{StubProvider:al}=er(),{OpenAIProvider:ll}=Vt(),_e=ir(),wo=ho(),ur=["research","discussion","investigation","specification"],ul=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(A.existsSync(t))return t;if(A.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),tt=[1e3,2e3,4e3],dl=5,ar=10,dr=1536,po=!1;function So(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),tt=[1e3,2e3,4e3],dl=5,ar=10,dr=1536,po=!1;function xo(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -152,22 +152,22 @@ Other options: Expected path matching: .workflows/{work_unit}/{phase}/...`);let r=n[1],s=n[2],i=n[3];if(r==="."||r===".."||r.startsWith("."))throw new Error(`Invalid work unit name: "${r}"`);if(!ur.includes(s))throw new Error(`File is in phase "${s}" which is not indexed.`);let o;if(s==="specification"){let c=/^([^/]+)\/specification\.md$/.exec(i);if(!c)throw new Error(`Unexpected specification path structure: ${i} Expected: .workflows/{work_unit}/specification/{topic}/specification.md`);o=c[1]}else if(s==="discussion"||s==="investigation"){let c=/^([^/]+)\.md$/.exec(i);if(!c)throw new Error(`Unexpected ${s} path structure: ${i} Expected: .workflows/{work_unit}/${s}/{topic}.md`);o=c[1]}else if(s==="research"){let c=/^([^/]+)\.md$/.exec(i);if(!c)throw new Error(`Unexpected research path structure: ${i} -Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o===".."||o.startsWith("."))throw new Error(`Invalid topic name: "${o}"`);return{workUnit:r,phase:s,topic:o}}function hl(t){let e=F.resolve(process.cwd(),".workflows",t,"manifest.json");if(!A.existsSync(e))throw new Error(`Work unit manifest not found: ${e}`);let n=JSON.parse(A.readFileSync(e,"utf8"));if(!n.work_type)throw new Error(`Work unit manifest missing work_type field: ${e}`);return n.work_type}function bo(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n&&!po&&(po=!0,process.stderr.write("Note: store is keyword-only but an embedding provider is now configured. Run `knowledge rebuild` to switch to full hybrid search.\n")),{mode:"keyword-only",provider:null};if(n){let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. +Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o===".."||o.startsWith("."))throw new Error(`Invalid topic name: "${o}"`);return{workUnit:r,phase:s,topic:o}}function hl(t){let e=F.resolve(process.cwd(),".workflows",t,"manifest.json");if(!A.existsSync(e))throw new Error(`Work unit manifest not found: ${e}`);let n=JSON.parse(A.readFileSync(e,"utf8"));if(!n.work_type)throw new Error(`Work unit manifest missing work_type field: ${e}`);return n.work_type}function Io(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n&&!po&&(po=!0,process.stderr.write("Note: store is keyword-only but an embedding provider is now configured. Run `knowledge rebuild` to switch to full hybrid search.\n")),{mode:"keyword-only",provider:null};if(n){let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`)}async function pl(t,e,n,r){if(t.length===0)return Gt(e,n,r);let s=t[0],i=F.resolve(s);A.existsSync(i)||(process.stderr.write(`File not found: ${i} `),process.exit(1));let o=fr(s),c=await nt(()=>hr(s,o,n,r),{maxAttempts:3,backoff:tt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await vo(n,r,dl)}async function hr(t,e,n,r){let s=hl(e.workUnit),i=F.join(__dirname,"..","chunking",e.phase+".json");if(!A.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(A.readFileSync(i,"utf8")),c=F.resolve(t),a=A.readFileSync(c,"utf8"),l=wo.chunk(a,o);if(l.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=X(),d=Z(),f=K(),h=re();A.existsSync(u)||A.mkdirSync(u,{recursive:!0});let m,S,g=A.existsSync(d),x=A.existsSync(f);g&&(m=await T.loadStore(d)),x&&(S=T.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=bo(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||dr;m=await T.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),k=o.confidence||"medium",D=l.map((_,M)=>{let Q=String(M+1).padStart(3,"0"),G={id:`${e.workUnit}-${e.phase}-${e.topic}-${Q}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:k,source_file:t,timestamp:I};return w&&(G.embedding=w[M]),G});return await T.withLock(h,async()=>{if(g?m=await T.loadStore(d):A.existsSync(d)&&(m=await T.loadStore(d)),p==="full"&&A.existsSync(f)){let M=T.readMetadata(f),Q=y.dimensions();if(M.provider&&M.dimensions!==Q)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${Q}, store now has dims=${M.dimensions}. Retrying.`)}await T.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await T.insertDocument(m,M);await T.saveStore(m,d);let _=A.existsSync(f)?T.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),T.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};T.writeMetadata(f,M)}}),D.length}function Qe(t){let{execFileSync:e}=require("child_process");return e("node",[ul,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function et(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} -`)}async function Eo(t,e,n,r){return(await T.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function pr(){let t=[],e;try{let n=Qe(["list"]);e=JSON.parse(n)}catch(n){return et("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of ur){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Qe(["resolve",`${r}.${s}.${o}`]).trim();l&&A.existsSync(F.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){et(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Gt(t,e,n){let r=pr(),s=X(),i=Z();A.existsSync(s)||A.mkdirSync(s,{recursive:!0});let o=null;A.existsSync(i)&&(o=await T.loadStore(i));let c=0,a=0,l=0;for(let u of r){if(o&&await Eo(o,u.workUnit,u.phase,u.topic)){l++;continue}try{let d={workUnit:u.workUnit,phase:u.phase,topic:u.topic},f=await nt(()=>hr(u.file,d,e,n),{maxAttempts:3,backoff:tt});process.stdout.write(`Indexing ${u.file}... ${f} chunks -`),c++,a+=f,A.existsSync(i)&&(o=await T.loadStore(i))}catch(d){await Ao(u.file,d.message),process.stderr.write(`Failed to index ${u.file} after 3 attempts: ${d.message}. Added to pending queue. +`),await Ao(n,r,dl)}async function hr(t,e,n,r){let s=hl(e.workUnit),i=F.join(__dirname,"..","chunking",e.phase+".json");if(!A.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(A.readFileSync(i,"utf8")),c=F.resolve(t),a=A.readFileSync(c,"utf8"),l=yo.chunk(a,o);if(l.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=X(),d=Z(),f=K(),h=re();A.existsSync(u)||A.mkdirSync(u,{recursive:!0});let m,S,g=A.existsSync(d),x=A.existsSync(f);g&&(m=await T.loadStore(d)),x&&(S=T.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=Io(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||dr;m=await T.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),k=o.confidence||"medium",D=l.map((_,M)=>{let Q=String(M+1).padStart(3,"0"),G={id:`${e.workUnit}-${e.phase}-${e.topic}-${Q}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:k,source_file:t,timestamp:I};return w&&(G.embedding=w[M]),G});return await T.withLock(h,async()=>{if(g?m=await T.loadStore(d):A.existsSync(d)&&(m=await T.loadStore(d)),p==="full"&&A.existsSync(f)){let M=T.readMetadata(f),Q=y.dimensions();if(M.provider&&M.dimensions!==Q)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${Q}, store now has dims=${M.dimensions}. Retrying.`)}await T.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await T.insertDocument(m,M);await T.saveStore(m,d);let _=A.existsSync(f)?T.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),T.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};T.writeMetadata(f,M)}}),D.length}function Qe(t){let{execFileSync:e}=require("child_process");return e("node",[ul,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function et(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} +`)}async function bo(t,e,n,r){return(await T.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function pr(){let t=[],e;try{let n=Qe(["list"]);e=JSON.parse(n)}catch(n){return et("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of ur){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Qe(["resolve",`${r}.${s}.${o}`]).trim();l&&A.existsSync(F.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){et(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Gt(t,e,n){let r=pr(),s=X(),i=Z();A.existsSync(s)||A.mkdirSync(s,{recursive:!0});let o=null;A.existsSync(i)&&(o=await T.loadStore(i));let c=0,a=0,l=0;for(let u of r){if(o&&await bo(o,u.workUnit,u.phase,u.topic)){l++;continue}try{let d={workUnit:u.workUnit,phase:u.phase,topic:u.topic},f=await nt(()=>hr(u.file,d,e,n),{maxAttempts:3,backoff:tt});process.stdout.write(`Indexing ${u.file}... ${f} chunks +`),c++,a+=f,A.existsSync(i)&&(o=await T.loadStore(i))}catch(d){await Eo(u.file,d.message),process.stderr.write(`Failed to index ${u.file} after 3 attempts: ${d.message}. Added to pending queue. `),d.stack&&process.stderr.write(d.stack+` -`)}}await vo(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${l} already indexed. -`)}async function Ao(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await T.withLock(s,async()=>{let i;A.existsSync(n)?i=T.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});T.writeMetadata(n,i)})}async function Kt(t){let e=K(),n=re();A.existsSync(e)&&await T.withLock(n,async()=>{if(!A.existsSync(e))return;let r=T.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),T.writeMetadata(e,r))})}async function vo(t,e,n){let r=K();if(!A.existsSync(r))return;let s=T.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=ar){process.stderr.write(`Pending item ${o.file} exceeded ${ar} attempts \u2014 evicting. Last error: ${o.error} +`)}}await Ao(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${l} already indexed. +`)}async function Eo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await T.withLock(s,async()=>{let i;A.existsSync(n)?i=T.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});T.writeMetadata(n,i)})}async function Kt(t){let e=K(),n=re();A.existsSync(e)&&await T.withLock(n,async()=>{if(!A.existsSync(e))return;let r=T.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),T.writeMetadata(e,r))})}async function Ao(t,e,n){let r=K();if(!A.existsSync(r))return;let s=T.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=ar){process.stderr.write(`Pending item ${o.file} exceeded ${ar} attempts \u2014 evicting. Last error: ${o.error} `),await Kt(o.file);continue}let c=F.resolve(o.file);if(!A.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. -`),await Kt(o.file);continue}let a;try{a=fr(o.file)}catch{await Kt(o.file);continue}try{await nt(()=>hr(o.file,a,t,e),{maxAttempts:3,backoff:tt}),await Kt(o.file)}catch(l){await Ao(o.file,l.message)}}}var lr=10;function pe(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function To(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await T.withLock(s,async()=>{let i;A.existsSync(n)?i=T.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=pe(t),c=i.pending_removals.findIndex(l=>pe(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});T.writeMetadata(n,i)})}async function go(t){let e=K(),n=re();A.existsSync(e)&&await T.withLock(n,async()=>{if(!A.existsSync(e))return;let r=T.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=pe(t);r.pending_removals=r.pending_removals.filter(i=>pe(i)!==s),T.writeMetadata(e,r)})}async function ko(){let t=K();if(!A.existsSync(t))return;let e=T.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=lr){process.stderr.write(`Pending removal for ${pe(r)} exceeded ${lr} attempts \u2014 evicting. -`),await go(r);continue}try{await _o({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${pe(r)}. -`),await go(r)}catch(s){try{await To({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function _o(t){let e=Z(),n=re();if(!A.existsSync(e))return 0;let r=0;return await T.withLock(n,async()=>{let s=await T.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await T.removeByFilter(s,i),await T.saveStore(s,e)}),r}var ml={high:4,medium:3,"low-medium":2,low:1};function gl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function yl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var cr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},wl=.1;function xl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=wl);let c=ml[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Sl(t){let e=[];for(let n of t)(!n.field||!cr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(cr).join(", ")} +`),await Kt(o.file);continue}let a;try{a=fr(o.file)}catch{await Kt(o.file);continue}try{await nt(()=>hr(o.file,a,t,e),{maxAttempts:3,backoff:tt}),await Kt(o.file)}catch(l){await Eo(o.file,l.message)}}}var lr=10;function pe(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function vo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await T.withLock(s,async()=>{let i;A.existsSync(n)?i=T.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=pe(t),c=i.pending_removals.findIndex(l=>pe(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});T.writeMetadata(n,i)})}async function go(t){let e=K(),n=re();A.existsSync(e)&&await T.withLock(n,async()=>{if(!A.existsSync(e))return;let r=T.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=pe(t);r.pending_removals=r.pending_removals.filter(i=>pe(i)!==s),T.writeMetadata(e,r)})}async function To(){let t=K();if(!A.existsSync(t))return;let e=T.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=lr){process.stderr.write(`Pending removal for ${pe(r)} exceeded ${lr} attempts \u2014 evicting. +`),await go(r);continue}try{await ko({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${pe(r)}. +`),await go(r)}catch(s){try{await vo({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function ko(t){let e=Z(),n=re();if(!A.existsSync(e))return 0;let r=0;return await T.withLock(n,async()=>{let s=await T.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await T.removeByFilter(s,i),await T.saveStore(s,e)}),r}var ml={high:4,medium:3,"low-medium":2,low:1};function gl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function yl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var cr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},wl=.1;function xl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=wl);let c=ml[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Sl(t){let e=[];for(let n of t)(!n.field||!cr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(cr).join(", ")} `),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value `),process.exit(1)),e.push({field:cr[n.field],value:n.value});return e}function Il(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} @@ -184,7 +184,7 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `);return}process.stdout.write(`ready `)}async function Al(){let t=X(),e=Z(),n=K(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!A.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await T.loadStore(e),i=await T.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let u=(A.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),A.existsSync(n)){let p=T.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${ar}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${pe(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${lr})`)}let y;try{y=_e.loadConfig()}catch{y=null}if(y){let w=_e.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),A.existsSync(F.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=pr(),y=[];for(let w of p)await Eo(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} +`);return}let s=await T.loadStore(e),i=await T.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let u=(A.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),A.existsSync(n)){let p=T.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${ar}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${pe(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${lr})`)}let y;try{y=_e.loadConfig()}catch{y=null}if(y){let w=_e.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),A.existsSync(F.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=pr(),y=[];for(let w of p)await bo(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} `)}let h=[],m=null;try{m=JSON.parse(Qe(["list"]))}catch(p){et("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let k=I.phases.specification.items[w];k&&k.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` `)}async function vl(t,e,n,r){let s=Z(),i=K(),o=re();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. @@ -198,20 +198,22 @@ Type 'rebuild' to confirm: `),await Tl()!=="rebuild"&&(process.stderr.write(`Abo ${l} ${u} Rename them back manually to recover. Rollback error: ${f.message} -`)}throw d}A.existsSync(l)&&A.unlinkSync(l),A.existsSync(u)&&A.unlinkSync(u)}function Tl(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function kl(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] +`)}throw d}A.existsSync(l)&&A.unlinkSync(l),A.existsSync(u)&&A.unlinkSync(u)}function Tl(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function kl(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1)),await ko();let n=Z();if(!A.existsSync(n)){let s=yo(e);process.stdout.write(`Removed 0 chunks for ${s} -`);return}let r=yo(e);try{let s=await _o(e);process.stdout.write(`Removed ${s} chunks for ${r} -`)}catch(s){await To(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). 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diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 0ef70adb8..01844f83e 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1652,7 +1652,7 @@ function readStdinLine() { async function cmdRemove(_args, options) { if (!options.workUnit) { - process.stderr.write('Usage: knowledge remove --work-unit [--phase

] [--topic ]\n'); + process.stderr.write('Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run]\n'); process.exit(1); } @@ -1661,19 +1661,36 @@ async function cmdRemove(_args, options) { process.exit(1); } + const sp = storePath(); + const desc = formatRemoveDesc(options); + + // --dry-run is observational only: count what would be removed, touch + // nothing on disk. Don't drain the pending-removal queue either — that + // would be a real side effect. + if (options.dryRun) { + if (!fs.existsSync(sp)) { + process.stdout.write(`Would remove 0 chunks for ${desc} (store not initialised)\n`); + return; + } + const db = await store.loadStore(sp); + const where = { work_unit: { eq: options.workUnit } }; + if (options.phase) where.phase = { eq: options.phase }; + if (options.topic) where.topic = { eq: options.topic }; + const count = await store.countByFilter(db, where); + process.stdout.write(`Would remove ${count} chunks for ${desc}\n`); + return; + } + // Drain any previously-failed removals first so stale chunks from earlier // cancellations/supersessions don't linger just because the store was // briefly locked. await processPendingRemovals(); - const sp = storePath(); if (!fs.existsSync(sp)) { - const desc = formatRemoveDesc(options); process.stdout.write(`Removed 0 chunks for ${desc}\n`); return; } - const desc = formatRemoveDesc(options); try { const removed = await performRemoval(options); process.stdout.write(`Removed ${removed} chunks for ${desc}\n`); diff --git a/src/knowledge/store.js b/src/knowledge/store.js index 5988ae23f..ae1a94e41 100644 --- a/src/knowledge/store.js +++ b/src/knowledge/store.js @@ -172,6 +172,23 @@ async function removeByFilter(db, where) { return removed; } +/** + * Count chunks matching `where` without deleting. Used by `remove --dry-run`. + * Same query shape as removeByFilter so the count is guaranteed to match + * what a non-dry-run invocation would actually remove. + */ +async function countByFilter(db, where) { + if (!where || Object.keys(where).length === 0) { + throw new Error('countByFilter: where clause is required'); + } + const res = await orama.search(db, { + term: '', + where, + limit: 100000, + }); + return res.hits.length; +} + function normaliseHit(hit) { const d = hit.document || {}; return { @@ -483,6 +500,7 @@ module.exports = { insertDocument, removeByIdentity, removeByFilter, + countByFilter, searchFulltext, searchVector, searchHybrid, diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 4bc86c190..2130b5b60 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -784,6 +784,28 @@ assert_eq "data-model chunks unaffected" "true" "$(echo "$query_output" | grep - assert_eq "auth-flow chunks gone" "false" "$(echo "$query_output" | grep -q 'auth-flow/auth-flow' && echo true || echo false)" teardown_project +# --- Test 38b: remove --dry-run previews without deleting --- +echo "Test 38b: remove --dry-run is observational" +setup_project +create_work_unit "preview-wu" "feature" "Preview" +write_stub_config +create_discussion_file "preview-wu" "preview-wu" +run_kb index .workflows/preview-wu/discussion/preview-wu.md >/dev/null 2>&1 +# grep -c exits 1 on zero matches; absorb under set -eo pipefail. +before=$(run_kb query "" --limit 100 2>&1 | grep -c '^\[discussion' || true) +dry_output=$(run_kb remove --work-unit preview-wu --dry-run 2>&1) +assert_eq "dry-run says 'Would remove'" "true" \ + "$(echo "$dry_output" | grep -q 'Would remove' && echo true || echo false)" +assert_eq "dry-run does NOT say 'Removed'" "false" \ + "$(echo "$dry_output" | grep -qE '^Removed' && echo true || echo false)" +after=$(run_kb query "" --limit 100 2>&1 | grep -c '^\[discussion' || true) +assert_eq "chunk count unchanged after dry-run" "$before" "$after" +# Sanity: a real remove afterwards DOES delete. +run_kb remove --work-unit preview-wu >/dev/null 2>&1 +after_real=$(run_kb query "" --limit 100 2>&1 | grep -c '^\[discussion' || true) +assert_eq "real remove actually deletes" "0" "$after_real" +teardown_project + # --- Test 39: Remove chunks for a work unit + phase --- echo "Test 39: Remove chunks for work unit + phase" setup_project From fd8523e44935895bfe271aea79b89b841b71c952 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 21:40:10 +0100 Subject: [PATCH 31/78] fix(knowledge): validate OpenAI embedBatch response length MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit embedBatch assumed res.data.length === requested length. If OpenAI returned fewer rows (rare but not impossible — partial availability, certain rate-limit interactions), results[offset + i] for missing indices stayed undefined. Downstream: doc.embedding = undefined, Orama inserted the chunk with no embedding field, chunk silently degraded to keyword-only with no warning. embed() had this guard already (deferred-issue #13); embedBatch was missed. Added length check after each _fetch in both branches of embedBatch: - Single-batch (texts.length <= MAX_BATCH_SIZE): validate res.data.length === texts.length. - Chunked (>MAX_BATCH_SIZE): validate per slice. Error message includes requested vs received counts and chunk offset when applicable. Tests: two new cases in test-knowledge-openai.cjs — short response (2 rows for 3 inputs) and missing data array both assert rejection with /response length mismatch/ pattern. Confirmed both fail on pre-fix code by reverting the guards. --- .../workflow-knowledge/scripts/knowledge.cjs | 76 +++++++++---------- src/knowledge/providers/openai.js | 14 ++++ tests/scripts/test-knowledge-openai.cjs | 25 ++++++ 3 files changed, 77 insertions(+), 38 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index c69fd36ca..ffc77e091 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var Jt=Object.defineProperty;var Do=Object.getOwnPropertyDescriptor;var Mo=Object.getOwnPropertyNames;var No=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var ge=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),ee=(t,e)=>{for(var n in e)Jt(t,n,{get:e[n],enumerable:!0})},Uo=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of 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r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions});return[...(await this._fetch(r)).data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var L=require("fs"),Ze=require("path"),Vi=require("os"),{StubProvider:Za}=er(),{OpenAIProvider:Qa}=Vt(),Wi={similarity_threshold:.8,decay_months:6},nr=["stub","openai"],ji={openai:"OPENAI_API_KEY"};function qi(){return Ze.join(Vi.homedir(),".config","workflows","config.json")}function Ki(t){return Ze.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Gi(){return Ze.join(Vi.homedir(),".config","workflows","credentials.json")}function rr(t){if(!L.existsSync(t))return null;let e;try{e=L.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function sr(t){if(!L.existsSync(t))return null;let e;try{e=L.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function el(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(L.existsSync(t))try{r=sr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=Ze.dirname(t);L.existsSync(o)||L.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=L.openSync(c,"w",384);try{L.writeSync(a,JSON.stringify(i,null,2)+` +`).trim()===""}Ri.exports={chunk:qa}});var er=ge((wh,$i)=>{"use strict";var Ci="stub";function Ja(t){let e=2166136261;for(let n=0;n>>0}function Xa(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var Qn=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=Ja(n)||1,s=Xa(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Bi="text-embedding-3-small",Fi="https://api.openai.com/v1/embeddings",tr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Bi,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions}),s=await this._fetch(r);if(!Array.isArray(s.data)||s.data.length!==e.length)throw new Error(`OpenAI embedBatch response length mismatch: requested ${e.length}, received ${s.data?s.data.length:0}`);return[...s.data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var L=require("fs"),Ze=require("path"),Vi=require("os"),{StubProvider:Za}=er(),{OpenAIProvider:Qa}=Vt(),Wi={similarity_threshold:.8,decay_months:6},nr=["stub","openai"],ji={openai:"OPENAI_API_KEY"};function qi(){return Ze.join(Vi.homedir(),".config","workflows","config.json")}function Ki(t){return Ze.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Gi(){return Ze.join(Vi.homedir(),".config","workflows","credentials.json")}function rr(t){if(!L.existsSync(t))return null;let e;try{e=L.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function sr(t){if(!L.existsSync(t))return null;let e;try{e=L.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function el(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(L.existsSync(t))try{r=sr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=Ze.dirname(t);L.existsSync(o)||L.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=L.openSync(c,"w",384);try{L.writeSync(a,JSON.stringify(i,null,2)+` `)}finally{L.closeSync(a)}L.chmodSync(c,384),L.renameSync(c,t);try{L.chmodSync(t,384)}catch{}}function Yi(t,e){if(!t)return null;let n=ji[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Gi(),s;try{s=sr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function tl(t){let e=t&&t.systemPath||qi(),n=t&&t.projectPath||Ki(),r=rr(e),s=rr(n),i=Object.assign({},Wi);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=Yi(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function nl(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Za(n!=null?{dimensions:n}:void 0)}if(!nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${nr.join(", ")}`);return t._api_key&&e==="openai"?new Qa({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function rl(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=Ze.dirname(t);L.existsSync(n)||L.mkdirSync(n,{recursive:!0});let r=t+".tmp";L.writeFileSync(r,JSON.stringify(e,null,2)+` `,"utf8"),L.renameSync(r,t)}Hi.exports={DEFAULTS:Wi,AVAILABLE_PROVIDERS:nr,PROVIDER_ENV_VARS:ji,systemConfigPath:qi,projectConfigPath:Ki,credentialsPath:Gi,readConfigFile:rr,loadConfig:tl,loadCredentials:sr,writeCredentials:el,resolveApiKey:Yi,resolveProvider:nl,writeConfigFile:rl}});var ho=ge((Ih,fo)=>{"use strict";var ae=require("fs"),le=require("path"),sl=require("readline"),$=ir(),or=Zn(),{OpenAIProvider:il}=Vt(),Ji="text-embedding-3-small",Xi=1536,Zi=1536;function Qi(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function eo(){let t=sl.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function Wt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function ke(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function to(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` +`),t.close(),process.exit(130)}),t}function Wt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Te(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function to(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` `||u==="\r")return c(),s.write(` `),n(o.trim());if(u===""){c(),s.write(` `),process.exit(130);return}if(u==="")return c(),s.write(` @@ -39,10 +39,10 @@ System config already exists at ${e} `),l.model&&process.stdout.write(` model: ${l.model} `),l.dimensions&&process.stdout.write(` dimensions: ${l.dimensions} `),process.stdout.write(` -`),!await ke(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. +`),!await Te(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. `),{provider:l.provider||null,previouslyStub:!l.provider}}else n.exists&&!n.valid?(process.stdout.write(` System config at ${e} is not valid: ${n.reason} -`),await ke(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. +`),await Te(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. `),process.exit(1))):process.stdout.write(` No system config found at ${e}. Creating a new one. `);let r=n.exists&&n.valid&&!n.knowledge.provider;process.stdout.write(` @@ -67,7 +67,7 @@ Found an existing API key in ${s} \u2014 validating via a test embed... `);try{await jt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. `);return}catch(c){let{message:a,hint:l}=qt(c);if(process.stdout.write(`${a} ${l} -`),!await ke(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. +`),!await Te(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. `);return}}}await ol(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function ol(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key @@ -92,12 +92,12 @@ Validating via a test embed... `);try{await jt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=qt(o);if(process.stdout.write(`${c} ${a} -`),!await ke(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. +`),!await Te(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). `);return}}async function lo(t){let e=le.resolve(process.cwd(),".workflows",".knowledge"),n=le.join(e,"config.json"),r=le.join(e,"store.msp"),s=le.join(e,"metadata.json"),i=oo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} -`),!await ke(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. +`),!await Te(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. @@ -120,7 +120,7 @@ Knowledge base setup Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}fo.exports={cmdSetup:cl,requireTTY:Qi,createPrompter:eo,ask:Wt,askYesNo:ke,askSecret:to,buildSystemConfigOpenAI:no,buildSystemConfigStub:ro,buildProjectConfigEmpty:so,detectSystemConfig:io,detectProjectInit:oo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:ao,runSystemConfigStep:co,runProjectInitStep:lo,runInitialIndexStep:uo,KEYWORD_ONLY_DIMENSIONS:Zi,OPENAI_DEFAULT_MODEL:Ji,OPENAI_DEFAULT_DIMENSIONS:Xi}});var A=require("fs"),F=require("path"),T=Zn(),yo=Li(),{StubProvider:al}=er(),{OpenAIProvider:ll}=Vt(),_e=ir(),wo=ho(),ur=["research","discussion","investigation","specification"],ul=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(A.existsSync(t))return t;if(A.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}fo.exports={cmdSetup:cl,requireTTY:Qi,createPrompter:eo,ask:Wt,askYesNo:Te,askSecret:to,buildSystemConfigOpenAI:no,buildSystemConfigStub:ro,buildProjectConfigEmpty:so,detectSystemConfig:io,detectProjectInit:oo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:ao,runSystemConfigStep:co,runProjectInitStep:lo,runInitialIndexStep:uo,KEYWORD_ONLY_DIMENSIONS:Zi,OPENAI_DEFAULT_MODEL:Ji,OPENAI_DEFAULT_DIMENSIONS:Xi}});var A=require("fs"),F=require("path"),k=Zn(),yo=Li(),{StubProvider:al}=er(),{OpenAIProvider:ll}=Vt(),_e=ir(),wo=ho(),ur=["research","discussion","investigation","specification"],ul=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(A.existsSync(t))return t;if(A.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),tt=[1e3,2e3,4e3],dl=5,ar=10,dr=1536,po=!1;function xo(t){let e=[],n={},r=[],s=0;for(;s [options] @@ -158,16 +158,16 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`)}async function pl(t,e,n,r){if(t.length===0)return Gt(e,n,r);let s=t[0],i=F.resolve(s);A.existsSync(i)||(process.stderr.write(`File not found: ${i} `),process.exit(1));let o=fr(s),c=await nt(()=>hr(s,o,n,r),{maxAttempts:3,backoff:tt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await Ao(n,r,dl)}async function hr(t,e,n,r){let s=hl(e.workUnit),i=F.join(__dirname,"..","chunking",e.phase+".json");if(!A.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(A.readFileSync(i,"utf8")),c=F.resolve(t),a=A.readFileSync(c,"utf8"),l=yo.chunk(a,o);if(l.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=X(),d=Z(),f=K(),h=re();A.existsSync(u)||A.mkdirSync(u,{recursive:!0});let m,S,g=A.existsSync(d),x=A.existsSync(f);g&&(m=await T.loadStore(d)),x&&(S=T.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=Io(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||dr;m=await T.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),k=o.confidence||"medium",D=l.map((_,M)=>{let Q=String(M+1).padStart(3,"0"),G={id:`${e.workUnit}-${e.phase}-${e.topic}-${Q}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:k,source_file:t,timestamp:I};return w&&(G.embedding=w[M]),G});return await T.withLock(h,async()=>{if(g?m=await T.loadStore(d):A.existsSync(d)&&(m=await T.loadStore(d)),p==="full"&&A.existsSync(f)){let M=T.readMetadata(f),Q=y.dimensions();if(M.provider&&M.dimensions!==Q)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${Q}, store now has dims=${M.dimensions}. 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Added to pending queue. +`),await Ao(n,r,dl)}async function hr(t,e,n,r){let s=hl(e.workUnit),i=F.join(__dirname,"..","chunking",e.phase+".json");if(!A.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(A.readFileSync(i,"utf8")),c=F.resolve(t),a=A.readFileSync(c,"utf8"),l=yo.chunk(a,o);if(l.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=X(),d=Z(),f=K(),h=re();A.existsSync(u)||A.mkdirSync(u,{recursive:!0});let m,S,g=A.existsSync(d),x=A.existsSync(f);g&&(m=await k.loadStore(d)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=Io(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||dr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let Q=String(M+1).padStart(3,"0"),G={id:`${e.workUnit}-${e.phase}-${e.topic}-${Q}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(G.embedding=w[M]),G});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(d):A.existsSync(d)&&(m=await k.loadStore(d)),p==="full"&&A.existsSync(f)){let M=k.readMetadata(f),Q=y.dimensions();if(M.provider&&M.dimensions!==Q)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${Q}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,d);let _=A.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function Qe(t){let{execFileSync:e}=require("child_process");return e("node",[ul,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function et(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} +`)}async function bo(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function pr(){let t=[],e;try{let n=Qe(["list"]);e=JSON.parse(n)}catch(n){return et("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of ur){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Qe(["resolve",`${r}.${s}.${o}`]).trim();l&&A.existsSync(F.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){et(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Gt(t,e,n){let r=pr(),s=X(),i=Z();A.existsSync(s)||A.mkdirSync(s,{recursive:!0});let o=null;A.existsSync(i)&&(o=await k.loadStore(i));let c=0,a=0,l=0;for(let u of r){if(o&&await bo(o,u.workUnit,u.phase,u.topic)){l++;continue}try{let d={workUnit:u.workUnit,phase:u.phase,topic:u.topic},f=await nt(()=>hr(u.file,d,e,n),{maxAttempts:3,backoff:tt});process.stdout.write(`Indexing ${u.file}... ${f} chunks +`),c++,a+=f,A.existsSync(i)&&(o=await k.loadStore(i))}catch(d){await Eo(u.file,d.message),process.stderr.write(`Failed to index ${u.file} after 3 attempts: ${d.message}. Added to pending queue. `),d.stack&&process.stderr.write(d.stack+` `)}}await Ao(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${l} already indexed. -`)}async function Eo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await T.withLock(s,async()=>{let i;A.existsSync(n)?i=T.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});T.writeMetadata(n,i)})}async function Kt(t){let e=K(),n=re();A.existsSync(e)&&await T.withLock(n,async()=>{if(!A.existsSync(e))return;let r=T.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),T.writeMetadata(e,r))})}async function Ao(t,e,n){let r=K();if(!A.existsSync(r))return;let s=T.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=ar){process.stderr.write(`Pending item ${o.file} exceeded ${ar} attempts \u2014 evicting. Last error: ${o.error} +`)}async function Eo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;A.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Kt(t){let e=K(),n=re();A.existsSync(e)&&await k.withLock(n,async()=>{if(!A.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function Ao(t,e,n){let r=K();if(!A.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=ar){process.stderr.write(`Pending item ${o.file} exceeded ${ar} attempts \u2014 evicting. Last error: ${o.error} `),await Kt(o.file);continue}let c=F.resolve(o.file);if(!A.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. -`),await Kt(o.file);continue}let a;try{a=fr(o.file)}catch{await Kt(o.file);continue}try{await nt(()=>hr(o.file,a,t,e),{maxAttempts:3,backoff:tt}),await Kt(o.file)}catch(l){await Eo(o.file,l.message)}}}var lr=10;function pe(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function vo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await T.withLock(s,async()=>{let i;A.existsSync(n)?i=T.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=pe(t),c=i.pending_removals.findIndex(l=>pe(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});T.writeMetadata(n,i)})}async function go(t){let e=K(),n=re();A.existsSync(e)&&await T.withLock(n,async()=>{if(!A.existsSync(e))return;let r=T.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=pe(t);r.pending_removals=r.pending_removals.filter(i=>pe(i)!==s),T.writeMetadata(e,r)})}async function To(){let t=K();if(!A.existsSync(t))return;let e=T.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=lr){process.stderr.write(`Pending removal for ${pe(r)} exceeded ${lr} attempts \u2014 evicting. -`),await go(r);continue}try{await ko({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${pe(r)}. -`),await go(r)}catch(s){try{await vo({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function ko(t){let e=Z(),n=re();if(!A.existsSync(e))return 0;let r=0;return await T.withLock(n,async()=>{let s=await T.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await T.removeByFilter(s,i),await T.saveStore(s,e)}),r}var ml={high:4,medium:3,"low-medium":2,low:1};function gl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function yl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var cr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},wl=.1;function xl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=wl);let c=ml[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Sl(t){let e=[];for(let n of t)(!n.field||!cr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(cr).join(", ")} +`),await Kt(o.file);continue}let a;try{a=fr(o.file)}catch{await Kt(o.file);continue}try{await nt(()=>hr(o.file,a,t,e),{maxAttempts:3,backoff:tt}),await Kt(o.file)}catch(l){await Eo(o.file,l.message)}}}var lr=10;function pe(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function vo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;A.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=pe(t),c=i.pending_removals.findIndex(l=>pe(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function go(t){let e=K(),n=re();A.existsSync(e)&&await k.withLock(n,async()=>{if(!A.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=pe(t);r.pending_removals=r.pending_removals.filter(i=>pe(i)!==s),k.writeMetadata(e,r)})}async function ko(){let t=K();if(!A.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=lr){process.stderr.write(`Pending removal for ${pe(r)} exceeded ${lr} attempts \u2014 evicting. +`),await go(r);continue}try{await To({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${pe(r)}. +`),await go(r)}catch(s){try{await vo({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function To(t){let e=Z(),n=re();if(!A.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var ml={high:4,medium:3,"low-medium":2,low:1};function gl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function yl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var cr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},wl=.1;function xl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=wl);let c=ml[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Sl(t){let e=[];for(let n of t)(!n.field||!cr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(cr).join(", ")} `),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value `),process.exit(1)),e.push({field:cr[n.field],value:n.value});return e}function Il(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} @@ -175,45 +175,45 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== Store: provider=${r}, model=${s}, dimensions=${i} Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function bl(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--work-unit ...] [--work-type ...] [--phase ...] [--topic ...] [--boost: ]... [--limit N] `),process.exit(1));let s=t,i=e.limit||10,o=Z(),c=K();if(!A.existsSync(o)){process.stdout.write(`[0 results] -`);return}let a=await T.loadStore(o),l="keyword-only",u=null,d=null;A.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. 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f)S.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(S.join(` `)+` `)}async function _o(){let t=process.argv.slice(2),{positional:e,flags:n,boosts:r}=xo(t),s=e[0],i=e.slice(1),o=So(n,r);s||(process.stderr.write(mo+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=_e.loadConfig(),a=_e.resolveProvider(c)),s){case"index":await pl(i,o,c,a);break;case"query":await bl(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await Al();break;case"remove":await kl(i,o,c,a);break;case"compact":await Ml(i,o,c,a);break;case"rebuild":await vl(i,o,c,a);break;case"setup":await wo.cmdSetup(Gt,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=_e.loadConfig(),a=_e.resolveProvider(c)),s){case"index":await pl(i,o,c,a);break;case"query":await bl(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await Al();break;case"remove":await Tl(i,o,c,a);break;case"compact":await Ml(i,o,c,a);break;case"rebuild":await vl(i,o,c,a);break;case"setup":await wo.cmdSetup(Gt,i,o);break;default:process.stderr.write(`Unknown command "${s}". ${mo} -`),process.exit(1)}}module.exports={parseArgs:xo,buildOptions:So,deriveIdentity:fr,resolveProviderState:Io,withRetry:nt,main:_o,cmdIndexBulk:Gt,StubProvider:al,OpenAIProvider:ll,store:T,chunker:yo,config:_e,setup:wo,knowledgeDir:X,storePath:Z,metadataPath:K,lockFilePath:re,INDEXED_PHASES:ur,KEYWORD_ONLY_DIMENSIONS:dr};require.main===module&&_o().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` +`),process.exit(1)}}module.exports={parseArgs:xo,buildOptions:So,deriveIdentity:fr,resolveProviderState:Io,withRetry:nt,main:_o,cmdIndexBulk:Gt,StubProvider:al,OpenAIProvider:ll,store:k,chunker:yo,config:_e,setup:wo,knowledgeDir:X,storePath:Z,metadataPath:K,lockFilePath:re,INDEXED_PHASES:ur,KEYWORD_ONLY_DIMENSIONS:dr};require.main===module&&_o().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/providers/openai.js b/src/knowledge/providers/openai.js index 463007a8c..41f83be65 100644 --- a/src/knowledge/providers/openai.js +++ b/src/knowledge/providers/openai.js @@ -63,6 +63,15 @@ class OpenAIProvider { if (texts.length <= MAX_BATCH_SIZE) { const body = JSON.stringify({ model: this._model, input: texts, dimensions: this._dimensions }); const res = await this._fetch(body); + // Validate response length — a short response silently propagates + // undefined embeddings into Orama and degrades chunks to keyword-only + // with no warning. Rare (OpenAI usually 400s on empty input) but + // cheap to guard. + if (!Array.isArray(res.data) || res.data.length !== texts.length) { + throw new Error( + `OpenAI embedBatch response length mismatch: requested ${texts.length}, received ${res.data ? res.data.length : 0}` + ); + } // OpenAI returns data sorted by index — ensure correct order. const sorted = [...res.data].sort((a, b) => a.index - b.index); return sorted.map((d) => d.embedding); @@ -74,6 +83,11 @@ class OpenAIProvider { const slice = texts.slice(offset, offset + MAX_BATCH_SIZE); const body = JSON.stringify({ model: this._model, input: slice, dimensions: this._dimensions }); const res = await this._fetch(body); + if (!Array.isArray(res.data) || res.data.length !== slice.length) { + throw new Error( + `OpenAI embedBatch response length mismatch on chunk offset=${offset}: requested ${slice.length}, received ${res.data ? res.data.length : 0}` + ); + } const sorted = [...res.data].sort((a, b) => a.index - b.index); for (let i = 0; i < sorted.length; i++) { results[offset + i] = sorted[i].embedding; diff --git a/tests/scripts/test-knowledge-openai.cjs b/tests/scripts/test-knowledge-openai.cjs index d9e701df8..1673d0540 100644 --- a/tests/scripts/test-knowledge-openai.cjs +++ b/tests/scripts/test-knowledge-openai.cjs @@ -193,6 +193,31 @@ describe('OpenAIProvider embedBatch (mocked)', () => { const result = await p.embedBatch(['single']); assert.deepStrictEqual(result, [vec]); }); + + it('throws on short response (fewer rows than requested)', async () => { + // API returned 2 rows for a 3-item request. Previously: results[2] + // stayed undefined and propagated silently into the store. + globalThis.fetch = mockFetchSuccess({ + data: [ + { index: 0, embedding: [0.1, 0.2] }, + { index: 1, embedding: [0.3, 0.4] }, + ], + }); + const p = new OpenAIProvider({ apiKey: 'sk-test', dimensions: 2 }); + await assert.rejects( + () => p.embedBatch(['a', 'b', 'c']), + /response length mismatch.*requested 3, received 2/ + ); + }); + + it('throws on missing data array', async () => { + globalThis.fetch = mockFetchSuccess({ data: null }); + const p = new OpenAIProvider({ apiKey: 'sk-test', dimensions: 2 }); + await assert.rejects( + () => p.embedBatch(['a']), + /response length mismatch/ + ); + }); }); // --------------------------------------------------------------------------- From fc041a4e73cb7b48d5943a28af980da14a24b377 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 22:04:52 +0100 Subject: [PATCH 32/78] fix(knowledge): check validates config.json parses, not just that it exists MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit cmdCheck only verified config.json's existence — a corrupted file passed the check and the user only saw a cryptic JSON parse error later on index or query. Worse, skills parse check output to gate their flow; 'ready' on corrupt config meant the skill then invoked a downstream command that crashed. Added Condition 2b between the existence check and the store check: attempt config.readConfigFile() (the authoritative load path — it already throws with descriptive errors for JSON parse failures, missing top-level 'knowledge' key, wrong type). On throw: write the specific diagnostic to stderr, output 'not-ready' on stdout, return. Tests: three new cases. - Test 37b: invalid JSON → not-ready + 'config error' on stderr. - Test 37c: missing 'knowledge' key → not-ready + diagnostic mentions the key. - Test 37d: corrupted config over an otherwise-healthy KB flips check from 'ready' to 'not-ready' — the strongest guard since it isolates the config path from 'fails for other reasons'. Confirmed all three fail on pre-fix code. 153/153 CLI pass. Smoke + integration green. --- .../workflow-knowledge/scripts/knowledge.cjs | 38 ++++++++------- src/knowledge/index.js | 12 +++++ tests/scripts/test-knowledge-cli.sh | 48 +++++++++++++++++++ 3 files changed, 80 insertions(+), 18 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index ffc77e091..2448dec9f 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var Jt=Object.defineProperty;var Do=Object.getOwnPropertyDescriptor;var Mo=Object.getOwnPropertyNames;var No=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var ge=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),ee=(t,e)=>{for(var n in e)Jt(t,n,{get:e[n],enumerable:!0})},Oo=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of Mo(e))!No.call(t,s)&&s!==n&&Jt(t,s,{get:()=>e[s],enumerable:!(r=Do(e,s))||r.enumerable});return 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Released state is not on top of the stack.");if(e.type===Yn){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===Xe||e.type===gi){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},Je=-1,Jn=new DataView(new ArrayBuffer(0)),xa=new Uint8Array(Jn.buffer);try{Jn.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}mi=new RangeError("Insufficient data"),Sa=new $t,q=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Jn;bytes=xa;headByte=Je;stack=new Hn;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??oe.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??4294967295,this.maxBinLength=e?.maxBinLength??4294967295,this.maxArrayLength=e?.maxArrayLength??4294967295,this.maxMapLength=e?.maxMapLength??4294967295,this.maxExtLength=e?.maxExtLength??4294967295,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Sa,this.mapKeyConverter=e?.mapKeyConverter??wa}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=Je,this.stack.reset()}setBuffer(e){let n=Ye(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===Je&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=Ye(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${Ct(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let 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Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function sr(t){if(!L.existsSync(t))return null;let e;try{e=L.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function el(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(L.existsSync(t))try{r=sr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=Ze.dirname(t);L.existsSync(o)||L.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=L.openSync(c,"w",384);try{L.writeSync(a,JSON.stringify(i,null,2)+` +`).trim()===""}Ri.exports={chunk:qa}});var er=ye((wh,$i)=>{"use strict";var Ci="stub";function Ja(t){let e=2166136261;for(let n=0;n>>0}function Xa(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var Qn=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=Ja(n)||1,s=Xa(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Bi="text-embedding-3-small",Fi="https://api.openai.com/v1/embeddings",tr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Bi,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions}),s=await this._fetch(r);if(!Array.isArray(s.data)||s.data.length!==e.length)throw new Error(`OpenAI embedBatch response length mismatch: requested ${e.length}, received ${s.data?s.data.length:0}`);return[...s.data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var L=require("fs"),Ze=require("path"),Vi=require("os"),{StubProvider:Za}=er(),{OpenAIProvider:Qa}=Vt(),Wi={similarity_threshold:.8,decay_months:6},nr=["stub","openai"],ji={openai:"OPENAI_API_KEY"};function qi(){return Ze.join(Vi.homedir(),".config","workflows","config.json")}function Ki(t){return Ze.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Gi(){return Ze.join(Vi.homedir(),".config","workflows","credentials.json")}function rr(t){if(!L.existsSync(t))return null;let e;try{e=L.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function sr(t){if(!L.existsSync(t))return null;let e;try{e=L.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function el(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(L.existsSync(t))try{r=sr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=Ze.dirname(t);L.existsSync(o)||L.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=L.openSync(c,"w",384);try{L.writeSync(a,JSON.stringify(i,null,2)+` `)}finally{L.closeSync(a)}L.chmodSync(c,384),L.renameSync(c,t);try{L.chmodSync(t,384)}catch{}}function Yi(t,e){if(!t)return null;let n=ji[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Gi(),s;try{s=sr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function tl(t){let e=t&&t.systemPath||qi(),n=t&&t.projectPath||Ki(),r=rr(e),s=rr(n),i=Object.assign({},Wi);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=Yi(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function nl(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Za(n!=null?{dimensions:n}:void 0)}if(!nr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${nr.join(", ")}`);return t._api_key&&e==="openai"?new Qa({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function rl(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=Ze.dirname(t);L.existsSync(n)||L.mkdirSync(n,{recursive:!0});let r=t+".tmp";L.writeFileSync(r,JSON.stringify(e,null,2)+` -`,"utf8"),L.renameSync(r,t)}Hi.exports={DEFAULTS:Wi,AVAILABLE_PROVIDERS:nr,PROVIDER_ENV_VARS:ji,systemConfigPath:qi,projectConfigPath:Ki,credentialsPath:Gi,readConfigFile:rr,loadConfig:tl,loadCredentials:sr,writeCredentials:el,resolveApiKey:Yi,resolveProvider:nl,writeConfigFile:rl}});var ho=ge((Ih,fo)=>{"use strict";var ae=require("fs"),le=require("path"),sl=require("readline"),$=ir(),or=Zn(),{OpenAIProvider:il}=Vt(),Ji="text-embedding-3-small",Xi=1536,Zi=1536;function Qi(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`,"utf8"),L.renameSync(r,t)}Hi.exports={DEFAULTS:Wi,AVAILABLE_PROVIDERS:nr,PROVIDER_ENV_VARS:ji,systemConfigPath:qi,projectConfigPath:Ki,credentialsPath:Gi,readConfigFile:rr,loadConfig:tl,loadCredentials:sr,writeCredentials:el,resolveApiKey:Yi,resolveProvider:nl,writeConfigFile:rl}});var ho=ye((Ih,fo)=>{"use strict";var ae=require("fs"),le=require("path"),sl=require("readline"),$=ir(),or=Zn(),{OpenAIProvider:il}=Vt(),Ji="text-embedding-3-small",Xi=1536,Zi=1536;function Qi(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function eo(){let t=sl.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function Wt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Te(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function to(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` +`),t.close(),process.exit(130)}),t}function Wt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function _e(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function to(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` `||u==="\r")return c(),s.write(` `),n(o.trim());if(u===""){c(),s.write(` `),process.exit(130);return}if(u==="")return c(),s.write(` @@ -39,10 +39,10 @@ System config already exists at ${e} `),l.model&&process.stdout.write(` model: ${l.model} `),l.dimensions&&process.stdout.write(` dimensions: ${l.dimensions} `),process.stdout.write(` -`),!await Te(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. +`),!await _e(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. `),{provider:l.provider||null,previouslyStub:!l.provider}}else n.exists&&!n.valid?(process.stdout.write(` System config at ${e} is not valid: ${n.reason} -`),await Te(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. +`),await _e(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. `),process.exit(1))):process.stdout.write(` No system config found at ${e}. Creating a new one. `);let r=n.exists&&n.valid&&!n.knowledge.provider;process.stdout.write(` @@ -67,7 +67,7 @@ Found an existing API key in ${s} \u2014 validating via a test embed... `);try{await jt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. `);return}catch(c){let{message:a,hint:l}=qt(c);if(process.stdout.write(`${a} ${l} -`),!await Te(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. +`),!await _e(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. `);return}}}await ol(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function ol(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key @@ -92,12 +92,12 @@ Validating via a test embed... `);try{await jt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=qt(o);if(process.stdout.write(`${c} ${a} -`),!await Te(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. +`),!await _e(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). `);return}}async function lo(t){let e=le.resolve(process.cwd(),".workflows",".knowledge"),n=le.join(e,"config.json"),r=le.join(e,"store.msp"),s=le.join(e,"metadata.json"),i=oo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} -`),!await Te(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. +`),!await _e(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. @@ -120,7 +120,7 @@ Knowledge base setup Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}fo.exports={cmdSetup:cl,requireTTY:Qi,createPrompter:eo,ask:Wt,askYesNo:Te,askSecret:to,buildSystemConfigOpenAI:no,buildSystemConfigStub:ro,buildProjectConfigEmpty:so,detectSystemConfig:io,detectProjectInit:oo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:ao,runSystemConfigStep:co,runProjectInitStep:lo,runInitialIndexStep:uo,KEYWORD_ONLY_DIMENSIONS:Zi,OPENAI_DEFAULT_MODEL:Ji,OPENAI_DEFAULT_DIMENSIONS:Xi}});var A=require("fs"),F=require("path"),k=Zn(),yo=Li(),{StubProvider:al}=er(),{OpenAIProvider:ll}=Vt(),_e=ir(),wo=ho(),ur=["research","discussion","investigation","specification"],ul=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(A.existsSync(t))return t;if(A.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}fo.exports={cmdSetup:cl,requireTTY:Qi,createPrompter:eo,ask:Wt,askYesNo:_e,askSecret:to,buildSystemConfigOpenAI:no,buildSystemConfigStub:ro,buildProjectConfigEmpty:so,detectSystemConfig:io,detectProjectInit:oo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:ao,runSystemConfigStep:co,runProjectInitStep:lo,runInitialIndexStep:uo,KEYWORD_ONLY_DIMENSIONS:Zi,OPENAI_DEFAULT_MODEL:Ji,OPENAI_DEFAULT_DIMENSIONS:Xi}});var A=require("fs"),F=require("path"),k=Zn(),yo=Li(),{StubProvider:al}=er(),{OpenAIProvider:ll}=Vt(),pe=ir(),wo=ho(),ur=["research","discussion","investigation","specification"],ul=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(A.existsSync(t))return t;if(A.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),tt=[1e3,2e3,4e3],dl=5,ar=10,dr=1536,po=!1;function xo(t){let e=[],n={},r=[],s=0;for(;s [options] @@ -165,8 +165,8 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `)}}await Ao(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${l} already indexed. `)}async function Eo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;A.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Kt(t){let e=K(),n=re();A.existsSync(e)&&await k.withLock(n,async()=>{if(!A.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function Ao(t,e,n){let r=K();if(!A.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=ar){process.stderr.write(`Pending item ${o.file} exceeded ${ar} attempts \u2014 evicting. Last error: ${o.error} `),await Kt(o.file);continue}let c=F.resolve(o.file);if(!A.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. -`),await Kt(o.file);continue}let a;try{a=fr(o.file)}catch{await Kt(o.file);continue}try{await nt(()=>hr(o.file,a,t,e),{maxAttempts:3,backoff:tt}),await Kt(o.file)}catch(l){await Eo(o.file,l.message)}}}var lr=10;function pe(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function vo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;A.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=pe(t),c=i.pending_removals.findIndex(l=>pe(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function go(t){let e=K(),n=re();A.existsSync(e)&&await k.withLock(n,async()=>{if(!A.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=pe(t);r.pending_removals=r.pending_removals.filter(i=>pe(i)!==s),k.writeMetadata(e,r)})}async function ko(){let t=K();if(!A.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=lr){process.stderr.write(`Pending removal for ${pe(r)} exceeded ${lr} attempts \u2014 evicting. -`),await go(r);continue}try{await To({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${pe(r)}. +`),await Kt(o.file);continue}let a;try{a=fr(o.file)}catch{await Kt(o.file);continue}try{await nt(()=>hr(o.file,a,t,e),{maxAttempts:3,backoff:tt}),await Kt(o.file)}catch(l){await Eo(o.file,l.message)}}}var lr=10;function me(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function vo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;A.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=me(t),c=i.pending_removals.findIndex(l=>me(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function go(t){let e=K(),n=re();A.existsSync(e)&&await k.withLock(n,async()=>{if(!A.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=me(t);r.pending_removals=r.pending_removals.filter(i=>me(i)!==s),k.writeMetadata(e,r)})}async function ko(){let t=K();if(!A.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=lr){process.stderr.write(`Pending removal for ${me(r)} exceeded ${lr} attempts \u2014 evicting. +`),await go(r);continue}try{await To({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${me(r)}. `),await go(r)}catch(s){try{await vo({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function To(t){let e=Z(),n=re();if(!A.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var ml={high:4,medium:3,"low-medium":2,low:1};function gl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function yl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var cr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},wl=.1;function xl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=wl);let c=ml[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Sl(t){let e=[];for(let n of t)(!n.field||!cr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(cr).join(", ")} `),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value `),process.exit(1)),e.push({field:cr[n.field],value:n.value});return e}function Il(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. @@ -179,12 +179,14 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `)+` `)}async function El(){let t=X(),e=F.join(t,"config.json"),n=Z();if(!A.existsSync(t)){process.stdout.write(`not-ready `);return}if(!A.existsSync(e)){process.stdout.write(`not-ready +`);return}try{pe.readConfigFile(e)}catch(r){process.stderr.write(`config error: ${r.message} +`),process.stdout.write(`not-ready `);return}if(!A.existsSync(n)){process.stdout.write(`not-ready `);return}try{await k.loadStore(n)}catch{process.stdout.write(`not-ready `);return}process.stdout.write(`ready `)}async function Al(){let t=X(),e=Z(),n=K(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!A.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await k.loadStore(e),i=await k.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let u=(A.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),A.existsSync(n)){let p=k.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${ar}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${pe(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${lr})`)}let y;try{y=_e.loadConfig()}catch{y=null}if(y){let w=_e.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),A.existsSync(F.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=pr(),y=[];for(let w of p)await bo(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} +`);return}let s=await k.loadStore(e),i=await k.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let u=(A.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),A.existsSync(n)){let p=k.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${ar}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${me(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${lr})`)}let y;try{y=pe.loadConfig()}catch{y=null}if(y){let w=pe.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),A.existsSync(F.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=pr(),y=[];for(let w of p)await bo(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} `)}let h=[],m=null;try{m=JSON.parse(Qe(["list"]))}catch(p){et("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` `)}async function vl(t,e,n,r){let s=Z(),i=K(),o=re();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. @@ -205,15 +207,15 @@ Rename them back manually to recover. Rollback error: ${f.message} `);return}if(await ko(),!A.existsSync(n)){process.stdout.write(`Removed 0 chunks for ${r} `);return}try{let s=await To(e);process.stdout.write(`Removed ${s} chunks for ${r} `)}catch(s){await vo(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. -`),process.exit(1)}}function _l(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Dl(t){try{let e=Qe(["get",t,"status"]).trim(),n=null;try{n=Qe(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){et(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return et(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Ml(t,e,n){await ko();let r=Z(),s=re(),i=n&&n.decay_months!==void 0?n.decay_months:_e.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`),process.exit(1)}}function _l(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Dl(t){try{let e=Qe(["get",t,"status"]).trim(),n=null;try{n=Qe(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){et(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return et(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Ml(t,e,n){await ko();let r=Z(),s=re(),i=n&&n.decay_months!==void 0?n.decay_months:pe.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. `),process.exit(1));let o=i;if(!A.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchFulltext(c,{term:"",limit:1e5});if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(d)){let p=Dl(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=gl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` `)+` `);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),x=new Set;for(let p of h){let y=`${p.work_unit}|${p.phase}|${p.topic}`;x.has(y)||(x.add(y),await k.removeByIdentity(g,p))}await k.saveStore(g,r)});let S=[];S.push(`Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)S.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(S.join(` `)+` `)}async function _o(){let t=process.argv.slice(2),{positional:e,flags:n,boosts:r}=xo(t),s=e[0],i=e.slice(1),o=So(n,r);s||(process.stderr.write(mo+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=_e.loadConfig(),a=_e.resolveProvider(c)),s){case"index":await pl(i,o,c,a);break;case"query":await bl(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await Al();break;case"remove":await Tl(i,o,c,a);break;case"compact":await Ml(i,o,c,a);break;case"rebuild":await vl(i,o,c,a);break;case"setup":await wo.cmdSetup(Gt,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=pe.loadConfig(),a=pe.resolveProvider(c)),s){case"index":await pl(i,o,c,a);break;case"query":await bl(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await Al();break;case"remove":await Tl(i,o,c,a);break;case"compact":await Ml(i,o,c,a);break;case"rebuild":await vl(i,o,c,a);break;case"setup":await wo.cmdSetup(Gt,i,o);break;default:process.stderr.write(`Unknown command "${s}". ${mo} -`),process.exit(1)}}module.exports={parseArgs:xo,buildOptions:So,deriveIdentity:fr,resolveProviderState:Io,withRetry:nt,main:_o,cmdIndexBulk:Gt,StubProvider:al,OpenAIProvider:ll,store:k,chunker:yo,config:_e,setup:wo,knowledgeDir:X,storePath:Z,metadataPath:K,lockFilePath:re,INDEXED_PHASES:ur,KEYWORD_ONLY_DIMENSIONS:dr};require.main===module&&_o().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` +`),process.exit(1)}}module.exports={parseArgs:xo,buildOptions:So,deriveIdentity:fr,resolveProviderState:Io,withRetry:nt,main:_o,cmdIndexBulk:Gt,StubProvider:al,OpenAIProvider:ll,store:k,chunker:yo,config:pe,setup:wo,knowledgeDir:X,storePath:Z,metadataPath:K,lockFilePath:re,INDEXED_PHASES:ur,KEYWORD_ONLY_DIMENSIONS:dr};require.main===module&&_o().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 01844f83e..1d2044a29 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1274,6 +1274,18 @@ async function cmdCheck(/* args, options, cfg, provider */) { return; } + // Condition 2b: config.json parses and has the expected shape. + // Without this, a corrupted config would pass `check` and the user + // would only see the JSON parse error later on `index` or `query`, + // with no hint that the root cause is the config file itself. + try { + config.readConfigFile(configFile); + } catch (err) { + process.stderr.write(`config error: ${err.message}\n`); + process.stdout.write('not-ready\n'); + return; + } + // Condition 3: store.msp exists and is loadable. if (!fs.existsSync(sp)) { process.stdout.write('not-ready\n'); diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 2130b5b60..a3e751be6 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -757,6 +757,54 @@ assert_eq "outputs not-ready" "not-ready" "$(echo "$output" | tr -d '\n')" assert_eq "exits 0" "0" "$exit_code" teardown_project +# --- Test 37b: Check not-ready when config.json is corrupt (invalid JSON) --- +echo "Test 37b: Check not-ready (corrupt config JSON)" +setup_project +# Write invalid JSON to the config — previously this slipped through and +# check reported 'ready'; user only discovered the problem on a later +# index/query with a cryptic JSON parse error. +echo 'not valid json{{' > "$TEST_ROOT/.workflows/.knowledge/config.json" +stdout=$(run_kb check 2>/dev/null) +stderr=$(run_kb check 2>&1 >/dev/null) +assert_eq "outputs not-ready on corrupt config" "not-ready" "$(echo "$stdout" | tr -d '\n')" +assert_eq "writes config diagnostic on stderr" "true" \ + "$(echo "$stderr" | grep -q 'config error' && echo true || echo false)" +teardown_project + +# --- Test 37c: Check not-ready when config lacks 'knowledge' key --- +echo "Test 37c: Check not-ready (config missing knowledge key)" +setup_project +echo '{"other":"stuff"}' > "$TEST_ROOT/.workflows/.knowledge/config.json" +stdout=$(run_kb check 2>/dev/null) +stderr=$(run_kb check 2>&1 >/dev/null) +assert_eq "outputs not-ready on shape mismatch" "not-ready" "$(echo "$stdout" | tr -d '\n')" +assert_eq "diagnostic mentions 'knowledge' key" "true" \ + "$(echo "$stderr" | grep -q 'knowledge' && echo true || echo false)" +teardown_project + +# --- Test 37d: Corrupt config overrides otherwise-ready state --- +# Strongest guard: an otherwise-healthy KB (valid store, valid metadata) +# whose config gets corrupted. Pre-fix, cmdCheck only checked file +# existence for config — so this reported 'ready' and deferred the +# parse error to the next index/query. Now: not-ready. +echo "Test 37d: Check not-ready (corrupt config overrides ready state)" +setup_project +create_work_unit "auth-flow" "feature" "Auth" +write_stub_config +create_discussion_file "auth-flow" "auth-flow" +run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 +# Sanity: with valid config, check reports ready. +baseline=$(run_kb check 2>/dev/null | tr -d '\n') +assert_eq "baseline is ready" "ready" "$baseline" +# Now corrupt the config; store + metadata remain intact. +echo 'not valid json{{' > "$TEST_ROOT/.workflows/.knowledge/config.json" +stdout=$(run_kb check 2>/dev/null) +stderr=$(run_kb check 2>&1 >/dev/null) +assert_eq "flips to not-ready on corrupt config" "not-ready" "$(echo "$stdout" | tr -d '\n')" +assert_eq "stderr explains why" "true" \ + "$(echo "$stderr" | grep -q 'config error' && echo true || echo false)" +teardown_project + # ============================================================================ # REMOVE COMMAND TESTS # ============================================================================ From 646245b809283a843dc39084d9b3230f8dfeda52 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 22:29:07 +0100 Subject: [PATCH 33/78] feat(knowledge): centralise validation errors via UserError class MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit User-visible validation failures previously threw plain Error, so the top-level main().catch printed the full stack trace to stderr. Ten lines of Node internal frames followed every 'bad path' or 'provider mismatch' message — user-hostile for what are normal validation errors. New UserError class sits alongside existing helpers in index.js. Three contracts: 1. Thrown at input-validation sites only (bad path, unindexed phase, provider/model mismatch, missing chunking config, missing work unit manifest, empty-file refusal). 2. withRetry does not retry UserError (same treatment as TypeError et al — retrying a permanent user-input failure is waste). 3. main().catch prints 'Error: ' alone for UserError; full stack for anything else (likely a real bug). Converted throw sites: - deriveIdentity: 7 throws (path mismatch, invalid wu/topic, phase not indexed, per-phase subpath validation). - readWorkType: 2 throws (manifest missing, work_type field missing). - resolveProviderState: 2 throws (index-side provider mismatch). - resolveQueryMode: 2 throws (query-side provider mismatch). - indexSingleFile: 2 throws (missing chunking config, empty file). Kept as plain Error: - Store schema TOCTOU throw in indexSingleFile (intentionally retryable via withRetry). UserError exported from module.exports for downstream consumers. Tests: Test 14 extended to assert no stack frames on stderr for an unindexed-phase index invocation. New Test 14b covers the non-.workflows path case. Confirmed both stack-suppression assertions fail on pre-fix code (reverted the catch-handler branch, re-ran, saw FAIL on both). 157/157 CLI tests, smoke, retry, integration, store all green. --- .../workflow-knowledge/scripts/knowledge.cjs | 193 +++++++++--------- src/knowledge/index.js | 60 ++++-- tests/scripts/test-knowledge-cli.sh | 21 ++ 3 files changed, 162 insertions(+), 112 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 2448dec9f..41d4b6b16 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,48 +1,48 @@ -"use strict";var Jt=Object.defineProperty;var Do=Object.getOwnPropertyDescriptor;var Mo=Object.getOwnPropertyNames;var No=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var ye=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),ee=(t,e)=>{for(var n in 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e=this.view.getFloat64(this.pos);return this.pos+=8,e}}});function wi(t,e){return new K(e).decode(t)}function xi(t,e){return new K(e).decodeMulti(t)}var Si=v(()=>{Ft()});function ba(t){return t[Symbol.asyncIterator]!=null}async function*Aa(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function zt(t){return ba(t)?t:Aa(t)}var Ii=v(()=>{});async function bi(t,e){let n=zt(t);return new K(e).decodeAsync(n)}function Ai(t,e){let n=zt(t);return new K(e).decodeArrayStream(n)}function Ei(t,e){let n=zt(t);return new K(e).decodeStream(n)}var vi=v(()=>{Ft();Ii()});var ki={};te(ki,{DecodeError:()=>$,Decoder:()=>K,EXT_TIMESTAMP:()=>Fn,Encoder:()=>_e,ExtData:()=>re,ExtensionCodec:()=>ce,decode:()=>wi,decodeArrayStream:()=>Ai,decodeAsync:()=>bi,decodeMulti:()=>xi,decodeMultiStream:()=>Ei,decodeTimestampExtension:()=>qn,decodeTimestampToTimeSpec:()=>jn,encode:()=>fi,encodeDateToTimeSpec:()=>Vn,encodeTimeSpecToTimestamp:()=>zn,encodeTimestampExtension:()=>Wn});var Ti=v(()=>{hi();Si();vi();Ft();Ut();Yn();Ct();Bn();Kn()});var Qn=we((yh,Oi)=>{"use strict";var F=require("fs"),j=(ii(),gr(si)),{encode:Ea,decode:va}=(Ti(),gr(ki)),Zn=["id","content","work_unit","work_type","phase","topic","confidence","source_file","timestamp"];function _i(t){if(!Number.isInteger(t)||t<=0)throw new Error(`createStore: dimensions must be a positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function ka(t){let 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Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function co(t){let e=$.systemConfigPath(),n=io(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(u==="\x7F"||u==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}u<" "||(o+=u,s.write("*"))}};r.on("data",a)})}function ro({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function so(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function io(){return{knowledge:{}}}function oo(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function co(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function qt({apiKey:t,model:e,dimensions:n}){let s=await new ol({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Kt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function ao(t){let e=B.systemConfigPath(),n=oo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let l=n.knowledge;if(process.stdout.write(` provider: ${l.provider==null?"(none \u2014 stub mode)":l.provider} `),l.model&&process.stdout.write(` model: ${l.model} `),l.dimensions&&process.stdout.write(` dimensions: ${l.dimensions} `),process.stdout.write(` -`),!await _e(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. +`),!await De(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. `),{provider:l.provider||null,previouslyStub:!l.provider}}else n.exists&&!n.valid?(process.stdout.write(` System config at ${e} is not valid: ${n.reason} -`),await _e(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. +`),await De(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. `),process.exit(1))):process.stdout.write(` No system config found at ${e}. Creating a new one. `);let r=n.exists&&n.valid&&!n.knowledge.provider;process.stdout.write(` @@ -50,26 +50,26 @@ Embedding provider: `),process.stdout.write(` openai \u2014 OpenAI embeddings API (requires an API key) `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) -`);let s;for(;s=(await Wt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return $.writeConfigFile(e,ro()),process.stdout.write(` +`);let s;for(;s=(await jt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". +`);if(s==="skip")return B.writeConfigFile(e,so()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await Wt(t,"Embedding model",Ji),o=await Wt(t,"Vector dimensions",String(Xi)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),$.writeConfigFile(e,no({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await jt(t,"Embedding model",Xi),o=await jt(t,"Vector dimensions",String(Zi)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),B.writeConfigFile(e,ro({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let a=$.PROVIDER_ENV_VARS.openai;return await ao(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function ao(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`);let a=B.PROVIDER_ENV_VARS.openai;return await lo(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function lo(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... -`);try{await jt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. -`)}catch(c){let{message:a,hint:l}=qt(c);process.stdout.write(`${a} +`);try{await qt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. +`)}catch(c){let{message:a,hint:l}=Kt(c);process.stdout.write(`${a} ${l} `),process.stdout.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. Setup will continue \u2014 indexing will queue until the key is corrected. -`)}return}let o=$.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` +`)}return}let o=B.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` Found an existing API key in ${s} \u2014 validating via a test embed... -`);try{await jt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. -`);return}catch(c){let{message:a,hint:l}=qt(c);if(process.stdout.write(`${a} +`);try{await qt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. +`);return}catch(c){let{message:a,hint:l}=Kt(c);if(process.stdout.write(`${a} ${l} -`),!await _e(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. +`),!await De(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await ol(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function ol(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await cl(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function cl(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -85,45 +85,45 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await to(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await no(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... -`);try{await jt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=qt(o);if(process.stdout.write(`${c} +`);try{await qt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=Kt(o);if(process.stdout.write(`${c} ${a} -`),!await _e(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. +`),!await De(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. -`);return}continue}$.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function lo(t){let e=le.resolve(process.cwd(),".workflows",".knowledge"),n=le.join(e,"config.json"),r=le.join(e,"store.msp"),s=le.join(e,"metadata.json"),i=oo(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}continue}B.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). +`);return}}async function uo(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=co(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} -`),!await _e(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. +`),!await De(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);ae.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,so()),process.stdout.write(` config.json written -`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Zi;if(!i.storeExists||i.fullyInitialised){let l=await or.createStore(a);await or.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) -`)}return(!i.metadataExists||i.fullyInitialised)&&(or.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function uo(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` +`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,io()),process.stdout.write(` config.json written +`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Qi;if(!i.storeExists||i.fullyInitialised){let l=await cr.createStore(a);await cr.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) +`)}return(!i.metadataExists||i.fullyInitialised)&&(cr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written +`)),{created:!0,provider:c,dimensions:a}}async function fo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function cl(t,e,n){Qi();let r=le.resolve(process.cwd(),".workflows");ae.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=eo(),i;try{process.stdout.write(` +`)}}async function al(t,e,n){eo();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=to(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await co(s),await lo(s)}finally{s.close()}await uo(t,n),process.stdout.write(` +`),i=await ao(s),await uo(s)}finally{s.close()}await fo(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}fo.exports={cmdSetup:cl,requireTTY:Qi,createPrompter:eo,ask:Wt,askYesNo:_e,askSecret:to,buildSystemConfigOpenAI:no,buildSystemConfigStub:ro,buildProjectConfigEmpty:so,detectSystemConfig:io,detectProjectInit:oo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:ao,runSystemConfigStep:co,runProjectInitStep:lo,runInitialIndexStep:uo,KEYWORD_ONLY_DIMENSIONS:Zi,OPENAI_DEFAULT_MODEL:Ji,OPENAI_DEFAULT_DIMENSIONS:Xi}});var A=require("fs"),F=require("path"),k=Zn(),yo=Li(),{StubProvider:al}=er(),{OpenAIProvider:ll}=Vt(),pe=ir(),wo=ho(),ur=["research","discussion","investigation","specification"],ul=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(A.existsSync(t))return t;if(A.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}ho.exports={cmdSetup:al,requireTTY:eo,createPrompter:to,ask:jt,askYesNo:De,askSecret:no,buildSystemConfigOpenAI:ro,buildSystemConfigStub:so,buildProjectConfigEmpty:io,detectSystemConfig:oo,detectProjectInit:co,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:lo,runSystemConfigStep:ao,runProjectInitStep:uo,runInitialIndexStep:fo,KEYWORD_ONLY_DIMENSIONS:Qi,OPENAI_DEFAULT_MODEL:Xi,OPENAI_DEFAULT_DIMENSIONS:Zi}});var E=require("fs"),z=require("path"),k=Qn(),wo=Ci(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Wt(),me=or(),xo=po(),dr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),tt=[1e3,2e3,4e3],dl=5,ar=10,dr=1536,po=!1;function xo(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,lr=10,fr=1536,mo=!1,P=class extends Error{constructor(e){super(e),this.name="UserError"}};function So(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -148,74 +148,75 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results - --dry-run Preview without making changes`;function X(){return F.resolve(process.cwd(),".workflows",".knowledge")}function Z(){return F.join(X(),"store.msp")}function K(){return F.join(X(),"metadata.json")}function re(){return F.join(X(),".lock")}function fl(t){return new Promise(e=>setTimeout(e,t))}async function nt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||tt,s;for(let i=0;isetTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;ihr(s,o,n,r),{maxAttempts:3,backoff:tt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await Ao(n,r,dl)}async function hr(t,e,n,r){let s=hl(e.workUnit),i=F.join(__dirname,"..","chunking",e.phase+".json");if(!A.existsSync(i))throw new Error(`Chunking config not found: ${i}`);let o=JSON.parse(A.readFileSync(i,"utf8")),c=F.resolve(t),a=A.readFileSync(c,"utf8"),l=yo.chunk(a,o);if(l.length===0)throw new Error(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=X(),d=Z(),f=K(),h=re();A.existsSync(u)||A.mkdirSync(u,{recursive:!0});let m,S,g=A.existsSync(d),x=A.existsSync(f);g&&(m=await k.loadStore(d)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=Io(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||dr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let Q=String(M+1).padStart(3,"0"),G={id:`${e.workUnit}-${e.phase}-${e.topic}-${Q}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(G.embedding=w[M]),G});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(d):A.existsSync(d)&&(m=await k.loadStore(d)),p==="full"&&A.existsSync(f)){let M=k.readMetadata(f),Q=y.dimensions();if(M.provider&&M.dimensions!==Q)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${Q}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,d);let _=A.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function Qe(t){let{execFileSync:e}=require("child_process");return e("node",[ul,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function et(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} -`)}async function bo(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function pr(){let t=[],e;try{let n=Qe(["list"]);e=JSON.parse(n)}catch(n){return et("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of ur){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Qe(["resolve",`${r}.${s}.${o}`]).trim();l&&A.existsSync(F.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){et(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Gt(t,e,n){let r=pr(),s=X(),i=Z();A.existsSync(s)||A.mkdirSync(s,{recursive:!0});let o=null;A.existsSync(i)&&(o=await k.loadStore(i));let c=0,a=0,l=0;for(let u of r){if(o&&await bo(o,u.workUnit,u.phase,u.topic)){l++;continue}try{let d={workUnit:u.workUnit,phase:u.phase,topic:u.topic},f=await nt(()=>hr(u.file,d,e,n),{maxAttempts:3,backoff:tt});process.stdout.write(`Indexing ${u.file}... ${f} chunks -`),c++,a+=f,A.existsSync(i)&&(o=await k.loadStore(i))}catch(d){await Eo(u.file,d.message),process.stderr.write(`Failed to index ${u.file} after 3 attempts: ${d.message}. Added to pending queue. + Current config has no provider configured.`)}async function ml(t,e,n,r){if(t.length===0)return Yt(e,n,r);let s=t[0],i=z.resolve(s);E.existsSync(i)||(process.stderr.write(`File not found: ${i} +`),process.exit(1));let o=hr(s),c=await rt(()=>pr(s,o,n,r),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await vo(n,r,fl)}async function pr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new P(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=wo.chunk(a,o);if(l.length===0)throw new P(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=Z(),d=Q(),f=G(),h=se();E.existsSync(u)||E.mkdirSync(u,{recursive:!0});let m,S,g=E.existsSync(d),x=E.existsSync(f);g&&(m=await k.loadStore(d)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=bo(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||fr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let ee=String(M+1).padStart(3,"0"),Y={id:`${e.workUnit}-${e.phase}-${e.topic}-${ee}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(Y.embedding=w[M]),Y});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(d):E.existsSync(d)&&(m=await k.loadStore(d)),p==="full"&&E.existsSync(f)){let M=k.readMetadata(f),ee=y.dimensions();if(M.provider&&M.dimensions!==ee)throw new Error(`Store schema changed during index (concurrent rebuild). 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Added to pending queue. `),d.stack&&process.stderr.write(d.stack+` -`)}}await Ao(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${l} already indexed. -`)}async function Eo(t,e){let n=K(),r=X(),s=re();A.existsSync(r)||A.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;A.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Kt(t){let e=K(),n=re();A.existsSync(e)&&await k.withLock(n,async()=>{if(!A.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function Ao(t,e,n){let r=K();if(!A.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=ar){process.stderr.write(`Pending item ${o.file} exceeded ${ar} attempts \u2014 evicting. 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Valid fields: ${Object.keys(cr).join(", ")} +`)}}await vo(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${l} already indexed. +`)}async function Eo(t,e){let n=G(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Gt(t){let e=G(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function vo(t,e,n){let r=G();if(!E.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=lr){process.stderr.write(`Pending item ${o.file} exceeded ${lr} attempts \u2014 evicting. Last error: ${o.error} +`),await Gt(o.file);continue}let c=z.resolve(o.file);if(!E.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. +`),await Gt(o.file);continue}let a;try{a=hr(o.file)}catch{await Gt(o.file);continue}try{await rt(()=>pr(o.file,a,t,e),{maxAttempts:3,backoff:nt}),await Gt(o.file)}catch(l){await Eo(o.file,l.message)}}}var ur=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function ko(t,e){let n=G(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function yo(t){let e=G(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function To(){let t=G();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=ur){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${ur} attempts \u2014 evicting. +`),await yo(r);continue}try{await _o({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. +`),await yo(r)}catch(s){try{await ko({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function _o(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var gl={high:4,medium:3,"low-medium":2,low:1};function yl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function wl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var ar={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},xl=.1;function Sl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=xl);let c=gl[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Il(t){let e=[];for(let n of t)(!n.field||!ar[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". 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Store was indexed with: provider=${r}, model=${s} - Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new Error(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. + Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new P(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} - Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function bl(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--work-unit ...] [--work-type ...] [--phase ...] [--topic ...] [--boost: ]... 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Queued for automatic retry on next remove/compact. +`),process.exit(1)}}function Dl(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Ml(t){try{let e=et(["get",t,"status"]).trim(),n=null;try{n=et(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){tt(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return tt(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Nl(t,e,n){await To();let r=Q(),s=se(),i=n&&n.decay_months!==void 0?n.decay_months:me.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!A.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchFulltext(c,{term:"",limit:1e5});if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(d)){let p=Dl(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=gl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` +`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchFulltext(c,{term:"",limit:1e5});if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(d)){let p=Ml(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=yl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` `)+` `);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),x=new Set;for(let p of h){let y=`${p.work_unit}|${p.phase}|${p.topic}`;x.has(y)||(x.add(y),await k.removeByIdentity(g,p))}await k.saveStore(g,r)});let S=[];S.push(`Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)S.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(S.join(` `)+` -`)}async function _o(){let t=process.argv.slice(2),{positional:e,flags:n,boosts:r}=xo(t),s=e[0],i=e.slice(1),o=So(n,r);s||(process.stderr.write(mo+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=pe.loadConfig(),a=pe.resolveProvider(c)),s){case"index":await pl(i,o,c,a);break;case"query":await bl(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await Al();break;case"remove":await Tl(i,o,c,a);break;case"compact":await Ml(i,o,c,a);break;case"rebuild":await vl(i,o,c,a);break;case"setup":await wo.cmdSetup(Gt,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`)}async function Do(){let t=process.argv.slice(2),{positional:e,flags:n,boosts:r}=So(t),s=e[0],i=e.slice(1),o=Io(n,r);s||(process.stderr.write(go+` +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await ml(i,o,c,a);break;case"query":await Al(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await vl();break;case"remove":await _l(i,o,c,a);break;case"compact":await Nl(i,o,c,a);break;case"rebuild":await kl(i,o,c,a);break;case"setup":await xo.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". -${mo} -`),process.exit(1)}}module.exports={parseArgs:xo,buildOptions:So,deriveIdentity:fr,resolveProviderState:Io,withRetry:nt,main:_o,cmdIndexBulk:Gt,StubProvider:al,OpenAIProvider:ll,store:k,chunker:yo,config:pe,setup:wo,knowledgeDir:X,storePath:Z,metadataPath:K,lockFilePath:re,INDEXED_PHASES:ur,KEYWORD_ONLY_DIMENSIONS:dr};require.main===module&&_o().catch(t=>{process.stderr.write(String(t&&t.stack?t.stack:t)+` +${go} +`),process.exit(1)}}module.exports={parseArgs:So,buildOptions:Io,deriveIdentity:hr,resolveProviderState:bo,withRetry:rt,UserError:P,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:wo,config:me,setup:xo,knowledgeDir:Z,storePath:Q,metadataPath:G,lockFilePath:se,INDEXED_PHASES:dr,KEYWORD_ONLY_DIMENSIONS:fr};require.main===module&&Do().catch(t=>{t instanceof P?process.stderr.write("Error: "+t.message+` +`):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 1d2044a29..014cadab6 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -52,6 +52,24 @@ const KEYWORD_ONLY_DIMENSIONS = 1536; // spamming bulk-index runs that iterate over many files. let stubUpgradeWarned = false; +// --------------------------------------------------------------------------- +// UserError — marker class for user-visible validation failures. Thrown at +// input-validation sites (bad path, provider mismatch, missing chunking +// config, etc.) where the error message is actionable advice for the user. +// +// Two behavioural contracts: +// 1. withRetry does not retry UserError (same treatment as programming +// errors — retry would waste backoff budget on a permanent failure). +// 2. The top-level main().catch prints the message alone, no stack trace. +// --------------------------------------------------------------------------- + +class UserError extends Error { + constructor(message) { + super(message); + this.name = 'UserError'; + } +} + // --------------------------------------------------------------------------- // Flag parsing // --------------------------------------------------------------------------- @@ -199,7 +217,10 @@ async function withRetry(fn, opts) { } catch (err) { // Don't retry programming errors — retrying a TypeError just burns // 7s of backoff before the stack trace reaches the user. + // Also don't retry UserError: these are user-input validation + // failures and will fail identically on every retry. if ( + err instanceof UserError || err instanceof TypeError || err instanceof ReferenceError || err instanceof SyntaxError || @@ -232,7 +253,7 @@ function deriveIdentity(filePath) { // Match .workflows/{work_unit}/{phase}/{rest} const match = /\.workflows\/([^/]+)\/(research|discussion|investigation|specification)\/(.+)$/.exec(norm); if (!match) { - throw new Error( + throw new UserError( `Cannot derive identity from path: ${filePath}\n` + 'Expected path matching: .workflows/{work_unit}/{phase}/...' ); @@ -246,12 +267,12 @@ function deriveIdentity(filePath) { // anything-without-slash, which would otherwise accept `..` or `.` // and escape the .workflows directory when path.resolve() is applied. if (workUnit === '.' || workUnit === '..' || workUnit.startsWith('.')) { - throw new Error(`Invalid work unit name: "${workUnit}"`); + throw new UserError(`Invalid work unit name: "${workUnit}"`); } // Validate indexed phase. if (!INDEXED_PHASES.includes(phase)) { - throw new Error(`File is in phase "${phase}" which is not indexed.`); + throw new UserError(`File is in phase "${phase}" which is not indexed.`); } let topic; @@ -259,7 +280,7 @@ function deriveIdentity(filePath) { // .workflows/{wu}/specification/{topic}/specification.md const specMatch = /^([^/]+)\/specification\.md$/.exec(rest); if (!specMatch) { - throw new Error( + throw new UserError( `Unexpected specification path structure: ${rest}\n` + 'Expected: .workflows/{work_unit}/specification/{topic}/specification.md' ); @@ -269,7 +290,7 @@ function deriveIdentity(filePath) { // .workflows/{wu}/{phase}/{topic}.md — flat file, no subdirectories. const flatMatch = /^([^/]+)\.md$/.exec(rest); if (!flatMatch) { - throw new Error( + throw new UserError( `Unexpected ${phase} path structure: ${rest}\n` + `Expected: .workflows/{work_unit}/${phase}/{topic}.md` ); @@ -279,7 +300,7 @@ function deriveIdentity(filePath) { // .workflows/{wu}/research/{filename}.md — flat file. const resMatch = /^([^/]+)\.md$/.exec(rest); if (!resMatch) { - throw new Error( + throw new UserError( `Unexpected research path structure: ${rest}\n` + 'Expected: .workflows/{work_unit}/research/{filename}.md' ); @@ -288,7 +309,7 @@ function deriveIdentity(filePath) { } if (topic === '.' || topic === '..' || topic.startsWith('.')) { - throw new Error(`Invalid topic name: "${topic}"`); + throw new UserError(`Invalid topic name: "${topic}"`); } return { workUnit, phase, topic }; @@ -300,11 +321,11 @@ function deriveIdentity(filePath) { function readWorkType(workUnit) { const manifestFile = path.resolve(process.cwd(), '.workflows', workUnit, 'manifest.json'); if (!fs.existsSync(manifestFile)) { - throw new Error(`Work unit manifest not found: ${manifestFile}`); + throw new UserError(`Work unit manifest not found: ${manifestFile}`); } const manifest = JSON.parse(fs.readFileSync(manifestFile, 'utf8')); if (!manifest.work_type) { - throw new Error(`Work unit manifest missing work_type field: ${manifestFile}`); + throw new UserError(`Work unit manifest missing work_type field: ${manifestFile}`); } return manifest.work_type; } @@ -350,7 +371,7 @@ function resolveProviderState(metadata, cfg, provider) { } // Case 2: mismatch. - throw new Error( + throw new UserError( 'Provider/model changed since last index. Run `knowledge rebuild` to reindex.\n' + ` Store: provider=${metaProvider}, model=${metaModel}, dimensions=${metaDimensions}\n` + ` Config: provider=${cfg.provider}, model=${curModel}, dimensions=${curDimensions}` @@ -358,7 +379,7 @@ function resolveProviderState(metadata, cfg, provider) { } // Case 3: metadata has provider but current config does not. - throw new Error( + throw new UserError( 'Provider/model changed since last index. Run `knowledge rebuild` to reindex.\n' + ` Store was indexed with: provider=${metaProvider}, model=${metaModel}\n` + ' Current config has no provider configured.' @@ -410,7 +431,7 @@ async function indexSingleFile(sourceFile, identity, cfg, provider) { // Load chunking config. const chunkConfigPath = path.join(__dirname, '..', 'chunking', identity.phase + '.json'); if (!fs.existsSync(chunkConfigPath)) { - throw new Error(`Chunking config not found: ${chunkConfigPath}`); + throw new UserError(`Chunking config not found: ${chunkConfigPath}`); } const chunkConfig = JSON.parse(fs.readFileSync(chunkConfigPath, 'utf8')); @@ -420,7 +441,7 @@ async function indexSingleFile(sourceFile, identity, cfg, provider) { const chunks = chunker.chunk(content, chunkConfig); if (chunks.length === 0) { - throw new Error( + throw new UserError( `No chunks produced from ${sourceFile}. Refusing to index an empty file — ` + 'this would silently wipe any existing indexed chunks for this topic. ' + 'Use `knowledge remove` explicitly if that is what you want.' @@ -1112,7 +1133,7 @@ function resolveQueryMode(metadata, cfg, provider) { // Store has vectors — check provider compatibility. if (!provider) { // Config has no provider but store has vectors — mismatch. - throw new Error( + throw new UserError( 'Provider/model changed since last index. Run `knowledge rebuild` to reindex.\n' + ` Store was indexed with: provider=${metaProvider}, model=${metaModel}\n` + ' Current config has no provider configured.' @@ -1127,7 +1148,7 @@ function resolveQueryMode(metadata, cfg, provider) { } // Mismatch. - throw new Error( + throw new UserError( 'Provider/model changed since last index. Run `knowledge rebuild` to reindex.\n' + ` Store: provider=${metaProvider}, model=${metaModel}, dimensions=${metaDimensions}\n` + ` Config: provider=${cfg.provider}, model=${curModel}, dimensions=${curDimensions}` @@ -1911,6 +1932,7 @@ module.exports = { deriveIdentity, resolveProviderState, withRetry, + UserError, main, cmdIndexBulk, StubProvider, @@ -1929,7 +1951,13 @@ module.exports = { if (require.main === module) { main().catch((err) => { - process.stderr.write(String(err && err.stack ? err.stack : err) + '\n'); + // UserError: validation failure — show the message alone, no stack. + // Anything else: full stack (likely a bug worth investigating). + if (err instanceof UserError) { + process.stderr.write('Error: ' + err.message + '\n'); + } else { + process.stderr.write(String(err && err.stack ? err.stack : err) + '\n'); + } process.exit(1); }); } diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index a3e751be6..e357ba90e 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -331,6 +331,27 @@ cd "$TEST_ROOT" output=$(node "$BUNDLE" index .workflows/auth-flow/planning/auth-flow/planning.md 2>&1 || true) node "$BUNDLE" index .workflows/auth-flow/planning/auth-flow/planning.md 2>/dev/null || exit_code=$? assert_eq "rejects non-indexed phase" "1" "$exit_code" +# User-visible validation error should be a clean message — no stack +# trace noise. UserError class handles this centrally. Note: for +# /planning/ paths the regex rejects first, producing the 'Cannot +# derive identity' message rather than 'not indexed'. +assert_eq "no node stack frames in error" "false" \ + "$(echo "$output" | grep -qE '^ at [A-Za-z_]+ \(' && echo true || echo false)" +assert_eq "error message surfaces" "true" \ + "$(echo "$output" | grep -qE 'Cannot derive identity|not indexed' && echo true || echo false)" +teardown_project + +# --- Test 14b: Non-.workflows path also produces clean user-facing error --- +echo "Test 14b: Non-.workflows path — clean error, no stack" +setup_project +write_stub_config +echo "hello" > "$TEST_ROOT/outside.md" +cd "$TEST_ROOT" +output=$(node "$BUNDLE" index outside.md 2>&1 || true) +assert_eq "no stack frames" "false" \ + "$(echo "$output" | grep -qE '^ at [A-Za-z_]+ \(' && echo true || echo false)" +assert_eq "error message surfaces" "true" \ + "$(echo "$output" | grep -q 'Cannot derive identity' && echo true || echo false)" teardown_project # --- Test 15: metadata.json created with empty pending array on first index --- From 4087577ab9ad5ababf64394f2474f5c82d9b1e98 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Tue, 21 Apr 2026 22:38:55 +0100 Subject: [PATCH 34/78] fix(knowledge): empty-string query rejected instead of returning wildcard MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Orama treats an empty query term as 'match everything' and returns up to --limit arbitrary chunks. Previously 'knowledge query ""' silently succeeded with 10 unrelated hits — almost always a caller bug (unsubstituted template variable, accidental empty positional) rather than an intentional 'give me anything' request. cmdQuery now rejects any positional term that is empty or whitespace- only with a UserError. Error message suggests 'knowledge status' for users who actually wanted to list what's indexed. Tests: - Test 23c: empty, whitespace-only, and valid positional terms. Asserts non-zero exit + error message surfaces for empty/ws, zero exit for valid. - Test 38b updated: replaced query "" chunk-counting calls with query "content" (term appears in the fixture). Three regression guards confirmed to fail on pre-fix code. 161/161 CLI tests, smoke, integration all green. Note: other 'exit 0 on error' cases Agent 4 flagged (query no-args, unknown command, rebuild abort, unknown --boost:) were verified to already exit 1 correctly — they were either fixed incidentally by earlier commits in this cleanup pass or were stale claims. --- .../workflow-knowledge/scripts/knowledge.cjs | 28 +++++++-------- src/knowledge/index.js | 13 +++++++ tests/scripts/test-knowledge-cli.sh | 35 +++++++++++++++++-- 3 files changed, 59 insertions(+), 17 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 41d4b6b16..9934370f2 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var Xt=Object.defineProperty;var Mo=Object.getOwnPropertyDescriptor;var No=Object.getOwnPropertyNames;var Oo=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var 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if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new $(`Unrecognized type byte: ${$t(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Hn)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===Ze){if(n==="__proto__")throw new $("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=yi;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=Ze;continue e}}return n}}readHeadByte(){return this.headByte===Xe&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=Xe}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new $(`Unrecognized array type byte: ${$t(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new $(`Max length exceeded: map 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r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=ui(this.view,this.pos);return this.pos+=8,e}readI64(){let e=Rt(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}}});function wi(t,e){return new K(e).decode(t)}function xi(t,e){return new K(e).decodeMulti(t)}var Si=v(()=>{Ft()});function ba(t){return t[Symbol.asyncIterator]!=null}async function*Aa(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function zt(t){return ba(t)?t:Aa(t)}var Ii=v(()=>{});async function bi(t,e){let n=zt(t);return new K(e).decodeAsync(n)}function Ai(t,e){let n=zt(t);return new K(e).decodeArrayStream(n)}function Ei(t,e){let n=zt(t);return new K(e).decodeStream(n)}var vi=v(()=>{Ft();Ii()});var ki={};te(ki,{DecodeError:()=>$,Decoder:()=>K,EXT_TIMESTAMP:()=>Fn,Encoder:()=>_e,ExtData:()=>re,ExtensionCodec:()=>ce,decode:()=>wi,decodeArrayStream:()=>Ai,decodeAsync:()=>bi,decodeMulti:()=>xi,decodeMultiStream:()=>Ei,decodeTimestampExtension:()=>qn,decodeTimestampToTimeSpec:()=>jn,encode:()=>fi,encodeDateToTimeSpec:()=>Vn,encodeTimeSpecToTimestamp:()=>zn,encodeTimestampExtension:()=>Wn});var Ti=v(()=>{hi();Si();vi();Ft();Ut();Yn();Ct();Bn();Kn()});var Qn=we((yh,Oi)=>{"use strict";var F=require("fs"),j=(ii(),gr(si)),{encode:Ea,decode:va}=(Ti(),gr(ki)),Zn=["id","content","work_unit","work_type","phase","topic","confidence","source_file","timestamp"];function _i(t){if(!Number.isInteger(t)||t<=0)throw new Error(`createStore: dimensions must be a positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function ka(t){let e=_i(t);return j.create({schema:e})}function Ta(t){for(let e of Zn)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function _a(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");Ta(e);let n={};for(let r of Zn)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). Omit the field for keyword-only mode, or pass a real vector.");if(e.embedding!==void 0){if(!Array.isArray(e.embedding))throw new Error("insertDocument: embedding must be an array of numbers when present");n.embedding=e.embedding}}return j.insert(t,n)}async function Da(t,e){if(!e||!e.work_unit||!e.phase||!e.topic)throw new Error("removeByIdentity: work_unit, phase, and topic are all required");return Di(t,{work_unit:{eq:e.work_unit},phase:{eq:e.phase},topic:{eq:e.topic}})}async function Di(t,e){if(!e||Object.keys(e).length===0)throw new Error("removeByFilter: where clause is required");let r=(await j.search(t,{term:"",where:e,limit:1e5})).hits.map(i=>i.id);return r.length===0?0:await j.removeMultiple(t,r)}async function Ma(t,e){if(!e||Object.keys(e).length===0)throw new Error("countByFilter: where clause is required");return(await j.search(t,{term:"",where:e,limit:1e5})).hits.length}function Vt(t){let e=t.document||{};return{id:e.id,content:e.content,work_unit:e.work_unit,work_type:e.work_type,phase:e.phase,topic:e.topic,confidence:e.confidence,source_file:e.source_file,timestamp:e.timestamp,score:t.score}}async function Na(t,{term:e="",where:n,limit:r=10}={}){let s={term:e,limit:r};return n&&Object.keys(n).length>0&&(s.where=n),(await j.search(t,s)).hits.map(Vt)}async function Oa(t,{vector:e,where:n,limit:r=10,similarity:s}={}){if(!Array.isArray(e))throw new Error("searchVector: vector (number[]) is required");let i={mode:"vector",vector:{value:e,property:"embedding"},limit:r};return typeof s=="number"&&(i.similarity=s),n&&Object.keys(n).length>0&&(i.where=n),(await j.search(t,i)).hits.map(Vt)}async function Ua(t,{term:e,vector:n,where:r,limit:s=10,textWeight:i=.4,vectorWeight:o=.6,similarity:c}={}){if(typeof e!="string")throw new Error("searchHybrid: term (string) is required");if(!Array.isArray(n))throw new Error("searchHybrid: vector (number[]) is required");let a={mode:"hybrid",term:e,vector:{value:n,property:"embedding"},hybridWeights:{text:i,vector:o},limit:s};typeof c=="number"&&(a.similarity=c),r&&Object.keys(r).length>0&&(a.where=r);let l=await j.search(t,a);if(l.hits.length===0){let u={mode:"fulltext",term:e,limit:s};return r&&Object.keys(r).length>0&&(u.where=r),(await j.search(t,u)).hits.map(Vt)}return l.hits.map(Vt)}async function Pa(t,e){if(!e)throw new Error("saveStore: storePath is required");let n=j.save(t),r={v:1,schema:t.schema,raw:n},s=Ea(r),i=e+".tmp";F.writeFileSync(i,s),F.renameSync(i,e)}async function Ra(t){if(!t)throw new Error("loadStore: storePath is required");if(!F.existsSync(t))throw new Error(`loadStore: store file not found at ${t}`);let e;try{e=F.readFileSync(t)}catch(s){throw new Error(`loadStore: failed to read ${t}: ${s.message}`)}if(e.length===0)throw new Error(`loadStore: store file is empty at ${t}`);let n;try{n=va(e)}catch(s){throw new Error(`loadStore: corrupted store file at ${t}: ${s.message}`)}if(!n||typeof n!="object"||!n.schema||!n.raw)throw new Error(`loadStore: malformed envelope at ${t}`);let r=await j.create({schema:n.schema});return j.load(r,n.raw),r}var La=3e4,Ca=50,$a=3e4;function Ba(t){try{let e=F.openSync(t,"wx");return F.writeSync(e,String(process.pid)),F.closeSync(e),!0}catch(e){if(e.code!=="EEXIST")throw e;return!1}}function Fa(t){return new Promise(e=>setTimeout(e,t))}async function Mi(t){let e=Date.now()+$a;for(;;){if(Ba(t))return;try{let n=F.statSync(t);if(Date.now()-n.mtimeMs>La){try{F.unlinkSync(t)}catch{}continue}}catch{continue}if(Date.now()>=e)throw new Error(`knowledge store: timed out waiting for lock at ${t}. If no other process is running, delete the file manually.`);await Fa(Ca)}}function Ni(t){try{F.unlinkSync(t)}catch{}}async function za(t,e){await Mi(t);try{return await e()}finally{Ni(t)}}var Va=["provider","model","dimensions","last_indexed","pending","pending_removals"];function Wa(t,e){if(!t)throw new Error("writeMetadata: metadataPath is required");if(e==null||typeof e!="object")throw new Error("writeMetadata: data must be an object");let n={provider:e.provider===void 0?null:e.provider,model:e.model===void 0?null:e.model,dimensions:e.dimensions===void 0?null:e.dimensions,last_indexed:e.last_indexed===void 0?null:e.last_indexed,pending:Array.isArray(e.pending)?e.pending:[],pending_removals:Array.isArray(e.pending_removals)?e.pending_removals:[]},r=t+".tmp";F.writeFileSync(r,JSON.stringify(n,null,2)+` `,"utf8"),F.renameSync(r,t)}function ja(t){if(!t)throw new Error("readMetadata: metadataPath is required");if(!F.existsSync(t))throw new Error(`readMetadata: metadata file not found at ${t}`);let e;try{e=F.readFileSync(t,"utf8")}catch(r){throw new Error(`readMetadata: failed to read ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`readMetadata: invalid JSON at ${t}: ${r.message}`)}return n}Oi.exports={SCHEMA_FIELDS:Zn,METADATA_FIELDS:Va,buildSchema:_i,createStore:ka,insertDocument:_a,removeByIdentity:Da,removeByFilter:Di,countByFilter:Ma,searchFulltext:Na,searchVector:Oa,searchHybrid:Ua,saveStore:Pa,loadStore:Ra,acquireLock:Mi,releaseLock:Ni,withLock:za,writeMetadata:Wa,readMetadata:ja}});var Ci=we((wh,Li)=>{"use strict";var qa=/^\s*(```+|~~~+)/,Ui=/^---\s*$/;function Ka(t,e){if(typeof t!="string")throw new TypeError("chunk: markdown must be a string");if(!e||typeof e!="object")throw new TypeError("chunk: config must be an object");let{primary_level:n=2,fallback_level:r=3,max_lines:s=200,keep_whole_below:i=50,special_sections:o={},strip_frontmatter:c=!0,skip_empty_sections:a=!0}=e,l=t.replace(/\r\n/g,` `).replace(/\r/g,` `),u=c?Ga(l):l;if(u.trim()==="")return[];let d=u.split(` @@ -123,7 +123,7 @@ Stub mode: no embedding provider configured. The knowledge base will run in keyw `)}ho.exports={cmdSetup:al,requireTTY:eo,createPrompter:to,ask:jt,askYesNo:De,askSecret:no,buildSystemConfigOpenAI:ro,buildSystemConfigStub:so,buildProjectConfigEmpty:io,detectSystemConfig:oo,detectProjectInit:co,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:lo,runSystemConfigStep:ao,runProjectInitStep:uo,runInitialIndexStep:fo,KEYWORD_ONLY_DIMENSIONS:Qi,OPENAI_DEFAULT_MODEL:Xi,OPENAI_DEFAULT_DIMENSIONS:Zi}});var E=require("fs"),z=require("path"),k=Qn(),wo=Ci(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Wt(),me=or(),xo=po(),dr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,lr=10,fr=1536,mo=!1,P=class extends Error{constructor(e){super(e),this.name="UserError"}};function So(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,lr=10,fr=1536,mo=!1,O=class extends Error{constructor(e){super(e),this.name="UserError"}};function So(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -148,17 +148,17 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results - --dry-run Preview without making changes`;function Z(){return z.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return z.join(Z(),"store.msp")}function G(){return z.join(Z(),"metadata.json")}function se(){return z.join(Z(),".lock")}function hl(t){return new Promise(e=>setTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;isetTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;ipr(s,o,n,r),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await vo(n,r,fl)}async function pr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new P(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=wo.chunk(a,o);if(l.length===0)throw new P(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=Z(),d=Q(),f=G(),h=se();E.existsSync(u)||E.mkdirSync(u,{recursive:!0});let m,S,g=E.existsSync(d),x=E.existsSync(f);g&&(m=await k.loadStore(d)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=bo(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||fr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let ee=String(M+1).padStart(3,"0"),Y={id:`${e.workUnit}-${e.phase}-${e.topic}-${ee}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(Y.embedding=w[M]),Y});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(d):E.existsSync(d)&&(m=await k.loadStore(d)),p==="full"&&E.existsSync(f)){let M=k.readMetadata(f),ee=y.dimensions();if(M.provider&&M.dimensions!==ee)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,d);let _=E.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function et(t){let{execFileSync:e}=require("child_process");return e("node",[dl,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function tt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} +`),await vo(n,r,fl)}async function pr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new O(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=wo.chunk(a,o);if(l.length===0)throw new O(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=Z(),d=Q(),f=G(),h=se();E.existsSync(u)||E.mkdirSync(u,{recursive:!0});let m,S,g=E.existsSync(d),x=E.existsSync(f);g&&(m=await k.loadStore(d)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=bo(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||fr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let ee=String(M+1).padStart(3,"0"),Y={id:`${e.workUnit}-${e.phase}-${e.topic}-${ee}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(Y.embedding=w[M]),Y});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(d):E.existsSync(d)&&(m=await k.loadStore(d)),p==="full"&&E.existsSync(f)){let M=k.readMetadata(f),ee=y.dimensions();if(M.provider&&M.dimensions!==ee)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,d);let _=E.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function et(t){let{execFileSync:e}=require("child_process");return e("node",[dl,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function tt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} `)}async function Ao(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function mr(){let t=[],e;try{let n=et(["list"]);e=JSON.parse(n)}catch(n){return tt("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of dr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=et(["resolve",`${r}.${s}.${o}`]).trim();l&&E.existsSync(z.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){tt(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Yt(t,e,n){let r=mr(),s=Z(),i=Q();E.existsSync(s)||E.mkdirSync(s,{recursive:!0});let o=null;E.existsSync(i)&&(o=await k.loadStore(i));let c=0,a=0,l=0;for(let u of r){if(o&&await Ao(o,u.workUnit,u.phase,u.topic)){l++;continue}try{let d={workUnit:u.workUnit,phase:u.phase,topic:u.topic},f=await rt(()=>pr(u.file,d,e,n),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexing ${u.file}... ${f} chunks `),c++,a+=f,E.existsSync(i)&&(o=await k.loadStore(i))}catch(d){await Eo(u.file,d.message),process.stderr.write(`Failed to index ${u.file} after 3 attempts: ${d.message}. Added to pending queue. `),d.stack&&process.stderr.write(d.stack+` @@ -169,12 +169,12 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `),await yo(r);continue}try{await _o({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. `),await yo(r)}catch(s){try{await ko({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function _o(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var gl={high:4,medium:3,"low-medium":2,low:1};function yl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function wl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var ar={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},xl=.1;function Sl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=xl);let c=gl[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Il(t){let e=[];for(let n of t)(!n.field||!ar[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(ar).join(", ")} `),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value -`),process.exit(1)),e.push({field:ar[n.field],value:n.value});return e}function bl(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new P(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. +`),process.exit(1)),e.push({field:ar[n.field],value:n.value});return e}function bl(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new O(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} - Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new P(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. + Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new O(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Al(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--work-unit ...] [--work-type ...] [--phase ...] [--topic ...] [--boost: ]... [--limit N] -`),process.exit(1));let s=t,i=e.limit||10,o=Q(),c=G();if(!E.existsSync(o)){process.stdout.write(`[0 results] +`),process.exit(1));for(let I of t)if(typeof I!="string"||I.trim()==="")throw new O("Empty search term. `knowledge query` requires at least one non-empty positional term. If you intended to list everything indexed, use `knowledge status` instead.");let s=t,i=e.limit||10,o=Q(),c=G();if(!E.existsSync(o)){process.stdout.write(`[0 results] `);return}let a=await k.loadStore(o),l="keyword-only",u=null,d=null;E.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=k.readMetadata(c),h=bl(f,n,r);l=h.mode,u=h.provider,l==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":l==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let m={};if(e.phase){let I=e.phase.split(",").map(T=>T.trim());m.phase=I.length===1?{eq:I[0]}:{in:I}}if(e.workType){let I=e.workType.split(",").map(T=>T.trim());m.work_type=I.length===1?{eq:I[0]}:{in:I}}if(e.workUnit){let I=e.workUnit.split(",").map(T=>T.trim());m.work_unit=I.length===1?{eq:I[0]}:{in:I}}if(e.topic){let I=e.topic.split(",").map(T=>T.trim());m.topic=I.length===1?{eq:I[0]}:{in:I}}let S=n.similarity_threshold||.8,g=Object.keys(m).length>0?m:void 0,x=new Map;for(let I of s){let T;if(l==="full"&&u){let D=await rt(()=>u.embed(I),{maxAttempts:3,backoff:nt});T=await k.searchHybrid(a,{term:I,vector:D,where:g,limit:i*2,similarity:S})}else T=await k.searchFulltext(a,{term:I,where:g,limit:i*2});for(let D of T){let _=x.get(D.id);(!_||D.score>_.score)&&x.set(D.id,D)}}let p=Il(e.boosts),y=Sl(Array.from(x.values()),p);y.length>i&&(y=y.slice(0,i));let w=[];d&&w.push(d),w.push(`[${y.length} results]`);for(let I of y){w.push("");let T=wl(I.timestamp);w.push(`[${I.phase} | ${I.work_unit}/${I.topic} | ${I.confidence} | ${T}]`),w.push(I.content),w.push(`Source: ${I.source_file}`)}process.stdout.write(w.join(` `)+` `)}async function El(){let t=Z(),e=z.join(t,"config.json"),n=Q();if(!E.existsSync(t)){process.stdout.write(`not-ready @@ -217,6 +217,6 @@ Rename them back manually to recover. Rollback error: ${f.message} `),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await ml(i,o,c,a);break;case"query":await Al(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await vl();break;case"remove":await _l(i,o,c,a);break;case"compact":await Nl(i,o,c,a);break;case"rebuild":await kl(i,o,c,a);break;case"setup":await xo.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". ${go} -`),process.exit(1)}}module.exports={parseArgs:So,buildOptions:Io,deriveIdentity:hr,resolveProviderState:bo,withRetry:rt,UserError:P,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:wo,config:me,setup:xo,knowledgeDir:Z,storePath:Q,metadataPath:G,lockFilePath:se,INDEXED_PHASES:dr,KEYWORD_ONLY_DIMENSIONS:fr};require.main===module&&Do().catch(t=>{t instanceof P?process.stderr.write("Error: "+t.message+` +`),process.exit(1)}}module.exports={parseArgs:So,buildOptions:Io,deriveIdentity:hr,resolveProviderState:bo,withRetry:rt,UserError:O,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:wo,config:me,setup:xo,knowledgeDir:Z,storePath:Q,metadataPath:G,lockFilePath:se,INDEXED_PHASES:dr,KEYWORD_ONLY_DIMENSIONS:fr};require.main===module&&Do().catch(t=>{t instanceof O?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 014cadab6..62740e174 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1161,6 +1161,19 @@ async function cmdQuery(args, options, cfg, provider) { process.exit(1); } + // Reject empty/whitespace-only terms. Orama treats an empty term as + // "match everything" and returns up to `limit` arbitrary chunks — almost + // certainly a caller mistake (fat-finger, variable template that wasn't + // substituted) rather than an intentional "give me anything" request. + for (const t of args) { + if (typeof t !== 'string' || t.trim() === '') { + throw new UserError( + 'Empty search term. `knowledge query` requires at least one non-empty positional term. ' + + 'If you intended to list everything indexed, use `knowledge status` instead.' + ); + } + } + const searchTerms = args; // batch: multiple positional args const limit = options.limit || 10; const sp = storePath(); diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index e357ba90e..6827b3d21 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -503,6 +503,32 @@ output=$(run_kb index .workflows/auth-flow/discussion/auth-flow.md 2>&1) assert_eq "shows upgrade note on index" "true" "$(echo "$output" | grep -q 'Run .knowledge rebuild.' && echo true || echo false)" teardown_project +# --- Test 23c: Empty-string query rejected (no "match everything") --- +# Orama treats empty term as wildcard and returns up to `limit` chunks. +# That's almost always a caller bug (unsubstituted template variable, +# accidental empty positional) — surface it as an error rather than +# returning arbitrary hits. +echo "Test 23c: Empty query term rejected" +setup_project +create_work_unit "auth-flow" "feature" "Auth" +write_stub_config +create_discussion_file "auth-flow" "auth-flow" +run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 +exit_code=0 +output=$(run_kb query "" 2>&1) || exit_code=$? +assert_eq "empty query exits non-zero" "true" "$([ "$exit_code" -ne 0 ] && echo true || echo false)" +assert_eq "error message surfaces" "true" \ + "$(echo "$output" | grep -q 'Empty search term' && echo true || echo false)" +# Whitespace-only term also rejected. +exit_code=0 +output=$(run_kb query " " 2>&1) || exit_code=$? +assert_eq "whitespace-only query exits non-zero" "true" "$([ "$exit_code" -ne 0 ] && echo true || echo false)" +# Any non-empty term still works. +exit_code=0 +run_kb query "content" >/dev/null 2>&1 || exit_code=$? +assert_eq "valid query still succeeds" "0" "$exit_code" +teardown_project + # --- Test 24: Query on empty store returns [0 results] --- echo "Test 24: Empty store" setup_project @@ -860,18 +886,21 @@ create_work_unit "preview-wu" "feature" "Preview" write_stub_config create_discussion_file "preview-wu" "preview-wu" run_kb index .workflows/preview-wu/discussion/preview-wu.md >/dev/null 2>&1 +# Use a term that appears in the fixture ('content') to count chunks — +# empty-string queries are now a UserError (intentional, to catch +# unsubstituted template variables). # grep -c exits 1 on zero matches; absorb under set -eo pipefail. -before=$(run_kb query "" --limit 100 2>&1 | grep -c '^\[discussion' || true) +before=$(run_kb query "content" --limit 100 2>&1 | grep -c '^\[discussion' || true) dry_output=$(run_kb remove --work-unit preview-wu --dry-run 2>&1) assert_eq "dry-run says 'Would remove'" "true" \ "$(echo "$dry_output" | grep -q 'Would remove' && echo true || echo false)" assert_eq "dry-run does NOT say 'Removed'" "false" \ "$(echo "$dry_output" | grep -qE '^Removed' && echo true || echo false)" -after=$(run_kb query "" --limit 100 2>&1 | grep -c '^\[discussion' || true) +after=$(run_kb query "content" --limit 100 2>&1 | grep -c '^\[discussion' || true) assert_eq "chunk count unchanged after dry-run" "$before" "$after" # Sanity: a real remove afterwards DOES delete. run_kb remove --work-unit preview-wu >/dev/null 2>&1 -after_real=$(run_kb query "" --limit 100 2>&1 | grep -c '^\[discussion' || true) +after_real=$(run_kb query "content" --limit 100 2>&1 | grep -c '^\[discussion' || true) assert_eq "real remove actually deletes" "0" "$after_real" teardown_project From e1439962cf9c3a8aaf56c1e508906117798046bc Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Wed, 22 Apr 2026 19:41:53 +0100 Subject: [PATCH 35/78] fix(knowledge): remove validates work unit exists in project registry MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit knowledge remove --work-unit silently succeeded with 'Removed 0 chunks' and exit 0 — a fat-finger was indistinguishable from a legitimate no-op. Skills that pass a template-substituted name had no way to detect that the variable resolved wrong. cmdRemove now performs a project-registry lookup (manifest project get ) at entry, before the store-existence check. Registry miss (manifest exits 2) → UserError with the wu name and a hint to run knowledge status. Any other manifest error is rethrown with stack. The check lives in cmdRemove only, NOT performRemoval. The pending- removal queue's drain path calls performRemoval directly for entries whose wu may have been deleted from the registry after the failure was queued (e.g. absorption). Those still need to clean up chunks that remain in the store. Verified every skill flow that calls knowledge remove (cancel, supersede, promote, absorb-into-epic, epic-topic-cancel) invokes it while the wu is still in the registry — so no caller breaks. Tests: Test 41 flipped from 'reports 0 removed' for nonexistent wu to 'exits non-zero + error names wu + mentions project manifest'. Test 44 updated to create the WU first before asserting empty-store no-op. Three guard assertions confirmed to fail on pre-fix code. 165/165 CLI, smoke, integration all green. --- .../workflow-knowledge/scripts/knowledge.cjs | 44 +++++++++---------- src/knowledge/index.js | 23 ++++++++++ tests/scripts/test-knowledge-cli.sh | 27 +++++++++--- 3 files changed, 67 insertions(+), 27 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 9934370f2..6b41899ed 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var Xt=Object.defineProperty;var Mo=Object.getOwnPropertyDescriptor;var No=Object.getOwnPropertyNames;var Oo=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var we=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),te=(t,e)=>{for(var n in e)Xt(t,n,{get:e[n],enumerable:!0})},Uo=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of No(e))!Oo.call(t,s)&&s!==n&&Xt(t,s,{get:()=>e[s],enumerable:!(r=Mo(e,s))||r.enumerable});return t};var gr=t=>Uo(Xt({},"__esModule",{value:!0}),t);function xr(t){return t!==void 0&&Ne.includes(t)?yr[t]:void 0}var 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fi(t,e){return new _e(e).encodeSharedRef(t)}var hi=v(()=>{Yn()});function $t(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var pi=v(()=>{});var ya,wa,Bt,mi=v(()=>{Ot();ya=16,wa=16,Bt=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=ya,n=wa){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=$n(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Hn,Ze,yi,xa,Jn,Xe,Xn,Sa,gi,Ia,K,Ft=v(()=>{pi();Ct();Lt();Ot();Gn();mi();Ut();Hn="array",Ze="map_key",yi="map_value",xa=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new $("The type of key must be string or number but "+typeof t)},Jn=class{stack=[];stackHeadPosition=-1;get length(){return 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s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new $(`Unrecognized type byte: ${$t(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Hn)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===Ze){if(n==="__proto__")throw new $("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=yi;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=Ze;continue e}}return n}}readHeadByte(){return this.headByte===Xe&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=Xe}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new $(`Unrecognized array type byte: ${$t(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new $(`Max length exceeded: map 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fi(t,e){return new _e(e).encodeSharedRef(t)}var hi=v(()=>{Yn()});function $t(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var pi=v(()=>{});var ya,wa,Bt,mi=v(()=>{Ut();ya=16,wa=16,Bt=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=ya,n=wa){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=$n(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Hn,Qe,yi,xa,Jn,Ze,Xn,Sa,gi,Ia,K,Ft=v(()=>{pi();Ct();Lt();Ut();Gn();mi();Ot();Hn="array",Qe="map_key",yi="map_value",xa=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new $("The type of key must be string or number but "+typeof t)},Jn=class{stack=[];stackHeadPosition=-1;get length(){return 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this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${$t(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new $(`Unrecognized type byte: ${$t(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Hn)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===Qe){if(n==="__proto__")throw new $("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=yi;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=Qe;continue e}}return n}}readHeadByte(){return this.headByte===Ze&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=Ze}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new $(`Unrecognized array type byte: ${$t(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new $(`Max length exceeded: map 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r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=ui(this.view,this.pos);return this.pos+=8,e}readI64(){let e=Rt(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}}});function wi(t,e){return new K(e).decode(t)}function xi(t,e){return new K(e).decodeMulti(t)}var Si=v(()=>{Ft()});function ba(t){return t[Symbol.asyncIterator]!=null}async function*Aa(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function zt(t){return ba(t)?t:Aa(t)}var Ii=v(()=>{});async function bi(t,e){let n=zt(t);return new K(e).decodeAsync(n)}function Ai(t,e){let n=zt(t);return new K(e).decodeArrayStream(n)}function Ei(t,e){let n=zt(t);return new K(e).decodeStream(n)}var vi=v(()=>{Ft();Ii()});var ki={};te(ki,{DecodeError:()=>$,Decoder:()=>K,EXT_TIMESTAMP:()=>Fn,Encoder:()=>_e,ExtData:()=>re,ExtensionCodec:()=>ce,decode:()=>wi,decodeArrayStream:()=>Ai,decodeAsync:()=>bi,decodeMulti:()=>xi,decodeMultiStream:()=>Ei,decodeTimestampExtension:()=>qn,decodeTimestampToTimeSpec:()=>jn,encode:()=>fi,encodeDateToTimeSpec:()=>Vn,encodeTimeSpecToTimestamp:()=>zn,encodeTimestampExtension:()=>Wn});var Ti=v(()=>{hi();Si();vi();Ft();Ot();Yn();Ct();Bn();Kn()});var Qn=we((yh,Ui)=>{"use strict";var F=require("fs"),j=(ii(),gr(si)),{encode:Ea,decode:va}=(Ti(),gr(ki)),Zn=["id","content","work_unit","work_type","phase","topic","confidence","source_file","timestamp"];function _i(t){if(!Number.isInteger(t)||t<=0)throw new Error(`createStore: dimensions must be a positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function ka(t){let e=_i(t);return j.create({schema:e})}function Ta(t){for(let e of Zn)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function _a(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");Ta(e);let n={};for(let r of Zn)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). Omit the field for keyword-only mode, or pass a real vector.");if(e.embedding!==void 0){if(!Array.isArray(e.embedding))throw new Error("insertDocument: embedding must be an array of numbers when present");n.embedding=e.embedding}}return j.insert(t,n)}async function Da(t,e){if(!e||!e.work_unit||!e.phase||!e.topic)throw new Error("removeByIdentity: work_unit, phase, and topic are all required");return Di(t,{work_unit:{eq:e.work_unit},phase:{eq:e.phase},topic:{eq:e.topic}})}async function Di(t,e){if(!e||Object.keys(e).length===0)throw new Error("removeByFilter: where clause is required");let r=(await j.search(t,{term:"",where:e,limit:1e5})).hits.map(i=>i.id);return r.length===0?0:await j.removeMultiple(t,r)}async function Ma(t,e){if(!e||Object.keys(e).length===0)throw new Error("countByFilter: where clause is required");return(await j.search(t,{term:"",where:e,limit:1e5})).hits.length}function Vt(t){let e=t.document||{};return{id:e.id,content:e.content,work_unit:e.work_unit,work_type:e.work_type,phase:e.phase,topic:e.topic,confidence:e.confidence,source_file:e.source_file,timestamp:e.timestamp,score:t.score}}async function Na(t,{term:e="",where:n,limit:r=10}={}){let s={term:e,limit:r};return n&&Object.keys(n).length>0&&(s.where=n),(await j.search(t,s)).hits.map(Vt)}async function Ua(t,{vector:e,where:n,limit:r=10,similarity:s}={}){if(!Array.isArray(e))throw new Error("searchVector: vector (number[]) is required");let i={mode:"vector",vector:{value:e,property:"embedding"},limit:r};return typeof s=="number"&&(i.similarity=s),n&&Object.keys(n).length>0&&(i.where=n),(await j.search(t,i)).hits.map(Vt)}async function Oa(t,{term:e,vector:n,where:r,limit:s=10,textWeight:i=.4,vectorWeight:o=.6,similarity:c}={}){if(typeof e!="string")throw new Error("searchHybrid: term (string) is required");if(!Array.isArray(n))throw new Error("searchHybrid: vector (number[]) is required");let a={mode:"hybrid",term:e,vector:{value:n,property:"embedding"},hybridWeights:{text:i,vector:o},limit:s};typeof c=="number"&&(a.similarity=c),r&&Object.keys(r).length>0&&(a.where=r);let l=await j.search(t,a);if(l.hits.length===0){let u={mode:"fulltext",term:e,limit:s};return r&&Object.keys(r).length>0&&(u.where=r),(await j.search(t,u)).hits.map(Vt)}return l.hits.map(Vt)}async function Pa(t,e){if(!e)throw new Error("saveStore: storePath is required");let n=j.save(t),r={v:1,schema:t.schema,raw:n},s=Ea(r),i=e+".tmp";F.writeFileSync(i,s),F.renameSync(i,e)}async function Ra(t){if(!t)throw new Error("loadStore: storePath is required");if(!F.existsSync(t))throw new Error(`loadStore: store file not found at ${t}`);let e;try{e=F.readFileSync(t)}catch(s){throw new Error(`loadStore: failed to read ${t}: ${s.message}`)}if(e.length===0)throw new Error(`loadStore: store file is empty at ${t}`);let n;try{n=va(e)}catch(s){throw new Error(`loadStore: corrupted store file at ${t}: ${s.message}`)}if(!n||typeof n!="object"||!n.schema||!n.raw)throw new Error(`loadStore: malformed envelope at ${t}`);let r=await j.create({schema:n.schema});return j.load(r,n.raw),r}var La=3e4,Ca=50,$a=3e4;function Ba(t){try{let e=F.openSync(t,"wx");return F.writeSync(e,String(process.pid)),F.closeSync(e),!0}catch(e){if(e.code!=="EEXIST")throw e;return!1}}function Fa(t){return new Promise(e=>setTimeout(e,t))}async function Mi(t){let e=Date.now()+$a;for(;;){if(Ba(t))return;try{let n=F.statSync(t);if(Date.now()-n.mtimeMs>La){try{F.unlinkSync(t)}catch{}continue}}catch{continue}if(Date.now()>=e)throw new Error(`knowledge store: timed out waiting for lock at ${t}. 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u)h.startLine>d&&(i.push({action:"regular",startLine:d,endLine:h.startLine-1,heading:f?o.heading:"",headingLine:f?o.headingLine:""}),f=!1),i.push({action:h.action,startLine:h.startLine,endLine:h.endLine,heading:h.heading,headingLine:h.headingLine}),d=h.endLine+1;d<=o.endLine&&i.push({action:"regular",startLine:d,endLine:o.endLine,heading:"",headingLine:""})}return i}function Ja(t,e){let n=t.text.split(` @@ -23,8 +23,8 @@ Read more at https://docs.orama.com/docs/orama-js/plugins/plugin-secure-proxy#pl `));a.trim()!==""&&i.push({heading:t.heading,headingLine:t.headingLine,text:a})}for(let c=0;c{"use strict";var $i="stub";function Xa(t){let e=2166136261;for(let n=0;n>>0}function Za(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var er=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must 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this._fetch(r);if(!Array.isArray(s.data)||s.data.length!==e.length)throw new Error(`OpenAI embedBatch response length mismatch: requested ${e.length}, received ${s.data?s.data.length:0}`);return[...s.data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var C=require("fs"),Qe=require("path"),Wi=require("os"),{StubProvider:Qa}=tr(),{OpenAIProvider:el}=Wt(),ji={similarity_threshold:.8,decay_months:6},rr=["stub","openai"],qi={openai:"OPENAI_API_KEY"};function Ki(){return Qe.join(Wi.homedir(),".config","workflows","config.json")}function Gi(t){return Qe.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Yi(){return Qe.join(Wi.homedir(),".config","workflows","credentials.json")}function sr(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function ir(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function tl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=ir(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=Qe.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` -`)}finally{C.closeSync(a)}C.chmodSync(c,384),C.renameSync(c,t);try{C.chmodSync(t,384)}catch{}}function Hi(t,e){if(!t)return null;let n=qi[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Yi(),s;try{s=ir(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function nl(t){let e=t&&t.systemPath||Ki(),n=t&&t.projectPath||Gi(),r=sr(e),s=sr(n),i=Object.assign({},ji);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=Hi(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function rl(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Qa(n!=null?{dimensions:n}:void 0)}if(!rr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${rr.join(", ")}`);return t._api_key&&e==="openai"?new el({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function sl(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=Qe.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` +`).trim()===""}Li.exports={chunk:Ka}});var tr=we((xh,Bi)=>{"use strict";var $i="stub";function Xa(t){let e=2166136261;for(let n=0;n>>0}function Za(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var er=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=Xa(n)||1,s=Za(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Fi="text-embedding-3-small",zi="https://api.openai.com/v1/embeddings",nr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Fi,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions}),s=await this._fetch(r);if(!Array.isArray(s.data)||s.data.length!==e.length)throw new Error(`OpenAI embedBatch response length mismatch: requested ${e.length}, received ${s.data?s.data.length:0}`);return[...s.data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var C=require("fs"),et=require("path"),Wi=require("os"),{StubProvider:Qa}=tr(),{OpenAIProvider:el}=Wt(),ji={similarity_threshold:.8,decay_months:6},rr=["stub","openai"],qi={openai:"OPENAI_API_KEY"};function Ki(){return et.join(Wi.homedir(),".config","workflows","config.json")}function Gi(t){return et.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Yi(){return et.join(Wi.homedir(),".config","workflows","credentials.json")}function sr(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function ir(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function tl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=ir(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=et.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{C.closeSync(a)}C.chmodSync(c,384),C.renameSync(c,t);try{C.chmodSync(t,384)}catch{}}function Hi(t,e){if(!t)return null;let n=qi[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Yi(),s;try{s=ir(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function nl(t){let e=t&&t.systemPath||Ki(),n=t&&t.projectPath||Gi(),r=sr(e),s=sr(n),i=Object.assign({},ji);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=Hi(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function rl(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Qa(n!=null?{dimensions:n}:void 0)}if(!rr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${rr.join(", ")}`);return t._api_key&&e==="openai"?new el({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function sl(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=et.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` `,"utf8"),C.renameSync(r,t)}Ji.exports={DEFAULTS:ji,AVAILABLE_PROVIDERS:rr,PROVIDER_ENV_VARS:qi,systemConfigPath:Ki,projectConfigPath:Gi,credentialsPath:Yi,readConfigFile:sr,loadConfig:nl,loadCredentials:ir,writeCredentials:tl,resolveApiKey:Hi,resolveProvider:rl,writeConfigFile:sl}});var po=we((bh,ho)=>{"use strict";var le=require("fs"),ue=require("path"),il=require("readline"),B=or(),cr=Qn(),{OpenAIProvider:ol}=Wt(),Xi="text-embedding-3-small",Zi=1536,Qi=1536;function eo(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function to(){let t=il.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. @@ -123,7 +123,7 @@ Stub mode: no embedding provider configured. The knowledge base will run in keyw `)}ho.exports={cmdSetup:al,requireTTY:eo,createPrompter:to,ask:jt,askYesNo:De,askSecret:no,buildSystemConfigOpenAI:ro,buildSystemConfigStub:so,buildProjectConfigEmpty:io,detectSystemConfig:oo,detectProjectInit:co,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:lo,runSystemConfigStep:ao,runProjectInitStep:uo,runInitialIndexStep:fo,KEYWORD_ONLY_DIMENSIONS:Qi,OPENAI_DEFAULT_MODEL:Xi,OPENAI_DEFAULT_DIMENSIONS:Zi}});var E=require("fs"),z=require("path"),k=Qn(),wo=Ci(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Wt(),me=or(),xo=po(),dr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,lr=10,fr=1536,mo=!1,O=class extends Error{constructor(e){super(e),this.name="UserError"}};function So(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,lr=10,fr=1536,mo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function So(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -148,18 +148,18 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results - --dry-run Preview without making changes`;function Z(){return z.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return z.join(Z(),"store.msp")}function G(){return z.join(Z(),"metadata.json")}function se(){return z.join(Z(),".lock")}function hl(t){return new Promise(e=>setTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;isetTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;ipr(s,o,n,r),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await vo(n,r,fl)}async function pr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new O(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=wo.chunk(a,o);if(l.length===0)throw new O(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=Z(),d=Q(),f=G(),h=se();E.existsSync(u)||E.mkdirSync(u,{recursive:!0});let m,S,g=E.existsSync(d),x=E.existsSync(f);g&&(m=await k.loadStore(d)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=bo(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||fr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let ee=String(M+1).padStart(3,"0"),Y={id:`${e.workUnit}-${e.phase}-${e.topic}-${ee}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(Y.embedding=w[M]),Y});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(d):E.existsSync(d)&&(m=await k.loadStore(d)),p==="full"&&E.existsSync(f)){let M=k.readMetadata(f),ee=y.dimensions();if(M.provider&&M.dimensions!==ee)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,d);let _=E.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function et(t){let{execFileSync:e}=require("child_process");return e("node",[dl,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function tt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} -`)}async function Ao(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function mr(){let t=[],e;try{let n=et(["list"]);e=JSON.parse(n)}catch(n){return tt("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of dr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=et(["resolve",`${r}.${s}.${o}`]).trim();l&&E.existsSync(z.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){tt(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Yt(t,e,n){let r=mr(),s=Z(),i=Q();E.existsSync(s)||E.mkdirSync(s,{recursive:!0});let o=null;E.existsSync(i)&&(o=await k.loadStore(i));let c=0,a=0,l=0;for(let u of r){if(o&&await Ao(o,u.workUnit,u.phase,u.topic)){l++;continue}try{let d={workUnit:u.workUnit,phase:u.phase,topic:u.topic},f=await rt(()=>pr(u.file,d,e,n),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexing ${u.file}... ${f} chunks +`),await vo(n,r,fl)}async function pr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=wo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=Z(),d=Q(),f=G(),h=se();E.existsSync(u)||E.mkdirSync(u,{recursive:!0});let m,S,g=E.existsSync(d),x=E.existsSync(f);g&&(m=await k.loadStore(d)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=bo(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||fr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let ee=String(M+1).padStart(3,"0"),Y={id:`${e.workUnit}-${e.phase}-${e.topic}-${ee}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(Y.embedding=w[M]),Y});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(d):E.existsSync(d)&&(m=await k.loadStore(d)),p==="full"&&E.existsSync(f)){let M=k.readMetadata(f),ee=y.dimensions();if(M.provider&&M.dimensions!==ee)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,d);let _=E.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function Me(t){let{execFileSync:e}=require("child_process");return e("node",[dl,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function tt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} +`)}async function Ao(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function mr(){let t=[],e;try{let n=Me(["list"]);e=JSON.parse(n)}catch(n){return tt("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of dr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Me(["resolve",`${r}.${s}.${o}`]).trim();l&&E.existsSync(z.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){tt(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Yt(t,e,n){let r=mr(),s=Z(),i=Q();E.existsSync(s)||E.mkdirSync(s,{recursive:!0});let o=null;E.existsSync(i)&&(o=await k.loadStore(i));let c=0,a=0,l=0;for(let u of r){if(o&&await Ao(o,u.workUnit,u.phase,u.topic)){l++;continue}try{let d={workUnit:u.workUnit,phase:u.phase,topic:u.topic},f=await rt(()=>pr(u.file,d,e,n),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexing ${u.file}... ${f} chunks `),c++,a+=f,E.existsSync(i)&&(o=await k.loadStore(i))}catch(d){await Eo(u.file,d.message),process.stderr.write(`Failed to index ${u.file} after 3 attempts: ${d.message}. Added to pending queue. `),d.stack&&process.stderr.write(d.stack+` `)}}await vo(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${l} already indexed. @@ -169,12 +169,12 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `),await yo(r);continue}try{await _o({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. `),await yo(r)}catch(s){try{await ko({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function _o(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var gl={high:4,medium:3,"low-medium":2,low:1};function yl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function wl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var ar={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},xl=.1;function Sl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=xl);let c=gl[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Il(t){let e=[];for(let n of t)(!n.field||!ar[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(ar).join(", ")} `),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value -`),process.exit(1)),e.push({field:ar[n.field],value:n.value});return e}function bl(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new O(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. +`),process.exit(1)),e.push({field:ar[n.field],value:n.value});return e}function bl(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new U(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} - Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new O(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. + Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new U(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Al(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--work-unit ...] [--work-type ...] [--phase ...] [--topic ...] [--boost: ]... [--limit N] -`),process.exit(1));for(let I of t)if(typeof I!="string"||I.trim()==="")throw new O("Empty search term. `knowledge query` requires at least one non-empty positional term. If you intended to list everything indexed, use `knowledge status` instead.");let s=t,i=e.limit||10,o=Q(),c=G();if(!E.existsSync(o)){process.stdout.write(`[0 results] +`),process.exit(1));for(let I of t)if(typeof I!="string"||I.trim()==="")throw new U("Empty search term. `knowledge query` requires at least one non-empty positional term. If you intended to list everything indexed, use `knowledge status` instead.");let s=t,i=e.limit||10,o=Q(),c=G();if(!E.existsSync(o)){process.stdout.write(`[0 results] `);return}let a=await k.loadStore(o),l="keyword-only",u=null,d=null;E.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=k.readMetadata(c),h=bl(f,n,r);l=h.mode,u=h.provider,l==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":l==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let m={};if(e.phase){let I=e.phase.split(",").map(T=>T.trim());m.phase=I.length===1?{eq:I[0]}:{in:I}}if(e.workType){let I=e.workType.split(",").map(T=>T.trim());m.work_type=I.length===1?{eq:I[0]}:{in:I}}if(e.workUnit){let I=e.workUnit.split(",").map(T=>T.trim());m.work_unit=I.length===1?{eq:I[0]}:{in:I}}if(e.topic){let I=e.topic.split(",").map(T=>T.trim());m.topic=I.length===1?{eq:I[0]}:{in:I}}let S=n.similarity_threshold||.8,g=Object.keys(m).length>0?m:void 0,x=new Map;for(let I of s){let T;if(l==="full"&&u){let D=await rt(()=>u.embed(I),{maxAttempts:3,backoff:nt});T=await k.searchHybrid(a,{term:I,vector:D,where:g,limit:i*2,similarity:S})}else T=await k.searchFulltext(a,{term:I,where:g,limit:i*2});for(let D of T){let _=x.get(D.id);(!_||D.score>_.score)&&x.set(D.id,D)}}let p=Il(e.boosts),y=Sl(Array.from(x.values()),p);y.length>i&&(y=y.slice(0,i));let w=[];d&&w.push(d),w.push(`[${y.length} results]`);for(let I of y){w.push("");let T=wl(I.timestamp);w.push(`[${I.phase} | ${I.work_unit}/${I.topic} | ${I.confidence} | ${T}]`),w.push(I.content),w.push(`Source: ${I.source_file}`)}process.stdout.write(w.join(` `)+` `)}async function El(){let t=Z(),e=z.join(t,"config.json"),n=Q();if(!E.existsSync(t)){process.stdout.write(`not-ready @@ -187,7 +187,7 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `)}async function vl(){let t=Z(),e=Q(),n=G(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!E.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` `);return}let s=await k.loadStore(e),i=await k.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let u=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),E.existsSync(n)){let p=k.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${lr}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${ge(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${ur})`)}let y;try{y=me.loadConfig()}catch{y=null}if(y){let w=me.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),E.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=mr(),y=[];for(let w of p)await Ao(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} -`)}let h=[],m=null;try{m=JSON.parse(et(["list"]))}catch(p){tt("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` +`)}let h=[],m=null;try{m=JSON.parse(Me(["list"]))}catch(p){tt("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` `)}async function kl(t,e,n,r){let s=Q(),i=G(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. @@ -202,12 +202,12 @@ Type 'rebuild' to confirm: `),await Tl()!=="rebuild"&&(process.stderr.write(`Abo Rename them back manually to recover. Rollback error: ${f.message} `)}throw d}E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u)}function Tl(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function _l(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1));let n=Q(),r=Dl(e);if(e.dryRun){if(!E.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) +`),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. Check the name, or run \`knowledge status\` to see what is indexed.`):s}let n=Q(),r=Dl(e);if(e.dryRun){if(!E.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) `);return}let s=await k.loadStore(n),i={work_unit:{eq:e.workUnit}};e.phase&&(i.phase={eq:e.phase}),e.topic&&(i.topic={eq:e.topic});let o=await k.countByFilter(s,i);process.stdout.write(`Would remove ${o} chunks for ${r} `);return}if(await To(),!E.existsSync(n)){process.stdout.write(`Removed 0 chunks for ${r} `);return}try{let s=await _o(e);process.stdout.write(`Removed ${s} chunks for ${r} `)}catch(s){await ko(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). 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Expected false or a non-negative integer. `),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchFulltext(c,{term:"",limit:1e5});if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(d)){let p=Ml(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=yl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` `)+` @@ -217,6 +217,6 @@ Rename them back manually to recover. Rollback error: ${f.message} `),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await ml(i,o,c,a);break;case"query":await Al(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await vl();break;case"remove":await _l(i,o,c,a);break;case"compact":await Nl(i,o,c,a);break;case"rebuild":await kl(i,o,c,a);break;case"setup":await xo.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". ${go} -`),process.exit(1)}}module.exports={parseArgs:So,buildOptions:Io,deriveIdentity:hr,resolveProviderState:bo,withRetry:rt,UserError:O,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:wo,config:me,setup:xo,knowledgeDir:Z,storePath:Q,metadataPath:G,lockFilePath:se,INDEXED_PHASES:dr,KEYWORD_ONLY_DIMENSIONS:fr};require.main===module&&Do().catch(t=>{t instanceof O?process.stderr.write("Error: "+t.message+` +`),process.exit(1)}}module.exports={parseArgs:So,buildOptions:Io,deriveIdentity:hr,resolveProviderState:bo,withRetry:rt,UserError:U,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:wo,config:me,setup:xo,knowledgeDir:Z,storePath:Q,metadataPath:G,lockFilePath:se,INDEXED_PHASES:dr,KEYWORD_ONLY_DIMENSIONS:fr};require.main===module&&Do().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 62740e174..922c41736 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1707,6 +1707,29 @@ async function cmdRemove(_args, options) { process.exit(1); } + // Validate the work unit exists in the project registry. Without this, + // `remove --work-unit ` silently succeeds with "Removed 0 chunks" + // — a fat-finger is indistinguishable from a real no-op. The registry + // is authoritative (migration 031 backfills it from the filesystem), + // so a miss here means the caller has the wrong name. + // + // This check lives in cmdRemove only, not performRemoval — the pending- + // removal queue's drain path may legitimately target a WU that has since + // been removed from the registry (e.g. after absorption), and the stored + // chunks can still be cleaned up even when the WU entry is gone. + try { + runManifest(['project', 'get', options.workUnit]); + } catch (err) { + if (err && err.status === 2) { + throw new UserError( + `Work unit "${options.workUnit}" not found in project manifest. ` + + 'Check the name, or run `knowledge status` to see what is indexed.' + ); + } + // Any other manifest error is unexpected — rethrow so the stack shows. + throw err; + } + const sp = storePath(); const desc = formatRemoveDesc(options); diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 6827b3d21..483d2c54b 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -937,15 +937,30 @@ assert_eq "invoicing chunks unaffected" "true" "$(echo "$query_output" | grep -q assert_eq "billing chunks gone" "false" "$(echo "$query_output" | grep -q 'billing' && echo true || echo false)" teardown_project -# --- Test 41: Remove reports 0 when no chunks match --- -echo "Test 41: Remove 0 when no match" +# --- Test 41: Remove rejects unknown work unit (registry lookup) --- +# Previously this silently succeeded with 'Removed 0 chunks' — a fat-fingered +# --work-unit looked identical to a legitimate no-op removal. Now the work +# unit must exist in the project registry (migration 031 keeps the registry +# in sync with the filesystem). +echo "Test 41: Remove rejects unknown work unit" setup_project create_work_unit "auth-flow" "feature" "Auth" write_stub_config create_discussion_file "auth-flow" "auth-flow" run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 -output=$(run_kb remove --work-unit nonexistent 2>&1) -assert_eq "reports 0 removed" "true" "$(echo "$output" | grep -q 'Removed 0 chunks' && echo true || echo false)" +exit_code=0 +output=$(run_kb remove --work-unit nonexistent 2>&1) || exit_code=$? +assert_eq "exits non-zero on unknown wu" "true" "$([ "$exit_code" -ne 0 ] && echo true || echo false)" +assert_eq "error names the wu" "true" \ + "$(echo "$output" | grep -q '"nonexistent"' && echo true || echo false)" +assert_eq "error mentions project manifest" "true" \ + "$(echo "$output" | grep -q 'project manifest' && echo true || echo false)" +# Legitimate removal of an existing wu with 0 matching chunks still succeeds. +exit_code=0 +output=$(run_kb remove --work-unit auth-flow --phase research --topic nothing 2>&1) || exit_code=$? +assert_eq "wu-exists + no-match still succeeds" "0" "$exit_code" +assert_eq "reports 0 removed on real miss" "true" \ + "$(echo "$output" | grep -q 'Removed 0 chunks' && echo true || echo false)" teardown_project # --- Test 42: Remove errors when --topic given without --phase --- @@ -970,10 +985,12 @@ assert_eq "exits 1" "1" "$exit_code" assert_eq "shows usage" "true" "$(echo "$output" | grep -q 'Usage:' && echo true || echo false)" teardown_project -# --- Test 44: Remove from empty store reports 0 --- +# --- Test 44: Remove from empty/nonexistent store reports 0 (WU exists) --- echo "Test 44: Remove from empty/nonexistent store" setup_project +create_work_unit "auth-flow" "feature" "Auth" write_stub_config +# WU exists in registry but no store yet — should cleanly no-op. output=$(run_kb remove --work-unit auth-flow 2>&1) assert_eq "reports 0 removed" "true" "$(echo "$output" | grep -q 'Removed 0 chunks' && echo true || echo false)" teardown_project From b151d312cb6c21afb85332e0ba589f82482a4121 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Wed, 22 Apr 2026 20:40:09 +0100 Subject: [PATCH 36/78] fix(knowledge): bulk index refuses provider/dimension mismatch MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Changing the config (e.g. 128-dim stub → 1536-dim OpenAI) and running 'knowledge index' silently 'succeeded' with 'N already indexed.' The preflight isIndexed() check short-circuited per file before anything could notice the mismatch, so the existing store kept its old dims while the config drifted. 'query' surfaced the mismatch cryptically later; 'index' fooled the user into thinking nothing needed doing. Added a preflight resolveProviderState() call at the top of cmdIndexBulk, right after ensuring the knowledge dir. If metadata exists and diverges from current cfg/provider, the existing UserError ('Run knowledge rebuild to reindex') is thrown — same message as query, no stack noise thanks to the centralised UserError handling. First-ever bulk index (no metadata yet) skips the check naturally. Single-file cmdIndex already surfaces the mismatch through indexSingleFile → resolveProviderState, unaffected by this change. performRemoval and the pending-removal drain path are unaffected. Tests: Test 22b added after the query-mismatch test (22), same scenario flipped to bulk index. Three assertions (exits non-zero, error mentions rebuild, no 'already indexed' in output) all confirmed to fail on pre-fix code by reverting the preflight block. 168/168 CLI tests, smoke, integration, store all green. --- .../workflow-knowledge/scripts/knowledge.cjs | 126 +++++++++--------- src/knowledge/index.js | 14 ++ tests/scripts/test-knowledge-cli.sh | 35 +++++ 3 files changed, 112 insertions(+), 63 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 6b41899ed..7a545c15e 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var Xt=Object.defineProperty;var Mo=Object.getOwnPropertyDescriptor;var No=Object.getOwnPropertyNames;var Uo=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var we=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),te=(t,e)=>{for(var n in 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Ti={};te(Ti,{DecodeError:()=>$,Decoder:()=>G,EXT_TIMESTAMP:()=>Fn,Encoder:()=>_e,ExtData:()=>re,ExtensionCodec:()=>ce,decode:()=>xi,decodeArrayStream:()=>Ei,decodeAsync:()=>Ai,decodeMulti:()=>Si,decodeMultiStream:()=>vi,decodeTimestampExtension:()=>qn,decodeTimestampToTimeSpec:()=>jn,encode:()=>hi,encodeDateToTimeSpec:()=>Vn,encodeTimeSpecToTimestamp:()=>zn,encodeTimestampExtension:()=>Wn});var _i=v(()=>{pi();Ii();ki();Ft();Ot();Yn();Ct();Bn();Kn()});var Qn=we((yh,Oi)=>{"use strict";var F=require("fs"),j=(oi(),yr(ii)),{encode:Ea,decode:va}=(_i(),yr(Ti)),Zn=["id","content","work_unit","work_type","phase","topic","confidence","source_file","timestamp"];function Di(t){if(!Number.isInteger(t)||t<=0)throw new Error(`createStore: dimensions must be a positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function ka(t){let 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Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function ao(t){let e=B.systemConfigPath(),n=oo(e);if(n.exists&&n.valid){process.stdout.write(` +`),t.close(),process.exit(130)}),t}function jt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function ro(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let d of l.toString("utf8")){if(d===` +`||d==="\r")return c(),s.write(` +`),n(o.trim());if(d===""){c(),s.write(` +`),process.exit(130);return}if(d==="")return c(),s.write(` +`),n(o.trim());if(d==="\x7F"||d==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}d<" "||(o+=d,s.write("*"))}};r.on("data",a)})}function so({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function io(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function oo(){return{knowledge:{}}}function co(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function ao(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function qt({apiKey:t,model:e,dimensions:n}){let s=await new ol({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Kt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function lo(t){let e=B.systemConfigPath(),n=co(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let l=n.knowledge;if(process.stdout.write(` provider: ${l.provider==null?"(none \u2014 stub mode)":l.provider} @@ -51,12 +51,12 @@ Embedding provider: `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) `);let s;for(;s=(await jt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return B.writeConfigFile(e,so()),process.stdout.write(` +`);if(s==="skip")return B.writeConfigFile(e,io()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await jt(t,"Embedding model",Xi),o=await jt(t,"Vector dimensions",String(Zi)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),B.writeConfigFile(e,ro({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await jt(t,"Embedding model",Zi),o=await jt(t,"Vector dimensions",String(Qi)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),B.writeConfigFile(e,so({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let a=B.PROVIDER_ENV_VARS.openai;return await lo(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function lo(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`);let a=B.PROVIDER_ENV_VARS.openai;return await uo(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function uo(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... `);try{await qt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. `)}catch(c){let{message:a,hint:l}=Kt(c);process.stdout.write(`${a} @@ -85,7 +85,7 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await no(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await ro(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... @@ -95,7 +95,7 @@ Validating via a test embed... `),!await De(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}B.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function uo(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=co(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}}async function fo(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=ao(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await De(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -103,27 +103,27 @@ Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,io()),process.stdout.write(` config.json written -`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:Qi;if(!i.storeExists||i.fullyInitialised){let l=await cr.createStore(a);await cr.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) +`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,oo()),process.stdout.write(` config.json written +`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:eo;if(!i.storeExists||i.fullyInitialised){let l=await cr.createStore(a);await cr.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) `)}return(!i.metadataExists||i.fullyInitialised)&&(cr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function fo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` +`)),{created:!0,provider:c,dimensions:a}}async function ho(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function al(t,e,n){eo();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=to(),i;try{process.stdout.write(` +`)}}async function al(t,e,n){to();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=no(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await ao(s),await uo(s)}finally{s.close()}await fo(t,n),process.stdout.write(` +`),i=await lo(s),await fo(s)}finally{s.close()}await ho(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}ho.exports={cmdSetup:al,requireTTY:eo,createPrompter:to,ask:jt,askYesNo:De,askSecret:no,buildSystemConfigOpenAI:ro,buildSystemConfigStub:so,buildProjectConfigEmpty:io,detectSystemConfig:oo,detectProjectInit:co,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:lo,runSystemConfigStep:ao,runProjectInitStep:uo,runInitialIndexStep:fo,KEYWORD_ONLY_DIMENSIONS:Qi,OPENAI_DEFAULT_MODEL:Xi,OPENAI_DEFAULT_DIMENSIONS:Zi}});var E=require("fs"),z=require("path"),k=Qn(),wo=Ci(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Wt(),me=or(),xo=po(),dr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}po.exports={cmdSetup:al,requireTTY:to,createPrompter:no,ask:jt,askYesNo:De,askSecret:ro,buildSystemConfigOpenAI:so,buildSystemConfigStub:io,buildProjectConfigEmpty:oo,detectSystemConfig:co,detectProjectInit:ao,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:uo,runSystemConfigStep:lo,runProjectInitStep:fo,runInitialIndexStep:ho,KEYWORD_ONLY_DIMENSIONS:eo,OPENAI_DEFAULT_MODEL:Zi,OPENAI_DEFAULT_DIMENSIONS:Qi}});var E=require("fs"),z=require("path"),k=Qn(),xo=$i(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Wt(),me=or(),So=mo(),dr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,lr=10,fr=1536,mo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function So(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,lr=10,fr=1536,go=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function Io(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -148,34 +148,34 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results - --dry-run Preview without making changes`;function Z(){return z.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return z.join(Z(),"store.msp")}function G(){return z.join(Z(),"metadata.json")}function se(){return z.join(Z(),".lock")}function hl(t){return new Promise(e=>setTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;isetTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;ipr(s,o,n,r),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await vo(n,r,fl)}async function pr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=wo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=Z(),d=Q(),f=G(),h=se();E.existsSync(u)||E.mkdirSync(u,{recursive:!0});let m,S,g=E.existsSync(d),x=E.existsSync(f);g&&(m=await k.loadStore(d)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=bo(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||fr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let ee=String(M+1).padStart(3,"0"),Y={id:`${e.workUnit}-${e.phase}-${e.topic}-${ee}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(Y.embedding=w[M]),Y});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(d):E.existsSync(d)&&(m=await k.loadStore(d)),p==="full"&&E.existsSync(f)){let M=k.readMetadata(f),ee=y.dimensions();if(M.provider&&M.dimensions!==ee)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,d);let _=E.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function Me(t){let{execFileSync:e}=require("child_process");return e("node",[dl,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function tt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} -`)}async function Ao(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function mr(){let t=[],e;try{let n=Me(["list"]);e=JSON.parse(n)}catch(n){return tt("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of dr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Me(["resolve",`${r}.${s}.${o}`]).trim();l&&E.existsSync(z.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){tt(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Yt(t,e,n){let r=mr(),s=Z(),i=Q();E.existsSync(s)||E.mkdirSync(s,{recursive:!0});let o=null;E.existsSync(i)&&(o=await k.loadStore(i));let c=0,a=0,l=0;for(let u of r){if(o&&await Ao(o,u.workUnit,u.phase,u.topic)){l++;continue}try{let d={workUnit:u.workUnit,phase:u.phase,topic:u.topic},f=await rt(()=>pr(u.file,d,e,n),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexing ${u.file}... ${f} chunks -`),c++,a+=f,E.existsSync(i)&&(o=await k.loadStore(i))}catch(d){await Eo(u.file,d.message),process.stderr.write(`Failed to index ${u.file} after 3 attempts: ${d.message}. Added to pending queue. -`),d.stack&&process.stderr.write(d.stack+` -`)}}await vo(e,n,1/0),process.stdout.write(`Indexed ${c} files (${a} chunks). ${l} already indexed. -`)}async function Eo(t,e){let n=G(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Gt(t){let e=G(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function vo(t,e,n){let r=G();if(!E.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=lr){process.stderr.write(`Pending item ${o.file} exceeded ${lr} attempts \u2014 evicting. Last error: ${o.error} +`),process.exit(1));let o=hr(s),c=await rt(()=>mr(s,o,n,r),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await vo(n,r,fl)}async function mr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=xo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let d=Z(),u=Q(),f=q(),h=se();E.existsSync(d)||E.mkdirSync(d,{recursive:!0});let m,S,g=E.existsSync(u),x=E.existsSync(f);g&&(m=await k.loadStore(u)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=pr(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||fr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let ee=String(M+1).padStart(3,"0"),Y={id:`${e.workUnit}-${e.phase}-${e.topic}-${ee}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(Y.embedding=w[M]),Y});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(u):E.existsSync(u)&&(m=await k.loadStore(u)),p==="full"&&E.existsSync(f)){let M=k.readMetadata(f),ee=y.dimensions();if(M.provider&&M.dimensions!==ee)throw new Error(`Store schema changed during index (concurrent rebuild). 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Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=k.readMetadata(c),h=bl(f,n,r);l=h.mode,d=h.provider,l==="keyword-only"?u="[keyword-only mode \u2014 configure embedding provider for semantic search]":l==="upgrade-available"&&(u="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let m={};if(e.phase){let I=e.phase.split(",").map(T=>T.trim());m.phase=I.length===1?{eq:I[0]}:{in:I}}if(e.workType){let I=e.workType.split(",").map(T=>T.trim());m.work_type=I.length===1?{eq:I[0]}:{in:I}}if(e.workUnit){let I=e.workUnit.split(",").map(T=>T.trim());m.work_unit=I.length===1?{eq:I[0]}:{in:I}}if(e.topic){let I=e.topic.split(",").map(T=>T.trim());m.topic=I.length===1?{eq:I[0]}:{in:I}}let S=n.similarity_threshold||.8,g=Object.keys(m).length>0?m:void 0,x=new Map;for(let I of s){let T;if(l==="full"&&d){let D=await rt(()=>d.embed(I),{maxAttempts:3,backoff:nt});T=await k.searchHybrid(a,{term:I,vector:D,where:g,limit:i*2,similarity:S})}else T=await k.searchFulltext(a,{term:I,where:g,limit:i*2});for(let D of T){let _=x.get(D.id);(!_||D.score>_.score)&&x.set(D.id,D)}}let p=Il(e.boosts),y=Sl(Array.from(x.values()),p);y.length>i&&(y=y.slice(0,i));let w=[];u&&w.push(u),w.push(`[${y.length} results]`);for(let I of y){w.push("");let T=wl(I.timestamp);w.push(`[${I.phase} | ${I.work_unit}/${I.topic} | ${I.confidence} | ${T}]`),w.push(I.content),w.push(`Source: ${I.source_file}`)}process.stdout.write(w.join(` `)+` `)}async function El(){let t=Z(),e=z.join(t,"config.json"),n=Q();if(!E.existsSync(t)){process.stdout.write(`not-ready `);return}if(!E.existsSync(e)){process.stdout.write(`not-ready @@ -184,23 +184,23 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `);return}if(!E.existsSync(n)){process.stdout.write(`not-ready `);return}try{await k.loadStore(n)}catch{process.stdout.write(`not-ready `);return}process.stdout.write(`ready -`)}async function vl(){let t=Z(),e=Q(),n=G(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!E.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` +`)}async function vl(){let t=Z(),e=Q(),n=q(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!E.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await k.loadStore(e),i=await k.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let u=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),E.existsSync(n)){let p=k.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${lr}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${ge(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${ur})`)}let y;try{y=me.loadConfig()}catch{y=null}if(y){let w=me.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),E.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=mr(),y=[];for(let w of p)await Ao(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} +`);return}let s=await k.loadStore(e),i=await k.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let d=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${d} KB`),E.existsSync(n)){let p=k.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${lr}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${ge(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${ur})`)}let y;try{y=me.loadConfig()}catch{y=null}if(y){let w=me.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let u=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),E.existsSync(z.resolve(p.source_file))||u.push(p.source_file));if(u.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${u.length} files`);for(let p of u)r.push(` ${p}`)}try{let p=gr(),y=[];for(let w of p)await Ao(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} `)}let h=[],m=null;try{m=JSON.parse(Me(["list"]))}catch(p){tt("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` -`)}async function kl(t,e,n,r){let s=Q(),i=G(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function kl(t,e,n,r){let s=Q(),i=q(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. Type 'rebuild' to confirm: `),await Tl()!=="rebuild"&&(process.stderr.write(`Aborted. -`),process.exit(1)),mr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +`),process.exit(1)),gr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1));let l=s+".bak",u=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,u);let d=r?r.dimensions():n&&n.dimensions||fr,f=await k.createStore(d);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. -`);try{await Yt(e,n,r)}catch(d){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(u)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(u,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. +`),process.exit(1));let l=s+".bak",d=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,d);let u=r?r.dimensions():n&&n.dimensions||fr,f=await k.createStore(u);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`);try{await Yt(e,n,r)}catch(u){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(d)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(d,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. `)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. Previous index is at: ${l} - ${u} + ${d} Rename them back manually to recover. Rollback error: ${f.message} -`)}throw d}E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u)}function Tl(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function _l(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] +`)}throw u}E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d)}function Tl(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function _l(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase `),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. Check the name, or run \`knowledge status\` to see what is indexed.`):s}let n=Q(),r=Dl(e);if(e.dryRun){if(!E.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) `);return}let s=await k.loadStore(n),i={work_unit:{eq:e.workUnit}};e.phase&&(i.phase={eq:e.phase}),e.topic&&(i.topic={eq:e.topic});let o=await k.countByFilter(s,i);process.stdout.write(`Would remove ${o} chunks for ${r} @@ -209,14 +209,14 @@ Rename them back manually to recover. Rollback error: ${f.message} `)}catch(s){await ko(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. `),process.exit(1)}}function Dl(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Ml(t){try{let e=Me(["get",t,"status"]).trim(),n=null;try{n=Me(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){tt(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return tt(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Nl(t,e,n){await To();let r=Q(),s=se(),i=n&&n.decay_months!==void 0?n.decay_months:me.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchFulltext(c,{term:"",limit:1e5});if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(d)){let p=Ml(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=yl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` +`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let d=await k.searchFulltext(c,{term:"",limit:1e5});if(d.length===0)return;let u={};for(let g of d)u[g.work_unit]||(u[g.work_unit]=[]),u[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(u)){let p=Ml(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=yl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` `)+` `);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),x=new Set;for(let p of h){let y=`${p.work_unit}|${p.phase}|${p.topic}`;x.has(y)||(x.add(y),await k.removeByIdentity(g,p))}await k.saveStore(g,r)});let S=[];S.push(`Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)S.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(S.join(` `)+` -`)}async function Do(){let t=process.argv.slice(2),{positional:e,flags:n,boosts:r}=So(t),s=e[0],i=e.slice(1),o=Io(n,r);s||(process.stderr.write(go+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await ml(i,o,c,a);break;case"query":await Al(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await vl();break;case"remove":await _l(i,o,c,a);break;case"compact":await Nl(i,o,c,a);break;case"rebuild":await kl(i,o,c,a);break;case"setup":await xo.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`)}async function Do(){let t=process.argv.slice(2),{positional:e,flags:n,boosts:r}=Io(t),s=e[0],i=e.slice(1),o=bo(n,r);s||(process.stderr.write(yo+` +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await ml(i,o,c,a);break;case"query":await Al(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await vl();break;case"remove":await _l(i,o,c,a);break;case"compact":await Nl(i,o,c,a);break;case"rebuild":await kl(i,o,c,a);break;case"setup":await So.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". -${go} -`),process.exit(1)}}module.exports={parseArgs:So,buildOptions:Io,deriveIdentity:hr,resolveProviderState:bo,withRetry:rt,UserError:U,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:wo,config:me,setup:xo,knowledgeDir:Z,storePath:Q,metadataPath:G,lockFilePath:se,INDEXED_PHASES:dr,KEYWORD_ONLY_DIMENSIONS:fr};require.main===module&&Do().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +${yo} +`),process.exit(1)}}module.exports={parseArgs:Io,buildOptions:bo,deriveIdentity:hr,resolveProviderState:pr,withRetry:rt,UserError:U,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:xo,config:me,setup:So,knowledgeDir:Z,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:dr,KEYWORD_ONLY_DIMENSIONS:fr};require.main===module&&Do().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 922c41736..f8fc95188 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -697,12 +697,26 @@ async function cmdIndexBulk(options, cfg, provider) { const kDir = knowledgeDir(); const sp = storePath(); + const mp = metadataPath(); // Ensure knowledge directory exists. if (!fs.existsSync(kDir)) { fs.mkdirSync(kDir, { recursive: true }); } + // Preflight: if a prior store exists, validate the current config's + // provider/model/dimensions match what the store was built with. Without + // this check, a config change (e.g. 128-dim stub → 1536-dim OpenAI) that + // triggers bulk index would short-circuit at the isIndexed() step for + // every file and report "Indexed 0 files. N already indexed." as though + // everything were fine — while the stored embeddings are still at the old + // dimensions. resolveProviderState throws a UserError with the "Run + // `knowledge rebuild`" hint, same as `query` surfaces on mismatch. + if (fs.existsSync(mp)) { + const meta = store.readMetadata(mp); + resolveProviderState(meta, cfg, provider); + } + // Load existing store to check what's already indexed. let db = null; if (fs.existsSync(sp)) { diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 483d2c54b..5155dc23a 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -476,6 +476,41 @@ assert_eq "query refuses mismatch" "true" "$([ "$exit_code" -ne 0 ] && echo true assert_eq "mentions rebuild" "true" "$(echo "$output" | grep -q 'rebuild' && echo true || echo false)" teardown_project +# --- Test 22b: Bulk index also refuses provider/dimension mismatch --- +# Previously: bulk index with a mismatching config short-circuited at +# isIndexed() for every file, reported 'N already indexed' as if fine, +# and the stored embeddings silently diverged from the configured dims. +# Now: preflight resolveProviderState check fires before the per-file +# loop, same 'Run knowledge rebuild' message as query. +echo "Test 22b: Bulk index refuses provider mismatch" +setup_project +create_work_unit "auth-flow" "feature" "Auth" +write_stub_config +create_discussion_file "auth-flow" "auth-flow" +run_kb index .workflows/auth-flow/discussion/auth-flow.md >/dev/null 2>&1 +# Simulate a provider/dimension change by editing metadata. +node -e " + const fs = require('fs'); + const mp = '$TEST_ROOT/.workflows/.knowledge/metadata.json'; + const m = JSON.parse(fs.readFileSync(mp, 'utf8')); + m.provider = 'openai'; + m.model = 'text-embedding-3-small'; + m.dimensions = 1536; + fs.writeFileSync(mp, JSON.stringify(m, null, 2) + '\n'); +" +cd "$TEST_ROOT" && node "$MANIFEST_JS" set auth-flow.discussion.auth-flow status completed >/dev/null 2>&1 +exit_code=0 +# Bulk-index (no file arg) should now error on the mismatch instead of +# silently reporting 'N already indexed'. +output=$(run_kb index 2>&1) || exit_code=$? +assert_eq "bulk index refuses mismatch" "true" \ + "$([ "$exit_code" -ne 0 ] && echo true || echo false)" +assert_eq "error mentions rebuild" "true" \ + "$(echo "$output" | grep -q 'rebuild' && echo true || echo false)" +assert_eq "bulk did NOT report 'already indexed'" "false" \ + "$(echo "$output" | grep -q 'already indexed' && echo true || echo false)" +teardown_project + # --- Test 23: Stub-to-full upgrade note --- echo "Test 23: Stub-to-full upgrade note" setup_project From 00419cd27b3f338ac2750d83e39b3b2cfb21c062 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Wed, 22 Apr 2026 20:52:30 +0100 Subject: [PATCH 37/78] docs(skills): planning+implementation signposts align with knowledge-usage MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Both SKILL.md files had a signpost blockquote at their knowledge-usage load step saying 'proactive querying is available' — directly contradicting knowledge-usage.md Section E, which says 'do not query during planning' and 'rare in practice' for implementation. Signposts render first; a model reads the invitation before loading the reference that restricts it. Rewrote both to match the guidance: - Planning: 'Planning operates from the spec as the golden source — the guide documents the narrow cases where a KB query is warranted, and those where it is not.' - Implementation: 'Implementation reads the code as the source of truth for *what* exists — the guide documents the rare cases where the KB is useful for the *why* behind an existing pattern.' Prose-only change. No code, no tests touched. 168/168 CLI + smoke green (sanity). --- skills/workflow-implementation-process/SKILL.md | 6 ++++-- skills/workflow-planning-process/SKILL.md | 5 +++-- 2 files changed, 7 insertions(+), 4 deletions(-) diff --git a/skills/workflow-implementation-process/SKILL.md b/skills/workflow-implementation-process/SKILL.md index 16cc9b179..25a12b85a 100644 --- a/skills/workflow-implementation-process/SKILL.md +++ b/skills/workflow-implementation-process/SKILL.md @@ -206,8 +206,10 @@ Load **[linter-setup.md](references/linter-setup.md)** and follow its instructio > *Output the next fenced block as markdown (not a code block):* ``` -> Loading the usage guide for the knowledge base so -> proactive querying is available while tasks execute. +> Loading the usage guide for the knowledge base. Implementation reads +> the code as the source of truth for *what* exists — the guide +> documents the rare cases where the KB is useful for the *why* +> behind an existing pattern. ``` Load **[knowledge-usage.md](../workflow-knowledge/references/knowledge-usage.md)** and follow its instructions as written. diff --git a/skills/workflow-planning-process/SKILL.md b/skills/workflow-planning-process/SKILL.md index 9fa6f68fa..235688174 100644 --- a/skills/workflow-planning-process/SKILL.md +++ b/skills/workflow-planning-process/SKILL.md @@ -215,8 +215,9 @@ Load **[planning-principles.md](references/planning-principles.md)** and follow > *Output the next fenced block as markdown (not a code block):* ``` -> Loading the usage guide for the knowledge base so -> proactive querying is available while planning tasks. +> Loading the usage guide for the knowledge base. Planning operates +> from the spec as the golden source — the guide documents the narrow +> cases where a KB query is warranted, and those where it is not. ``` Load **[knowledge-usage.md](../workflow-knowledge/references/knowledge-usage.md)** and follow its instructions as written. From 8af6584f4455b9bc1b9651dbfc4d17bf703a8a49 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Wed, 22 Apr 2026 20:56:38 +0100 Subject: [PATCH 38/78] docs(skills): canonicalise terminal-stop wording across all call sites MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit CLAUDE.md defines exactly one form for terminal stops: **STOP.** Do not proceed — terminal condition. Nine sites used the non-canonical 'This is terminal — do not return to the caller/backbone.' or 'the invoked skill takes over.' These risk a model continuing past the handoff because the sentence doesn't parse as a stop gate by convention. Agent 1's audit flagged 2 sites (manage-work-unit.md, absorb-into- epic.md); grep across skills/ found 7 more with the identical pattern. All 9 replaced with 'Invoke … .\n\n**STOP.** Do not proceed — terminal condition.' Files changed: - continue-bugfix/SKILL.md - continue-cross-cutting/SKILL.md - continue-feature/SKILL.md - continue-quickfix/SKILL.md - workflow-discussion-entry/references/display-options.md - workflow-scoping-process/references/complexity-check.md (2 sites) - workflow-start/references/absorb-into-epic.md - workflow-start/references/manage-work-unit.md Prose-only. 168/168 CLI + smoke green. Final grep confirms zero non-canonical phrases remain. --- skills/continue-bugfix/SKILL.md | 4 +++- skills/continue-cross-cutting/SKILL.md | 4 +++- skills/continue-feature/SKILL.md | 4 +++- skills/continue-quickfix/SKILL.md | 4 +++- .../references/display-options.md | 4 +++- .../references/complexity-check.md | 8 ++++++-- skills/workflow-start/references/absorb-into-epic.md | 4 +++- skills/workflow-start/references/manage-work-unit.md | 4 +++- 8 files changed, 27 insertions(+), 9 deletions(-) diff --git a/skills/continue-bugfix/SKILL.md b/skills/continue-bugfix/SKILL.md index 237dd8f7e..9ed9b0a71 100644 --- a/skills/continue-bugfix/SKILL.md +++ b/skills/continue-bugfix/SKILL.md @@ -242,4 +242,6 @@ Skills receive positional arguments: `$0` = work_type (`bugfix`), `$1` = work_un If the user chose to revisit a completed phase in Step 5, use that phase instead of `next_phase`. -Invoke the skill. This is terminal — do not return to the backbone. +Invoke the skill. + +**STOP.** Do not proceed — terminal condition. diff --git a/skills/continue-cross-cutting/SKILL.md b/skills/continue-cross-cutting/SKILL.md index 1c0612578..2449ce575 100644 --- a/skills/continue-cross-cutting/SKILL.md +++ b/skills/continue-cross-cutting/SKILL.md @@ -240,4 +240,6 @@ Skills receive positional arguments: `$0` = work_type (`cross-cutting`), `$1` = If the user chose to revisit a completed phase in Step 5, use that phase instead of `next_phase`. -Invoke the skill. This is terminal — do not return to the backbone. +Invoke the skill. + +**STOP.** Do not proceed — terminal condition. diff --git a/skills/continue-feature/SKILL.md b/skills/continue-feature/SKILL.md index c16e559e9..edb052e20 100644 --- a/skills/continue-feature/SKILL.md +++ b/skills/continue-feature/SKILL.md @@ -243,4 +243,6 @@ Skills receive positional arguments: `$0` = work_type (`feature`), `$1` = work_u If the user chose to revisit a completed phase in Step 5, use that phase instead of `next_phase`. -Invoke the skill. This is terminal — do not return to the backbone. +Invoke the skill. + +**STOP.** Do not proceed — terminal condition. diff --git a/skills/continue-quickfix/SKILL.md b/skills/continue-quickfix/SKILL.md index 514cbe65b..9f719765a 100644 --- a/skills/continue-quickfix/SKILL.md +++ b/skills/continue-quickfix/SKILL.md @@ -240,4 +240,6 @@ Skills receive positional arguments: `$0` = work_type (`quick-fix`), `$1` = work If the user chose to revisit a completed phase in Step 5, use that phase instead of `next_phase`. -Invoke the skill. This is terminal — do not return to the backbone. +Invoke the skill. + +**STOP.** Do not proceed — terminal condition. diff --git a/skills/workflow-discussion-entry/references/display-options.md b/skills/workflow-discussion-entry/references/display-options.md index d684480f5..16599ee92 100644 --- a/skills/workflow-discussion-entry/references/display-options.md +++ b/skills/workflow-discussion-entry/references/display-options.md @@ -132,7 +132,9 @@ Set source="fresh". #### If user chose `back` -Re-invoke the caller's entry-point skill to return to its menu. Invoke `/continue-epic {work_unit}`. This is terminal — the invoked skill takes over. +Re-invoke the caller's entry-point skill to return to its menu. Invoke `/continue-epic {work_unit}`. + +**STOP.** Do not proceed — terminal condition. #### If user chose `refresh` diff --git a/skills/workflow-scoping-process/references/complexity-check.md b/skills/workflow-scoping-process/references/complexity-check.md index 6c7e7cf6e..7abefa5d6 100644 --- a/skills/workflow-scoping-process/references/complexity-check.md +++ b/skills/workflow-scoping-process/references/complexity-check.md @@ -61,7 +61,9 @@ node .claude/skills/workflow-manifest/scripts/manifest.cjs set {work_unit} work_ Commit: `workflow({work_unit}): promote quick-fix to feature` -Invoke `/workflow-discussion-entry feature {work_unit}`. This is terminal — do not return to the caller. +Invoke `/workflow-discussion-entry feature {work_unit}`. + +**STOP.** Do not proceed — terminal condition. #### If `bugfix` @@ -73,4 +75,6 @@ node .claude/skills/workflow-manifest/scripts/manifest.cjs set {work_unit} work_ Commit: `workflow({work_unit}): promote quick-fix to bugfix` -Invoke `/workflow-investigation-entry bugfix {work_unit}`. This is terminal — do not return to the caller. +Invoke `/workflow-investigation-entry bugfix {work_unit}`. + +**STOP.** Do not proceed — terminal condition. diff --git a/skills/workflow-start/references/absorb-into-epic.md b/skills/workflow-start/references/absorb-into-epic.md index e6c069d1f..352daac4f 100644 --- a/skills/workflow-start/references/absorb-into-epic.md +++ b/skills/workflow-start/references/absorb-into-epic.md @@ -357,7 +357,9 @@ Absorbed into Epic #### If user chose `c`/`continue` -Invoke the `/continue-epic` skill. This is terminal — do not return to the caller. +Invoke the `/continue-epic` skill. + +**STOP.** Do not proceed — terminal condition. #### If user chose `b`/`back` diff --git a/skills/workflow-start/references/manage-work-unit.md b/skills/workflow-start/references/manage-work-unit.md index a72832317..a4329f66e 100644 --- a/skills/workflow-start/references/manage-work-unit.md +++ b/skills/workflow-start/references/manage-work-unit.md @@ -222,7 +222,9 @@ Load **[reindex-work-unit.md](../../workflow-knowledge/references/reindex-work-u **If user chose `c`/`continue`:** -Invoke the `/continue-epic` skill. This is terminal — do not return to the caller. +Invoke the `/continue-epic` skill. + +**STOP.** Do not proceed — terminal condition. **If user chose `b`/`back`:** From 6c3c197428ef210c7a5c9cb1b96dd7cf57dd07e5 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Wed, 22 Apr 2026 21:15:04 +0100 Subject: [PATCH 39/78] fix(knowledge): respect explicit similarity_threshold=0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit cfg.similarity_threshold || 0.8 silently overrode an explicit 0 with the default — classic JS footgun where 0 is legitimate data but gets coerced as falsy. Setting similarity_threshold=0 means 'accept all vector matches, no filtering', a valid config the user was blocked from using. Changed to ?? (nullish coalescing). Only null/undefined fall back to 0.8; explicit 0 is now respected. Checked adjacent || fallbacks — dimensions, limit, provider, model — all have string/positive-integer semantics where 0 is meaningless. Kept them as-is. Only similarity_threshold had the real zero-is-valid case. 168/168 CLI tests, smoke, store, integration, config all green. --- skills/workflow-knowledge/scripts/knowledge.cjs | 2 +- src/knowledge/index.js | 5 ++++- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 7a545c15e..4e6f0de5c 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -175,7 +175,7 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== Store: provider=${r}, model=${s}, dimensions=${i} Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Al(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--work-unit ...] [--work-type ...] [--phase ...] [--topic ...] [--boost: ]... [--limit N] `),process.exit(1));for(let I of t)if(typeof I!="string"||I.trim()==="")throw new U("Empty search term. `knowledge query` requires at least one non-empty positional term. If you intended to list everything indexed, use `knowledge status` instead.");let s=t,i=e.limit||10,o=Q(),c=q();if(!E.existsSync(o)){process.stdout.write(`[0 results] -`);return}let a=await k.loadStore(o),l="keyword-only",d=null,u=null;E.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=k.readMetadata(c),h=bl(f,n,r);l=h.mode,d=h.provider,l==="keyword-only"?u="[keyword-only mode \u2014 configure embedding provider for semantic search]":l==="upgrade-available"&&(u="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let m={};if(e.phase){let I=e.phase.split(",").map(T=>T.trim());m.phase=I.length===1?{eq:I[0]}:{in:I}}if(e.workType){let I=e.workType.split(",").map(T=>T.trim());m.work_type=I.length===1?{eq:I[0]}:{in:I}}if(e.workUnit){let I=e.workUnit.split(",").map(T=>T.trim());m.work_unit=I.length===1?{eq:I[0]}:{in:I}}if(e.topic){let I=e.topic.split(",").map(T=>T.trim());m.topic=I.length===1?{eq:I[0]}:{in:I}}let S=n.similarity_threshold||.8,g=Object.keys(m).length>0?m:void 0,x=new Map;for(let I of s){let T;if(l==="full"&&d){let D=await rt(()=>d.embed(I),{maxAttempts:3,backoff:nt});T=await k.searchHybrid(a,{term:I,vector:D,where:g,limit:i*2,similarity:S})}else T=await k.searchFulltext(a,{term:I,where:g,limit:i*2});for(let D of T){let _=x.get(D.id);(!_||D.score>_.score)&&x.set(D.id,D)}}let p=Il(e.boosts),y=Sl(Array.from(x.values()),p);y.length>i&&(y=y.slice(0,i));let w=[];u&&w.push(u),w.push(`[${y.length} results]`);for(let I of y){w.push("");let T=wl(I.timestamp);w.push(`[${I.phase} | ${I.work_unit}/${I.topic} | ${I.confidence} | ${T}]`),w.push(I.content),w.push(`Source: ${I.source_file}`)}process.stdout.write(w.join(` +`);return}let a=await k.loadStore(o),l="keyword-only",d=null,u=null;E.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=k.readMetadata(c),h=bl(f,n,r);l=h.mode,d=h.provider,l==="keyword-only"?u="[keyword-only mode \u2014 configure embedding provider for semantic search]":l==="upgrade-available"&&(u="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let m={};if(e.phase){let I=e.phase.split(",").map(T=>T.trim());m.phase=I.length===1?{eq:I[0]}:{in:I}}if(e.workType){let I=e.workType.split(",").map(T=>T.trim());m.work_type=I.length===1?{eq:I[0]}:{in:I}}if(e.workUnit){let I=e.workUnit.split(",").map(T=>T.trim());m.work_unit=I.length===1?{eq:I[0]}:{in:I}}if(e.topic){let I=e.topic.split(",").map(T=>T.trim());m.topic=I.length===1?{eq:I[0]}:{in:I}}let S=n.similarity_threshold??.8,g=Object.keys(m).length>0?m:void 0,x=new Map;for(let I of s){let T;if(l==="full"&&d){let D=await rt(()=>d.embed(I),{maxAttempts:3,backoff:nt});T=await k.searchHybrid(a,{term:I,vector:D,where:g,limit:i*2,similarity:S})}else T=await k.searchFulltext(a,{term:I,where:g,limit:i*2});for(let D of T){let _=x.get(D.id);(!_||D.score>_.score)&&x.set(D.id,D)}}let p=Il(e.boosts),y=Sl(Array.from(x.values()),p);y.length>i&&(y=y.slice(0,i));let w=[];u&&w.push(u),w.push(`[${y.length} results]`);for(let I of y){w.push("");let T=wl(I.timestamp);w.push(`[${I.phase} | ${I.work_unit}/${I.topic} | ${I.confidence} | ${T}]`),w.push(I.content),w.push(`Source: ${I.source_file}`)}process.stdout.write(w.join(` `)+` `)}async function El(){let t=Z(),e=z.join(t,"config.json"),n=Q();if(!E.existsSync(t)){process.stdout.write(`not-ready `);return}if(!E.existsSync(e)){process.stdout.write(`not-ready diff --git a/src/knowledge/index.js b/src/knowledge/index.js index f8fc95188..e4af1d2b6 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1240,7 +1240,10 @@ async function cmdQuery(args, options, cfg, provider) { where.topic = topics.length === 1 ? { eq: topics[0] } : { in: topics }; } - const similarity = cfg.similarity_threshold || 0.8; + // ?? (not ||) so an explicit `similarity_threshold: 0` — a legitimate + // "accept all vector matches, no filtering" setting — isn't silently + // rewritten to the default. + const similarity = cfg.similarity_threshold ?? 0.8; const whereClause = Object.keys(where).length > 0 ? where : undefined; // Run a search per term and merge. From 0ff26a980aaac6dce56f53871dd26aed7082d8ee Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Wed, 22 Apr 2026 22:51:53 +0100 Subject: [PATCH 40/78] fix(migrate): 037 reports accurate counter + surfaces crashes MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Migration 037 is on phase-5+ only — never deployed to main, never present in any project's migration log. So editing it now actually helps the first real user who runs the post-merge AGNTC update. Contrast with migrations 031-036 which are deployed and off-limits. Two issues fixed: 1. report_update was called unconditionally on node-exit-0, even when zero work units needed backfilling. Now: the node block counts modifications and exits 2 when nothing ran; the bash wrapper routes exit 2 to report_skip. Keeps the orchestrator's FILES_UPDATED counter honest and prevents the false 'review changes' prompt on a no-op run. 2. node stderr was being swallowed via 2>/dev/null. A future bug inside the node script would leave the migration silently skipping. Removed the redirect — any stderr now passes through to the orchestrator. Verified manually by injecting a typo: ReferenceError stack is now visible. Wrapper pattern 'node … && rc=0 || rc=$?' chosen so the non-zero exit-2 doesn't trip 'set -eo pipefail' in the orchestrator (same pattern I built for 036 before that fix was withdrawn on the deployed-migration grounds). Tests: test-migration-037.sh harness updated — report_update / report_skip stubs now record which was called via $REPORT_CALLED. Three new tests: - test_counter_reports_update_when_modified - test_counter_reports_skip_when_nothing_to_do - test_counter_reports_skip_on_empty_workflows Confirmed the two 'should skip' assertions fail on pre-fix code by reverting the wrapper temporarily. 16/16 migration-037 tests pass on the fix. 168/168 CLI + smoke unaffected. --- .../migrations/037-completed-at-gap.sh | 13 +++- tests/scripts/test-migration-037.sh | 67 ++++++++++++++++++- 2 files changed, 76 insertions(+), 4 deletions(-) diff --git a/skills/workflow-migrate/scripts/migrations/037-completed-at-gap.sh b/skills/workflow-migrate/scripts/migrations/037-completed-at-gap.sh index 8a5e114e8..73652ee8c 100644 --- a/skills/workflow-migrate/scripts/migrations/037-completed-at-gap.sh +++ b/skills/workflow-migrate/scripts/migrations/037-completed-at-gap.sh @@ -61,6 +61,7 @@ function toISODate(ms) { return yyyy + '-' + mm + '-' + dd; } +let modified = 0; for (const entry of entries) { if (!entry.isDirectory() || entry.name.startsWith('.')) continue; @@ -84,11 +85,19 @@ for (const entry of entries) { m.completed_at = toISODate(latest); fs.writeFileSync(mPath, JSON.stringify(m, null, 2) + '\n'); + modified++; } -" "$WORKFLOWS_DIR" 2>/dev/null +// Exit 2 = 'no changes' so the bash wrapper reports skip rather than +// inflating the orchestrator's FILES_UPDATED counter when nothing ran. +// Anything else non-zero = unexpected crash — stderr passes through so +// the orchestrator surfaces it. +process.exit(modified > 0 ? 0 : 2); +" "$WORKFLOWS_DIR" && rc=0 || rc=$? -if [ $? -eq 0 ]; then +if [ "$rc" -eq 0 ]; then report_update else + # exit 2 (no changes) or any other non-zero (real crash, stderr was + # already printed above). In both cases don't inflate the counter. report_skip fi diff --git a/tests/scripts/test-migration-037.sh b/tests/scripts/test-migration-037.sh index 900cb7634..2629558ae 100644 --- a/tests/scripts/test-migration-037.sh +++ b/tests/scripts/test-migration-037.sh @@ -14,8 +14,8 @@ MIGRATION="$REPO_DIR/skills/workflow-migrate/scripts/migrations/037-completed-at PASS=0 FAIL=0 -report_update() { : ; } -report_skip() { : ; } +report_update() { REPORT_CALLED=update; } +report_skip() { REPORT_CALLED=skip; } assert_eq() { local label="$1" expected="$2" actual="$3" @@ -33,6 +33,7 @@ setup() { TEST_DIR=$(mktemp -d /tmp/migration-037-test.XXXXXX) export PROJECT_DIR="$TEST_DIR" mkdir -p "$TEST_DIR/.workflows" + REPORT_CALLED="" } teardown() { @@ -301,6 +302,65 @@ JSON teardown } +# --- Test 10: Counter accuracy — update path calls report_update --- +test_counter_reports_update_when_modified() { + setup + + mkdir -p "$TEST_DIR/.workflows/needs-backfill/discussion" + cat > "$TEST_DIR/.workflows/needs-backfill/manifest.json" <<'JSON' +{ + "name": "needs-backfill", + "work_type": "feature", + "status": "completed", + "phases": {} +} +JSON + echo "content" > "$TEST_DIR/.workflows/needs-backfill/discussion/topic.md" + touch -t 202501150930 "$TEST_DIR/.workflows/needs-backfill/discussion/topic.md" + + source "$MIGRATION" + + assert_eq "report_update called when modified" "update" "$REPORT_CALLED" + + teardown +} + +# --- Test 11: Counter accuracy — no-op path calls report_skip --- +test_counter_reports_skip_when_nothing_to_do() { + setup + + # Only an already-backfilled WU exists — migration has nothing to do. + mkdir -p "$TEST_DIR/.workflows/already-done/discussion" + cat > "$TEST_DIR/.workflows/already-done/manifest.json" <<'JSON' +{ + "name": "already-done", + "work_type": "feature", + "status": "completed", + "completed_at": "2025-03-01", + "phases": {} +} +JSON + echo "content" > "$TEST_DIR/.workflows/already-done/discussion/topic.md" + + source "$MIGRATION" + + assert_eq "report_skip called when nothing modified" "skip" "$REPORT_CALLED" + + teardown +} + +# --- Test 12: Counter accuracy — empty workflows dir calls report_skip --- +test_counter_reports_skip_on_empty_workflows() { + setup + + # No work units at all. + source "$MIGRATION" + + assert_eq "report_skip on empty workflows" "skip" "$REPORT_CALLED" + + teardown +} + # --- Run all tests --- echo "Running migration 037 tests..." echo "" @@ -314,6 +374,9 @@ test_multiple test_content_preservation test_no_workflows test_empty_work_unit +test_counter_reports_update_when_modified +test_counter_reports_skip_when_nothing_to_do +test_counter_reports_skip_on_empty_workflows echo "" echo "Results: $PASS passed, $FAIL failed" From 8c6fd446dd70ea52253176ab6e8f97005569ad2a Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Wed, 22 Apr 2026 22:53:45 +0100 Subject: [PATCH 41/78] docs(skills): workflow-start Step 0.2 gains the 'already invoked' gate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Every other entry-point skill's Step 0.2 (start-bugfix, start-feature, start-epic, start-cross-cutting, continue-*, workflow-migrate-entry) wraps the migration invocation in a gate: #### If the /workflow-migrate skill has already been invoked in this conversation → Proceed to Step 0.3. #### Otherwise [invoke migrations] workflow-start ran migrations unconditionally. In normal flow it is always the first entry-point so the gate never fires either way, but the drift is real: a future maintainer reading workflow-start vs any other entry-point sees inconsistent patterns and has to guess which is canonical. Aligned with the convention. Prose only. 168/168 CLI + smoke green. --- skills/workflow-start/SKILL.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/skills/workflow-start/SKILL.md b/skills/workflow-start/SKILL.md index 67db7e081..d1289e863 100644 --- a/skills/workflow-start/SKILL.md +++ b/skills/workflow-start/SKILL.md @@ -56,6 +56,12 @@ Load **[casing-conventions.md](../workflow-shared/references/casing-conventions. ### Step 0.2: Migrations +#### If the `/workflow-migrate` skill has already been invoked in this conversation + +→ Proceed to **Step 0.3**. + +#### Otherwise + > *Output the next fenced block as markdown (not a code block):* ``` From 87109d984879a5356036ba738358caf48c9fbc62 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Wed, 22 Apr 2026 23:28:58 +0100 Subject: [PATCH 42/78] docs(skills): clear stale completed_at on reactivation from completed MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit When a completed work unit is reactivated via view-completed.md the status flipped to in-progress but completed_at was left behind — manifest then carried a completion date for an in-progress work unit. Cosmetic today (nothing reads completed_at except compact, which gates on status first), but the pair is self-contradictory data and breaks if any future feature keys on completed_at. Added an exists-check + conditional delete in the 'was completed' branch. completed_at is backfilled by migration 036/037 for normal flows, but a completed work unit with no artifact files skips backfill, so check before deleting rather than accepting an error. Prose-only change in a skill file. --- skills/workflow-start/references/view-completed.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/skills/workflow-start/references/view-completed.md b/skills/workflow-start/references/view-completed.md index b9acc9b09..45c4d14c8 100644 --- a/skills/workflow-start/references/view-completed.md +++ b/skills/workflow-start/references/view-completed.md @@ -116,6 +116,18 @@ Cancellation removed the work unit's chunks from the knowledge base. Restore the Completed work units retain their chunks — no re-indexing needed. +Check for a stale `completed_at`: + +```bash +node .claude/skills/workflow-manifest/scripts/manifest.cjs exists {selected.name} completed_at +``` + +**If the output is `true`:** + +```bash +node .claude/skills/workflow-manifest/scripts/manifest.cjs delete {selected.name} completed_at +``` + > *Output the next fenced block as a code block:* ``` From 1fcc92cfb536fdb5bcafd9a65f8162751e164378 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Wed, 22 Apr 2026 23:32:47 +0100 Subject: [PATCH 43/78] fix(knowledge): --help/-h/help write usage to stdout with exit 0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit knowledge --help previously wrote USAGE to stderr and exited 1. Scripts probing the CLI treat that as a failure. Informational help should exit 0 by convention. Handled before arg parsing so the help paths are cheap and independent of other flag logic: if (rawArgs.includes('--help') || rawArgs.includes('-h') || rawArgs[0] === 'help') { process.stdout.write(USAGE + '\n'); process.exit(0); } No-args (user forgot a command) stays stderr + exit 1 — that is still a usage error. USAGE string updated with a '--help, -h' line. SKILL.md Invocation section notes both the help forms (stdout/0) and the no-args form (stderr/1). Verified all four paths empirically: --help, -h, help → stdout=1073B, stderr=0, exit 0. No-args → stdout=0, stderr=1073B, exit 1. --- skills/workflow-knowledge/SKILL.md | 2 + .../workflow-knowledge/scripts/knowledge.cjs | 94 ++++++++++--------- src/knowledge/index.js | 13 ++- 3 files changed, 62 insertions(+), 47 deletions(-) diff --git a/skills/workflow-knowledge/SKILL.md b/skills/workflow-knowledge/SKILL.md index 5f3f72180..6df60f026 100644 --- a/skills/workflow-knowledge/SKILL.md +++ b/skills/workflow-knowledge/SKILL.md @@ -33,6 +33,8 @@ node .claude/skills/workflow-knowledge/scripts/knowledge.cjs [args] Every skill that calls this must declare `Bash(node .claude/skills/workflow-knowledge/scripts/knowledge.cjs)` in its `allowed-tools` frontmatter. +To list commands and options, use `--help` / `-h` / `help` — writes usage to stdout, exits 0. 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t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,maxDepth:this.maxDepth,initialBufferSize:this.initialBufferSize,sortKeys:this.sortKeys,forceFloat32:this.forceFloat32,ignoreUndefined:this.ignoreUndefined,forceIntegerToFloat:this.forceIntegerToFloat})}reinitializeState(){this.pos=0}encodeSharedRef(e){if(this.entered)return this.clone().encodeSharedRef(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.subarray(0,this.pos)}finally{this.entered=!1}}encode(e){if(this.entered)return this.clone().encode(e);try{return this.entered=!0,this.reinitializeState(),this.doEncode(e,1),this.bytes.slice(0,this.pos)}finally{this.entered=!1}}doEncode(e,n){if(n>this.maxDepth)throw new Error(`Too deep objects in depth ${n}`);e==null?this.encodeNil():typeof e=="boolean"?this.encodeBoolean(e):typeof e=="number"?this.forceIntegerToFloat?this.encodeNumberAsFloat(e):this.encodeNumber(e):typeof 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hi(t,e){return new _e(e).encodeSharedRef(t)}var pi=v(()=>{Yn()});function $t(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var mi=v(()=>{});var ya,wa,Bt,gi=v(()=>{Ut();ya=16,wa=16,Bt=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=ya,n=wa){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=$n(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Hn,Qe,wi,xa,Jn,Ze,Xn,Sa,yi,Ia,G,Ft=v(()=>{mi();Ct();Lt();Ut();Gn();gi();Ot();Hn="array",Qe="map_key",wi="map_value",xa=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new $("The type of key must be string or number but "+typeof t)},Jn=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=Hn,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=Qe,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===Hn){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===Qe||e.type===wi){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},Ze=-1,Xn=new DataView(new ArrayBuffer(0)),Sa=new Uint8Array(Xn.buffer);try{Xn.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}yi=new RangeError("Insufficient data"),Ia=new Bt,G=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Xn;bytes=Sa;headByte=Ze;stack=new 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this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${$t(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let 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Available providers: ${rr.join(", ")}`);return t._api_key&&e==="openai"?new el({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function sl(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=et.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` -`,"utf8"),C.renameSync(r,t)}Xi.exports={DEFAULTS:qi,AVAILABLE_PROVIDERS:rr,PROVIDER_ENV_VARS:Ki,systemConfigPath:Gi,projectConfigPath:Yi,credentialsPath:Hi,readConfigFile:sr,loadConfig:nl,loadCredentials:ir,writeCredentials:tl,resolveApiKey:Ji,resolveProvider:rl,writeConfigFile:sl}});var mo=we((bh,po)=>{"use strict";var le=require("fs"),ue=require("path"),il=require("readline"),B=or(),cr=Qn(),{OpenAIProvider:ol}=Wt(),Zi="text-embedding-3-small",Qi=1536,eo=1536;function to(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. -`),process.exit(1))}function no(){let t=il.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` +`).trim()===""}$i.exports={chunk:Ka}});var tr=we((xh,zi)=>{"use strict";var Fi="stub";function Xa(t){let e=2166136261;for(let n=0;n>>0}function Za(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var er=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=Xa(n)||1,s=Za(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Vi="text-embedding-3-small",Wi="https://api.openai.com/v1/embeddings",nr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Vi,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions}),s=await this._fetch(r);if(!Array.isArray(s.data)||s.data.length!==e.length)throw new Error(`OpenAI embedBatch response length mismatch: requested ${e.length}, received ${s.data?s.data.length:0}`);return[...s.data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var C=require("fs"),et=require("path"),qi=require("os"),{StubProvider:Qa}=tr(),{OpenAIProvider:el}=Wt(),Ki={similarity_threshold:.8,decay_months:6},rr=["stub","openai"],Gi={openai:"OPENAI_API_KEY"};function Yi(){return et.join(qi.homedir(),".config","workflows","config.json")}function Hi(t){return et.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Ji(){return et.join(qi.homedir(),".config","workflows","credentials.json")}function sr(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function ir(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function tl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=ir(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=et.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{C.closeSync(a)}C.chmodSync(c,384),C.renameSync(c,t);try{C.chmodSync(t,384)}catch{}}function Xi(t,e){if(!t)return null;let n=Gi[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Ji(),s;try{s=ir(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function nl(t){let e=t&&t.systemPath||Yi(),n=t&&t.projectPath||Hi(),r=sr(e),s=sr(n),i=Object.assign({},Ki);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=Xi(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function rl(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Qa(n!=null?{dimensions:n}:void 0)}if(!rr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${rr.join(", ")}`);return t._api_key&&e==="openai"?new el({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function sl(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=et.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),C.renameSync(r,t)}Zi.exports={DEFAULTS:Ki,AVAILABLE_PROVIDERS:rr,PROVIDER_ENV_VARS:Gi,systemConfigPath:Yi,projectConfigPath:Hi,credentialsPath:Ji,readConfigFile:sr,loadConfig:nl,loadCredentials:ir,writeCredentials:tl,resolveApiKey:Xi,resolveProvider:rl,writeConfigFile:sl}});var go=we((bh,mo)=>{"use strict";var le=require("fs"),ue=require("path"),il=require("readline"),B=or(),cr=Qn(),{OpenAIProvider:ol}=Wt(),Qi="text-embedding-3-small",eo=1536,to=1536;function no(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function ro(){let t=il.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function jt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function ro(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let d of l.toString("utf8")){if(d===` +`),t.close(),process.exit(130)}),t}function jt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function so(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let d of l.toString("utf8")){if(d===` `||d==="\r")return c(),s.write(` `),n(o.trim());if(d===""){c(),s.write(` `),process.exit(130);return}if(d==="")return c(),s.write(` -`),n(o.trim());if(d==="\x7F"||d==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}d<" "||(o+=d,s.write("*"))}};r.on("data",a)})}function so({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function io(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function oo(){return{knowledge:{}}}function co(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function ao(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function qt({apiKey:t,model:e,dimensions:n}){let s=await new ol({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Kt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function lo(t){let e=B.systemConfigPath(),n=co(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(d==="\x7F"||d==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}d<" "||(o+=d,s.write("*"))}};r.on("data",a)})}function io({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function oo(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function co(){return{knowledge:{}}}function ao(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function lo(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function qt({apiKey:t,model:e,dimensions:n}){let s=await new ol({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Kt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function uo(t){let e=B.systemConfigPath(),n=ao(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let l=n.knowledge;if(process.stdout.write(` provider: ${l.provider==null?"(none \u2014 stub mode)":l.provider} @@ -51,12 +51,12 @@ Embedding provider: `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) `);let s;for(;s=(await jt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return B.writeConfigFile(e,io()),process.stdout.write(` +`);if(s==="skip")return B.writeConfigFile(e,oo()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await jt(t,"Embedding model",Zi),o=await jt(t,"Vector dimensions",String(Qi)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),B.writeConfigFile(e,so({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await jt(t,"Embedding model",Qi),o=await jt(t,"Vector dimensions",String(eo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),B.writeConfigFile(e,io({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let a=B.PROVIDER_ENV_VARS.openai;return await uo(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function uo(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`);let a=B.PROVIDER_ENV_VARS.openai;return await fo(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function fo(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... `);try{await qt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. `)}catch(c){let{message:a,hint:l}=Kt(c);process.stdout.write(`${a} @@ -85,7 +85,7 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await ro(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await so(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... @@ -95,7 +95,7 @@ Validating via a test embed... `),!await De(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}B.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function fo(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=ao(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}}async function ho(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=lo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await De(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -103,27 +103,27 @@ Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,oo()),process.stdout.write(` config.json written -`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:eo;if(!i.storeExists||i.fullyInitialised){let l=await cr.createStore(a);await cr.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) +`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,co()),process.stdout.write(` config.json written +`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:to;if(!i.storeExists||i.fullyInitialised){let l=await cr.createStore(a);await cr.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) `)}return(!i.metadataExists||i.fullyInitialised)&&(cr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function ho(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` +`)),{created:!0,provider:c,dimensions:a}}async function po(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function al(t,e,n){to();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=no(),i;try{process.stdout.write(` +`)}}async function al(t,e,n){no();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=ro(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await lo(s),await fo(s)}finally{s.close()}await ho(t,n),process.stdout.write(` +`),i=await uo(s),await ho(s)}finally{s.close()}await po(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}po.exports={cmdSetup:al,requireTTY:to,createPrompter:no,ask:jt,askYesNo:De,askSecret:ro,buildSystemConfigOpenAI:so,buildSystemConfigStub:io,buildProjectConfigEmpty:oo,detectSystemConfig:co,detectProjectInit:ao,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:uo,runSystemConfigStep:lo,runProjectInitStep:fo,runInitialIndexStep:ho,KEYWORD_ONLY_DIMENSIONS:eo,OPENAI_DEFAULT_MODEL:Zi,OPENAI_DEFAULT_DIMENSIONS:Qi}});var E=require("fs"),z=require("path"),k=Qn(),xo=$i(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Wt(),me=or(),So=mo(),dr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}mo.exports={cmdSetup:al,requireTTY:no,createPrompter:ro,ask:jt,askYesNo:De,askSecret:so,buildSystemConfigOpenAI:io,buildSystemConfigStub:oo,buildProjectConfigEmpty:co,detectSystemConfig:ao,detectProjectInit:lo,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:fo,runSystemConfigStep:uo,runProjectInitStep:ho,runInitialIndexStep:po,KEYWORD_ONLY_DIMENSIONS:to,OPENAI_DEFAULT_MODEL:Qi,OPENAI_DEFAULT_DIMENSIONS:eo}});var E=require("fs"),z=require("path"),k=Qn(),xo=Bi(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Wt(),me=or(),So=go(),fr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,lr=10,fr=1536,go=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function Io(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,ur=10,hr=1536,yo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function Io(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -148,28 +148,29 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results - --dry-run Preview without making changes`;function Z(){return z.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return z.join(Z(),"store.msp")}function q(){return z.join(Z(),"metadata.json")}function se(){return z.join(Z(),".lock")}function hl(t){return new Promise(e=>setTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;isetTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;imr(s,o,n,r),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await vo(n,r,fl)}async function mr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=xo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. 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Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. 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Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,u);let _=E.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function Me(t){let{execFileSync:e}=require("child_process");return e("node",[dl,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function tt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} +`)}async function Ao(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function yr(){let t=[],e;try{let n=Me(["list"]);e=JSON.parse(n)}catch(n){return tt("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of fr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Me(["resolve",`${r}.${s}.${o}`]).trim();l&&E.existsSync(z.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){tt(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Yt(t,e,n){let r=yr(),s=Z(),i=Q(),o=q();if(E.existsSync(s)||E.mkdirSync(s,{recursive:!0}),E.existsSync(o)){let u=k.readMetadata(o);mr(u,e,n)}let c=null;E.existsSync(i)&&(c=await k.loadStore(i));let a=0,l=0,d=0;for(let u of r){if(c&&await Ao(c,u.workUnit,u.phase,u.topic)){d++;continue}try{let f={workUnit:u.workUnit,phase:u.phase,topic:u.topic},h=await rt(()=>gr(u.file,f,e,n),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexing ${u.file}... ${h} chunks `),a++,l+=h,E.existsSync(i)&&(c=await k.loadStore(i))}catch(f){await Eo(u.file,f.message),process.stderr.write(`Failed to index ${u.file} after 3 attempts: ${f.message}. 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Last error: ${o.error} +`)}async function Eo(t,e){let n=q(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Gt(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function vo(t,e,n){let r=q();if(!E.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=ur){process.stderr.write(`Pending item ${o.file} exceeded ${ur} attempts \u2014 evicting. Last error: ${o.error} `),await Gt(o.file);continue}let c=z.resolve(o.file);if(!E.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. -`),await Gt(o.file);continue}let a;try{a=hr(o.file)}catch{await Gt(o.file);continue}try{await rt(()=>mr(o.file,a,t,e),{maxAttempts:3,backoff:nt}),await Gt(o.file)}catch(l){await Eo(o.file,l.message)}}}var ur=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function ko(t,e){let n=q(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function wo(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function To(){let t=q();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=ur){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${ur} attempts \u2014 evicting. +`),await Gt(o.file);continue}let a;try{a=pr(o.file)}catch{await Gt(o.file);continue}try{await rt(()=>gr(o.file,a,t,e),{maxAttempts:3,backoff:nt}),await Gt(o.file)}catch(l){await Eo(o.file,l.message)}}}var dr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function ko(t,e){let n=q(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function wo(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function To(){let t=q();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=dr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${dr} attempts \u2014 evicting. `),await wo(r);continue}try{await _o({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. -`),await wo(r)}catch(s){try{await ko({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function _o(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var gl={high:4,medium:3,"low-medium":2,low:1};function yl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function wl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var ar={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},xl=.1;function Sl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=xl);let c=gl[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Il(t){let e=[];for(let n of t)(!n.field||!ar[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(ar).join(", ")} +`),await wo(r)}catch(s){try{await ko({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function _o(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var gl={high:4,medium:3,"low-medium":2,low:1};function yl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function wl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var lr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},xl=.1;function Sl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=xl);let c=gl[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Il(t){let e=[];for(let n of t)(!n.field||!lr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(lr).join(", ")} `),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value -`),process.exit(1)),e.push({field:ar[n.field],value:n.value});return e}function bl(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new U(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. +`),process.exit(1)),e.push({field:lr[n.field],value:n.value});return e}function bl(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new U(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new U(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} @@ -186,15 +187,15 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `);return}process.stdout.write(`ready `)}async function vl(){let t=Z(),e=Q(),n=q(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!E.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await k.loadStore(e),i=await k.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let d=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${d} KB`),E.existsSync(n)){let p=k.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${lr}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${ge(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${ur})`)}let y;try{y=me.loadConfig()}catch{y=null}if(y){let w=me.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let u=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),E.existsSync(z.resolve(p.source_file))||u.push(p.source_file));if(u.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${u.length} files`);for(let p of u)r.push(` ${p}`)}try{let p=gr(),y=[];for(let w of p)await Ao(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} +`);return}let s=await k.loadStore(e),i=await k.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let d=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${d} KB`),E.existsSync(n)){let p=k.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${ur}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${ge(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${dr})`)}let y;try{y=me.loadConfig()}catch{y=null}if(y){let w=me.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let u=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),E.existsSync(z.resolve(p.source_file))||u.push(p.source_file));if(u.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${u.length} files`);for(let p of u)r.push(` ${p}`)}try{let p=yr(),y=[];for(let w of p)await Ao(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} `)}let h=[],m=null;try{m=JSON.parse(Me(["list"]))}catch(p){tt("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` `)}async function kl(t,e,n,r){let s=Q(),i=q(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. Type 'rebuild' to confirm: `),await Tl()!=="rebuild"&&(process.stderr.write(`Aborted. -`),process.exit(1)),gr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +`),process.exit(1)),yr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1));let l=s+".bak",d=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,d);let u=r?r.dimensions():n&&n.dimensions||fr,f=await k.createStore(u);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`),process.exit(1));let l=s+".bak",d=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,d);let u=r?r.dimensions():n&&n.dimensions||hr,f=await k.createStore(u);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. `);try{await Yt(e,n,r)}catch(u){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(d)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(d,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. `)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. Previous index is at: ${l} @@ -213,10 +214,11 @@ Rename them back manually to recover. Rollback error: ${f.message} `)+` `);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),x=new Set;for(let p of h){let y=`${p.work_unit}|${p.phase}|${p.topic}`;x.has(y)||(x.add(y),await k.removeByIdentity(g,p))}await k.saveStore(g,r)});let S=[];S.push(`Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)S.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(S.join(` `)+` -`)}async function Do(){let t=process.argv.slice(2),{positional:e,flags:n,boosts:r}=Io(t),s=e[0],i=e.slice(1),o=bo(n,r);s||(process.stderr.write(yo+` +`)}async function Do(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(ar+` +`),process.exit(0));let{positional:e,flags:n,boosts:r}=Io(t),s=e[0],i=e.slice(1),o=bo(n,r);s||(process.stderr.write(ar+` `),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await ml(i,o,c,a);break;case"query":await Al(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await vl();break;case"remove":await _l(i,o,c,a);break;case"compact":await Nl(i,o,c,a);break;case"rebuild":await kl(i,o,c,a);break;case"setup":await So.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". -${yo} -`),process.exit(1)}}module.exports={parseArgs:Io,buildOptions:bo,deriveIdentity:hr,resolveProviderState:pr,withRetry:rt,UserError:U,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:xo,config:me,setup:So,knowledgeDir:Z,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:dr,KEYWORD_ONLY_DIMENSIONS:fr};require.main===module&&Do().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +${ar} +`),process.exit(1)}}module.exports={parseArgs:Io,buildOptions:bo,deriveIdentity:pr,resolveProviderState:mr,withRetry:rt,UserError:U,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:xo,config:me,setup:So,knowledgeDir:Z,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:fr,KEYWORD_ONLY_DIMENSIONS:hr};require.main===module&&Do().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index e4af1d2b6..cf9adf8f4 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -171,7 +171,8 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results - --dry-run Preview without making changes`; + --dry-run Preview without making changes + --help, -h Show this usage and exit 0`; // --------------------------------------------------------------------------- // Path helpers @@ -1946,6 +1947,16 @@ async function cmdCompact(_args, options, cfg) { async function main() { const rawArgs = process.argv.slice(2); + + // Informational help: --help / -h / `help` subcommand. Writes USAGE to + // stdout and exits 0 so scripts can probe the CLI without treating + // help as a failure. `knowledge` with no args is still an error — + // the user forgot a command (stderr, exit 1, handled below). + if (rawArgs.includes('--help') || rawArgs.includes('-h') || rawArgs[0] === 'help') { + process.stdout.write(USAGE + '\n'); + process.exit(0); + } + const { positional, flags, boosts } = parseArgs(rawArgs); const command = positional[0]; const commandArgs = positional.slice(1); From 223922805fdd6ae9d35427bf482df00c25aeed36 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Thu, 23 Apr 2026 07:44:25 +0100 Subject: [PATCH 44/78] fix(knowledge): rebuild abort renders on its own line cmdRebuild's abort message wrote 'Aborted.\n' with no leading newline, so on an EOF-without-newline at the prompt the message collided with whatever the user had typed. Added a leading newline. Exit code stays 1 (already correct). Purely cosmetic. --- skills/workflow-knowledge/scripts/knowledge.cjs | 3 ++- src/knowledge/index.js | 4 +++- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 34cee06d5..3f34e93e5 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -192,7 +192,8 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `)+` `)}async function kl(t,e,n,r){let s=Q(),i=q(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. -Type 'rebuild' to confirm: `),await Tl()!=="rebuild"&&(process.stderr.write(`Aborted. +Type 'rebuild' to confirm: `),await Tl()!=="rebuild"&&(process.stderr.write(` +Aborted. `),process.exit(1)),yr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) `),process.exit(1));let l=s+".bak",d=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,d);let u=r?r.dimensions():n&&n.dimensions||hr,f=await k.createStore(u);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. diff --git a/src/knowledge/index.js b/src/knowledge/index.js index cf9adf8f4..51ecaf3ed 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1580,7 +1580,9 @@ async function cmdRebuild(_args, options, cfg, provider) { const input = await readStdinLine(); if (input !== 'rebuild') { - process.stderr.write('Aborted.\n'); + // Leading newline so the message doesn't run into whatever the user + // typed at the prompt line. + process.stderr.write('\nAborted.\n'); process.exit(1); } From 1e40f77ae5a1e641892fe5e66e3a6328142497a3 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Sat, 25 Apr 2026 16:31:39 +0100 Subject: [PATCH 45/78] feat(scoping): add Contextual Query step + fix pre-existing resume routing MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Scoping was the only exploratory phase missing a structured Contextual Query step. knowledge-usage.md Section E explicitly invites scoping to 'query throughout' (same posture as discussion/investigation), and the existing Step 2 nudge says 'query the knowledge base while gathering context' — but with no structural query step, the prompt was harder for Claude to action. Added Step 3 between Gather Context and Complexity Check, modelled on workflow-investigation-process Step 4. Subsequent steps renumbered 3→4, 4→5, 5→6, 6→7, 7→8. Also fixed a pre-existing bug in Step 0's resume routing: when a spec existed but the plan was incomplete, the comment said 'resume from format selection' but the link routed to Step 1 (Knowledge Usage), not the format-selection step (was Step 5, now Step 6). Updated the link to actually go to format selection. No external skill references the scoping step numbers — confirmed via grep across skills/. Markdown-only change. --- skills/workflow-scoping-process/SKILL.md | 43 ++++++++++++++++++------ 1 file changed, 32 insertions(+), 11 deletions(-) diff --git a/skills/workflow-scoping-process/SKILL.md b/skills/workflow-scoping-process/SKILL.md index 246b484fc..1c298ca40 100644 --- a/skills/workflow-scoping-process/SKILL.md +++ b/skills/workflow-scoping-process/SKILL.md @@ -89,11 +89,11 @@ node .claude/skills/workflow-manifest/scripts/manifest.cjs init-phase {work_unit node .claude/skills/workflow-manifest/scripts/manifest.cjs set {work_unit}.scoping.{topic} status completed ``` -→ Proceed to **Step 7**. +→ Proceed to **Step 8**. **Otherwise:** -→ Proceed to **Step 1** (spec exists but plan is incomplete — resume from format selection). +→ Proceed to **Step 6** (spec exists but plan is incomplete — resume from format selection). #### If specification does not exist @@ -145,7 +145,28 @@ Load **[gather-context.md](references/gather-context.md)** and follow its instru --- -## Step 3: Complexity Check +## Step 3: Contextual Query + +> *Output the next fenced block as a code block:* + +``` +── Contextual Query ───────────────────────────── +``` + +> *Output the next fenced block as markdown (not a code block):* + +``` +> Checking the knowledge base for prior discussions, investigations, +> or specs that touch the area being changed. +``` + +Load **[contextual-query.md](../workflow-knowledge/references/contextual-query.md)** and follow its instructions as written. + +→ Proceed to **Step 4**. + +--- + +## Step 4: Complexity Check > *Output the next fenced block as a code block:* @@ -162,11 +183,11 @@ Load **[gather-context.md](references/gather-context.md)** and follow its instru Load **[complexity-check.md](references/complexity-check.md)** and follow its instructions as written. -→ Proceed to **Step 4**. +→ Proceed to **Step 5**. --- -## Step 4: Write Specification +## Step 5: Write Specification > *Output the next fenced block as a code block:* @@ -183,11 +204,11 @@ Load **[complexity-check.md](references/complexity-check.md)** and follow its in Load **[write-specification.md](references/write-specification.md)** and follow its instructions as written. -→ Proceed to **Step 5**. +→ Proceed to **Step 6**. --- -## Step 5: Select Output Format +## Step 6: Select Output Format > *Output the next fenced block as a code block:* @@ -203,11 +224,11 @@ Load **[write-specification.md](references/write-specification.md)** and follow Load **[select-format.md](references/select-format.md)** and follow its instructions as written. -→ Proceed to **Step 6**. +→ Proceed to **Step 7**. --- -## Step 6: Write Tasks +## Step 7: Write Tasks > *Output the next fenced block as a code block:* @@ -224,11 +245,11 @@ Load **[select-format.md](references/select-format.md)** and follow its instruct Load **[write-tasks.md](references/write-tasks.md)** and follow its instructions as written. -→ Proceed to **Step 7**. +→ Proceed to **Step 8**. --- -## Step 7: Conclude Scoping +## Step 8: Conclude Scoping > *Output the next fenced block as a code block:* From e09ad802ef613be025952f5cb607d92e988b08b7 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Sat, 25 Apr 2026 16:53:49 +0100 Subject: [PATCH 46/78] test(knowledge): cover withRetry programming-error short-circuit MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit withRetry skips retry for TypeError, ReferenceError, SyntaxError, RangeError, and UserError — the guard added incrementally across deferred-issue #9 (commit f9844768), Important #7's UserError introduction, and the RangeError addition. Behaviour was untested: a future refactor reversing the guard would burn 7s of retry budget on permanent failures with no test catching it. Five new cases in test-knowledge-retry.cjs, one per error class. Each throws the specific type, asserts exactly one call and the original class survives. Confirmed all five fail on pre-guard code (seen 'actual: 3, expected: 1' — 3 retries instead of 1). 11/11 retry tests now pass. --- tests/scripts/test-knowledge-retry.cjs | 52 +++++++++++++++++++++++++- 1 file changed, 51 insertions(+), 1 deletion(-) diff --git a/tests/scripts/test-knowledge-retry.cjs b/tests/scripts/test-knowledge-retry.cjs index 63a008c66..29ac46438 100644 --- a/tests/scripts/test-knowledge-retry.cjs +++ b/tests/scripts/test-knowledge-retry.cjs @@ -3,7 +3,7 @@ const { describe, it } = require('node:test'); const assert = require('node:assert'); -const { withRetry } = require('../../src/knowledge/index'); +const { withRetry, UserError } = require('../../src/knowledge/index'); describe('withRetry', () => { it('succeeds on first attempt', async () => { @@ -69,4 +69,54 @@ describe('withRetry', () => { assert.strictEqual(result, 42); assert.strictEqual(calls, 1); }); + + // Permanent-failure short-circuit: programming errors and UserError surface + // immediately on the first attempt rather than burning the retry budget. + // Each test asserts exactly one call (no retries) and that the original + // error class survives. + + it('does not retry TypeError', async () => { + let calls = 0; + await assert.rejects( + () => withRetry(async () => { calls++; throw new TypeError('typo'); }, { maxAttempts: 3, backoff: [1, 1, 1] }), + (err) => err instanceof TypeError && /typo/.test(err.message) + ); + assert.strictEqual(calls, 1); + }); + + it('does not retry ReferenceError', async () => { + let calls = 0; + await assert.rejects( + () => withRetry(async () => { calls++; throw new ReferenceError('missing'); }, { maxAttempts: 3, backoff: [1, 1, 1] }), + (err) => err instanceof ReferenceError + ); + assert.strictEqual(calls, 1); + }); + + it('does not retry SyntaxError', async () => { + let calls = 0; + await assert.rejects( + () => withRetry(async () => { calls++; throw new SyntaxError('bad'); }, { maxAttempts: 3, backoff: [1, 1, 1] }), + (err) => err instanceof SyntaxError + ); + assert.strictEqual(calls, 1); + }); + + it('does not retry RangeError', async () => { + let calls = 0; + await assert.rejects( + () => withRetry(async () => { calls++; throw new RangeError('out'); }, { maxAttempts: 3, backoff: [1, 1, 1] }), + (err) => err instanceof RangeError + ); + assert.strictEqual(calls, 1); + }); + + it('does not retry UserError', async () => { + let calls = 0; + await assert.rejects( + () => withRetry(async () => { calls++; throw new UserError('bad input'); }, { maxAttempts: 3, backoff: [1, 1, 1] }), + (err) => err instanceof UserError && /bad input/.test(err.message) + ); + assert.strictEqual(calls, 1); + }); }); From 6f6d699ce9c7ddbd00a64ce9520cbcc4d10797e4 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Sat, 25 Apr 2026 17:47:41 +0100 Subject: [PATCH 47/78] revert(knowledge): remove unreachable searchHybrid fulltext fallback MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Empirical probing of Orama's hybrid mode shows the deferred-issue #15 concern doesn't manifest. With a flat or poor-quality vector and a tight similarity threshold (e.g. 0.99), hybrid still returns BM25- driven hits — text matches come through regardless. The only way to get zero hybrid hits is when the term itself doesn't match anything, at which point a fulltext fallback also returns zero. The defensive fallback added in commit 33303da1 was therefore dead code: in every realistic scenario the original hybrid call already returns the right thing. Removing it. deferred-issues.md #15 reclassified RESOLVED → WITHDRAWN with the empirical evidence and a pointer to the brief commit history. kb-smoke.cjs: relabelled the previous '#15 fallback' check. The assertion still holds — hybrid surfaces BM25 hits even with weak vector matches — but it now describes what's actually being proven (Orama hybrid handles this natively) rather than the now-removed fallback path. 168/168 CLI + smoke + store + integration green. --- knowledge-base/deferred-issues.md | 6 +- .../workflow-knowledge/scripts/knowledge.cjs | 56 +++++++++---------- src/knowledge/store.js | 10 ---- tests/scripts/kb-smoke.cjs | 9 ++- 4 files changed, 37 insertions(+), 44 deletions(-) diff --git a/knowledge-base/deferred-issues.md b/knowledge-base/deferred-issues.md index f0cd8147b..39bffbebb 100644 --- a/knowledge-base/deferred-issues.md +++ b/knowledge-base/deferred-issues.md @@ -98,11 +98,11 @@ Items below marked **RESOLVED** were addressed during the pre-merge cleanup pass **Description:** `Object.assign`-style merge only copies defined values; setting project `model: undefined` cannot unset a system `model: "x"` default. **Mitigation:** Treat explicit `null` as unset sentinel in the merge. -### 15. `searchHybrid` similarity threshold may drop strong text-only matches — Low — **RESOLVED** +### 15. `searchHybrid` similarity threshold may drop strong text-only matches — Low — **WITHDRAWN** **Location:** `src/knowledge/store.js` `searchHybrid`. -**Description:** Orama applies `similarity` as a filter on hybrid results; zero vector matches can mask strong BM25 matches. -**Mitigation:** Phase 5+ retrieval tuning — fall back to text-only if hybrid returns 0. +**Description:** Theoretical concern that Orama applies `similarity` as a filter on hybrid results; zero vector matches could mask strong BM25 matches. +**Why withdrawn:** Empirical probing of Orama's hybrid mode shows the concern doesn't manifest. With a flat/poor vector and `similarity: 0.99`, hybrid still returns BM25-driven hits (text matches come through regardless of similarity post-filter). The only way to get zero hybrid hits is when the term itself doesn't match — at which point a text-only fallback also returns zero. A defensive fulltext fallback was briefly added in commit `33303da1` then removed once probing confirmed it was unreachable. Orama's hybrid implementation already does the right thing. ### 16. `cmdRebuild` stdin left in flowing mode — Low — **RESOLVED** diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 3f34e93e5..44c330b5e 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var Xt=Object.defineProperty;var Mo=Object.getOwnPropertyDescriptor;var No=Object.getOwnPropertyNames;var Uo=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var we=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),te=(t,e)=>{for(var n in e)Xt(t,n,{get:e[n],enumerable:!0})},Oo=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of No(e))!Uo.call(t,s)&&s!==n&&Xt(t,s,{get:()=>e[s],enumerable:!(r=Mo(e,s))||r.enumerable});return t};var wr=t=>Oo(Xt({},"__esModule",{value:!0}),t);function Ir(t){return t!==void 0&&Ue.includes(t)?xr[t]:void 0}var 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et.join(qi.homedir(),".config","workflows","credentials.json")}function sr(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. 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Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function tl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=ir(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=et.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` +`).trim()===""}$i.exports={chunk:Ka}});var tr=we((xh,zi)=>{"use strict";var Fi="stub";function Xa(t){let e=2166136261;for(let n=0;n>>0}function Za(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var er=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=Xa(n)||1,s=Za(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Vi="text-embedding-3-small",Wi="https://api.openai.com/v1/embeddings",nr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Vi,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions}),s=await this._fetch(r);if(!Array.isArray(s.data)||s.data.length!==e.length)throw new Error(`OpenAI embedBatch response length mismatch: requested ${e.length}, received ${s.data?s.data.length:0}`);return[...s.data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var C=require("fs"),et=require("path"),qi=require("os"),{StubProvider:Qa}=tr(),{OpenAIProvider:el}=Vt(),Ki={similarity_threshold:.8,decay_months:6},rr=["stub","openai"],Gi={openai:"OPENAI_API_KEY"};function Yi(){return et.join(qi.homedir(),".config","workflows","config.json")}function Hi(t){return et.join(t||process.cwd(),".workflows",".knowledge","config.json")}function Ji(){return et.join(qi.homedir(),".config","workflows","credentials.json")}function sr(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function ir(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function tl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=ir(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=et.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` `)}finally{C.closeSync(a)}C.chmodSync(c,384),C.renameSync(c,t);try{C.chmodSync(t,384)}catch{}}function Xi(t,e){if(!t)return null;let n=Gi[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Ji(),s;try{s=ir(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function nl(t){let e=t&&t.systemPath||Yi(),n=t&&t.projectPath||Hi(),r=sr(e),s=sr(n),i=Object.assign({},Ki);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=Xi(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function rl(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new Qa(n!=null?{dimensions:n}:void 0)}if(!rr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${rr.join(", ")}`);return t._api_key&&e==="openai"?new el({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function sl(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=et.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` -`,"utf8"),C.renameSync(r,t)}Zi.exports={DEFAULTS:Ki,AVAILABLE_PROVIDERS:rr,PROVIDER_ENV_VARS:Gi,systemConfigPath:Yi,projectConfigPath:Hi,credentialsPath:Ji,readConfigFile:sr,loadConfig:nl,loadCredentials:ir,writeCredentials:tl,resolveApiKey:Xi,resolveProvider:rl,writeConfigFile:sl}});var go=we((bh,mo)=>{"use strict";var le=require("fs"),ue=require("path"),il=require("readline"),B=or(),cr=Qn(),{OpenAIProvider:ol}=Wt(),Qi="text-embedding-3-small",eo=1536,to=1536;function no(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`,"utf8"),C.renameSync(r,t)}Zi.exports={DEFAULTS:Ki,AVAILABLE_PROVIDERS:rr,PROVIDER_ENV_VARS:Gi,systemConfigPath:Yi,projectConfigPath:Hi,credentialsPath:Ji,readConfigFile:sr,loadConfig:nl,loadCredentials:ir,writeCredentials:tl,resolveApiKey:Xi,resolveProvider:rl,writeConfigFile:sl}});var go=we((bh,mo)=>{"use strict";var le=require("fs"),ue=require("path"),il=require("readline"),B=or(),cr=Qn(),{OpenAIProvider:ol}=Vt(),Qi="text-embedding-3-small",eo=1536,to=1536;function no(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function ro(){let t=il.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function jt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function so(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let d of l.toString("utf8")){if(d===` +`),t.close(),process.exit(130)}),t}function Wt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function so(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let d of l.toString("utf8")){if(d===` `||d==="\r")return c(),s.write(` `),n(o.trim());if(d===""){c(),s.write(` `),process.exit(130);return}if(d==="")return c(),s.write(` -`),n(o.trim());if(d==="\x7F"||d==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}d<" "||(o+=d,s.write("*"))}};r.on("data",a)})}function io({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function oo(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function co(){return{knowledge:{}}}function ao(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function lo(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function qt({apiKey:t,model:e,dimensions:n}){let s=await new ol({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Kt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function uo(t){let e=B.systemConfigPath(),n=ao(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(d==="\x7F"||d==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}d<" "||(o+=d,s.write("*"))}};r.on("data",a)})}function io({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function oo(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function co(){return{knowledge:{}}}function ao(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function lo(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function jt({apiKey:t,model:e,dimensions:n}){let s=await new ol({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function qt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function uo(t){let e=B.systemConfigPath(),n=ao(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let l=n.knowledge;if(process.stdout.write(` provider: ${l.provider==null?"(none \u2014 stub mode)":l.provider} @@ -50,22 +50,22 @@ Embedding provider: `),process.stdout.write(` openai \u2014 OpenAI embeddings API (requires an API key) `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) -`);let s;for(;s=(await jt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". +`);let s;for(;s=(await Wt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". `);if(s==="skip")return B.writeConfigFile(e,oo()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await jt(t,"Embedding model",Qi),o=await jt(t,"Vector dimensions",String(eo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await Wt(t,"Embedding model",Qi),o=await Wt(t,"Vector dimensions",String(eo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. `),process.exit(1)),B.writeConfigFile(e,io({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} `);let a=B.PROVIDER_ENV_VARS.openai;return await fo(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function fo(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... -`);try{await qt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. -`)}catch(c){let{message:a,hint:l}=Kt(c);process.stdout.write(`${a} +`);try{await jt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. +`)}catch(c){let{message:a,hint:l}=qt(c);process.stdout.write(`${a} ${l} `),process.stdout.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. Setup will continue \u2014 indexing will queue until the key is corrected. `)}return}let o=B.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` Found an existing API key in ${s} \u2014 validating via a test embed... -`);try{await qt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. -`);return}catch(c){let{message:a,hint:l}=Kt(c);if(process.stdout.write(`${a} +`);try{await jt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. +`);return}catch(c){let{message:a,hint:l}=qt(c);if(process.stdout.write(`${a} ${l} `),!await De(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. @@ -89,7 +89,7 @@ stored key, so you can swap it without editing the file. `);continue}process.stdout.write(` Validating via a test embed... -`);try{await qt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=Kt(o);if(process.stdout.write(`${c} +`);try{await jt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=qt(o);if(process.stdout.write(`${c} ${a} `),!await De(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. @@ -120,7 +120,7 @@ Knowledge base setup Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}mo.exports={cmdSetup:al,requireTTY:no,createPrompter:ro,ask:jt,askYesNo:De,askSecret:so,buildSystemConfigOpenAI:io,buildSystemConfigStub:oo,buildProjectConfigEmpty:co,detectSystemConfig:ao,detectProjectInit:lo,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:fo,runSystemConfigStep:uo,runProjectInitStep:ho,runInitialIndexStep:po,KEYWORD_ONLY_DIMENSIONS:to,OPENAI_DEFAULT_MODEL:Qi,OPENAI_DEFAULT_DIMENSIONS:eo}});var E=require("fs"),z=require("path"),k=Qn(),xo=Bi(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Wt(),me=or(),So=go(),fr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}mo.exports={cmdSetup:al,requireTTY:no,createPrompter:ro,ask:Wt,askYesNo:De,askSecret:so,buildSystemConfigOpenAI:io,buildSystemConfigStub:oo,buildProjectConfigEmpty:co,detectSystemConfig:ao,detectProjectInit:lo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:fo,runSystemConfigStep:uo,runProjectInitStep:ho,runInitialIndexStep:po,KEYWORD_ONLY_DIMENSIONS:to,OPENAI_DEFAULT_MODEL:Qi,OPENAI_DEFAULT_DIMENSIONS:eo}});var E=require("fs"),z=require("path"),k=Qn(),xo=Bi(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Vt(),me=or(),So=go(),fr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,ur=10,hr=1536,yo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function Io(t){let e=[],n={},r=[],s=0;for(;s [options] @@ -149,7 +149,7 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results --dry-run Preview without making changes - --help, -h Show this usage and exit 0`;function Z(){return z.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return z.join(Z(),"store.msp")}function q(){return z.join(Z(),"metadata.json")}function se(){return z.join(Z(),".lock")}function hl(t){return new Promise(e=>setTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;isetTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;igr(s,o,n,r),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await vo(n,r,fl)}async function gr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=xo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let d=Z(),u=Q(),f=q(),h=se();E.existsSync(d)||E.mkdirSync(d,{recursive:!0});let m,S,g=E.existsSync(u),x=E.existsSync(f);g&&(m=await k.loadStore(u)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=mr(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||hr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let ee=String(M+1).padStart(3,"0"),Y={id:`${e.workUnit}-${e.phase}-${e.topic}-${ee}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(Y.embedding=w[M]),Y});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(u):E.existsSync(u)&&(m=await k.loadStore(u)),p==="full"&&E.existsSync(f)){let M=k.readMetadata(f),ee=y.dimensions();if(M.provider&&M.dimensions!==ee)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,u);let _=E.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function Me(t){let{execFileSync:e}=require("child_process");return e("node",[dl,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function tt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} -`)}async function Ao(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function yr(){let t=[],e;try{let n=Me(["list"]);e=JSON.parse(n)}catch(n){return tt("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of fr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Me(["resolve",`${r}.${s}.${o}`]).trim();l&&E.existsSync(z.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){tt(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Yt(t,e,n){let r=yr(),s=Z(),i=Q(),o=q();if(E.existsSync(s)||E.mkdirSync(s,{recursive:!0}),E.existsSync(o)){let u=k.readMetadata(o);mr(u,e,n)}let c=null;E.existsSync(i)&&(c=await k.loadStore(i));let a=0,l=0,d=0;for(let u of r){if(c&&await Ao(c,u.workUnit,u.phase,u.topic)){d++;continue}try{let f={workUnit:u.workUnit,phase:u.phase,topic:u.topic},h=await rt(()=>gr(u.file,f,e,n),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexing ${u.file}... ${h} chunks +`),await vo(n,r,fl)}async function gr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=xo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let d=Z(),u=Q(),f=j(),h=se();E.existsSync(d)||E.mkdirSync(d,{recursive:!0});let m,S,g=E.existsSync(u),x=E.existsSync(f);g&&(m=await k.loadStore(u)),x&&(S=k.readMetadata(f),Array.isArray(S.pending)||(S.pending=[]));let p,y;if(S){let _=mr(S,n,r);p=_.mode,y=_.provider}else r?(p="full",y=r):(p="keyword-only",y=null);if(!m){let _=y?y.dimensions():n.dimensions||hr;m=await k.createStore(_)}let w=null;if(p==="full"&&y&&l.length>0){let _=l.map(M=>M.content);w=await y.embedBatch(_)}let I=Date.now(),T=o.confidence||"medium",D=l.map((_,M)=>{let ee=String(M+1).padStart(3,"0"),Y={id:`${e.workUnit}-${e.phase}-${e.topic}-${ee}`,content:_.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:I};return w&&(Y.embedding=w[M]),Y});return await k.withLock(h,async()=>{if(g?m=await k.loadStore(u):E.existsSync(u)&&(m=await k.loadStore(u)),p==="full"&&E.existsSync(f)){let M=k.readMetadata(f),ee=y.dimensions();if(M.provider&&M.dimensions!==ee)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(m,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of D)await k.insertDocument(m,M);await k.saveStore(m,u);let _=E.existsSync(f)?k.readMetadata(f):null;if(_)_.last_indexed=new Date().toISOString(),Array.isArray(_.pending)||(_.pending=[]),k.writeMetadata(f,_);else{let M={provider:y?n.provider:null,model:y?y.model():null,dimensions:y?y.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),D.length}function Me(t){let{execFileSync:e}=require("child_process");return e("node",[dl,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function tt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} +`)}async function Ao(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function yr(){let t=[],e;try{let n=Me(["list"]);e=JSON.parse(n)}catch(n){return tt("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of fr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Me(["resolve",`${r}.${s}.${o}`]).trim();l&&E.existsSync(z.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){tt(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Gt(t,e,n){let r=yr(),s=Z(),i=Q(),o=j();if(E.existsSync(s)||E.mkdirSync(s,{recursive:!0}),E.existsSync(o)){let u=k.readMetadata(o);mr(u,e,n)}let c=null;E.existsSync(i)&&(c=await k.loadStore(i));let a=0,l=0,d=0;for(let u of r){if(c&&await Ao(c,u.workUnit,u.phase,u.topic)){d++;continue}try{let f={workUnit:u.workUnit,phase:u.phase,topic:u.topic},h=await rt(()=>gr(u.file,f,e,n),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexing ${u.file}... ${h} chunks `),a++,l+=h,E.existsSync(i)&&(c=await k.loadStore(i))}catch(f){await Eo(u.file,f.message),process.stderr.write(`Failed to index ${u.file} after 3 attempts: ${f.message}. Added to pending queue. `),f.stack&&process.stderr.write(f.stack+` `)}}await vo(e,n,1/0),process.stdout.write(`Indexed ${a} files (${l} chunks). ${d} already indexed. -`)}async function Eo(t,e){let n=q(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Gt(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function vo(t,e,n){let r=q();if(!E.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=ur){process.stderr.write(`Pending item ${o.file} exceeded ${ur} attempts \u2014 evicting. Last error: ${o.error} -`),await Gt(o.file);continue}let c=z.resolve(o.file);if(!E.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. -`),await Gt(o.file);continue}let a;try{a=pr(o.file)}catch{await Gt(o.file);continue}try{await rt(()=>gr(o.file,a,t,e),{maxAttempts:3,backoff:nt}),await Gt(o.file)}catch(l){await Eo(o.file,l.message)}}}var dr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function ko(t,e){let n=q(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function wo(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function To(){let t=q();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=dr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${dr} attempts \u2014 evicting. +`)}async function Eo(t,e){let n=j(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Kt(t){let e=j(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function vo(t,e,n){let r=j();if(!E.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=ur){process.stderr.write(`Pending item ${o.file} exceeded ${ur} attempts \u2014 evicting. Last error: ${o.error} +`),await Kt(o.file);continue}let c=z.resolve(o.file);if(!E.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. +`),await Kt(o.file);continue}let a;try{a=pr(o.file)}catch{await Kt(o.file);continue}try{await rt(()=>gr(o.file,a,t,e),{maxAttempts:3,backoff:nt}),await Kt(o.file)}catch(l){await Eo(o.file,l.message)}}}var dr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function ko(t,e){let n=j(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function wo(t){let e=j(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function To(){let t=j();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=dr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${dr} attempts \u2014 evicting. `),await wo(r);continue}try{await _o({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. `),await wo(r)}catch(s){try{await ko({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function _o(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var gl={high:4,medium:3,"low-medium":2,low:1};function yl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function wl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var lr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},xl=.1;function Sl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=xl);let c=gl[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Il(t){let e=[];for(let n of t)(!n.field||!lr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(lr).join(", ")} `),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value @@ -175,7 +175,7 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new U(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function Al(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--work-unit ...] [--work-type ...] [--phase ...] [--topic ...] [--boost: ]... [--limit N] -`),process.exit(1));for(let I of t)if(typeof I!="string"||I.trim()==="")throw new U("Empty search term. `knowledge query` requires at least one non-empty positional term. If you intended to list everything indexed, use `knowledge status` instead.");let s=t,i=e.limit||10,o=Q(),c=q();if(!E.existsSync(o)){process.stdout.write(`[0 results] +`),process.exit(1));for(let I of t)if(typeof I!="string"||I.trim()==="")throw new U("Empty search term. `knowledge query` requires at least one non-empty positional term. If you intended to list everything indexed, use `knowledge status` instead.");let s=t,i=e.limit||10,o=Q(),c=j();if(!E.existsSync(o)){process.stdout.write(`[0 results] `);return}let a=await k.loadStore(o),l="keyword-only",d=null,u=null;E.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=k.readMetadata(c),h=bl(f,n,r);l=h.mode,d=h.provider,l==="keyword-only"?u="[keyword-only mode \u2014 configure embedding provider for semantic search]":l==="upgrade-available"&&(u="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let m={};if(e.phase){let I=e.phase.split(",").map(T=>T.trim());m.phase=I.length===1?{eq:I[0]}:{in:I}}if(e.workType){let I=e.workType.split(",").map(T=>T.trim());m.work_type=I.length===1?{eq:I[0]}:{in:I}}if(e.workUnit){let I=e.workUnit.split(",").map(T=>T.trim());m.work_unit=I.length===1?{eq:I[0]}:{in:I}}if(e.topic){let I=e.topic.split(",").map(T=>T.trim());m.topic=I.length===1?{eq:I[0]}:{in:I}}let S=n.similarity_threshold??.8,g=Object.keys(m).length>0?m:void 0,x=new Map;for(let I of s){let T;if(l==="full"&&d){let D=await rt(()=>d.embed(I),{maxAttempts:3,backoff:nt});T=await k.searchHybrid(a,{term:I,vector:D,where:g,limit:i*2,similarity:S})}else T=await k.searchFulltext(a,{term:I,where:g,limit:i*2});for(let D of T){let _=x.get(D.id);(!_||D.score>_.score)&&x.set(D.id,D)}}let p=Il(e.boosts),y=Sl(Array.from(x.values()),p);y.length>i&&(y=y.slice(0,i));let w=[];u&&w.push(u),w.push(`[${y.length} results]`);for(let I of y){w.push("");let T=wl(I.timestamp);w.push(`[${I.phase} | ${I.work_unit}/${I.topic} | ${I.confidence} | ${T}]`),w.push(I.content),w.push(`Source: ${I.source_file}`)}process.stdout.write(w.join(` `)+` `)}async function El(){let t=Z(),e=z.join(t,"config.json"),n=Q();if(!E.existsSync(t)){process.stdout.write(`not-ready @@ -185,19 +185,19 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `);return}if(!E.existsSync(n)){process.stdout.write(`not-ready `);return}try{await k.loadStore(n)}catch{process.stdout.write(`not-ready `);return}process.stdout.write(`ready -`)}async function vl(){let t=Z(),e=Q(),n=q(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!E.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` +`)}async function vl(){let t=Z(),e=Q(),n=j(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!E.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` `);return}let s=await k.loadStore(e),i=await k.searchFulltext(s,{term:"",limit:1e5});r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let d=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${d} KB`),E.existsSync(n)){let p=k.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${ur}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${ge(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${dr})`)}let y;try{y=me.loadConfig()}catch{y=null}if(y){let w=me.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let u=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),E.existsSync(z.resolve(p.source_file))||u.push(p.source_file));if(u.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${u.length} files`);for(let p of u)r.push(` ${p}`)}try{let p=yr(),y=[];for(let w of p)await Ao(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} `)}let h=[],m=null;try{m=JSON.parse(Me(["list"]))}catch(p){tt("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` -`)}async function kl(t,e,n,r){let s=Q(),i=q(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function kl(t,e,n,r){let s=Q(),i=j(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. Type 'rebuild' to confirm: `),await Tl()!=="rebuild"&&(process.stderr.write(` Aborted. `),process.exit(1)),yr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) `),process.exit(1));let l=s+".bak",d=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,d);let u=r?r.dimensions():n&&n.dimensions||hr,f=await k.createStore(u);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. -`);try{await Yt(e,n,r)}catch(u){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(d)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(d,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. +`);try{await Gt(e,n,r)}catch(u){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(d)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(d,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. `)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. Previous index is at: ${l} ${d} @@ -217,9 +217,9 @@ Rename them back manually to recover. Rollback error: ${f.message} `)+` `)}async function Do(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(ar+` `),process.exit(0));let{positional:e,flags:n,boosts:r}=Io(t),s=e[0],i=e.slice(1),o=bo(n,r);s||(process.stderr.write(ar+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await ml(i,o,c,a);break;case"query":await Al(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await vl();break;case"remove":await _l(i,o,c,a);break;case"compact":await Nl(i,o,c,a);break;case"rebuild":await kl(i,o,c,a);break;case"setup":await So.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await ml(i,o,c,a);break;case"query":await Al(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await vl();break;case"remove":await _l(i,o,c,a);break;case"compact":await Nl(i,o,c,a);break;case"rebuild":await kl(i,o,c,a);break;case"setup":await So.cmdSetup(Gt,i,o);break;default:process.stderr.write(`Unknown command "${s}". ${ar} -`),process.exit(1)}}module.exports={parseArgs:Io,buildOptions:bo,deriveIdentity:pr,resolveProviderState:mr,withRetry:rt,UserError:U,main:Do,cmdIndexBulk:Yt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:xo,config:me,setup:So,knowledgeDir:Z,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:fr,KEYWORD_ONLY_DIMENSIONS:hr};require.main===module&&Do().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +`),process.exit(1)}}module.exports={parseArgs:Io,buildOptions:bo,deriveIdentity:pr,resolveProviderState:mr,withRetry:rt,UserError:U,main:Do,cmdIndexBulk:Gt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:xo,config:me,setup:So,knowledgeDir:Z,storePath:Q,metadataPath:j,lockFilePath:se,INDEXED_PHASES:fr,KEYWORD_ONLY_DIMENSIONS:hr};require.main===module&&Do().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/store.js b/src/knowledge/store.js index ae1a94e41..cb52bb559 100644 --- a/src/knowledge/store.js +++ b/src/knowledge/store.js @@ -288,16 +288,6 @@ async function searchHybrid( if (typeof similarity === 'number') query.similarity = similarity; if (where && Object.keys(where).length > 0) query.where = where; const res = await orama.search(db, query); - // Orama applies `similarity` as a post-filter on hybrid results, so a - // query with zero good vector matches can mask a strong BM25 hit. Fall - // back to a text-only search before giving up so keyword matches aren't - // silently dropped (deferred-issue #15). - if (res.hits.length === 0) { - const fallback = { mode: 'fulltext', term, limit }; - if (where && Object.keys(where).length > 0) fallback.where = where; - const fallbackRes = await orama.search(db, fallback); - return fallbackRes.hits.map(normaliseHit); - } return res.hits.map(normaliseHit); } diff --git a/tests/scripts/kb-smoke.cjs b/tests/scripts/kb-smoke.cjs index d685d57df..bb27c66b5 100644 --- a/tests/scripts/kb-smoke.cjs +++ b/tests/scripts/kb-smoke.cjs @@ -81,15 +81,18 @@ async function main() { }); check('hybrid search returns results', hybRes.length > 0); - // Trigger the #15 fallback: term has matches but vector has none above threshold + // Hybrid with a flat/poor vector + tight similarity still returns BM25 + // hits — Orama's hybrid mode handles the "vector matches all weak" case + // natively without needing a fulltext fallback. (deferred-issue #15 + // concern was empirically not reproducible.) const gibberishVec = new Array(DIMS).fill(0.0001); - const fallbackRes = await searchHybrid(db, { + const hybStrictRes = await searchHybrid(db, { term: 'refresh', vector: gibberishVec, limit: 10, similarity: 0.99, }); - check('hybrid → fulltext fallback when no vector hits', fallbackRes.length > 0); + check('hybrid surfaces BM25 hits even with weak vector matches', hybStrictRes.length > 0); const removed = await removeByFilter(db, { work_unit: { eq: 'billing' } }); check('removeByFilter returned count > 0', removed > 0); From 4ff1c4227fb9517c44ca5244ae97b68595c7ed1b Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Sat, 25 Apr 2026 17:56:09 +0100 Subject: [PATCH 48/78] =?UTF-8?q?docs(knowledge):=20contextual-query=20?= =?UTF-8?q?=E2=80=94=20drop=20'single=20targeted'=20framing,=20show=20batc?= =?UTF-8?q?h=20example?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The reference contradicted itself. Opening prose said 'a single targeted query' / 'One query, one interpretation step', then later prose pointed at the batch idiom. The example showed only the single form. Skill files learn the shape from the example, so Claude defaulted to single-term queries even when the calling phase had multiple distinct angles to query. - Opening reframed: 'a focused query' / 'One invocation, one interpretation step' (covers both single and batch). - New paragraph naming when batch is appropriate (investigation has symptoms + subsystem; research/discussion/scoping usually have thinner starting context, single is fine). - Example block now shows both forms — single first, batch second with three positional placeholders. Prose only, single file. --- .../references/contextual-query.md | 12 ++++++++++-- 1 file changed, 10 insertions(+), 2 deletions(-) diff --git a/skills/workflow-knowledge/references/contextual-query.md b/skills/workflow-knowledge/references/contextual-query.md index 5db7179cc..905ad5423 100644 --- a/skills/workflow-knowledge/references/contextual-query.md +++ b/skills/workflow-knowledge/references/contextual-query.md @@ -4,9 +4,9 @@ --- -At the beginning of these phases, a single targeted query against the knowledge base catches prior work that might otherwise surface as a correction ten minutes into the session. One query, one interpretation step — if nothing comes back, proceed as normal. +At the beginning of these phases, a focused query against the knowledge base catches prior work that might otherwise surface as a correction ten minutes into the session. One invocation, one interpretation step — if nothing comes back, proceed as normal. -This is **not** a speculative dump. It is a focused check using the best context currently available. +This is **not** a speculative dump. It is a focused check using the best context currently available. When the starting context offers multiple distinct angles (e.g. investigation has both symptoms and a subsystem name), batch them in a single invocation rather than running them serially. ## A. Construct the query @@ -20,10 +20,18 @@ If the only context available is a topic name, construct the best descriptive qu Invoke the CLI with the constructed query (or queries). Use `--boost:work-unit {work_unit}` to bias results toward the current work unit without filtering out cross-work-unit context. Do not use hard filters (`--work-unit`, `--phase`, `--topic`, `--work-type`) unless you have a specific reason — this is meant to surface prior work broadly. +Single framing: + ``` node .claude/skills/workflow-knowledge/scripts/knowledge.cjs query "" --boost:work-unit {work_unit} ``` +Multiple framings (batch — one invocation, one merged result set): + +``` +node .claude/skills/workflow-knowledge/scripts/knowledge.cjs query "" "" "" --boost:work-unit {work_unit} +``` + #### If the command exits with a non-zero code Load **[knowledge-usage.md](knowledge-usage.md)** for **D. Query failure handling** and follow its instructions. When D returns: From d9e20aedc6fe9bbe1ebf070fbeaa2406fe882e57 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:20:36 +0100 Subject: [PATCH 49/78] docs(knowledge): log post-audit follow-ups for fresh agent MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Six-agent re-audit on this branch surfaced items that were not landed during the cleanup pass. Captures full context per item — file paths, line numbers, severity, fix shape, acceptance criteria — so a fresh agent can pick up without backreading the conversation. Items covered: - Pre-merge musts (#1-4): drift introduced by my own cleanup edits, including the view-completed.md double-nested bold I tried multiple times to fix and bailed. - Should-fixes (#5-7): real correctness/UX issues outside the cleanup scope (OpenAI auth retry, setup write-before-validate, partial-state recovery). - Defer (#8-12): latent issues to log as deferred-issues entries (100k chunk cap, empty-term contract, README gap, Test 81 Part B coverage, orphan removal hint). - Minor (#13-19): polish items, skip-by-default. --- knowledge-base/post-audit-followups.md | 366 +++++++++++++++++++++++++ 1 file changed, 366 insertions(+) create mode 100644 knowledge-base/post-audit-followups.md diff --git a/knowledge-base/post-audit-followups.md b/knowledge-base/post-audit-followups.md new file mode 100644 index 000000000..99c316d4b --- /dev/null +++ b/knowledge-base/post-audit-followups.md @@ -0,0 +1,366 @@ +# Post-Audit Follow-ups + +Items surfaced by the six-agent re-audit on `feat/knowledge-base-phase-8` that were **not** resolved during the cleanup pass. Each entry has full context so a fresh agent can pick it up without backreading the conversation. + +The agent picking these up should: +- Read `CLAUDE.md` first (especially "Conditional Routing" and "Skill File Structure" sections — both have load-bearing rules for the markdown items below). +- Read `knowledge-base/deferred-issues.md` for the closed audit ledger (do not reopen items there; they're decided). +- Run the test suite (CLI, store, integration, smoke) before and after each fix. +- Each fix gets its own commit. Commit messages reference the item number from this file. + +--- + +## Branch context + +`feat/knowledge-base-phase-8` is the head of a 4-PR stack (5 → 6 → 7 → 8). Phases 1–4 are merged to main. Phases 5–8 stack open against each other; none merge to main until go-live. The branch had a 26-commit cleanup pass following an initial multi-agent audit. A second six-agent re-audit ran after the cleanup. This file logs what the re-audit surfaced that hasn't been fixed. + +--- + +## Pre-merge musts (the four "tightly scoped" items I batched and then failed to land) + +### #1 — `view-completed.md` reactivation flow has a double-nested bold + missing announcement on edge case + +**File:** `skills/workflow-start/references/view-completed.md:115-137` + +**Context.** When a user reactivates a completed work unit (chooses `r`/`reactivate` in the manage menu), the file flips status to in-progress, then branches on whether the prior status was `cancelled` or `completed`. The completed branch was added during Minor #6 of the cleanup pass (commit `87109d98`) to clear a stale `completed_at` field. Two issues: + +1. **Double-nested bold conditional.** Structure today: + - Outer (line 95): `#### If user chose r/reactivate` (H4) + - First-level bold (line 115): `**If selected.status was completed:**` + - Second-level bold (line 125): `**If the output is true:**` ← double-nest + + `CLAUDE.md` line 622-629 + 639 forbids this. The canonical fix per CLAUDE.md is to flatten by combining conditions into a single bold conditional. The example in CLAUDE.md (lines 624-628) literally shows: + + ``` + **If work_type is not set and other discussions exist:** + ... + **If work_type is not set and no discussions remain:** + ... + ``` + +2. **Announcement only renders on the `true` path.** The `"{name} reactivated."` block is indented inside `**If the output is true:**` (line 131-135). If `manifest exists completed_at` returns `false`, control falls from line 124 → line 137 (`→ Return to caller.`) without rendering the announcement. The cancelled branch (line 103) renders unconditionally. + + When `completed_at` is absent in real life: + - Pre-migration-036 projects (migration not yet run). + - Completed WU with no artifact files (migrations 036/037 skip backfill — `latestMtime === 0`). + - Hand-edited manifests. + +**Fix shape (per CLAUDE.md canonical pattern):** + +The H4 `#### If user chose r/reactivate` stays. Underneath, three peer bold conditionals (matching the three real cases): + +- `**If selected.status was cancelled:**` — existing, unchanged +- `**If selected.status was completed and completed_at is set:**` — delete + announce + return +- `**If selected.status was completed and completed_at is not set:**` — announce + return + +The `manifest exists completed_at` probe sits **before** the bold branches (shared setup, like the canonical example's "1. Shared setup steps..." at CLAUDE.md line 611). It's harmless to run on the cancelled path (output ignored). Lead-in narrative ("Completed work units retain their chunks") moves into each completed-X bold branch where it's relevant. + +**Severity.** Convention violation, not a runtime bug. The flow works on the common path. Edge case (completed-without-completed_at) loses the announcement but the user sees the WU reappear in the in-progress list. + +**Why I failed to land this.** I iterated edits while reasoning instead of writing the full target block first and applying once. Each correction introduced new drift. Multiple attempts violated the convention I was trying to fix. + +**Acceptance criteria for the fix:** +- Zero double-nested bolds. +- Announcement renders on every reactivation path. +- Pattern matches the CLAUDE.md example at lines 622-629 (compound-condition bold siblings). +- All other tests still pass. + +--- + +### #2 — Review process signpost still invites proactive querying + +**File:** `skills/workflow-review-process/SKILL.md:254-257` + +**Context.** During Important #11 of the cleanup pass, I rewrote the "Knowledge Usage" step signposts in `workflow-planning-process/SKILL.md` and `workflow-implementation-process/SKILL.md` because they invited proactive querying while the loaded reference (`knowledge-usage.md` Section E) explicitly forbade it for those phases. I missed `workflow-review-process/SKILL.md` — its signpost still reads: + +``` +> Loading the usage guide for the knowledge base so +> proactive querying is available while verifying decisions. +``` + +But `knowledge-usage.md:89` Section E says: + +> *"Review — query only for cross-work-unit consistency checks ('does this mirror how similar decisions were made elsewhere?'). Consistency with the current spec is already in scope — no KB needed for that."* + +**Fix shape.** Rewrite the signpost to match the planning/implementation pattern — frame as "rules for narrow use", not "green light to query". Reference the planning + implementation rewrites (commit `00419cd2`) as the pattern. + +Suggested wording: + +``` +> Loading the usage guide for the knowledge base. Review against the +> current spec is in scope without the KB — the guide documents the +> narrow case where a cross-work-unit consistency check is warranted. +``` + +(Or whatever wording the agent considers cleaner; structural goal is "frames the reference as 'rules for when use is warranted', not 'use freely'".) + +**Severity.** Cosmetic semantic drift. The reference still reaches the model with the correct guidance; the signpost just contradicts it. Worst case: model queries slightly more than the design wants. + +**Acceptance criteria:** +- Signpost matches the spirit of the planning/implementation rewrites. +- Inline nudge later in the same skill (line ~283 area) is already correct — leave alone unless drift is found there too. + +--- + +### #3 — `cmdIndexBulk` catch dumps stack for UserError + +**File:** `src/knowledge/index.js:755-763` + +**Context.** During Important #7 of the cleanup pass (commit `646245b8`), I introduced a `UserError` class with three contracts: +1. `withRetry` skips it (no retry). +2. `main().catch` prints `Error: ` alone, no stack. +3. Thrown only at user-visible validation sites. + +The third contract holds at `main().catch` but `cmdIndexBulk`'s per-file catch block writes `err.stack` unconditionally on every failure: + +```js +} catch (err) { + // All retries exhausted — add to pending queue. Write the stack to + // stderr so debugging does not depend on users capturing it later. + await addToPendingQueue(item.file, err.message); + process.stderr.write( + `Failed to index ${item.file} after 3 attempts: ${err.message}. Added to pending queue.\n` + ); + if (err.stack) process.stderr.write(err.stack + '\n'); +} +``` + +When `indexSingleFile` throws a `UserError` (chunking-config-not-found, empty-file refusal — both convert via the UserError rollout), the bulk loop dumps the full Node stack frames during a bulk run. Noisy output for what's a clean validation error. + +**Fix shape.** Gate the stack write on `!(err instanceof UserError)`: + +```js +if (err.stack && !(err instanceof UserError)) process.stderr.write(err.stack + '\n'); +``` + +**Severity.** Cosmetic. Information is correct, just noisy. + +**Acceptance criteria:** +- Stack still prints for genuine internal errors (TypeError, etc.). +- UserError instances print only the message line. +- A focused test could be added: index a directory containing a malformed file, assert no stack frames in stderr — but probably overkill for this small fix. + +--- + +### #4 — `workflow-start/SKILL.md` Step 0.2 has paraphrased signpost + +**File:** `skills/workflow-start/SKILL.md:67-69` + +**Context.** During Minor #4 of the cleanup pass (commit `8c6fd446`), I added the canonical "already invoked" gate to Step 0.2. While doing so I left the existing two-line signpost intact: + +``` +> Running migrations to keep workflow files in sync. +> This ensures everything is up to date before we proceed. +``` + +The other 9 entry-point sites (`start-bugfix`, `start-cross-cutting`, `start-epic`, `start-feature`, `start-quickfix`, `continue-bugfix`, `continue-cross-cutting`, `continue-epic`, `continue-feature`, `continue-quickfix`) all use a 1-line canonical signpost: + +``` +> Running migrations to keep workflow files in sync. +``` + +**Fix shape.** Drop the second line so workflow-start matches the canonical 1-line shape. + +**Severity.** Pure consistency drift. No behavioural impact. + +**Acceptance criteria:** +- All 10 entry-point sites have byte-identical Step 0.2 signpost text. + +--- + +## Should-fixes (real correctness/UX issues, not introduced by the cleanup) + +### #5 — OpenAI 401/403 errors are retried + +**File:** `src/knowledge/providers/openai.js:136-148`, interaction with `src/knowledge/index.js:211-240` + +**Context.** `_fetch` throws a plain `Error` for HTTP 401/403 (auth failures). `withRetry`'s class-based bypass list includes `UserError`/`TypeError`/`ReferenceError`/`SyntaxError`/`RangeError` but does not distinguish HTTP error types. So an invalid/expired API key burns the full backoff (1s + 2s + 4s ≈ 7s) on every embed call before surfacing. + +429 (rate limit) **should** retry. 401/403 (auth) **shouldn't** — keys don't fix themselves between retries. + +**Fix shape (two plausible options):** + +1. **Promote 401/403 to UserError in `_fetch`.** They're user-config problems (bad key). The `withRetry` short-circuit + clean `main().catch` rendering then handle them correctly. Cleanest. + +2. **Add a marker class** like `AuthError extends Error` in `providers/openai.js`, add it to `withRetry`'s skip list. More targeted but adds a class for one case. + +Option 1 is consistent with how UserError is used elsewhere (validation failures, provider mismatch). The error message "OpenAI returned 401: invalid API key — check `~/.config/workflows/credentials.json` or `OPENAI_API_KEY` env var" is exactly the kind of actionable user-config message UserError exists for. + +**Severity.** UX — wastes 7s on every bad-key call. Real but not blocking. + +**Acceptance criteria:** +- Bad-key invocation surfaces the error in <100ms (no retry budget burned). +- 429s still retry as today. +- Test in `test-knowledge-openai.cjs` that mocks a 401 response, asserts `withRetry` calls the function exactly once. + +--- + +### #6 — Setup writes openai config before validating the key + +**Files:** `src/knowledge/setup.js:374-407` (`runSystemConfigStep`), `:543-552` (`runProjectInitStep`) + +**Context.** `runSystemConfigStep` writes `provider:'openai', model, dimensions` to disk **before** `ensureOpenAIKey` validates. `ensureOpenAIKey` returns successfully even when the env-var key fails validation (line 408 returns without aborting). `runProjectInitStep` then writes `metadata.json` with `provider:'openai'` (line 545: `provider || null` evaluates `cfg.provider`, which is `'openai'`). + +On the very next `knowledge index`, `resolveProviderState` (`index.js:343-388`) sees `metaProvider === 'openai'` but `provider === null` (resolveProvider returns null when api key is missing), and throws Case 3: + +> *"Provider/model changed since last index. Run `knowledge rebuild` to reindex."* + +The provider hasn't changed — the key is just bad. The user sees a misleading recovery hint. + +**Fix shape.** Re-order setup so the key is validated **before** any config write. If validation fails, abort cleanly with an actionable error ("API key invalid — fix and re-run setup"). Do not write `provider:'openai'` to disk on a bad key. + +Note: `validateApiKey` already exists and does a real test embed call. The bug is purely ordering. + +**Severity.** Real UX bug. User goes through setup, gets through wizard, runs `index`, sees confusing "rebuild" advice that doesn't match their actual problem. + +**Acceptance criteria:** +- Setup with a bad key aborts before writing system config. +- Setup with a good key works as before. +- Test in `test-knowledge-config.cjs` or a new setup-specific test exercises the validation-before-write ordering. + +--- + +### #7 — Setup partial-state recovery gap + +**File:** `src/knowledge/setup.js:536-552` + +**Context.** If `metadata.json` exists but `store.msp` does not (rare — partial cleanup, interrupted prior init, manual deletion), `detected.fullyInitialised === false` and `detected.metadataExists === true`. The conditional at line 543 (`!detected.metadataExists || detected.fullyInitialised`) is **false**, so metadata is **not** rewritten, but the store **is** re-created at line 536. Result: a fresh empty store paired with metadata still pointing at the prior run's provider/model/dimensions. First index after that path errors with the same misleading "Provider/model changed" message as #6. + +**Fix shape.** Tighten the condition so metadata is rewritten whenever the store is being (re)created. Or detect partial-state and warn the user to run `rebuild` instead of trying to recover via setup. + +**Severity.** Edge case but real. Same misleading error surface as #6. + +**Acceptance criteria:** +- Partial-state (metadata-without-store) is detected and either recovered cleanly or surfaced with an actionable error. +- Test that simulates the state. + +--- + +## Defer (real but non-blocking; log as deferred-issue or fix later) + +### #8 — Whole-store enumeration capped at 100k + +**Files:** `src/knowledge/index.js:1379, 1865`; `src/knowledge/store.js:128, 167, 187` + +**Context.** `cmdStatus` and `cmdCompact` rely on `searchFulltext(db, { term: '', limit: 100000 })` returning **every** chunk. Beyond 100k chunks the cap silently truncates: status shows wrong totals, compact misses expired chunks. Per-topic `findInternalIdsByIdentity`/`removeByFilter` share the same cap — a topic with >100k chunks would leak chunks across re-indexes. + +**Realistic at the project level for very long-lived bases.** Per-topic, only on pathological input. + +**Fix shape options:** +1. Iterate via paged search until exhausted. Cleanest but more code. +2. Raise the cap to 1M with a comment explaining the assumption. +3. Add a status warning when chunk count approaches the cap. + +**Severity.** Latent. Will bite some user, eventually. Defer to a deferred-issue entry; revisit when project sizes warrant. + +--- + +### #9 — Empty-term `searchFulltext` is undocumented Orama behaviour with no test + +**Files:** `src/knowledge/store.js:122, 165, 187`; `src/knowledge/index.js:635, 1379, 1865` + +**Context.** Six call sites depend on Orama returning **all** matching docs for `term: ''`: +- `findInternalIdsByIdentity` +- `removeByFilter` +- `countByFilter` (added during Critical #2's `--dry-run` fix) +- `isIndexed` +- `cmdStatus` +- `cmdCompact` + +No store/integration test pins down this contract. An Orama version bump that changed empty-term semantics would silently break all six paths. + +**Fix shape.** Add a single store-level test: insert N docs, run `searchFulltext(db, { term: '', limit: 1000 })`, assert returns N. Pins the contract; if Orama changes behaviour, this test fails first instead of production breaking silently. + +**Severity.** Latent test-coverage gap. Cheap fix. + +--- + +### #10 — Test 81 Part B (pending-removal queue drain) has theatre risk on the negative path + +**File:** `tests/scripts/test-knowledge-cli.sh:1638-1676` (Test 81) + +**Context.** Test 81 was rewritten during Critical #1 to be a real regression guard for the `pending_removals` whitelist fix. Part A (the "queue survives an index write" assertion) is genuine. Part B's "queue drained after remove" assertion only passes because `performRemoval` deliberately omits the registry-existence check that `cmdRemove` enforces (per Important #9 design). The drain path silently succeeds against a non-existent `stale-wu`, deletes the queue entry. Test never proves a **real** failure (lock timeout, store I/O error) increments `attempts` or eventually evicts after `REMOVAL_MAX_ATTEMPTS`. + +**Fix shape.** Add a test that simulates real removal failure (e.g. mock the store path to point at a read-only file, or stub `performRemoval` to throw N times), asserts attempts increment, asserts eviction at `REMOVAL_MAX_ATTEMPTS`. The current Test 81 Part B should be renamed to "queue drains on no-op success" so its purpose is clear. + +**Severity.** Coverage gap on the eviction branch. Code path works; we just don't test it. + +--- + +### #11 — README has zero mention of the knowledge base + +**File:** `README.md` (238 lines) + +**Context.** The user-facing entry point never mentions: +- The knowledge base feature. +- The OpenAI API key requirement. +- The hard-stop on first run after upgrade (existing users hit `Knowledge Base Not Ready` on next workflow invocation per `knowledge-check.md:39-65`). +- `knowledge setup`. + +Per `knowledge-base/design.md:316-333`, the KB is **required infrastructure**. A user installing via `npx agntc add leeovery/agentic-workflows` will hit the hard stop with no warning in Getting Started. + +**Fix shape.** +- `README.md:48-58` (Requirements section) should mention Node ≥ 18, optional OpenAI API key. +- A "Knowledge Base" section explaining what it is, the first-run setup, the stub-mode option for keyword-only. + +**Severity.** Documentation gap. Real impact on first-time users post-merge. + +--- + +### #12 — Manual `knowledge remove --work-unit ` errors with no escape hint + +**File:** `src/knowledge/index.js:1740-1751` + +**Context.** Important #9 added registry validation to `cmdRemove`. After absorption (`absorb-into-epic.md`), the WU's registry entry is deleted **after** the remove call. If chunks linger and the user later tries `knowledge remove --work-unit ` manually, they hit `UserError: Work unit "..." not found in project manifest` with no actionable path. The error suggests `knowledge status`, not `knowledge compact` (which is the actual escape hatch via `processPendingRemovals`). + +**Fix shape.** Update the error message in `cmdRemove`'s `catch (err) { if (err.status === 2) throw new UserError(...) }` block to mention `knowledge compact` as an option for orphaned WUs. + +Or: when registry says "not found" but chunks exist for that WU in the store, route into a different message path that tells the user how to clean up. + +**Severity.** UX — narrow scenario, but user lands in a dead-end with no clear next step. + +--- + +## Minor / polish (skip-by-default unless paired with a related fix) + +### #13 — `contextual-query.md:3` header stale + +Says "loaded at phase start in research, discussion, and investigation processing skills" — but is also loaded by scoping (per Minor #9 of the cleanup). Update header to include scoping. + +### #14 — Phase task lists all-unchecked + +`knowledge-base/phase-1-tasks.md` through `phase-8-tasks.md` (76 total checkboxes, 0 checked) despite branch being phase-8 with all features implemented. Either update post-implementation or document the convention as "checkboxes are author-time artefacts, not progress trackers". + +### #15 — Setup integer parser is lenient + +`src/knowledge/setup.js:366-370` — `parseInt('1536abc', 10)` returns `1536`; `Number.isInteger` then passes. Setup happily stores partly-valid input as the dimensions field. Add `/^\d+$/` regex check before `parseInt`. + +### #16 — `cmdCompact` rejects `decay_months: null` + +`src/knowledge/index.js:1842-1852`. Only `false` or non-negative integer accepted. A user hand-editing config and writing `null` intuitively (to disable) gets an error. Treat `null` as equivalent to `false`. + +### #17 — `cmdStatus` orphan check is cwd-sensitive + +`src/knowledge/index.js:1485`. `fs.existsSync(path.resolve(c.source_file))` against the relative path stored at index time. Status from a different cwd reports every chunk as orphaned. Resolve relative to the project root, not `process.cwd()`. + +### #18 — Test convention drift + +Migration tests 001-028 use `set -eo pipefail`; 029-037 use `set -euo pipefail`. Pick one (likely the stricter `-u`) and apply uniformly. Or add a comment explaining the intent. + +### #19 — Bundle ~30% over design estimate + +`knowledge-base/design.md:208` estimates ~110-120 KB minified. Current bundle is ~156 KB (well under the 200 KB ceiling). Update the design estimate to reflect current reality, or note that ESM-resolution + Orama version drift accounts for the increase. + +--- + +## How to use this file + +1. Pick an item (start with the pre-merge musts unless you have a reason). +2. Read the cited files end-to-end. Do not edit until you've understood the surrounding context. +3. Read CLAUDE.md sections relevant to the item type (markdown convention items: "Conditional Routing" + "Skill File Structure"; code items: no specific section, but project conventions in CLAUDE.md still apply). +4. Write the full target shape mentally, then apply as a single edit. Iterating edits while reasoning is the failure mode that left these items unfinished. +5. Run the test suite before and after. +6. One commit per item. Reference the item number from this file in the commit message. +7. Update this file: change `## #N — ...` to `## #N — ... (✅ commit ``)` so the next agent knows what's done. + +When all pre-merge musts (#1–#4) are landed, the branch is ready to merge into the stack. From a8152e1d7c01e638f39818cc0d3eea34286226ed Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:27:30 +0100 Subject: [PATCH 50/78] docs(skills): flatten view-completed reactivate to peer bold conditionals (#1) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Replace double-nested bold conditional with three peer bold branches (cancelled / completed-with-completed_at / completed-without-completed_at). Move the `manifest exists completed_at` probe into shared setup so the reactivation announcement renders on every path, including the edge case where a completed work unit has no `completed_at` field (pre-migration-036 projects, completed WUs whose backfill skipped on `latestMtime === 0`, hand-edited manifests). Matches the canonical compound-condition pattern in CLAUDE.md (Conditional Routing → "Avoid double-nesting"). Reference: post-audit-followups.md #1. Co-Authored-By: Claude Opus 4.7 (1M context) --- .../references/view-completed.md | 26 +++++++++++++------ 1 file changed, 18 insertions(+), 8 deletions(-) diff --git a/skills/workflow-start/references/view-completed.md b/skills/workflow-start/references/view-completed.md index 45c4d14c8..71727fa32 100644 --- a/skills/workflow-start/references/view-completed.md +++ b/skills/workflow-start/references/view-completed.md @@ -100,6 +100,12 @@ Set status back to in-progress: node .claude/skills/workflow-manifest/scripts/manifest.cjs set {selected.name} status in-progress ``` +Capture whether `completed_at` is set (used by the completed branches; harmless on the cancelled path): + +```bash +node .claude/skills/workflow-manifest/scripts/manifest.cjs exists {selected.name} completed_at +``` + **If `selected.status` was `cancelled`:** Cancellation removed the work unit's chunks from the knowledge base. Restore them by loading **[reindex-work-unit.md](../../workflow-knowledge/references/reindex-work-unit.md)** with work_unit = `{selected.name}`. @@ -112,21 +118,25 @@ Cancellation removed the work unit's chunks from the knowledge base. Restore the → Return to caller. -**If `selected.status` was `completed`:** +**If `selected.status` was `completed` and `completed_at` is set:** -Completed work units retain their chunks — no re-indexing needed. - -Check for a stale `completed_at`: +Completed work units retain their chunks — no re-indexing needed. Clear the stale `completed_at`: ```bash -node .claude/skills/workflow-manifest/scripts/manifest.cjs exists {selected.name} completed_at +node .claude/skills/workflow-manifest/scripts/manifest.cjs delete {selected.name} completed_at ``` -**If the output is `true`:** +> *Output the next fenced block as a code block:* -```bash -node .claude/skills/workflow-manifest/scripts/manifest.cjs delete {selected.name} completed_at ``` +"{selected.name:(titlecase)}" reactivated. +``` + +→ Return to caller. + +**If `selected.status` was `completed` and `completed_at` is not set:** + +Completed work units retain their chunks — no re-indexing needed. > *Output the next fenced block as a code block:* From 40ce4038be94d1b8617a10883f47ce68b28a3322 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:27:44 +0100 Subject: [PATCH 51/78] docs(skills): reframe review knowledge usage signpost (#2) The signpost invited proactive querying while the loaded reference (knowledge-usage.md Section E) restricts review to cross-work-unit consistency checks only. Rewrite to match the planning/implementation pattern (commit 00419cd2): frame the reference as "rules for narrow use", not a green light to query. Reference: post-audit-followups.md #2. Co-Authored-By: Claude Opus 4.7 (1M context) --- skills/workflow-review-process/SKILL.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/skills/workflow-review-process/SKILL.md b/skills/workflow-review-process/SKILL.md index 44a2ec9b7..b28eeb871 100644 --- a/skills/workflow-review-process/SKILL.md +++ b/skills/workflow-review-process/SKILL.md @@ -252,8 +252,10 @@ Load **[load-project-skills.md](references/load-project-skills.md)** and follow > *Output the next fenced block as markdown (not a code block):* ``` -> Loading the usage guide for the knowledge base so -> proactive querying is available while verifying decisions. +> Loading the usage guide for the knowledge base. Review verifies +> against the current spec — that's in scope without the KB. The guide +> documents the narrow case where a cross-work-unit consistency check +> is warranted. ``` Load **[knowledge-usage.md](../workflow-knowledge/references/knowledge-usage.md)** and follow its instructions as written. From 374ac15dfe60787572cb41d324384ec792580e40 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:27:56 +0100 Subject: [PATCH 52/78] docs(skills): trim workflow-start Step 0.2 signpost to canonical 1-line shape (#4) All other entry-point sites (start-* and continue-* skills) use a 1-line migration signpost. Drop the redundant second line so all 11 entry-point sites are byte-identical. Reference: post-audit-followups.md #4. Co-Authored-By: Claude Opus 4.7 (1M context) --- skills/workflow-start/SKILL.md | 1 - 1 file changed, 1 deletion(-) diff --git a/skills/workflow-start/SKILL.md b/skills/workflow-start/SKILL.md index d1289e863..0bc70b9ae 100644 --- a/skills/workflow-start/SKILL.md +++ b/skills/workflow-start/SKILL.md @@ -66,7 +66,6 @@ Load **[casing-conventions.md](../workflow-shared/references/casing-conventions. ``` > Running migrations to keep workflow files in sync. -> This ensures everything is up to date before we proceed. ``` **Run migrations — this is mandatory. You must complete it before proceeding.** From e7b9d01846c41213dbba6574730fc409e792abd7 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:28:54 +0100 Subject: [PATCH 53/78] fix(knowledge): suppress stack dump for UserError in cmdIndexBulk (#3) UserError represents user-visible validation failures (chunking config not found, empty-file refusal, etc.). The top-level main().catch already prints the message alone with no stack; cmdIndexBulk's per-file catch should follow the same contract so bulk runs do not dump full Node stack frames for clean validation errors. Genuine internal errors (TypeError, ReferenceError, etc.) still print their stacks for debugging. Reference: post-audit-followups.md #3. Co-Authored-By: Claude Opus 4.7 (1M context) --- src/knowledge/index.js | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 51ecaf3ed..021d24658 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -755,11 +755,13 @@ async function cmdIndexBulk(options, cfg, provider) { } catch (err) { // All retries exhausted — add to pending queue. Write the stack to // stderr so debugging does not depend on users capturing it later. + // Skip the stack for UserError — those are user-config validation + // failures and the message line alone is the actionable signal. await addToPendingQueue(item.file, err.message); process.stderr.write( `Failed to index ${item.file} after 3 attempts: ${err.message}. Added to pending queue.\n` ); - if (err.stack) process.stderr.write(err.stack + '\n'); + if (err.stack && !(err instanceof UserError)) process.stderr.write(err.stack + '\n'); } } From d2d66f13c98b01acbd89c5c4dccb8b111681e4d5 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:29:16 +0100 Subject: [PATCH 54/78] =?UTF-8?q?docs(knowledge):=20mark=20pre-merge=20mus?= =?UTF-8?q?ts=20#1=E2=80=93#4=20as=20landed?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Annotate each completed item with its commit sha so the next agent sees the branch is clear of pre-merge musts and can start on the should-fix queue (#5–#7) or defer items. Co-Authored-By: Claude Opus 4.7 (1M context) --- knowledge-base/post-audit-followups.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/knowledge-base/post-audit-followups.md b/knowledge-base/post-audit-followups.md index 99c316d4b..fd2319432 100644 --- a/knowledge-base/post-audit-followups.md +++ b/knowledge-base/post-audit-followups.md @@ -18,7 +18,7 @@ The agent picking these up should: ## Pre-merge musts (the four "tightly scoped" items I batched and then failed to land) -### #1 — `view-completed.md` reactivation flow has a double-nested bold + missing announcement on edge case +### #1 — `view-completed.md` reactivation flow has a double-nested bold + missing announcement on edge case (✅ commit `a8152e1d`) **File:** `skills/workflow-start/references/view-completed.md:115-137` @@ -67,7 +67,7 @@ The `manifest exists completed_at` probe sits **before** the bold branches (shar --- -### #2 — Review process signpost still invites proactive querying +### #2 — Review process signpost still invites proactive querying (✅ commit `40ce4038`) **File:** `skills/workflow-review-process/SKILL.md:254-257` @@ -102,7 +102,7 @@ Suggested wording: --- -### #3 — `cmdIndexBulk` catch dumps stack for UserError +### #3 — `cmdIndexBulk` catch dumps stack for UserError (✅ commit `e7b9d018`) **File:** `src/knowledge/index.js:755-763` @@ -142,7 +142,7 @@ if (err.stack && !(err instanceof UserError)) process.stderr.write(err.stack + ' --- -### #4 — `workflow-start/SKILL.md` Step 0.2 has paraphrased signpost +### #4 — `workflow-start/SKILL.md` Step 0.2 has paraphrased signpost (✅ commit `374ac15d`) **File:** `skills/workflow-start/SKILL.md:67-69` From 5884a44308b9969102b6cb616d6d2bb8edf28de3 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:29:40 +0100 Subject: [PATCH 55/78] docs(skills): drop already-invoked guard from workflow-start Step 0.2 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit workflow-start is the top of the chain — nothing runs before it, so the `/workflow-migrate` skill cannot have been invoked already. Remove the dead conditional and run migrations unconditionally. Co-Authored-By: Claude Opus 4.7 (1M context) --- skills/workflow-start/SKILL.md | 6 ------ 1 file changed, 6 deletions(-) diff --git a/skills/workflow-start/SKILL.md b/skills/workflow-start/SKILL.md index 0bc70b9ae..d5947377f 100644 --- a/skills/workflow-start/SKILL.md +++ b/skills/workflow-start/SKILL.md @@ -56,12 +56,6 @@ Load **[casing-conventions.md](../workflow-shared/references/casing-conventions. ### Step 0.2: Migrations -#### If the `/workflow-migrate` skill has already been invoked in this conversation - -→ Proceed to **Step 0.3**. - -#### Otherwise - > *Output the next fenced block as markdown (not a code block):* ``` From 6cd6ccba89168c1ad43ad8fdf6be3dba22eacb1c Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:35:46 +0100 Subject: [PATCH 56/78] fix(knowledge): short-circuit retry on OpenAI 401/403 (#5) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Add an AuthError marker class in providers/openai.js, throw it for HTTP 401 and 403 from the embeddings API, and add it to withRetry's permanent-failure skip list. Bad/expired keys do not fix themselves between retries, so the previous behaviour burned ~7s of backoff budget per embed call before surfacing the error. 429s still retry as before. Tests: - test-knowledge-openai.cjs — assert AuthError class on 401 + new 403 case - test-knowledge-retry.cjs — assert withRetry calls fn exactly once on AuthError Reference: post-audit-followups.md #5. 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pi(t,e){return new _e(e).encodeSharedRef(t)}var mi=v(()=>{Gn()});function $t(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var gi=v(()=>{});var ya,wa,Bt,yi=v(()=>{Ut();ya=16,wa=16,Bt=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=ya,n=wa){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=Cn(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Yn,Qe,xi,xa,Hn,Ze,Jn,Sa,wi,Ia,K,Ft=v(()=>{gi();Ct();Lt();Ut();Kn();yi();Ot();Yn="array",Qe="map_key",xi="map_value",xa=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new $("The type of key must be string or number but "+typeof t)},Hn=class{stack=[];stackHeadPosition=-1;get length(){return 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o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new $(`Unrecognized type byte: ${$t(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Yn)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===Qe){if(n==="__proto__")throw new $("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=xi;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=Qe;continue e}}return n}}readHeadByte(){return this.headByte===Ze&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=Ze}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new $(`Unrecognized array type byte: ${$t(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new $(`Max length exceeded: map 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r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=fi(this.view,this.pos);return this.pos+=8,e}readI64(){let e=Rt(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}}});function Si(t,e){return new K(e).decode(t)}function Ii(t,e){return new K(e).decodeMulti(t)}var bi=v(()=>{Ft()});function ba(t){return t[Symbol.asyncIterator]!=null}async function*Aa(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function zt(t){return ba(t)?t:Aa(t)}var Ai=v(()=>{});async function Ei(t,e){let n=zt(t);return new K(e).decodeAsync(n)}function vi(t,e){let n=zt(t);return new K(e).decodeArrayStream(n)}function ki(t,e){let n=zt(t);return new K(e).decodeStream(n)}var Ti=v(()=>{Ft();Ai()});var _i={};te(_i,{DecodeError:()=>$,Decoder:()=>K,EXT_TIMESTAMP:()=>Bn,Encoder:()=>_e,ExtData:()=>re,ExtensionCodec:()=>ce,decode:()=>Si,decodeArrayStream:()=>vi,decodeAsync:()=>Ei,decodeMulti:()=>Ii,decodeMultiStream:()=>ki,decodeTimestampExtension:()=>jn,decodeTimestampToTimeSpec:()=>Wn,encode:()=>pi,encodeDateToTimeSpec:()=>zn,encodeTimeSpecToTimestamp:()=>Fn,encodeTimestampExtension:()=>Vn});var Di=v(()=>{mi();bi();Ti();Ft();Ot();Gn();Ct();$n();qn()});var Qn=we((yh,Pi)=>{"use strict";var F=require("fs"),G=(ci(),wr(oi)),{encode:Ea,decode:va}=(Di(),wr(_i)),Xn=["id","content","work_unit","work_type","phase","topic","confidence","source_file","timestamp"];function Mi(t){if(!Number.isInteger(t)||t<=0)throw new Error(`createStore: dimensions must be a positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function ka(t){let e=Mi(t);return G.create({schema:e})}function Ta(t){for(let e of Xn)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function _a(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");Ta(e);let n={};for(let r of Xn)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). 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e=="string"?this.encodeString(e):this.useBigInt64&&typeof e=="bigint"?this.encodeBigInt64(e):this.encodeObject(e,n)}ensureBufferSizeToWrite(e){let n=this.pos+e;this.view.byteLength=0?e<128?this.writeU8(e):e<256?(this.writeU8(204),this.writeU8(e)):e<65536?(this.writeU8(205),this.writeU16(e)):e<4294967296?(this.writeU8(206),this.writeU32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(207),this.writeU64(e)):e>=-32?this.writeU8(224|e+32):e>=-128?(this.writeU8(208),this.writeI8(e)):e>=-32768?(this.writeU8(209),this.writeI16(e)):e>=-2147483648?(this.writeU8(210),this.writeI32(e)):this.useBigInt64?this.encodeNumberAsFloat(e):(this.writeU8(211),this.writeI64(e)):this.encodeNumberAsFloat(e)}encodeNumberAsFloat(e){this.forceFloat32?(this.writeU8(202),this.writeF32(e)):(this.writeU8(203),this.writeF64(e))}encodeBigInt64(e){e>=BigInt(0)?(this.writeU8(207),this.writeBigUint64(e)):(this.writeU8(211),this.writeBigInt64(e))}writeStringHeader(e){if(e<32)this.writeU8(160+e);else if(e<256)this.writeU8(217),this.writeU8(e);else if(e<65536)this.writeU8(218),this.writeU16(e);else if(e<4294967296)this.writeU8(219),this.writeU32(e);else throw new Error(`Too long string: ${e} bytes in UTF-8`)}encodeString(e){let r=li(e);this.ensureBufferSizeToWrite(5+r),this.writeStringHeader(r),ui(e,this.bytes,this.pos),this.pos+=r}encodeObject(e,n){let r=this.extensionCodec.tryToEncode(e,this.context);if(r!=null)this.encodeExtension(r);else if(Array.isArray(e))this.encodeArray(e,n);else if(ArrayBuffer.isView(e))this.encodeBinary(e);else if(typeof e=="object")this.encodeMap(e,n);else throw new Error(`Unrecognized object: ${Object.prototype.toString.apply(e)}`)}encodeBinary(e){let n=e.byteLength;if(n<256)this.writeU8(196),this.writeU8(n);else if(n<65536)this.writeU8(197),this.writeU16(n);else if(n<4294967296)this.writeU8(198),this.writeU32(n);else throw new Error(`Too large binary: ${n}`);let r=Je(e);this.writeU8a(r)}encodeArray(e,n){let r=e.length;if(r<16)this.writeU8(144+r);else if(r<65536)this.writeU8(220),this.writeU16(r);else if(r<4294967296)this.writeU8(221),this.writeU32(r);else throw new Error(`Too large array: ${r}`);for(let s of e)this.doEncode(s,n+1)}countWithoutUndefined(e,n){let r=0;for(let s of n)e[s]!==void 0&&r++;return r}encodeMap(e,n){let r=Object.keys(e);this.sortKeys&&r.sort();let s=this.ignoreUndefined?this.countWithoutUndefined(e,r):r.length;if(s<16)this.writeU8(128+s);else if(s<65536)this.writeU8(222),this.writeU16(s);else if(s<4294967296)this.writeU8(223),this.writeU32(s);else throw new Error(`Too large map object: ${s}`);for(let i of r){let o=e[i];this.ignoreUndefined&&o===void 0||(this.encodeString(i),this.doEncode(o,n+1))}}encodeExtension(e){if(typeof e.data=="function"){let r=e.data(this.pos+6),s=r.length;if(s>=4294967296)throw new Error(`Too large extension object: ${s}`);this.writeU8(201),this.writeU32(s),this.writeI8(e.type),this.writeU8a(r);return}let n=e.data.length;if(n===1)this.writeU8(212);else if(n===2)this.writeU8(213);else if(n===4)this.writeU8(214);else if(n===8)this.writeU8(215);else if(n===16)this.writeU8(216);else if(n<256)this.writeU8(199),this.writeU8(n);else if(n<65536)this.writeU8(200),this.writeU16(n);else if(n<4294967296)this.writeU8(201),this.writeU32(n);else throw new Error(`Too large extension object: ${n}`);this.writeI8(e.type),this.writeU8a(e.data)}writeU8(e){this.ensureBufferSizeToWrite(1),this.view.setUint8(this.pos,e),this.pos++}writeU8a(e){let n=e.length;this.ensureBufferSizeToWrite(n),this.bytes.set(e,this.pos),this.pos+=n}writeI8(e){this.ensureBufferSizeToWrite(1),this.view.setInt8(this.pos,e),this.pos++}writeU16(e){this.ensureBufferSizeToWrite(2),this.view.setUint16(this.pos,e),this.pos+=2}writeI16(e){this.ensureBufferSizeToWrite(2),this.view.setInt16(this.pos,e),this.pos+=2}writeU32(e){this.ensureBufferSizeToWrite(4),this.view.setUint32(this.pos,e),this.pos+=4}writeI32(e){this.ensureBufferSizeToWrite(4),this.view.setInt32(this.pos,e),this.pos+=4}writeF32(e){this.ensureBufferSizeToWrite(4),this.view.setFloat32(this.pos,e),this.pos+=4}writeF64(e){this.ensureBufferSizeToWrite(8),this.view.setFloat64(this.pos,e),this.pos+=8}writeU64(e){this.ensureBufferSizeToWrite(8),fi(this.view,this.pos,e),this.pos+=8}writeI64(e){this.ensureBufferSizeToWrite(8),Rt(this.view,this.pos,e),this.pos+=8}writeBigUint64(e){this.ensureBufferSizeToWrite(8),this.view.setBigUint64(this.pos,e),this.pos+=8}writeBigInt64(e){this.ensureBufferSizeToWrite(8),this.view.setBigInt64(this.pos,e),this.pos+=8}}});function mi(t,e){return new _e(e).encodeSharedRef(t)}var gi=v(()=>{Yn()});function Bt(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var yi=v(()=>{});var xa,Sa,Ft,wi=v(()=>{Ot();xa=16,Sa=16,Ft=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=xa,n=Sa){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=$n(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Hn,Qe,Si,Ia,Jn,Ze,Xn,ba,xi,Aa,K,zt=v(()=>{yi();$t();Ct();Ot();Gn();wi();Pt();Hn="array",Qe="map_key",Si="map_value",Ia=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new $("The type of key must be string or number but "+typeof t)},Jn=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=Hn,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=Qe,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===Hn){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===Qe||e.type===Si){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},Ze=-1,Xn=new DataView(new ArrayBuffer(0)),ba=new Uint8Array(Xn.buffer);try{Xn.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}xi=new RangeError("Insufficient data"),Aa=new Ft,K=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Xn;bytes=ba;headByte=Ze;stack=new Jn;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??ce.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??4294967295,this.maxBinLength=e?.maxBinLength??4294967295,this.maxArrayLength=e?.maxArrayLength??4294967295,this.maxMapLength=e?.maxMapLength??4294967295,this.maxExtLength=e?.maxExtLength??4294967295,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Aa,this.mapKeyConverter=e?.mapKeyConverter??Ia}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=Ze,this.stack.reset()}setBuffer(e){let n=Je(e);this.bytes=n,this.view=new DataView(n.buffer,n.byteOffset,n.byteLength),this.pos=0}appendBuffer(e){if(this.headByte===Ze&&!this.hasRemaining(1))this.setBuffer(e);else{let n=this.bytes.subarray(this.pos),r=Je(e),s=new Uint8Array(n.length+r.length);s.set(n),s.set(r,n.length),this.setBuffer(s)}}hasRemaining(e){return this.view.byteLength-this.pos>=e}createExtraByteError(e){let{view:n,pos:r}=this;return new RangeError(`Extra ${n.byteLength-r} of ${n.byteLength} byte(s) found at buffer[${e}]`)}decode(e){if(this.entered)return this.clone().decode(e);try{this.entered=!0,this.reinitializeState(),this.setBuffer(e);let n=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return n}finally{this.entered=!1}}*decodeMulti(e){if(this.entered){yield*this.clone().decodeMulti(e);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(e);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(e){if(this.entered)return this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${Bt(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new $(`Unrecognized type byte: ${Bt(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Hn)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===Qe){if(n==="__proto__")throw new $("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=Si;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=Qe;continue e}}return n}}readHeadByte(){return this.headByte===Ze&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=Ze}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new $(`Unrecognized array type byte: ${Bt(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new $(`Max length exceeded: map length (${e}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(e)}pushArrayState(e){if(e>this.maxArrayLength)throw new $(`Max length exceeded: array length (${e}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(e)}decodeString(e,n){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(e,n):this.decodeBinary(e,n)}decodeUtf8String(e,n){if(e>this.maxStrLength)throw new $(`Max length exceeded: UTF-8 byte length (${e}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength0?this.stack.top().type===Qe:!1}decodeBinary(e,n){if(e>this.maxBinLength)throw new $(`Max length exceeded: bin length (${e}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(e+n))throw xi;let r=this.pos+n,s=this.bytes.subarray(r,r+e);return this.pos+=n+e,s}decodeExtension(e,n){if(e>this.maxExtLength)throw new $(`Max length exceeded: ext length (${e}) > maxExtLength (${this.maxExtLength})`);let r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=hi(this.view,this.pos);return this.pos+=8,e}readI64(){let e=Lt(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}}});function Ii(t,e){return new K(e).decode(t)}function bi(t,e){return new K(e).decodeMulti(t)}var Ai=v(()=>{zt()});function Ea(t){return t[Symbol.asyncIterator]!=null}async function*va(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Vt(t){return Ea(t)?t:va(t)}var Ei=v(()=>{});async function vi(t,e){let n=Vt(t);return new K(e).decodeAsync(n)}function ki(t,e){let n=Vt(t);return new K(e).decodeArrayStream(n)}function Ti(t,e){let n=Vt(t);return new K(e).decodeStream(n)}var _i=v(()=>{zt();Ei()});var 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Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function or(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function rl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=or(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=tt.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{C.closeSync(a)}C.chmodSync(c,384),C.renameSync(c,t);try{C.chmodSync(t,384)}catch{}}function Zi(t,e){if(!t)return null;let n=Yi[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Xi(),s;try{s=or(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function sl(t){let e=t&&t.systemPath||Hi(),n=t&&t.projectPath||Ji(),r=ir(e),s=ir(n),i=Object.assign({},Gi);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=Zi(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function il(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new tl(n!=null?{dimensions:n}:void 0)}if(!sr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${sr.join(", ")}`);return t._api_key&&e==="openai"?new nl({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function ol(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=tt.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),C.renameSync(r,t)}Qi.exports={DEFAULTS:Gi,AVAILABLE_PROVIDERS:sr,PROVIDER_ENV_VARS:Yi,systemConfigPath:Hi,projectConfigPath:Ji,credentialsPath:Xi,readConfigFile:ir,loadConfig:sl,loadCredentials:or,writeCredentials:rl,resolveApiKey:Zi,resolveProvider:il,writeConfigFile:ol}});var yo=we((Eh,go)=>{"use strict";var le=require("fs"),ue=require("path"),cl=require("readline"),B=cr(),ar=er(),{OpenAIProvider:al}=Wt(),eo="text-embedding-3-small",to=1536,no=1536;function ro(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function so(){let t=cl.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function Wt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function so(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let d of l.toString("utf8")){if(d===` +`),t.close(),process.exit(130)}),t}function jt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function io(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let d of l.toString("utf8")){if(d===` `||d==="\r")return c(),s.write(` `),n(o.trim());if(d===""){c(),s.write(` `),process.exit(130);return}if(d==="")return c(),s.write(` -`),n(o.trim());if(d==="\x7F"||d==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}d<" "||(o+=d,s.write("*"))}};r.on("data",a)})}function io({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function oo(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function co(){return{knowledge:{}}}function ao(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function lo(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function jt({apiKey:t,model:e,dimensions:n}){let s=await new ol({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function qt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. 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Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function uo(t){let e=B.systemConfigPath(),n=ao(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(d==="\x7F"||d==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}d<" "||(o+=d,s.write("*"))}};r.on("data",a)})}function oo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function co(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function ao(){return{knowledge:{}}}function lo(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function uo(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function qt({apiKey:t,model:e,dimensions:n}){let s=await new al({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Kt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function fo(t){let e=B.systemConfigPath(),n=lo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let l=n.knowledge;if(process.stdout.write(` provider: ${l.provider==null?"(none \u2014 stub mode)":l.provider} @@ -50,26 +50,26 @@ Embedding provider: `),process.stdout.write(` openai \u2014 OpenAI embeddings API (requires an API key) `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) -`);let s;for(;s=(await Wt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return B.writeConfigFile(e,oo()),process.stdout.write(` +`);let s;for(;s=(await jt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". +`);if(s==="skip")return B.writeConfigFile(e,co()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await Wt(t,"Embedding model",Qi),o=await Wt(t,"Vector dimensions",String(eo)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),B.writeConfigFile(e,io({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await jt(t,"Embedding model",eo),o=await jt(t,"Vector dimensions",String(to)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1)),B.writeConfigFile(e,oo({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let a=B.PROVIDER_ENV_VARS.openai;return await fo(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function fo(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`);let a=B.PROVIDER_ENV_VARS.openai;return await ho(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function ho(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... -`);try{await jt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. -`)}catch(c){let{message:a,hint:l}=qt(c);process.stdout.write(`${a} +`);try{await qt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. +`)}catch(c){let{message:a,hint:l}=Kt(c);process.stdout.write(`${a} ${l} `),process.stdout.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. Setup will continue \u2014 indexing will queue until the key is corrected. `)}return}let o=B.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` Found an existing API key in ${s} \u2014 validating via a test embed... -`);try{await jt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. -`);return}catch(c){let{message:a,hint:l}=qt(c);if(process.stdout.write(`${a} +`);try{await qt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. +`);return}catch(c){let{message:a,hint:l}=Kt(c);if(process.stdout.write(`${a} ${l} `),!await De(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await cl(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function cl(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`);return}}}await ll(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function ll(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -85,17 +85,17 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await so(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await io(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... -`);try{await jt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=qt(o);if(process.stdout.write(`${c} +`);try{await qt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=Kt(o);if(process.stdout.write(`${c} ${a} `),!await De(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. Set $${e} in your shell or re-run \`knowledge setup\`. `);return}continue}B.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function ho(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=lo(e);if(i.fullyInitialised){if(process.stdout.write(` +`);return}}async function po(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=uo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await De(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -103,27 +103,27 @@ Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,co()),process.stdout.write(` config.json written -`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:to;if(!i.storeExists||i.fullyInitialised){let l=await cr.createStore(a);await cr.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) -`)}return(!i.metadataExists||i.fullyInitialised)&&(cr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function po(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` +`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,ao()),process.stdout.write(` config.json written +`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:no;if(!i.storeExists||i.fullyInitialised){let l=await ar.createStore(a);await ar.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) +`)}return(!i.metadataExists||i.fullyInitialised)&&(ar.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written +`)),{created:!0,provider:c,dimensions:a}}async function mo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function al(t,e,n){no();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=ro(),i;try{process.stdout.write(` +`)}}async function ul(t,e,n){ro();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=so(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await uo(s),await ho(s)}finally{s.close()}await po(t,n),process.stdout.write(` +`),i=await fo(s),await po(s)}finally{s.close()}await mo(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}mo.exports={cmdSetup:al,requireTTY:no,createPrompter:ro,ask:Wt,askYesNo:De,askSecret:so,buildSystemConfigOpenAI:io,buildSystemConfigStub:oo,buildProjectConfigEmpty:co,detectSystemConfig:ao,detectProjectInit:lo,validateApiKey:jt,describeValidationError:qt,ensureOpenAIKey:fo,runSystemConfigStep:uo,runProjectInitStep:ho,runInitialIndexStep:po,KEYWORD_ONLY_DIMENSIONS:to,OPENAI_DEFAULT_MODEL:Qi,OPENAI_DEFAULT_DIMENSIONS:eo}});var E=require("fs"),z=require("path"),k=Qn(),xo=Bi(),{StubProvider:ll}=tr(),{OpenAIProvider:ul}=Vt(),me=or(),So=go(),fr=["research","discussion","investigation","specification"],dl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}go.exports={cmdSetup:ul,requireTTY:ro,createPrompter:so,ask:jt,askYesNo:De,askSecret:io,buildSystemConfigOpenAI:oo,buildSystemConfigStub:co,buildProjectConfigEmpty:ao,detectSystemConfig:lo,detectProjectInit:uo,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:ho,runSystemConfigStep:fo,runProjectInitStep:po,runInitialIndexStep:mo,KEYWORD_ONLY_DIMENSIONS:no,OPENAI_DEFAULT_MODEL:eo,OPENAI_DEFAULT_DIMENSIONS:to}});var E=require("fs"),z=require("path"),k=er(),So=Fi(),{StubProvider:dl}=nr(),{OpenAIProvider:fl,AuthError:Io}=Wt(),me=cr(),bo=yo(),hr=["research","discussion","investigation","specification"],hl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),nt=[1e3,2e3,4e3],fl=5,ur=10,hr=1536,yo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function Io(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],pl=5,dr=10,pr=1536,wo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function Ao(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -149,77 +149,77 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results --dry-run Preview without making changes - --help, -h Show this usage and exit 0`;function Z(){return z.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return z.join(Z(),"store.msp")}function j(){return z.join(Z(),"metadata.json")}function se(){return z.join(Z(),".lock")}function hl(t){return new Promise(e=>setTimeout(e,t))}async function rt(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||nt,s;for(let i=0;isetTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;igr(s,o,n,r),{maxAttempts:3,backoff:nt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await vo(n,r,fl)}async function gr(t,e,n,r){let s=pl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=xo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. 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Removing from queue. -`),await Kt(o.file);continue}let a;try{a=pr(o.file)}catch{await Kt(o.file);continue}try{await rt(()=>gr(o.file,a,t,e),{maxAttempts:3,backoff:nt}),await Kt(o.file)}catch(l){await Eo(o.file,l.message)}}}var dr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function ko(t,e){let n=j(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function wo(t){let e=j(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function To(){let t=j();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=dr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${dr} attempts \u2014 evicting. -`),await wo(r);continue}try{await _o({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. -`),await wo(r)}catch(s){try{await ko({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function _o(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var gl={high:4,medium:3,"low-medium":2,low:1};function yl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function wl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var lr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},xl=.1;function Sl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=xl);let c=gl[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Il(t){let e=[];for(let n of t)(!n.field||!lr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". 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Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let u=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),E.existsSync(z.resolve(p.source_file))||u.push(p.source_file));if(u.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${u.length} files`);for(let p of u)r.push(` ${p}`)}try{let p=wr(),y=[];for(let w of p)await vo(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} +`)}let h=[],m=null;try{m=JSON.parse(Me(["list"]))}catch(p){nt("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` -`)}async function kl(t,e,n,r){let s=Q(),i=j(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function _l(t,e,n,r){let s=Q(),i=j(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. -Type 'rebuild' to confirm: `),await Tl()!=="rebuild"&&(process.stderr.write(` +Type 'rebuild' to confirm: `),await Dl()!=="rebuild"&&(process.stderr.write(` Aborted. -`),process.exit(1)),yr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +`),process.exit(1)),wr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1));let l=s+".bak",d=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,d);let u=r?r.dimensions():n&&n.dimensions||hr,f=await k.createStore(u);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. -`);try{await Gt(e,n,r)}catch(u){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(d)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(d,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. +`),process.exit(1));let l=s+".bak",d=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,d);let u=r?r.dimensions():n&&n.dimensions||pr,f=await k.createStore(u);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`);try{await Yt(e,n,r)}catch(u){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(d)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(d,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. `)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. 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] [--topic ] [--dry-run] +`)}throw u}E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d)}function Dl(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Ml(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. Check the name, or run \`knowledge status\` to see what is indexed.`):s}let n=Q(),r=Dl(e);if(e.dryRun){if(!E.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) +`),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. Check the name, or run \`knowledge status\` to see what is indexed.`):s}let n=Q(),r=Nl(e);if(e.dryRun){if(!E.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) `);return}let s=await k.loadStore(n),i={work_unit:{eq:e.workUnit}};e.phase&&(i.phase={eq:e.phase}),e.topic&&(i.topic={eq:e.topic});let o=await k.countByFilter(s,i);process.stdout.write(`Would remove ${o} chunks for ${r} -`);return}if(await To(),!E.existsSync(n)){process.stdout.write(`Removed 0 chunks for ${r} -`);return}try{let s=await _o(e);process.stdout.write(`Removed ${s} chunks for ${r} -`)}catch(s){await ko(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). 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Queued for automatic retry on next remove/compact. +`),process.exit(1)}}function Nl(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Ul(t){try{let e=Me(["get",t,"status"]).trim(),n=null;try{n=Me(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){nt(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return nt(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Ol(t,e,n){await Do();let r=Q(),s=se(),i=n&&n.decay_months!==void 0?n.decay_months:me.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let d=await k.searchFulltext(c,{term:"",limit:1e5});if(d.length===0)return;let u={};for(let g of d)u[g.work_unit]||(u[g.work_unit]=[]),u[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(u)){let p=Ml(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=yl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` +`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let d=await k.searchFulltext(c,{term:"",limit:1e5});if(d.length===0)return;let u={};for(let g of d)u[g.work_unit]||(u[g.work_unit]=[]),u[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(u)){let p=Ul(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=xl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` `)+` `);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),x=new Set;for(let p of h){let y=`${p.work_unit}|${p.phase}|${p.topic}`;x.has(y)||(x.add(y),await k.removeByIdentity(g,p))}await k.saveStore(g,r)});let S=[];S.push(`Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)S.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(S.join(` `)+` -`)}async function Do(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(ar+` -`),process.exit(0));let{positional:e,flags:n,boosts:r}=Io(t),s=e[0],i=e.slice(1),o=bo(n,r);s||(process.stderr.write(ar+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await ml(i,o,c,a);break;case"query":await Al(i,o,c,a);break;case"check":await El(i,o,c,a);break;case"status":await vl();break;case"remove":await _l(i,o,c,a);break;case"compact":await Nl(i,o,c,a);break;case"rebuild":await kl(i,o,c,a);break;case"setup":await So.cmdSetup(Gt,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`)}async function No(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(lr+` +`),process.exit(0));let{positional:e,flags:n,boosts:r}=Ao(t),s=e[0],i=e.slice(1),o=Eo(n,r);s||(process.stderr.write(lr+` +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await yl(i,o,c,a);break;case"query":await vl(i,o,c,a);break;case"check":await kl(i,o,c,a);break;case"status":await Tl();break;case"remove":await Ml(i,o,c,a);break;case"compact":await Ol(i,o,c,a);break;case"rebuild":await _l(i,o,c,a);break;case"setup":await bo.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". -${ar} -`),process.exit(1)}}module.exports={parseArgs:Io,buildOptions:bo,deriveIdentity:pr,resolveProviderState:mr,withRetry:rt,UserError:U,main:Do,cmdIndexBulk:Gt,StubProvider:ll,OpenAIProvider:ul,store:k,chunker:xo,config:me,setup:So,knowledgeDir:Z,storePath:Q,metadataPath:j,lockFilePath:se,INDEXED_PHASES:fr,KEYWORD_ONLY_DIMENSIONS:hr};require.main===module&&Do().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +${lr} +`),process.exit(1)}}module.exports={parseArgs:Ao,buildOptions:Eo,deriveIdentity:mr,resolveProviderState:gr,withRetry:st,UserError:U,AuthError:Io,main:No,cmdIndexBulk:Yt,StubProvider:dl,OpenAIProvider:fl,store:k,chunker:So,config:me,setup:bo,knowledgeDir:Z,storePath:Q,metadataPath:j,lockFilePath:se,INDEXED_PHASES:hr,KEYWORD_ONLY_DIMENSIONS:pr};require.main===module&&No().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 021d24658..84f7388d1 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -11,7 +11,7 @@ const path = require('path'); const store = require('./store'); const chunker = require('./chunker'); const { StubProvider } = require('./embeddings'); -const { OpenAIProvider } = require('./providers/openai'); +const { OpenAIProvider, AuthError } = require('./providers/openai'); const config = require('./config'); const setup = require('./setup'); @@ -218,10 +218,11 @@ async function withRetry(fn, opts) { } catch (err) { // Don't retry programming errors — retrying a TypeError just burns // 7s of backoff before the stack trace reaches the user. - // Also don't retry UserError: these are user-input validation - // failures and will fail identically on every retry. + // Also don't retry UserError or AuthError: validation failures and + // bad/expired API keys will fail identically on every retry. if ( err instanceof UserError || + err instanceof AuthError || err instanceof TypeError || err instanceof ReferenceError || err instanceof SyntaxError || @@ -2001,6 +2002,7 @@ module.exports = { resolveProviderState, withRetry, UserError, + AuthError, main, cmdIndexBulk, StubProvider, diff --git a/src/knowledge/providers/openai.js b/src/knowledge/providers/openai.js index 41f83be65..545997f08 100644 --- a/src/knowledge/providers/openai.js +++ b/src/knowledge/providers/openai.js @@ -14,6 +14,16 @@ const DEFAULT_DIMENSIONS = 1536; const OPENAI_EMBEDDINGS_URL = 'https://api.openai.com/v1/embeddings'; const MAX_BATCH_SIZE = 2048; +// AuthError — marker class for HTTP 401/403 from the embeddings API. +// Bad/expired keys do not fix themselves between retries, so withRetry +// short-circuits this class instead of burning the backoff budget. +class AuthError extends Error { + constructor(message) { + super(message); + this.name = 'AuthError'; + } +} + class OpenAIProvider { /** * @param {{ apiKey: string, model?: string, dimensions?: number }} options @@ -134,10 +144,15 @@ class OpenAIProvider { } if (res.status === 401) { - throw new Error( + throw new AuthError( 'OpenAI API key is invalid or expired. Check your OPENAI_API_KEY environment variable.' ); } + if (res.status === 403) { + throw new AuthError( + `OpenAI API key lacks permission for this request (HTTP 403). ${detail}` + ); + } if (res.status === 429) { throw new Error( `OpenAI rate limit exceeded (HTTP 429). ${detail}` @@ -161,6 +176,7 @@ class OpenAIProvider { module.exports = { OpenAIProvider, + AuthError, DEFAULT_MODEL, DEFAULT_DIMENSIONS, MAX_BATCH_SIZE, diff --git a/tests/scripts/test-knowledge-openai.cjs b/tests/scripts/test-knowledge-openai.cjs index 1673d0540..e3af29d31 100644 --- a/tests/scripts/test-knowledge-openai.cjs +++ b/tests/scripts/test-knowledge-openai.cjs @@ -5,6 +5,7 @@ const assert = require('node:assert'); const { OpenAIProvider, + AuthError, DEFAULT_MODEL, DEFAULT_DIMENSIONS, } = require('../../src/knowledge/providers/openai'); @@ -85,13 +86,23 @@ describe('OpenAIProvider embed (mocked)', () => { assert.deepStrictEqual(result, fakeVector); }); - it('throws on 401 with descriptive message', async () => { + it('throws AuthError on 401 with descriptive message', async () => { globalThis.fetch = mockFetchError(401, 'Unauthorized'); const p = new OpenAIProvider({ apiKey: 'sk-bad' }); await assert.rejects( () => p.embed('hello'), - /OpenAI API key is invalid or expired/ + (err) => err instanceof AuthError && /OpenAI API key is invalid or expired/.test(err.message) + ); + }); + + it('throws AuthError on 403', async () => { + globalThis.fetch = mockFetchError(403, 'Forbidden'); + const p = new OpenAIProvider({ apiKey: 'sk-test' }); + + await assert.rejects( + () => p.embed('hello'), + (err) => err instanceof AuthError && /403/.test(err.message) ); }); diff --git a/tests/scripts/test-knowledge-retry.cjs b/tests/scripts/test-knowledge-retry.cjs index 29ac46438..ac518b55d 100644 --- a/tests/scripts/test-knowledge-retry.cjs +++ b/tests/scripts/test-knowledge-retry.cjs @@ -3,7 +3,7 @@ const { describe, it } = require('node:test'); const assert = require('node:assert'); -const { withRetry, UserError } = require('../../src/knowledge/index'); +const { withRetry, UserError, AuthError } = require('../../src/knowledge/index'); describe('withRetry', () => { it('succeeds on first attempt', async () => { @@ -119,4 +119,13 @@ describe('withRetry', () => { ); assert.strictEqual(calls, 1); }); + + it('does not retry AuthError', async () => { + let calls = 0; + await assert.rejects( + () => withRetry(async () => { calls++; throw new AuthError('bad key'); }, { maxAttempts: 3, backoff: [1, 1, 1] }), + (err) => err instanceof AuthError && /bad key/.test(err.message) + ); + assert.strictEqual(calls, 1); + }); }); From 2dcbed3567bb91bd843c0b7f4d9bc2c881405448 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:35:55 +0100 Subject: [PATCH 57/78] docs(knowledge): mark #5 (AuthError retry short-circuit) as landed Co-Authored-By: Claude Opus 4.7 (1M context) --- knowledge-base/post-audit-followups.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/knowledge-base/post-audit-followups.md b/knowledge-base/post-audit-followups.md index fd2319432..4733bfded 100644 --- a/knowledge-base/post-audit-followups.md +++ b/knowledge-base/post-audit-followups.md @@ -170,7 +170,7 @@ The other 9 entry-point sites (`start-bugfix`, `start-cross-cutting`, `start-epi ## Should-fixes (real correctness/UX issues, not introduced by the cleanup) -### #5 — OpenAI 401/403 errors are retried +### #5 — OpenAI 401/403 errors are retried (✅ commit `6cd6ccba`) **File:** `src/knowledge/providers/openai.js:136-148`, interaction with `src/knowledge/index.js:211-240` From 27a1b9f7eaf218fa44c8b5a707f0c8eebe1b80e2 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:54:30 +0100 Subject: [PATCH 58/78] fix(knowledge): validate API key before writing openai system config (#6) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Previously, runSystemConfigStep wrote `provider: openai` to the system config before ensureOpenAIKey had a chance to validate the key. When validation failed (bad env-var key, bad stored key the user opted to keep, inline-prompt skip-after-failure), the disk state ended up with `provider: openai` + no working key, so the next `knowledge index` surfaced a misleading "Provider/model changed — run rebuild" error. Reorder so the key is validated first; the system config is only written once a working key is in place. Three failure paths handled: - $OPENAI_API_KEY bad → abort with actionable message ("fix or unset it, then re-run setup"). Setup cannot reprompt for a shell-set key. - Stored credentials key bad + user opts not to replace → abort (keeping a known-bad key in openai mode is the same disk-state bug). - Inline prompt + user pastes bad + opts to skip retry → write stub-mode system config (preserves the documented "skip to proceed without a key" feature, but in stub mode rather than openai-with-no-key). Also sharpen the AuthError messages thrown by providers/openai.js to include "Run `knowledge setup` to fix" so workflow agents that hit a bad/expired key mid-task surface an actionable recovery hint. Reference: post-audit-followups.md #6. Co-Authored-By: Claude Opus 4.7 (1M context) --- .../workflow-knowledge/scripts/knowledge.cjs | 170 +++++++++--------- src/knowledge/providers/openai.js | 4 +- src/knowledge/setup.js | 66 ++++--- tests/scripts/test-knowledge-openai.cjs | 12 +- 4 files changed, 142 insertions(+), 110 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 724e5e044..76156abb4 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var Xt=Object.defineProperty;var Uo=Object.getOwnPropertyDescriptor;var Oo=Object.getOwnPropertyNames;var Po=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var we=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),te=(t,e)=>{for(var n in e)Xt(t,n,{get:e[n],enumerable:!0})},Ro=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of 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gi(t,e){return new _e(e).encodeSharedRef(t)}var yi=E(()=>{Yn()});function Bt(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var wi=E(()=>{});var xa,Sa,Ft,xi=E(()=>{Ot();xa=16,Sa=16,Ft=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=xa,n=Sa){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=$n(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Hn,Qe,Ii,Ia,Jn,Ze,Xn,ba,Si,Aa,K,zt=E(()=>{wi();$t();Ct();Ot();Gn();xi();Pt();Hn="array",Qe="map_key",Ii="map_value",Ia=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new $("The type of key must be string or number but "+typeof t)},Jn=class{stack=[];stackHeadPosition=-1;get length(){return 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this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${Bt(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new $(`Unrecognized type byte: ${Bt(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Hn)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===Qe){if(n==="__proto__")throw new $("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=Ii;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=Qe;continue e}}return n}}readHeadByte(){return this.headByte===Ze&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=Ze}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new $(`Unrecognized array type byte: ${Bt(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new $(`Max length exceeded: map 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r=this.view.getInt8(this.pos+n),s=this.decodeBinary(e,n+1);return this.extensionCodec.decode(s,r,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){let e=this.view.getUint8(this.pos);return this.pos++,e}readI8(){let e=this.view.getInt8(this.pos);return this.pos++,e}readU16(){let e=this.view.getUint16(this.pos);return this.pos+=2,e}readI16(){let e=this.view.getInt16(this.pos);return this.pos+=2,e}readU32(){let e=this.view.getUint32(this.pos);return this.pos+=4,e}readI32(){let e=this.view.getInt32(this.pos);return this.pos+=4,e}readU64(){let e=pi(this.view,this.pos);return this.pos+=8,e}readI64(){let e=Lt(this.view,this.pos);return this.pos+=8,e}readU64AsBigInt(){let e=this.view.getBigUint64(this.pos);return this.pos+=8,e}readI64AsBigInt(){let e=this.view.getBigInt64(this.pos);return this.pos+=8,e}readF32(){let e=this.view.getFloat32(this.pos);return this.pos+=4,e}readF64(){let e=this.view.getFloat64(this.pos);return this.pos+=8,e}}});function bi(t,e){return new K(e).decode(t)}function Ai(t,e){return new K(e).decodeMulti(t)}var vi=E(()=>{zt()});function va(t){return t[Symbol.asyncIterator]!=null}async function*Ea(t){let e=t.getReader();try{for(;;){let{done:n,value:r}=await e.read();if(n)return;yield r}}finally{e.releaseLock()}}function Vt(t){return va(t)?t:Ea(t)}var Ei=E(()=>{});async function ki(t,e){let n=Vt(t);return new K(e).decodeAsync(n)}function Ti(t,e){let n=Vt(t);return new K(e).decodeArrayStream(n)}function _i(t,e){let n=Vt(t);return new K(e).decodeStream(n)}var Di=E(()=>{zt();Ei()});var Mi={};te(Mi,{DecodeError:()=>$,Decoder:()=>K,EXT_TIMESTAMP:()=>Fn,Encoder:()=>_e,ExtData:()=>re,ExtensionCodec:()=>ce,decode:()=>bi,decodeArrayStream:()=>Ti,decodeAsync:()=>ki,decodeMulti:()=>Ai,decodeMultiStream:()=>_i,decodeTimestampExtension:()=>qn,decodeTimestampToTimeSpec:()=>jn,encode:()=>gi,encodeDateToTimeSpec:()=>Vn,encodeTimeSpecToTimestamp:()=>zn,encodeTimestampExtension:()=>Wn});var Ni=E(()=>{yi();vi();Di();zt();Pt();Yn();$t();Bn();Kn()});var er=we((xh,Li)=>{"use strict";var F=require("fs"),G=(li(),Sr(ai)),{encode:ka,decode:Ta}=(Ni(),Sr(Mi)),Zn=["id","content","work_unit","work_type","phase","topic","confidence","source_file","timestamp"];function Ui(t){if(!Number.isInteger(t)||t<=0)throw new Error(`createStore: dimensions must be a positive integer, got ${t}`);return{id:"string",content:"string",work_unit:"enum",work_type:"enum",phase:"enum",topic:"enum",confidence:"enum",source_file:"string",timestamp:"number",embedding:`vector[${t}]`}}async function _a(t){let e=Ui(t);return G.create({schema:e})}function Da(t){for(let e of Zn)if(t[e]===void 0||t[e]===null)throw new Error(`insertDocument: missing required field "${e}"`);if(typeof t.timestamp!="number"||!Number.isFinite(t.timestamp))throw new Error("insertDocument: timestamp must be a finite number (epoch ms)")}async function Ma(t,e){if(e==null||typeof e!="object")throw new Error("insertDocument: doc must be an object");Da(e);let n={};for(let r of Zn)n[r]=e[r];if("embedding"in e){if(e.embedding===null)throw new Error("insertDocument: embedding cannot be null (Orama crashes on null vectors). 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Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function rl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=or(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=tt.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{C.closeSync(a)}C.chmodSync(c,384),C.renameSync(c,t);try{C.chmodSync(t,384)}catch{}}function Qi(t,e){if(!t)return null;let n=Hi[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||Zi(),s;try{s=or(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function sl(t){let e=t&&t.systemPath||Ji(),n=t&&t.projectPath||Xi(),r=ir(e),s=ir(n),i=Object.assign({},Yi);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=Qi(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function il(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new tl(n!=null?{dimensions:n}:void 0)}if(!sr.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${sr.join(", ")}`);return t._api_key&&e==="openai"?new nl({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function ol(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=tt.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),C.renameSync(r,t)}eo.exports={DEFAULTS:Yi,AVAILABLE_PROVIDERS:sr,PROVIDER_ENV_VARS:Hi,systemConfigPath:Ji,projectConfigPath:Xi,credentialsPath:Zi,readConfigFile:ir,loadConfig:sl,loadCredentials:or,writeCredentials:rl,resolveApiKey:Qi,resolveProvider:il,writeConfigFile:ol}});var yo=we((vh,go)=>{"use strict";var le=require("fs"),ue=require("path"),cl=require("readline"),B=cr(),ar=er(),{OpenAIProvider:al}=Wt(),to="text-embedding-3-small",no=1536,ro=1536;function so(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function io(){let t=cl.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function jt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function io(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let d of l.toString("utf8")){if(d===` -`||d==="\r")return c(),s.write(` -`),n(o.trim());if(d===""){c(),s.write(` -`),process.exit(130);return}if(d==="")return c(),s.write(` -`),n(o.trim());if(d==="\x7F"||d==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}d<" "||(o+=d,s.write("*"))}};r.on("data",a)})}function oo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function co(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function ao(){return{knowledge:{}}}function lo(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function uo(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function qt({apiKey:t,model:e,dimensions:n}){let s=await new al({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Kt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function fo(t){let e=B.systemConfigPath(),n=lo(e);if(n.exists&&n.valid){process.stdout.write(` +`),t.close(),process.exit(130)}),t}function jt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function oo(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` +`||u==="\r")return c(),s.write(` +`),n(o.trim());if(u===""){c(),s.write(` +`),process.exit(130);return}if(u==="")return c(),s.write(` +`),n(o.trim());if(u==="\x7F"||u==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}u<" "||(o+=u,s.write("*"))}};r.on("data",a)})}function co({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function lr(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function ao(){return{knowledge:{}}}function lo(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function uo(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function qt({apiKey:t,model:e,dimensions:n}){let s=await new al({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Kt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function fo(t){let e=B.systemConfigPath(),n=lo(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: -`);let l=n.knowledge;if(process.stdout.write(` provider: ${l.provider==null?"(none \u2014 stub mode)":l.provider} -`),l.model&&process.stdout.write(` model: ${l.model} -`),l.dimensions&&process.stdout.write(` dimensions: ${l.dimensions} +`);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} +`),u.model&&process.stdout.write(` model: ${u.model} +`),u.dimensions&&process.stdout.write(` dimensions: ${u.dimensions} `),process.stdout.write(` `),!await De(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. -`),{provider:l.provider||null,previouslyStub:!l.provider}}else n.exists&&!n.valid?(process.stdout.write(` +`),{provider:u.provider||null,previouslyStub:!u.provider}}else n.exists&&!n.valid?(process.stdout.write(` System config at ${e} is not valid: ${n.reason} `),await De(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. `),process.exit(1))):process.stdout.write(` @@ -51,25 +51,29 @@ Embedding provider: `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) `);let s;for(;s=(await jt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return B.writeConfigFile(e,co()),process.stdout.write(` +`);if(s==="skip")return B.writeConfigFile(e,lr()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await jt(t,"Embedding model",eo),o=await jt(t,"Vector dimensions",String(to)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1)),B.writeConfigFile(e,oo({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await jt(t,"Embedding model",to),o=await jt(t,"Vector dimensions",String(no)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1));let a=B.PROVIDER_ENV_VARS.openai;return await ho(t,{envVar:a,model:i,dimensions:c})==="opted-out"?(B.writeConfigFile(e,lr()),process.stdout.write(` +Wrote stub-mode system config to ${e} +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Re-run `knowledge setup` once you have a working API key.\n"),{provider:null,previouslyStub:r}):(B.writeConfigFile(e,co({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`);let a=B.PROVIDER_ENV_VARS.openai;return await ho(t,{envVar:a,model:i,dimensions:c}),{provider:"openai",previouslyStub:r}}async function ho(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`),{provider:"openai",previouslyStub:r})}async function ho(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... -`);try{await qt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. -`)}catch(c){let{message:a,hint:l}=Kt(c);process.stdout.write(`${a} +`);try{return await qt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. +`),"validated"}catch(c){let{message:a,hint:l}=Kt(c);process.stderr.write(` +${a} ${l} -`),process.stdout.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. Setup will continue \u2014 indexing will queue until the key is corrected. -`)}return}let o=B.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` +`),process.stderr.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. +`),process.exit(1)}}let o=B.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` Found an existing API key in ${s} \u2014 validating via a test embed... -`);try{await qt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. -`);return}catch(c){let{message:a,hint:l}=Kt(c);if(process.stdout.write(`${a} +`);try{return await qt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. +`),"validated"}catch(c){let{message:a,hint:l}=Kt(c);process.stdout.write(`${a} ${l} -`),!await De(t,"Enter a new key to replace it?",!0)){process.stdout.write(`Keeping the existing stored key. Indexing will fail until it is rotated. +`),await De(t,"Enter a new key to replace it?",!0)||(process.stderr.write(` +Keeping the existing stored key would leave setup in an inconsistent state. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`);return}}}await ll(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function ll(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`),process.exit(1))}}return await ll(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function ll(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -85,17 +89,17 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await io(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await oo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... `);try{await qt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=Kt(o);if(process.stdout.write(`${c} ${a} -`),!await De(t,"Try a different key?",!0)){process.stdout.write(`No key stored. Setup continues but indexing will skip until a key is provided. -Set $${e} in your shell or re-run \`knowledge setup\`. -`);return}continue}B.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`);return}}async function po(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=uo(e);if(i.fullyInitialised){if(process.stdout.write(` +`),!await De(t,"Try a different key?",!0))return process.stdout.write(`No key stored. Falling back to stub mode \u2014 semantic search disabled. +Set $${e} in your shell or re-run \`knowledge setup\` once you have a working key. +`),"opted-out";continue}return B.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). +`),"validated"}}async function po(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=uo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await De(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -104,7 +108,7 @@ Project knowledge base partially initialised at ${e} `)):process.stdout.write(` Initialising project knowledge base at ${e} `);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,ao()),process.stdout.write(` config.json written -`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:no;if(!i.storeExists||i.fullyInitialised){let l=await ar.createStore(a);await ar.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) +`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:ro;if(!i.storeExists||i.fullyInitialised){let l=await ar.createStore(a);await ar.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) `)}return(!i.metadataExists||i.fullyInitialised)&&(ar.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written `)),{created:!0,provider:c,dimensions:a}}async function mo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` Initial indexing @@ -112,18 +116,18 @@ Initial indexing `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function ul(t,e,n){ro();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=so(),i;try{process.stdout.write(` +`)}}async function ul(t,e,n){so();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=io(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== `),i=await fo(s),await po(s)}finally{s.close()}await mo(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}go.exports={cmdSetup:ul,requireTTY:ro,createPrompter:so,ask:jt,askYesNo:De,askSecret:io,buildSystemConfigOpenAI:oo,buildSystemConfigStub:co,buildProjectConfigEmpty:ao,detectSystemConfig:lo,detectProjectInit:uo,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:ho,runSystemConfigStep:fo,runProjectInitStep:po,runInitialIndexStep:mo,KEYWORD_ONLY_DIMENSIONS:no,OPENAI_DEFAULT_MODEL:eo,OPENAI_DEFAULT_DIMENSIONS:to}});var E=require("fs"),z=require("path"),k=er(),So=Fi(),{StubProvider:dl}=nr(),{OpenAIProvider:fl,AuthError:Io}=Wt(),me=cr(),bo=yo(),hr=["research","discussion","investigation","specification"],hl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}go.exports={cmdSetup:ul,requireTTY:so,createPrompter:io,ask:jt,askYesNo:De,askSecret:oo,buildSystemConfigOpenAI:co,buildSystemConfigStub:lr,buildProjectConfigEmpty:ao,detectSystemConfig:lo,detectProjectInit:uo,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:ho,runSystemConfigStep:fo,runProjectInitStep:po,runInitialIndexStep:mo,KEYWORD_ONLY_DIMENSIONS:ro,OPENAI_DEFAULT_MODEL:to,OPENAI_DEFAULT_DIMENSIONS:no}});var v=require("fs"),z=require("path"),k=er(),So=zi(),{StubProvider:dl}=nr(),{OpenAIProvider:fl,AuthError:Io}=Wt(),me=cr(),bo=yo(),pr=["research","discussion","investigation","specification"],hl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(v.existsSync(t))return t;if(v.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],pl=5,dr=10,pr=1536,wo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function Ao(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],pl=5,fr=10,mr=1536,wo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function Ao(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -149,77 +153,77 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results --dry-run Preview without making changes - --help, -h Show this usage and exit 0`;function Z(){return z.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return z.join(Z(),"store.msp")}function j(){return z.join(Z(),"metadata.json")}function se(){return z.join(Z(),".lock")}function ml(t){return new Promise(e=>setTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;isetTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;iyr(s,o,n,r),{maxAttempts:3,backoff:rt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await To(n,r,pl)}async function yr(t,e,n,r){let s=gl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=So.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. 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Added to pending queue. + Current config has no provider configured.`)}async function yl(t,e,n,r){if(t.length===0)return Yt(e,n,r);let s=t[0],i=z.resolve(s);v.existsSync(i)||(process.stderr.write(`File not found: ${i} +`),process.exit(1));let o=gr(s),c=await st(()=>wr(s,o,n,r),{maxAttempts:3,backoff:rt});process.stdout.write(`Indexed ${c} chunks from ${s} +`),await To(n,r,pl)}async function wr(t,e,n,r){let s=gl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!v.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(v.readFileSync(i,"utf8")),c=z.resolve(t),a=v.readFileSync(c,"utf8"),l=So.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. 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Added to pending queue. `),f.stack&&!(f instanceof U)&&process.stderr.write(f.stack+` -`)}}await To(e,n,1/0),process.stdout.write(`Indexed ${a} files (${l} chunks). ${d} already indexed. -`)}async function ko(t,e){let n=j(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Gt(t){let e=j(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function To(t,e,n){let r=j();if(!E.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=dr){process.stderr.write(`Pending item ${o.file} exceeded ${dr} attempts \u2014 evicting. 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Last error: ${o.error} +`),await Gt(o.file);continue}let c=z.resolve(o.file);if(!v.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. +`),await Gt(o.file);continue}let a;try{a=gr(o.file)}catch{await Gt(o.file);continue}try{await st(()=>wr(o.file,a,t,e),{maxAttempts:3,backoff:rt}),await Gt(o.file)}catch(l){await ko(o.file,l.message)}}}var hr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function _o(t,e){let n=j(),r=Z(),s=se();v.existsSync(r)||v.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;v.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function xo(t){let e=j(),n=se();v.existsSync(e)&&await k.withLock(n,async()=>{if(!v.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function Do(){let t=j();if(!v.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=hr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${hr} attempts \u2014 evicting. `),await xo(r);continue}try{await Mo({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. -`),await xo(r)}catch(s){try{await _o({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Mo(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var wl={high:4,medium:3,"low-medium":2,low:1};function xl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Sl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var ur={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},Il=.1;function bl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=Il);let c=wl[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Al(t){let e=[];for(let n of t)(!n.field||!ur[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". 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Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. 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Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),v.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=xr(),y=[];for(let w of p)await Eo(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} `)}let h=[],m=null;try{m=JSON.parse(Me(["list"]))}catch(p){nt("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` `)}async function _l(t,e,n,r){let s=Q(),i=j(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. Type 'rebuild' to confirm: `),await Dl()!=="rebuild"&&(process.stderr.write(` Aborted. -`),process.exit(1)),wr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +`),process.exit(1)),xr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1));let l=s+".bak",d=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,d);let u=r?r.dimensions():n&&n.dimensions||pr,f=await k.createStore(u);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. -`);try{await Yt(e,n,r)}catch(u){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(d)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(d,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. +`),process.exit(1));let l=s+".bak",u=i+".bak";await k.withLock(o,async()=>{v.existsSync(l)&&v.unlinkSync(l),v.existsSync(u)&&v.unlinkSync(u),v.existsSync(s)&&v.renameSync(s,l),v.existsSync(i)&&v.renameSync(i,u);let d=r?r.dimensions():n&&n.dimensions||mr,f=await k.createStore(d);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`);try{await Yt(e,n,r)}catch(d){try{await k.withLock(o,async()=>{v.existsSync(l)&&(v.existsSync(s)&&v.unlinkSync(s),v.renameSync(l,s)),v.existsSync(u)&&(v.existsSync(i)&&v.unlinkSync(i),v.renameSync(u,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. `)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. Previous index is at: ${l} - ${d} + ${u} Rename them back manually to recover. Rollback error: ${f.message} -`)}throw u}E.existsSync(l)&&E.unlinkSync(l),E.existsSync(d)&&E.unlinkSync(d)}function Dl(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Ml(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] +`)}throw d}v.existsSync(l)&&v.unlinkSync(l),v.existsSync(u)&&v.unlinkSync(u)}function Dl(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Ml(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. Check the name, or run \`knowledge status\` to see what is indexed.`):s}let n=Q(),r=Nl(e);if(e.dryRun){if(!E.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) +`),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. Check the name, or run \`knowledge status\` to see what is indexed.`):s}let n=Q(),r=Nl(e);if(e.dryRun){if(!v.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) `);return}let s=await k.loadStore(n),i={work_unit:{eq:e.workUnit}};e.phase&&(i.phase={eq:e.phase}),e.topic&&(i.topic={eq:e.topic});let o=await k.countByFilter(s,i);process.stdout.write(`Would remove ${o} chunks for ${r} -`);return}if(await Do(),!E.existsSync(n)){process.stdout.write(`Removed 0 chunks for ${r} +`);return}if(await Do(),!v.existsSync(n)){process.stdout.write(`Removed 0 chunks for ${r} `);return}try{let s=await Mo(e);process.stdout.write(`Removed ${s} chunks for ${r} `)}catch(s){await _o(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. `),process.exit(1)}}function Nl(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Ul(t){try{let e=Me(["get",t,"status"]).trim(),n=null;try{n=Me(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){nt(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return nt(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Ol(t,e,n){await Do();let r=Q(),s=se(),i=n&&n.decay_months!==void 0?n.decay_months:me.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let d=await k.searchFulltext(c,{term:"",limit:1e5});if(d.length===0)return;let u={};for(let g of d)u[g.work_unit]||(u[g.work_unit]=[]),u[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(u)){let p=Ul(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=xl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` +`),process.exit(1));let o=i;if(!v.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchFulltext(c,{term:"",limit:1e5});if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(d)){let p=Ul(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=xl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` `)+` `);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),x=new Set;for(let p of h){let y=`${p.work_unit}|${p.phase}|${p.topic}`;x.has(y)||(x.add(y),await k.removeByIdentity(g,p))}await k.saveStore(g,r)});let S=[];S.push(`Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)S.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(S.join(` `)+` -`)}async function No(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(lr+` -`),process.exit(0));let{positional:e,flags:n,boosts:r}=Ao(t),s=e[0],i=e.slice(1),o=Eo(n,r);s||(process.stderr.write(lr+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await yl(i,o,c,a);break;case"query":await vl(i,o,c,a);break;case"check":await kl(i,o,c,a);break;case"status":await Tl();break;case"remove":await Ml(i,o,c,a);break;case"compact":await Ol(i,o,c,a);break;case"rebuild":await _l(i,o,c,a);break;case"setup":await bo.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`)}async function No(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(ur+` +`),process.exit(0));let{positional:e,flags:n,boosts:r}=Ao(t),s=e[0],i=e.slice(1),o=vo(n,r);s||(process.stderr.write(ur+` +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await yl(i,o,c,a);break;case"query":await El(i,o,c,a);break;case"check":await kl(i,o,c,a);break;case"status":await Tl();break;case"remove":await Ml(i,o,c,a);break;case"compact":await Ol(i,o,c,a);break;case"rebuild":await _l(i,o,c,a);break;case"setup":await bo.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". -${lr} -`),process.exit(1)}}module.exports={parseArgs:Ao,buildOptions:Eo,deriveIdentity:mr,resolveProviderState:gr,withRetry:st,UserError:U,AuthError:Io,main:No,cmdIndexBulk:Yt,StubProvider:dl,OpenAIProvider:fl,store:k,chunker:So,config:me,setup:bo,knowledgeDir:Z,storePath:Q,metadataPath:j,lockFilePath:se,INDEXED_PHASES:hr,KEYWORD_ONLY_DIMENSIONS:pr};require.main===module&&No().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +${ur} +`),process.exit(1)}}module.exports={parseArgs:Ao,buildOptions:vo,deriveIdentity:gr,resolveProviderState:yr,withRetry:st,UserError:U,AuthError:Io,main:No,cmdIndexBulk:Yt,StubProvider:dl,OpenAIProvider:fl,store:k,chunker:So,config:me,setup:bo,knowledgeDir:Z,storePath:Q,metadataPath:j,lockFilePath:se,INDEXED_PHASES:pr,KEYWORD_ONLY_DIMENSIONS:mr};require.main===module&&No().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/providers/openai.js b/src/knowledge/providers/openai.js index 545997f08..a75cd3f54 100644 --- a/src/knowledge/providers/openai.js +++ b/src/knowledge/providers/openai.js @@ -145,12 +145,12 @@ class OpenAIProvider { if (res.status === 401) { throw new AuthError( - 'OpenAI API key is invalid or expired. Check your OPENAI_API_KEY environment variable.' + 'OpenAI API key is invalid or expired. Run `knowledge setup` to fix.' ); } if (res.status === 403) { throw new AuthError( - `OpenAI API key lacks permission for this request (HTTP 403). ${detail}` + `OpenAI API key lacks permission for this request (HTTP 403). Run \`knowledge setup\` to fix. ${detail}` ); } if (res.status === 429) { diff --git a/src/knowledge/setup.js b/src/knowledge/setup.js index 011106dda..9de24fa2c 100644 --- a/src/knowledge/setup.js +++ b/src/knowledge/setup.js @@ -369,15 +369,31 @@ async function runSystemConfigStep(rl) { process.exit(1); } - // Write the non-secret config first so it's on disk even if the key - // step aborts or the user interrupts mid-prompt. - config.writeConfigFile(sysPath, buildSystemConfigOpenAI({ model, dimensions })); - process.stdout.write(`\nWrote system config to ${sysPath}\n`); - - // Resolve the API key: env first, then credentials file, then prompt. + // Resolve and validate the API key BEFORE writing any system config. + // Writing `provider: openai` to disk with no working key leaves the + // system in a state where the next `knowledge index` misreports a + // provider/model change. ensureOpenAIKey aborts on irrecoverable + // failures (bad env var, bad stored key kept) and returns a status + // for the recoverable cases. const envVar = config.PROVIDER_ENV_VARS.openai; - await ensureOpenAIKey(rl, { envVar, model, dimensions }); + const keyStatus = await ensureOpenAIKey(rl, { envVar, model, dimensions }); + if (keyStatus === 'opted-out') { + // User explicitly chose to skip past the inline prompt without a + // working key. Honour the "skip to proceed without" feature by + // writing stub-mode system config rather than openai-with-no-key. + config.writeConfigFile(sysPath, buildSystemConfigStub()); + process.stdout.write(`\nWrote stub-mode system config to ${sysPath}\n`); + process.stdout.write( + 'Stub mode uses keyword-only (BM25) search. Semantic search is disabled. ' + + 'Re-run `knowledge setup` once you have a working API key.\n' + ); + return { provider: null, previouslyStub }; + } + + // keyStatus === 'validated' — safe to commit the openai config. + config.writeConfigFile(sysPath, buildSystemConfigOpenAI({ model, dimensions })); + process.stdout.write(`\nWrote system config to ${sysPath}\n`); return { provider: 'openai', previouslyStub }; } @@ -385,6 +401,14 @@ async function runSystemConfigStep(rl) { * Ensure an OpenAI API key is available for this run and validate it. * Resolution order: process.env → credentials file → inline prompt. * Newly entered keys are written to the credentials file at 0600. + * + * Returns: + * 'validated' — a working key is in place (env, file, or freshly stored) + * 'opted-out' — user explicitly skipped after a failed inline prompt + * + * Aborts (process.exit 1) on irrecoverable failures: bad env-var key, or + * bad stored key that the user opts to keep. Both leave the system in a + * state where openai-mode setup cannot honestly proceed. */ async function ensureOpenAIKey(rl, { envVar, model, dimensions }) { const credPath = config.credentialsPath(); @@ -396,16 +420,16 @@ async function ensureOpenAIKey(rl, { envVar, model, dimensions }) { try { await validateApiKey({ apiKey: fromEnv.trim(), model, dimensions }); process.stdout.write('API key works.\n'); + return 'validated'; } catch (err) { const { message, hint } = describeValidationError(err); - process.stdout.write(`${message}\n ${hint}\n`); - process.stdout.write( + process.stderr.write(`\n${message}\n ${hint}\n`); + process.stderr.write( `The failing key came from $${envVar}. Fix or unset it in your shell, ` + - 'then re-run `knowledge setup`. Setup will continue — indexing will queue until ' + - 'the key is corrected.\n' + 'then re-run `knowledge setup`.\n' ); + process.exit(1); } - return; } // 2. Existing credentials file. Validate; let the user replace it if broken. @@ -415,24 +439,24 @@ async function ensureOpenAIKey(rl, { envVar, model, dimensions }) { try { await validateApiKey({ apiKey: fromFile, model, dimensions }); process.stdout.write('API key works.\n'); - return; + return 'validated'; } catch (err) { const { message, hint } = describeValidationError(err); process.stdout.write(`${message}\n ${hint}\n`); const replace = await askYesNo(rl, 'Enter a new key to replace it?', true); if (!replace) { - process.stdout.write( - 'Keeping the existing stored key. Indexing will fail until it is rotated.\n' + + process.stderr.write( + `\nKeeping the existing stored key would leave setup in an inconsistent state.\n` + `Edit ${credPath} or re-run \`knowledge setup\` when you have a new key.\n` ); - return; + process.exit(1); } // Fall through to prompt path to collect and store a replacement. } } // 3. No valid key anywhere — prompt inline and store. - await promptForKeyAndStore(rl, { envVar, model, dimensions, credPath }); + return await promptForKeyAndStore(rl, { envVar, model, dimensions, credPath }); } /** @@ -475,10 +499,10 @@ async function promptForKeyAndStore(rl, { envVar, model, dimensions, credPath }) const retry = await askYesNo(rl, 'Try a different key?', true); if (!retry) { process.stdout.write( - 'No key stored. Setup continues but indexing will skip until a key is provided.\n' + - `Set $${envVar} in your shell or re-run \`knowledge setup\`.\n` + `No key stored. Falling back to stub mode — semantic search disabled.\n` + + `Set $${envVar} in your shell or re-run \`knowledge setup\` once you have a working key.\n` ); - return; + return 'opted-out'; } continue; } @@ -486,7 +510,7 @@ async function promptForKeyAndStore(rl, { envVar, model, dimensions, credPath }) // Validated — write the credentials file. config.writeCredentials(credPath, 'openai', key); process.stdout.write(`API key works. Stored at ${credPath} (mode 0600).\n`); - return; + return 'validated'; } } diff --git a/tests/scripts/test-knowledge-openai.cjs b/tests/scripts/test-knowledge-openai.cjs index e3af29d31..cd3f2e87d 100644 --- a/tests/scripts/test-knowledge-openai.cjs +++ b/tests/scripts/test-knowledge-openai.cjs @@ -86,23 +86,27 @@ describe('OpenAIProvider embed (mocked)', () => { assert.deepStrictEqual(result, fakeVector); }); - it('throws AuthError on 401 with descriptive message', async () => { + it('throws AuthError on 401 with descriptive message and recovery hint', async () => { globalThis.fetch = mockFetchError(401, 'Unauthorized'); const p = new OpenAIProvider({ apiKey: 'sk-bad' }); await assert.rejects( () => p.embed('hello'), - (err) => err instanceof AuthError && /OpenAI API key is invalid or expired/.test(err.message) + (err) => + err instanceof AuthError && + /invalid or expired/.test(err.message) && + /knowledge setup/.test(err.message) ); }); - it('throws AuthError on 403', async () => { + it('throws AuthError on 403 with recovery hint', async () => { globalThis.fetch = mockFetchError(403, 'Forbidden'); const p = new OpenAIProvider({ apiKey: 'sk-test' }); await assert.rejects( () => p.embed('hello'), - (err) => err instanceof AuthError && /403/.test(err.message) + (err) => + err instanceof AuthError && /403/.test(err.message) && /knowledge setup/.test(err.message) ); }); From ea971306e50777b4246a1bb425bf812309a55fb8 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:54:37 +0100 Subject: [PATCH 59/78] docs(knowledge): mark #6 (validate-before-write) as landed Co-Authored-By: Claude Opus 4.7 (1M context) --- knowledge-base/post-audit-followups.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/knowledge-base/post-audit-followups.md b/knowledge-base/post-audit-followups.md index 4733bfded..3dbc964c0 100644 --- a/knowledge-base/post-audit-followups.md +++ b/knowledge-base/post-audit-followups.md @@ -195,7 +195,7 @@ Option 1 is consistent with how UserError is used elsewhere (validation failures --- -### #6 — Setup writes openai config before validating the key +### #6 — Setup writes openai config before validating the key (✅ commit `27a1b9f7`) **Files:** `src/knowledge/setup.js:374-407` (`runSystemConfigStep`), `:543-552` (`runProjectInitStep`) From 3ecd1f1e60266665523d28ebbfd69954d1d25777 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 13:59:55 +0100 Subject: [PATCH 60/78] fix(knowledge): rewrite metadata when partial-state forces a new store (#7) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit When metadata.json exists but store.msp does not (interrupted prior init, manual deletion, partial cleanup), runProjectInitStep would re-create the store but skip the metadata write — leaving a fresh empty store paired with stale metadata pointing at the prior run's provider/model/dimensions. The next `knowledge index` then surfaced the same misleading "Provider/model changed — run rebuild" error that #6 fixed for the system-config side. Tighten the metadata-write condition so it always runs when a new store was just written. Captured as `wroteStore` so the same signal gates both writes. Reference: post-audit-followups.md #7. Co-Authored-By: Claude Opus 4.7 (1M context) --- skills/workflow-knowledge/scripts/knowledge.cjs | 4 ++-- src/knowledge/setup.js | 10 +++++++--- 2 files changed, 9 insertions(+), 5 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 76156abb4..f69e7a7a4 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -108,8 +108,8 @@ Project knowledge base partially initialised at ${e} `)):process.stdout.write(` Initialising project knowledge base at ${e} `);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,ao()),process.stdout.write(` config.json written -`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:ro;if(!i.storeExists||i.fullyInitialised){let l=await ar.createStore(a);await ar.saveStore(l,r),process.stdout.write(` store.msp written (${a} dimensions) -`)}return(!i.metadataExists||i.fullyInitialised)&&(ar.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written +`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:ro,l=!i.storeExists||i.fullyInitialised;if(l){let u=await ar.createStore(a);await ar.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) +`)}return(!i.metadataExists||i.fullyInitialised||l)&&(ar.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written `)),{created:!0,provider:c,dimensions:a}}async function mo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- diff --git a/src/knowledge/setup.js b/src/knowledge/setup.js index 9de24fa2c..785ad8eff 100644 --- a/src/knowledge/setup.js +++ b/src/knowledge/setup.js @@ -557,14 +557,18 @@ async function runProjectInitStep(rl) { : KEYWORD_ONLY_DIMENSIONS; // Create empty store and save. - if (!detected.storeExists || detected.fullyInitialised) { + const wroteStore = !detected.storeExists || detected.fullyInitialised; + if (wroteStore) { const db = await store.createStore(dims); await store.saveStore(db, storeFile); process.stdout.write(` store.msp written (${dims} dimensions)\n`); } - // Write initial metadata. - if (!detected.metadataExists || detected.fullyInitialised) { + // Write initial metadata. Also rewrite whenever a new store was just + // created — stale metadata paired with a fresh empty store surfaces + // as a misleading "Provider/model changed — run rebuild" error on + // the next `knowledge index` (the partial-state recovery case). + if (!detected.metadataExists || detected.fullyInitialised || wroteStore) { store.writeMetadata(metadataFile, { provider: provider || null, model: provider && cfg.model ? cfg.model : null, From 9b0ba424cced3cef7fd6d0e9a51bc1bbb5c3bcdb Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:00:03 +0100 Subject: [PATCH 61/78] docs(skills): include scoping in contextual-query header (#13) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Header listed research, discussion, and investigation as the loading phases. Scoping (the quick-fix entry phase) also loads this reference since Minor #9 of the cleanup pass — bring the list in sync. Reference: post-audit-followups.md #13. Co-Authored-By: Claude Opus 4.7 (1M context) --- skills/workflow-knowledge/references/contextual-query.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/skills/workflow-knowledge/references/contextual-query.md b/skills/workflow-knowledge/references/contextual-query.md index 905ad5423..9f7c76463 100644 --- a/skills/workflow-knowledge/references/contextual-query.md +++ b/skills/workflow-knowledge/references/contextual-query.md @@ -1,6 +1,6 @@ # Contextual Query -*Reference for **[workflow-knowledge](../SKILL.md)** — loaded at phase start in research, discussion, and investigation processing skills.* +*Reference for **[workflow-knowledge](../SKILL.md)** — loaded at phase start in research, discussion, investigation, and scoping processing skills.* --- From 84899506c4c66a25efeb693d3a3ccf4c0b1fa017 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:00:11 +0100 Subject: [PATCH 62/78] docs(knowledge): mark #7 and #13 as landed Co-Authored-By: Claude Opus 4.7 (1M context) --- knowledge-base/post-audit-followups.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/knowledge-base/post-audit-followups.md b/knowledge-base/post-audit-followups.md index 3dbc964c0..76d2b0434 100644 --- a/knowledge-base/post-audit-followups.md +++ b/knowledge-base/post-audit-followups.md @@ -220,7 +220,7 @@ Note: `validateApiKey` already exists and does a real test embed call. The bug i --- -### #7 — Setup partial-state recovery gap +### #7 — Setup partial-state recovery gap (✅ commit `3ecd1f1e`) **File:** `src/knowledge/setup.js:536-552` @@ -323,7 +323,7 @@ Or: when registry says "not found" but chunks exist for that WU in the store, ro ## Minor / polish (skip-by-default unless paired with a related fix) -### #13 — `contextual-query.md:3` header stale +### #13 — `contextual-query.md:3` header stale (✅ commit `9b0ba424`) Says "loaded at phase start in research, discussion, and investigation processing skills" — but is also loaded by scoping (per Minor #9 of the cleanup). Update header to include scoping. From 8d7432fb661cd7c4a4313958a5e7f7a3f308dc75 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:14:34 +0100 Subject: [PATCH 63/78] fix(knowledge): paginate whole-store enumeration; raise per-query cap (#8, #9) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Previously, six call sites used `limit: 100000` on Orama empty-term searches. Stores beyond 100k chunks would have those reads silently truncate — wrong status totals, wrong compact decisions, and on the per-topic helpers, leaked chunks across re-indexes. Two-shape fix: - Whole-store enumeration (`searchAllFulltext`, used by cmdStatus and cmdCompact): paginate via offset+limit until exhausted. There is no upper bound — the store can be arbitrarily large. - Filtered single-shot reads (findInternalIdsByIdentity, removeByFilter, countByFilter): keep using Orama's indexed `where` clause and raise the cap to FILTERED_QUERY_LIMIT (1M). Orama 3.1.x's offset+where pagination drops pages, so a single high-limit shot is the right shape; per-identity / per-topic / per-phase chunk counts are bounded in practice. Note: also pass `batchSize == ids.length` to orama.removeMultiple so the sync path returns the accurate total (Orama's sync removeMultiple chains batches via setTimeout but reports the count after only the first 1000-doc batch — exposed by the > 1000 removal test below). Add a store-level test that pins both contracts: paginated unfiltered enumeration returns every doc, and filtered reads (count + remove) surface every match. Seeds 2500 docs to force pagination and to exercise the > 1000 remove batch case. Reference: post-audit-followups.md #8, #9. Co-Authored-By: Claude Opus 4.7 (1M context) --- .../workflow-knowledge/scripts/knowledge.cjs | 166 +++++++++--------- src/knowledge/index.js | 4 +- src/knowledge/store.js | 58 +++++- tests/scripts/test-knowledge-store.cjs | 39 ++++ 4 files changed, 176 insertions(+), 91 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index f69e7a7a4..d8665106c 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,38 +1,38 @@ -"use strict";var Xt=Object.defineProperty;var Uo=Object.getOwnPropertyDescriptor;var Oo=Object.getOwnPropertyNames;var Po=Object.prototype.hasOwnProperty;var E=(t,e)=>()=>(t&&(e=t(t=0)),e);var we=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),te=(t,e)=>{for(var n in e)Xt(t,n,{get:e[n],enumerable:!0})},Ro=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of 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gi(t,e){return new _e(e).encodeSharedRef(t)}var yi=E(()=>{Yn()});function Bt(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var wi=E(()=>{});var xa,Sa,Ft,xi=E(()=>{Ot();xa=16,Sa=16,Ft=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=xa,n=Sa){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=$n(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Hn,Qe,Ii,Ia,Jn,Ze,Xn,ba,Si,Aa,K,zt=E(()=>{wi();$t();Ct();Ot();Gn();xi();Pt();Hn="array",Qe="map_key",Ii="map_value",Ia=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new $("The type of key must be string or number but "+typeof t)},Jn=class{stack=[];stackHeadPosition=-1;get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(e){let n=this.getUninitializedStateFromPool();n.type=Hn,n.position=0,n.size=e,n.array=new Array(e)}pushMapState(e){let n=this.getUninitializedStateFromPool();n.type=Qe,n.readCount=0,n.size=e,n.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){let e={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(e)}return this.stack[this.stackHeadPosition]}release(e){if(this.stack[this.stackHeadPosition]!==e)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(e.type===Hn){let r=e;r.size=0,r.array=void 0,r.position=0,r.type=void 0}if(e.type===Qe||e.type===Ii){let r=e;r.size=0,r.map=void 0,r.readCount=0,r.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}},Ze=-1,Xn=new DataView(new ArrayBuffer(0)),ba=new Uint8Array(Xn.buffer);try{Xn.getInt8(0)}catch(t){if(!(t instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}Si=new RangeError("Insufficient data"),Aa=new Ft,K=class t{extensionCodec;context;useBigInt64;rawStrings;maxStrLength;maxBinLength;maxArrayLength;maxMapLength;maxExtLength;keyDecoder;mapKeyConverter;totalPos=0;pos=0;view=Xn;bytes=ba;headByte=Ze;stack=new Jn;entered=!1;constructor(e){this.extensionCodec=e?.extensionCodec??ce.defaultCodec,this.context=e?.context,this.useBigInt64=e?.useBigInt64??!1,this.rawStrings=e?.rawStrings??!1,this.maxStrLength=e?.maxStrLength??4294967295,this.maxBinLength=e?.maxBinLength??4294967295,this.maxArrayLength=e?.maxArrayLength??4294967295,this.maxMapLength=e?.maxMapLength??4294967295,this.maxExtLength=e?.maxExtLength??4294967295,this.keyDecoder=e?.keyDecoder!==void 0?e.keyDecoder:Aa,this.mapKeyConverter=e?.mapKeyConverter??Ia}clone(){return new t({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=Ze,this.stack.reset()}setBuffer(e){let n=Je(e);this.bytes=n,this.view=new 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this.clone().decodeAsync(e);try{this.entered=!0;let n=!1,r;for await(let c of e){if(n)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(c);try{r=this.doDecodeSync(),n=!0}catch(a){if(!(a instanceof RangeError))throw a}this.totalPos+=this.pos}if(n){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return r}let{headByte:s,pos:i,totalPos:o}=this;throw new RangeError(`Insufficient data in parsing ${Bt(s)} at ${o} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(e){return this.decodeMultiAsync(e,!0)}decodeStream(e){return this.decodeMultiAsync(e,!1)}async*decodeMultiAsync(e,n){if(this.entered){yield*this.clone().decodeMultiAsync(e,n);return}try{this.entered=!0;let r=n,s=-1;for await(let i of e){if(n&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),r&&(s=this.readArraySize(),r=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(o){if(!(o instanceof RangeError))throw o}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){e:for(;;){let e=this.readHeadByte(),n;if(e>=224)n=e-256;else if(e<192)if(e<128)n=e;else if(e<144){let s=e-128;if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e<160){let s=e-144;if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else{let s=e-160;n=this.decodeString(s,0)}else if(e===192)n=null;else if(e===194)n=!1;else if(e===195)n=!0;else if(e===202)n=this.readF32();else if(e===203)n=this.readF64();else if(e===204)n=this.readU8();else if(e===205)n=this.readU16();else if(e===206)n=this.readU32();else if(e===207)this.useBigInt64?n=this.readU64AsBigInt():n=this.readU64();else if(e===208)n=this.readI8();else if(e===209)n=this.readI16();else if(e===210)n=this.readI32();else if(e===211)this.useBigInt64?n=this.readI64AsBigInt():n=this.readI64();else if(e===217){let s=this.lookU8();n=this.decodeString(s,1)}else if(e===218){let s=this.lookU16();n=this.decodeString(s,2)}else if(e===219){let s=this.lookU32();n=this.decodeString(s,4)}else if(e===220){let s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===221){let s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue e}else n=[]}else if(e===222){let s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===223){let s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue e}else n={}}else if(e===196){let s=this.lookU8();n=this.decodeBinary(s,1)}else if(e===197){let s=this.lookU16();n=this.decodeBinary(s,2)}else if(e===198){let s=this.lookU32();n=this.decodeBinary(s,4)}else if(e===212)n=this.decodeExtension(1,0);else if(e===213)n=this.decodeExtension(2,0);else if(e===214)n=this.decodeExtension(4,0);else if(e===215)n=this.decodeExtension(8,0);else if(e===216)n=this.decodeExtension(16,0);else if(e===199){let s=this.lookU8();n=this.decodeExtension(s,1)}else if(e===200){let s=this.lookU16();n=this.decodeExtension(s,2)}else if(e===201){let s=this.lookU32();n=this.decodeExtension(s,4)}else throw new $(`Unrecognized type byte: ${Bt(e)}`);this.complete();let r=this.stack;for(;r.length>0;){let s=r.top();if(s.type===Hn)if(s.array[s.position]=n,s.position++,s.position===s.size)n=s.array,r.release(s);else continue e;else if(s.type===Qe){if(n==="__proto__")throw new $("The key __proto__ is not allowed");s.key=this.mapKeyConverter(n),s.type=Ii;continue e}else if(s.map[s.key]=n,s.readCount++,s.readCount===s.size)n=s.map,r.release(s);else{s.key=null,s.type=Qe;continue e}}return n}}readHeadByte(){return this.headByte===Ze&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=Ze}readArraySize(){let e=this.readHeadByte();switch(e){case 220:return this.readU16();case 221:return this.readU32();default:{if(e<160)return e-144;throw new $(`Unrecognized array type byte: ${Bt(e)}`)}}}pushMapState(e){if(e>this.maxMapLength)throw new $(`Max length exceeded: map 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Re-run `knowledge setup` once you have a working API key.\n"),{provider:null,previouslyStub:r}):(B.writeConfigFile(e,co({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Re-run `knowledge setup` once you have a working API key.\n"),{provider:null,previouslyStub:r}):(B.writeConfigFile(e,lo({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`),{provider:"openai",previouslyStub:r})}async function ho(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`),{provider:"openai",previouslyStub:r})}async function mo(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... -`);try{return await qt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. -`),"validated"}catch(c){let{message:a,hint:l}=Kt(c);process.stderr.write(` +`);try{return await Kt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. +`),"validated"}catch(c){let{message:a,hint:l}=Gt(c);process.stderr.write(` ${a} ${l} `),process.stderr.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. `),process.exit(1)}}let o=B.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` Found an existing API key in ${s} \u2014 validating via a test embed... -`);try{return await qt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. -`),"validated"}catch(c){let{message:a,hint:l}=Kt(c);process.stdout.write(`${a} +`);try{return await Kt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. +`),"validated"}catch(c){let{message:a,hint:l}=Gt(c);process.stdout.write(`${a} ${l} `),await De(t,"Enter a new key to replace it?",!0)||(process.stderr.write(` Keeping the existing stored key would leave setup in an inconsistent state. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`),process.exit(1))}}return await ll(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function ll(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`),process.exit(1))}}return await fl(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function fl(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -89,17 +89,17 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await oo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await ao(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... -`);try{await qt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=Kt(o);if(process.stdout.write(`${c} +`);try{await Kt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=Gt(o);if(process.stdout.write(`${c} ${a} `),!await De(t,"Try a different key?",!0))return process.stdout.write(`No key stored. Falling back to stub mode \u2014 semantic search disabled. Set $${e} in your shell or re-run \`knowledge setup\` once you have a working key. `),"opted-out";continue}return B.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`),"validated"}}async function po(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=uo(e);if(i.fullyInitialised){if(process.stdout.write(` +`),"validated"}}async function go(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=ho(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await De(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -107,27 +107,27 @@ Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,ao()),process.stdout.write(` config.json written -`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:ro,l=!i.storeExists||i.fullyInitialised;if(l){let u=await ar.createStore(a);await ar.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) -`)}return(!i.metadataExists||i.fullyInitialised||l)&&(ar.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function mo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` +`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,uo()),process.stdout.write(` config.json written +`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:io,l=!i.storeExists||i.fullyInitialised;if(l){let u=await lr.createStore(a);await lr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) +`)}return(!i.metadataExists||i.fullyInitialised||l)&&(lr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written +`)),{created:!0,provider:c,dimensions:a}}async function yo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function ul(t,e,n){so();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=io(),i;try{process.stdout.write(` +`)}}async function hl(t,e,n){oo();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=co(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await fo(s),await po(s)}finally{s.close()}await mo(t,n),process.stdout.write(` +`),i=await po(s),await go(s)}finally{s.close()}await yo(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}go.exports={cmdSetup:ul,requireTTY:so,createPrompter:io,ask:jt,askYesNo:De,askSecret:oo,buildSystemConfigOpenAI:co,buildSystemConfigStub:lr,buildProjectConfigEmpty:ao,detectSystemConfig:lo,detectProjectInit:uo,validateApiKey:qt,describeValidationError:Kt,ensureOpenAIKey:ho,runSystemConfigStep:fo,runProjectInitStep:po,runInitialIndexStep:mo,KEYWORD_ONLY_DIMENSIONS:ro,OPENAI_DEFAULT_MODEL:to,OPENAI_DEFAULT_DIMENSIONS:no}});var v=require("fs"),z=require("path"),k=er(),So=zi(),{StubProvider:dl}=nr(),{OpenAIProvider:fl,AuthError:Io}=Wt(),me=cr(),bo=yo(),pr=["research","discussion","investigation","specification"],hl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(v.existsSync(t))return t;if(v.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}wo.exports={cmdSetup:hl,requireTTY:oo,createPrompter:co,ask:qt,askYesNo:De,askSecret:ao,buildSystemConfigOpenAI:lo,buildSystemConfigStub:ur,buildProjectConfigEmpty:uo,detectSystemConfig:fo,detectProjectInit:ho,validateApiKey:Kt,describeValidationError:Gt,ensureOpenAIKey:mo,runSystemConfigStep:po,runProjectInitStep:go,runInitialIndexStep:yo,KEYWORD_ONLY_DIMENSIONS:io,OPENAI_DEFAULT_MODEL:ro,OPENAI_DEFAULT_DIMENSIONS:so}});var E=require("fs"),z=require("path"),k=tr(),bo=Wi(),{StubProvider:pl}=rr(),{OpenAIProvider:ml,AuthError:Ao}=jt(),me=ar(),Eo=xo(),mr=["research","discussion","investigation","specification"],gl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],pl=5,fr=10,mr=1536,wo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function Ao(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],yl=5,hr=10,gr=1536,So=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function vo(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -153,77 +153,77 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results --dry-run Preview without making changes - --help, -h Show this usage and exit 0`;function Z(){return z.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return z.join(Z(),"store.msp")}function j(){return z.join(Z(),"metadata.json")}function se(){return z.join(Z(),".lock")}function ml(t){return new Promise(e=>setTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;isetTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;iwr(s,o,n,r),{maxAttempts:3,backoff:rt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await To(n,r,pl)}async function wr(t,e,n,r){let s=gl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!v.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(v.readFileSync(i,"utf8")),c=z.resolve(t),a=v.readFileSync(c,"utf8"),l=So.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. 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Removing from queue. -`),await Gt(o.file);continue}let a;try{a=gr(o.file)}catch{await Gt(o.file);continue}try{await st(()=>wr(o.file,a,t,e),{maxAttempts:3,backoff:rt}),await Gt(o.file)}catch(l){await ko(o.file,l.message)}}}var hr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function _o(t,e){let n=j(),r=Z(),s=se();v.existsSync(r)||v.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;v.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function xo(t){let e=j(),n=se();v.existsSync(e)&&await k.withLock(n,async()=>{if(!v.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function Do(){let t=j();if(!v.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=hr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${hr} attempts \u2014 evicting. -`),await xo(r);continue}try{await Mo({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. -`),await xo(r)}catch(s){try{await _o({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Mo(t){let e=Q(),n=se();if(!v.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var wl={high:4,medium:3,"low-medium":2,low:1};function xl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Sl(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var dr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},Il=.1;function bl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=Il);let c=wl[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function Al(t){let e=[];for(let n of t)(!n.field||!dr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(dr).join(", ")} +`)}}await Do(e,n,1/0),process.stdout.write(`Indexed ${a} files (${l} chunks). ${u} already indexed. +`)}async function _o(t,e){let n=q(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Yt(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function Do(t,e,n){let r=q();if(!E.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=hr){process.stderr.write(`Pending item ${o.file} exceeded ${hr} attempts \u2014 evicting. Last error: ${o.error} +`),await Yt(o.file);continue}let c=z.resolve(o.file);if(!E.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. +`),await Yt(o.file);continue}let a;try{a=yr(o.file)}catch{await Yt(o.file);continue}try{await st(()=>xr(o.file,a,t,e),{maxAttempts:3,backoff:rt}),await Yt(o.file)}catch(l){await _o(o.file,l.message)}}}var pr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function Mo(t,e){let n=q(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function Io(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function No(){let t=q();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=pr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${pr} attempts \u2014 evicting. +`),await Io(r);continue}try{await Uo({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. +`),await Io(r)}catch(s){try{await Mo({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Uo(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var Il={high:4,medium:3,"low-medium":2,low:1};function bl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Al(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var fr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},El=.1;function vl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=El);let c=Il[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function kl(t){let e=[];for(let n of t)(!n.field||!fr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". 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Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. 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Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),E.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=Sr(),y=[];for(let w of p)await To(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} `)}let h=[],m=null;try{m=JSON.parse(Me(["list"]))}catch(p){nt("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` `)+` -`)}async function _l(t,e,n,r){let s=Q(),i=j(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. +`)}async function Nl(t,e,n,r){let s=Q(),i=q(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. -Type 'rebuild' to confirm: `),await Dl()!=="rebuild"&&(process.stderr.write(` +Type 'rebuild' to confirm: `),await Ul()!=="rebuild"&&(process.stderr.write(` Aborted. -`),process.exit(1)),xr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +`),process.exit(1)),Sr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1));let l=s+".bak",u=i+".bak";await k.withLock(o,async()=>{v.existsSync(l)&&v.unlinkSync(l),v.existsSync(u)&&v.unlinkSync(u),v.existsSync(s)&&v.renameSync(s,l),v.existsSync(i)&&v.renameSync(i,u);let d=r?r.dimensions():n&&n.dimensions||mr,f=await k.createStore(d);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. -`);try{await Yt(e,n,r)}catch(d){try{await k.withLock(o,async()=>{v.existsSync(l)&&(v.existsSync(s)&&v.unlinkSync(s),v.renameSync(l,s)),v.existsSync(u)&&(v.existsSync(i)&&v.unlinkSync(i),v.renameSync(u,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. +`),process.exit(1));let l=s+".bak",u=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,u);let d=r?r.dimensions():n&&n.dimensions||gr,f=await k.createStore(d);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`);try{await Ht(e,n,r)}catch(d){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(u)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(u,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. `)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. Previous index is at: ${l} ${u} Rename them back manually to recover. Rollback error: ${f.message} -`)}throw d}v.existsSync(l)&&v.unlinkSync(l),v.existsSync(u)&&v.unlinkSync(u)}function Dl(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Ml(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] +`)}throw d}E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u)}function Ul(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Ol(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. Check the name, or run \`knowledge status\` to see what is indexed.`):s}let n=Q(),r=Nl(e);if(e.dryRun){if(!v.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) +`),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. Check the name, or run \`knowledge status\` to see what is indexed.`):s}let n=Q(),r=Pl(e);if(e.dryRun){if(!E.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) `);return}let s=await k.loadStore(n),i={work_unit:{eq:e.workUnit}};e.phase&&(i.phase={eq:e.phase}),e.topic&&(i.topic={eq:e.topic});let o=await k.countByFilter(s,i);process.stdout.write(`Would remove ${o} chunks for ${r} -`);return}if(await Do(),!v.existsSync(n)){process.stdout.write(`Removed 0 chunks for ${r} -`);return}try{let s=await Mo(e);process.stdout.write(`Removed ${s} chunks for ${r} -`)}catch(s){await _o(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. -`),process.exit(1)}}function Nl(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Ul(t){try{let e=Me(["get",t,"status"]).trim(),n=null;try{n=Me(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){nt(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return nt(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Ol(t,e,n){await Do();let r=Q(),s=se(),i=n&&n.decay_months!==void 0?n.decay_months:me.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled +`);return}if(await No(),!E.existsSync(n)){process.stdout.write(`Removed 0 chunks for ${r} +`);return}try{let s=await Uo(e);process.stdout.write(`Removed ${s} chunks for ${r} +`)}catch(s){await Mo(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. +`),process.exit(1)}}function Pl(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Rl(t){try{let e=Me(["get",t,"status"]).trim(),n=null;try{n=Me(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){nt(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return nt(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Ll(t,e,n){await No();let r=Q(),s=se(),i=n&&n.decay_months!==void 0?n.decay_months:me.DEFAULTS.decay_months;if(i===!1){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!v.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchFulltext(c,{term:"",limit:1e5});if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(d)){let p=Ul(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=xl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` +`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchAllFulltext(c);if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(d)){let p=Rl(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=bl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` `)+` `);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),x=new Set;for(let p of h){let y=`${p.work_unit}|${p.phase}|${p.topic}`;x.has(y)||(x.add(y),await k.removeByIdentity(g,p))}await k.saveStore(g,r)});let S=[];S.push(`Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)S.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(S.join(` `)+` -`)}async function No(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(ur+` -`),process.exit(0));let{positional:e,flags:n,boosts:r}=Ao(t),s=e[0],i=e.slice(1),o=vo(n,r);s||(process.stderr.write(ur+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await yl(i,o,c,a);break;case"query":await El(i,o,c,a);break;case"check":await kl(i,o,c,a);break;case"status":await Tl();break;case"remove":await Ml(i,o,c,a);break;case"compact":await Ol(i,o,c,a);break;case"rebuild":await _l(i,o,c,a);break;case"setup":await bo.cmdSetup(Yt,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`)}async function Oo(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(dr+` +`),process.exit(0));let{positional:e,flags:n,boosts:r}=vo(t),s=e[0],i=e.slice(1),o=ko(n,r);s||(process.stderr.write(dr+` +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await Sl(i,o,c,a);break;case"query":await _l(i,o,c,a);break;case"check":await Dl(i,o,c,a);break;case"status":await Ml();break;case"remove":await Ol(i,o,c,a);break;case"compact":await Ll(i,o,c,a);break;case"rebuild":await Nl(i,o,c,a);break;case"setup":await Eo.cmdSetup(Ht,i,o);break;default:process.stderr.write(`Unknown command "${s}". -${ur} -`),process.exit(1)}}module.exports={parseArgs:Ao,buildOptions:vo,deriveIdentity:gr,resolveProviderState:yr,withRetry:st,UserError:U,AuthError:Io,main:No,cmdIndexBulk:Yt,StubProvider:dl,OpenAIProvider:fl,store:k,chunker:So,config:me,setup:bo,knowledgeDir:Z,storePath:Q,metadataPath:j,lockFilePath:se,INDEXED_PHASES:pr,KEYWORD_ONLY_DIMENSIONS:mr};require.main===module&&No().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +${dr} +`),process.exit(1)}}module.exports={parseArgs:vo,buildOptions:ko,deriveIdentity:yr,resolveProviderState:wr,withRetry:st,UserError:U,AuthError:Ao,main:Oo,cmdIndexBulk:Ht,StubProvider:pl,OpenAIProvider:ml,store:k,chunker:bo,config:me,setup:Eo,knowledgeDir:Z,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:mr,KEYWORD_ONLY_DIMENSIONS:gr};require.main===module&&Oo().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 84f7388d1..c0579e32a 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1379,7 +1379,7 @@ async function cmdStatus() { } const db = await store.loadStore(sp); - const allChunks = await store.searchFulltext(db, { term: '', limit: 100000 }); + const allChunks = await store.searchAllFulltext(db); // 1. Index summary. out.push(`Total chunks: ${allChunks.length}`); @@ -1865,7 +1865,7 @@ async function cmdCompact(_args, options, cfg) { cutoffDate.setMonth(cutoffDate.getMonth() - decayMonths); // Discover unique work units in the store by searching for all docs. - const allResults = await store.searchFulltext(db, { term: '', limit: 100000 }); + const allResults = await store.searchAllFulltext(db); if (allResults.length === 0) return; // Group by work unit. diff --git a/src/knowledge/store.js b/src/knowledge/store.js index cb52bb559..7fecbf427 100644 --- a/src/knowledge/store.js +++ b/src/knowledge/store.js @@ -112,10 +112,51 @@ async function insertDocument(db, doc) { return orama.insert(db, payload); } +// Page size for whole-store enumeration. Paged iteration replaces a +// previous fixed `limit: 100000` so very large stores are not silently +// truncated. 1000 keeps round-trip overhead negligible for in-process +// Orama while bounding peak memory per page. +const ENUMERATION_PAGE_SIZE = 1000; + +// Limit for filtered single-shot reads. Orama's `where` clause is an +// indexed lookup — the matched subset is small in practice (one identity, +// one phase, one work unit), so a single search with a high limit is the +// right shape. Pagination is reserved for unfiltered whole-store +// enumeration because Orama 3.1.x's offset+where combination drops pages. +// +// 1M is well above any realistic per-identity / per-topic / per-phase +// chunk count (a giant topic might have low thousands; a per-work-unit +// remove on a long-lived project, low tens of thousands). Orama +// pre-allocates an array of size `limit` for results, so this cannot be +// `Number.MAX_SAFE_INTEGER` — it would throw RangeError. +const FILTERED_QUERY_LIMIT = 1_000_000; + +/** + * Enumerate every document in the store, paged via offset+limit until + * exhausted. Used by status, compact, and any caller that needs a + * complete unfiltered view. Filtered enumerations should call Orama's + * `where` directly with an unbounded limit (see findInternalIdsByIdentity). + */ +async function searchAllFulltext(db) { + const all = []; + let offset = 0; + while (true) { + const res = await orama.search(db, { + term: '', + limit: ENUMERATION_PAGE_SIZE, + offset, + }); + if (res.hits.length === 0) break; + all.push(...res.hits.map(normaliseHit)); + if (res.hits.length < ENUMERATION_PAGE_SIZE) break; + offset += ENUMERATION_PAGE_SIZE; + } + return all; +} + /** * Find all internal document IDs whose (work_unit, phase, topic) matches - * the given identity key. Uses Orama's search with `where` filters and - * a large limit so we get every match in one pass. + * the given identity key. Internal IDs are what `removeMultiple` accepts. */ async function findInternalIdsByIdentity(db, { work_unit, phase, topic }) { const res = await orama.search(db, { @@ -125,7 +166,7 @@ async function findInternalIdsByIdentity(db, { work_unit, phase, topic }) { phase: { eq: phase }, topic: { eq: topic }, }, - limit: 100000, + limit: FILTERED_QUERY_LIMIT, }); return res.hits.map((h) => h.id); } @@ -164,11 +205,15 @@ async function removeByFilter(db, where) { const res = await orama.search(db, { term: '', where, - limit: 100000, + limit: FILTERED_QUERY_LIMIT, }); const ids = res.hits.map((h) => h.id); if (ids.length === 0) return 0; - const removed = await orama.removeMultiple(db, ids); + // Orama's sync removeMultiple chains batches via setTimeout but + // returns the result count after only the first batch — pass + // batchSize == ids.length to force a single batch and get an + // accurate total when removing > 1000 chunks. + const removed = await orama.removeMultiple(db, ids, ids.length); return removed; } @@ -184,7 +229,7 @@ async function countByFilter(db, where) { const res = await orama.search(db, { term: '', where, - limit: 100000, + limit: FILTERED_QUERY_LIMIT, }); return res.hits.length; } @@ -492,6 +537,7 @@ module.exports = { removeByFilter, countByFilter, searchFulltext, + searchAllFulltext, searchVector, searchHybrid, saveStore, diff --git a/tests/scripts/test-knowledge-store.cjs b/tests/scripts/test-knowledge-store.cjs index c99d96b88..940e039d4 100644 --- a/tests/scripts/test-knowledge-store.cjs +++ b/tests/scripts/test-knowledge-store.cjs @@ -10,7 +10,10 @@ const { createStore, insertDocument, removeByIdentity, + removeByFilter, + countByFilter, searchFulltext, + searchAllFulltext, searchVector, searchHybrid, saveStore, @@ -337,6 +340,42 @@ describe('knowledge store', () => { }); assert.deepStrictEqual(hits, []); }); + + // Pin two contracts the previous `limit: 100000` cap silently relied on: + // 1. Whole-store enumeration (searchAllFulltext) must paginate so it + // returns every doc regardless of count. + // 2. Filtered single-shot reads (countByFilter, removeByFilter) must + // surface every match, not stop at an internal cap. + // Seeding 2500 docs forces both to handle counts above any single + // Orama batch (and above the previous 100k cap if Orama ever changes + // its internal page defaults). + it('whole-store enumeration and filtered reads return every match (no truncation)', async () => { + const db = await createStore(STUB_DIMS); + const TOTAL = 2500; // > ENUMERATION_PAGE_SIZE (1000) — forces multiple pages + for (let i = 0; i < TOTAL; i++) { + await insertDocument(db, makeDoc({ + id: `page-${i}`, + work_unit: i % 2 === 0 ? 'wu-even' : 'wu-odd', + })); + } + + // 1. Paginated whole-store enumeration returns every document. + const all = await searchAllFulltext(db); + assert.strictEqual(all.length, TOTAL, 'searchAllFulltext returns every document'); + const allIds = new Set(all.map((h) => h.id)); + assert.strictEqual(allIds.size, TOTAL, 'no duplicate IDs across paginated results'); + + // 2. Filtered reads via Orama's where clause return every match. + const evenCount = await countByFilter(db, { work_unit: { eq: 'wu-even' } }); + assert.strictEqual(evenCount, TOTAL / 2); + + // 3. removeByFilter removes every match (including the > 1000 batch case + // that exposed Orama's sync removeMultiple count bug). + const removed = await removeByFilter(db, { work_unit: { eq: 'wu-odd' } }); + assert.strictEqual(removed, TOTAL / 2); + const remaining = await searchAllFulltext(db); + assert.strictEqual(remaining.length, TOTAL / 2); + }); }); // --------------------------------------------------------------------------- From 6c87a83e59277527a822ed562d4431db36e73dd9 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:14:42 +0100 Subject: [PATCH 64/78] docs(knowledge): mark #8 and #9 as landed Co-Authored-By: Claude Opus 4.7 (1M context) --- knowledge-base/post-audit-followups.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/knowledge-base/post-audit-followups.md b/knowledge-base/post-audit-followups.md index 76d2b0434..76af20f70 100644 --- a/knowledge-base/post-audit-followups.md +++ b/knowledge-base/post-audit-followups.md @@ -238,7 +238,7 @@ Note: `validateApiKey` already exists and does a real test embed call. The bug i ## Defer (real but non-blocking; log as deferred-issue or fix later) -### #8 — Whole-store enumeration capped at 100k +### #8 — Whole-store enumeration capped at 100k (✅ commit `8d7432fb`) **Files:** `src/knowledge/index.js:1379, 1865`; `src/knowledge/store.js:128, 167, 187` @@ -255,7 +255,7 @@ Note: `validateApiKey` already exists and does a real test embed call. The bug i --- -### #9 — Empty-term `searchFulltext` is undocumented Orama behaviour with no test +### #9 — Empty-term `searchFulltext` is undocumented Orama behaviour with no test (✅ commit `8d7432fb`) **Files:** `src/knowledge/store.js:122, 165, 187`; `src/knowledge/index.js:635, 1379, 1865` From c556adfe65c5a66d248ff0908800f1ea0ea9bdc8 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:15:57 +0100 Subject: [PATCH 65/78] fix(knowledge): reject partial-numeric input for vector dimensions (#15) parseInt('1536abc', 10) returns 1536, after which Number.isInteger passes and the partly-valid input is silently stored as the dimensions field. Add a /^\d+$/ regex check before parseInt so partial-numeric input is caught up front. Reference: post-audit-followups.md #15. Co-Authored-By: Claude Opus 4.7 (1M context) --- skills/workflow-knowledge/scripts/knowledge.cjs | 3 ++- src/knowledge/setup.js | 6 ++++++ 2 files changed, 8 insertions(+), 1 deletion(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index d8665106c..3c27464b5 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -53,7 +53,8 @@ Embedding provider: `);let s;for(;s=(await qt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". `);if(s==="skip")return B.writeConfigFile(e,ur()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await qt(t,"Embedding model",ro),o=await qt(t,"Vector dimensions",String(so)),c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await qt(t,"Embedding model",ro),o=await qt(t,"Vector dimensions",String(so));/^\d+$/.test(o.trim())||(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.exit(1));let c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. `),process.exit(1));let a=B.PROVIDER_ENV_VARS.openai;return await mo(t,{envVar:a,model:i,dimensions:c})==="opted-out"?(B.writeConfigFile(e,ur()),process.stdout.write(` Wrote stub-mode system config to ${e} `),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Re-run `knowledge setup` once you have a working API key.\n"),{provider:null,previouslyStub:r}):(B.writeConfigFile(e,lo({model:i,dimensions:c})),process.stdout.write(` diff --git a/src/knowledge/setup.js b/src/knowledge/setup.js index 785ad8eff..b4279c732 100644 --- a/src/knowledge/setup.js +++ b/src/knowledge/setup.js @@ -363,6 +363,12 @@ async function runSystemConfigStep(rl) { // openai path. const model = await ask(rl, 'Embedding model', OPENAI_DEFAULT_MODEL); const dimsRaw = await ask(rl, 'Vector dimensions', String(OPENAI_DEFAULT_DIMENSIONS)); + // parseInt is lenient ('1536abc' → 1536); insist on a clean digits-only + // string before parsing so partial-numeric input is rejected up front. + if (!/^\d+$/.test(dimsRaw.trim())) { + process.stderr.write(`Invalid dimensions: "${dimsRaw}". Must be a positive integer.\n`); + process.exit(1); + } const dimensions = parseInt(dimsRaw, 10); if (!Number.isInteger(dimensions) || dimensions <= 0) { process.stderr.write(`Invalid dimensions: "${dimsRaw}". Must be a positive integer.\n`); From 842db9661c78396d996fea09b8615ad3c34b4c38 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:16:52 +0100 Subject: [PATCH 66/78] fix(knowledge): treat decay_months: null as disabled (#16) cmdCompact only accepted `false` or a non-negative integer. A user who hand-edits config and writes `null` to disable compaction (intuitive JSON for "no value") got a hard error. Treat null the same as false since both signal "no compaction". Reference: post-audit-followups.md #16. Co-Authored-By: Claude Opus 4.7 (1M context) --- skills/workflow-knowledge/scripts/knowledge.cjs | 2 +- src/knowledge/index.js | 9 +++++---- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 3c27464b5..11dd026c0 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -214,7 +214,7 @@ Rename them back manually to recover. Rollback error: ${f.message} `);return}if(await No(),!E.existsSync(n)){process.stdout.write(`Removed 0 chunks for ${r} `);return}try{let s=await Uo(e);process.stdout.write(`Removed ${s} chunks for ${r} `)}catch(s){await Mo(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). 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Accept only: false (disabled) or non-negative integer. - // Reject strings, negatives, NaN, non-integers — these would silently - // produce either no-op (NaN cutoff) or mass deletion (negative cutoff). + // Check decay config. Accept: false or null (both disable), or a + // non-negative integer. Reject strings, negatives, NaN, non-integers + // — these would silently produce either no-op (NaN cutoff) or mass + // deletion (negative cutoff). const rawDecay = cfg && cfg.decay_months !== undefined ? cfg.decay_months : config.DEFAULTS.decay_months; - if (rawDecay === false) { + if (rawDecay === false || rawDecay === null) { process.stdout.write('Compaction disabled\n'); return; } From 246b24e13ad2e7d85406ba84c11f5502ce66786b Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:17:53 +0100 Subject: [PATCH 67/78] fix(knowledge): resolve orphan check relative to project root (#17) cmdStatus's orphan detection called fs.existsSync(path.resolve(c.source_file)) which resolves the stored relative path against process.cwd(). Running `knowledge status` from a subdirectory of the project then reports every chunk as orphaned. Resolve relative to the project root (computed from knowledgeDir's parent-of-parent) instead. 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Removing from queue. -`),await Yt(o.file);continue}let a;try{a=yr(o.file)}catch{await Yt(o.file);continue}try{await st(()=>xr(o.file,a,t,e),{maxAttempts:3,backoff:rt}),await Yt(o.file)}catch(l){await _o(o.file,l.message)}}}var pr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function Mo(t,e){let n=q(),r=Z(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function Io(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function No(){let t=q();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=pr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${pr} attempts \u2014 evicting. +`)}async function _o(t,e){let n=q(),r=Y(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Yt(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function Do(t,e,n){let r=q();if(!E.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=hr){process.stderr.write(`Pending item ${o.file} exceeded ${hr} attempts \u2014 evicting. Last error: ${o.error} +`),await Yt(o.file);continue}let c=F.resolve(o.file);if(!E.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. +`),await Yt(o.file);continue}let a;try{a=yr(o.file)}catch{await Yt(o.file);continue}try{await st(()=>xr(o.file,a,t,e),{maxAttempts:3,backoff:rt}),await Yt(o.file)}catch(l){await _o(o.file,l.message)}}}var pr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function Mo(t,e){let n=q(),r=Y(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function Io(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function No(){let t=q();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=pr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${pr} attempts \u2014 evicting. `),await Io(r);continue}try{await Uo({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. `),await Io(r)}catch(s){try{await Mo({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Uo(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var Il={high:4,medium:3,"low-medium":2,low:1};function bl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Al(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var fr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},El=.1;function vl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=El);let c=Il[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function kl(t){let e=[];for(let n of t)(!n.field||!fr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(fr).join(", ")} `),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value @@ -180,20 +180,20 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== Current config has no provider configured.`);let o=n.model(),c=n.dimensions();if(r===e.provider&&s===o&&i===c)return{mode:"full",provider:n};throw new U(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store: provider=${r}, model=${s}, dimensions=${i} Config: provider=${e.provider}, model=${o}, dimensions=${c}`)}async function _l(t,e,n,r){t.length===0&&(process.stderr.write(`Usage: knowledge query [...] [--work-unit ...] [--work-type ...] [--phase ...] [--topic ...] [--boost: ]... [--limit N] -`),process.exit(1));for(let I of t)if(typeof I!="string"||I.trim()==="")throw new U("Empty search term. `knowledge query` requires at least one non-empty positional term. If you intended to list everything indexed, use `knowledge status` instead.");let s=t,i=e.limit||10,o=Q(),c=q();if(!E.existsSync(o)){process.stdout.write(`[0 results] -`);return}let a=await k.loadStore(o),l="keyword-only",u=null,d=null;E.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=k.readMetadata(c),h=Tl(f,n,r);l=h.mode,u=h.provider,l==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":l==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let m={};if(e.phase){let I=e.phase.split(",").map(T=>T.trim());m.phase=I.length===1?{eq:I[0]}:{in:I}}if(e.workType){let I=e.workType.split(",").map(T=>T.trim());m.work_type=I.length===1?{eq:I[0]}:{in:I}}if(e.workUnit){let I=e.workUnit.split(",").map(T=>T.trim());m.work_unit=I.length===1?{eq:I[0]}:{in:I}}if(e.topic){let I=e.topic.split(",").map(T=>T.trim());m.topic=I.length===1?{eq:I[0]}:{in:I}}let S=n.similarity_threshold??.8,g=Object.keys(m).length>0?m:void 0,x=new Map;for(let I of s){let T;if(l==="full"&&u){let D=await st(()=>u.embed(I),{maxAttempts:3,backoff:rt});T=await k.searchHybrid(a,{term:I,vector:D,where:g,limit:i*2,similarity:S})}else T=await k.searchFulltext(a,{term:I,where:g,limit:i*2});for(let D of T){let _=x.get(D.id);(!_||D.score>_.score)&&x.set(D.id,D)}}let p=kl(e.boosts),y=vl(Array.from(x.values()),p);y.length>i&&(y=y.slice(0,i));let w=[];d&&w.push(d),w.push(`[${y.length} results]`);for(let I of y){w.push("");let T=Al(I.timestamp);w.push(`[${I.phase} | ${I.work_unit}/${I.topic} | ${I.confidence} | ${T}]`),w.push(I.content),w.push(`Source: ${I.source_file}`)}process.stdout.write(w.join(` +`),process.exit(1));for(let S of t)if(typeof S!="string"||S.trim()==="")throw new U("Empty search term. `knowledge query` requires at least one non-empty positional term. If you intended to list everything indexed, use `knowledge status` instead.");let s=t,i=e.limit||10,o=Q(),c=q();if(!E.existsSync(o)){process.stdout.write(`[0 results] +`);return}let a=await k.loadStore(o),l="keyword-only",u=null,d=null;E.existsSync(c)||(process.stderr.write("metadata.json missing but store exists. Run `knowledge rebuild` to fix.\n"),process.exit(1));let f=k.readMetadata(c),h=Tl(f,n,r);l=h.mode,u=h.provider,l==="keyword-only"?d="[keyword-only mode \u2014 configure embedding provider for semantic search]":l==="upgrade-available"&&(d="[keyword-only mode but embedding provider configured \u2014 run knowledge rebuild for full hybrid search]");let p={};if(e.phase){let S=e.phase.split(",").map(T=>T.trim());p.phase=S.length===1?{eq:S[0]}:{in:S}}if(e.workType){let S=e.workType.split(",").map(T=>T.trim());p.work_type=S.length===1?{eq:S[0]}:{in:S}}if(e.workUnit){let S=e.workUnit.split(",").map(T=>T.trim());p.work_unit=S.length===1?{eq:S[0]}:{in:S}}if(e.topic){let S=e.topic.split(",").map(T=>T.trim());p.topic=S.length===1?{eq:S[0]}:{in:S}}let x=n.similarity_threshold??.8,g=Object.keys(p).length>0?p:void 0,y=new Map;for(let S of s){let T;if(l==="full"&&u){let _=await st(()=>u.embed(S),{maxAttempts:3,backoff:rt});T=await k.searchHybrid(a,{term:S,vector:_,where:g,limit:i*2,similarity:x})}else T=await k.searchFulltext(a,{term:S,where:g,limit:i*2});for(let _ of T){let D=y.get(_.id);(!D||_.score>D.score)&&y.set(_.id,_)}}let I=kl(e.boosts),m=vl(Array.from(y.values()),I);m.length>i&&(m=m.slice(0,i));let w=[];d&&w.push(d),w.push(`[${m.length} results]`);for(let S of m){w.push("");let T=Al(S.timestamp);w.push(`[${S.phase} | ${S.work_unit}/${S.topic} | ${S.confidence} | ${T}]`),w.push(S.content),w.push(`Source: ${S.source_file}`)}process.stdout.write(w.join(` `)+` -`)}async function Dl(){let t=Z(),e=z.join(t,"config.json"),n=Q();if(!E.existsSync(t)){process.stdout.write(`not-ready +`)}async function Dl(){let t=Y(),e=F.join(t,"config.json"),n=Q();if(!E.existsSync(t)){process.stdout.write(`not-ready `);return}if(!E.existsSync(e)){process.stdout.write(`not-ready `);return}try{me.readConfigFile(e)}catch(r){process.stderr.write(`config error: ${r.message} `),process.stdout.write(`not-ready `);return}if(!E.existsSync(n)){process.stdout.write(`not-ready `);return}try{await k.loadStore(n)}catch{process.stdout.write(`not-ready `);return}process.stdout.write(`ready -`)}async function Ml(){let t=Z(),e=Q(),n=q(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!E.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` +`)}async function Ml(){let t=Y(),e=Q(),n=q(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!E.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await k.loadStore(e),i=await k.searchAllFulltext(s);r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let p of i)o[p.work_unit]=(o[p.work_unit]||0)+1,c[p.phase]=(c[p.phase]||0)+1,a[p.work_type]=(a[p.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[p,y]of Object.entries(o))r.push(` ${p}: ${y}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[p,y]of Object.entries(c))r.push(` ${p}: ${y}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[p,y]of Object.entries(a))r.push(` ${p}: ${y}`)}r.push("");let u=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),E.existsSync(n)){let p=k.readMetadata(n);if(r.push(`Last indexed: ${p.last_indexed||"unknown"}`),p.provider?(r.push(`Provider: ${p.provider} (model: ${p.model}, dimensions: ${p.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(p.pending)&&p.pending.length>0){r.push(""),r.push(`Pending items: ${p.pending.length}`);for(let w of p.pending){let I=w.attempts||1;r.push(` ${w.file} \u2014 ${w.error} (attempt ${I}/${hr}, ${w.failed_at})`)}}if(Array.isArray(p.pending_removals)&&p.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${p.pending_removals.length}`);for(let w of p.pending_removals)r.push(` ${ge(w)} \u2014 ${w.error} (attempt ${w.attempts||1}/${pr})`)}let y;try{y=me.loadConfig()}catch{y=null}if(y){let w=me.resolveProvider(y);p.provider&&w&&(p.provider!==y.provider||p.model!==w.model()||p.dimensions!==w.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(p.provider===null||p.provider===void 0)&&w&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=[],f=new Set;for(let p of i)f.has(p.source_file)||(f.add(p.source_file),E.existsSync(z.resolve(p.source_file))||d.push(p.source_file));if(d.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${d.length} files`);for(let p of d)r.push(` ${p}`)}try{let p=Sr(),y=[];for(let w of p)await To(s,w.workUnit,w.phase,w.topic)||y.push(w.file);if(y.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${y.length}`);for(let w of y)r.push(` ${w}`)}}catch(p){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${p.message} -`)}let h=[],m=null;try{m=JSON.parse(Me(["list"]))}catch(p){nt("cmdStatus:list",p)}let S=new Map;if(Array.isArray(m))for(let p of m)p&&p.name&&S.set(p.name,p);for(let p of Object.keys(o)){let y=S.get(p);y&&y.status==="cancelled"&&h.push(`Cancelled work unit still indexed: ${p}`)}let g=i.filter(p=>p.phase==="specification"),x=new Set(g.map(p=>`${p.work_unit}.specification.${p.topic}`));for(let p of x){let[y,,w]=p.split("."),I=S.get(y);if(!I||!I.phases||!I.phases.specification||!I.phases.specification.items)continue;let T=I.phases.specification.items[w];T&&T.status==="superseded"&&h.push(`Superseded spec still indexed: ${p}`)}if(h.length>0){r.push(""),r.push("Consistency warnings:");for(let p of h)r.push(` ${p}`)}process.stdout.write(r.join(` +`);return}let s=await k.loadStore(e),i=await k.searchAllFulltext(s);r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let m of i)o[m.work_unit]=(o[m.work_unit]||0)+1,c[m.phase]=(c[m.phase]||0)+1,a[m.work_type]=(a[m.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[m,w]of Object.entries(o))r.push(` ${m}: ${w}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[m,w]of Object.entries(c))r.push(` ${m}: ${w}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[m,w]of Object.entries(a))r.push(` ${m}: ${w}`)}r.push("");let u=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),E.existsSync(n)){let m=k.readMetadata(n);if(r.push(`Last indexed: ${m.last_indexed||"unknown"}`),m.provider?(r.push(`Provider: ${m.provider} (model: ${m.model}, dimensions: ${m.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(m.pending)&&m.pending.length>0){r.push(""),r.push(`Pending items: ${m.pending.length}`);for(let S of m.pending){let T=S.attempts||1;r.push(` ${S.file} \u2014 ${S.error} (attempt ${T}/${hr}, ${S.failed_at})`)}}if(Array.isArray(m.pending_removals)&&m.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${m.pending_removals.length}`);for(let S of m.pending_removals)r.push(` ${ge(S)} \u2014 ${S.error} (attempt ${S.attempts||1}/${pr})`)}let w;try{w=me.loadConfig()}catch{w=null}if(w){let S=me.resolveProvider(w);m.provider&&S&&(m.provider!==w.provider||m.model!==S.model()||m.dimensions!==S.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(m.provider===null||m.provider===void 0)&&S&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=F.resolve(Y(),"..",".."),f=[],h=new Set;for(let m of i)h.has(m.source_file)||(h.add(m.source_file),E.existsSync(F.resolve(d,m.source_file))||f.push(m.source_file));if(f.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${f.length} files`);for(let m of f)r.push(` ${m}`)}try{let m=Sr(),w=[];for(let S of m)await To(s,S.workUnit,S.phase,S.topic)||w.push(S.file);if(w.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${w.length}`);for(let S of w)r.push(` ${S}`)}}catch(m){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${m.message} +`)}let p=[],x=null;try{x=JSON.parse(Me(["list"]))}catch(m){nt("cmdStatus:list",m)}let g=new Map;if(Array.isArray(x))for(let m of x)m&&m.name&&g.set(m.name,m);for(let m of Object.keys(o)){let w=g.get(m);w&&w.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${m}`)}let y=i.filter(m=>m.phase==="specification"),I=new Set(y.map(m=>`${m.work_unit}.specification.${m.topic}`));for(let m of I){let[w,,S]=m.split("."),T=g.get(w);if(!T||!T.phases||!T.phases.specification||!T.phases.specification.items)continue;let _=T.phases.specification.items[S];_&&_.status==="superseded"&&p.push(`Superseded spec still indexed: ${m}`)}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let m of p)r.push(` ${m}`)}process.stdout.write(r.join(` `)+` `)}async function Nl(t,e,n,r){let s=Q(),i=q(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. @@ -216,15 +216,15 @@ Rename them back manually to recover. Rollback error: ${f.message} `)}catch(s){await Mo(e,s.message),process.stderr.write(`Removal of ${r} failed (${s.message}). Queued for automatic retry on next remove/compact. `),process.exit(1)}}function Pl(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Rl(t){try{let e=Me(["get",t,"status"]).trim(),n=null;try{n=Me(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){nt(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return nt(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Ll(t,e,n){await No();let r=Q(),s=se(),i=n&&n.decay_months!==void 0?n.decay_months:me.DEFAULTS.decay_months;if(i===!1||i===null){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchAllFulltext(c);if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,x]of Object.entries(d)){let p=Rl(g);if(!p||p.status!=="completed"||!p.completed_at)continue;let y=bl(p.completed_at);if(!y||isNaN(y.getTime()))continue;let w=new Date(y);if(w.setMonth(w.getMonth()+o),w>a)continue;let I=x.filter(D=>D.phase!=="specification");if(I.length===0)continue;let T=new Set(I.map(D=>D.phase));f.push({workUnit:g,count:I.length,phases:T});for(let D of I)h.push({work_unit:D.work_unit,phase:D.phase,topic:D.topic})}if(f.length===0)return;let m=f.reduce((g,x)=>g+x.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let x of f)g.push(` \u2022 ${x.workUnit}: ${x.count} chunks (${Array.from(x.phases).join(", ")})`);process.stdout.write(g.join(` +`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchAllFulltext(c);if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,y]of Object.entries(d)){let I=Rl(g);if(!I||I.status!=="completed"||!I.completed_at)continue;let m=bl(I.completed_at);if(!m||isNaN(m.getTime()))continue;let w=new Date(m);if(w.setMonth(w.getMonth()+o),w>a)continue;let S=y.filter(_=>_.phase!=="specification");if(S.length===0)continue;let T=new Set(S.map(_=>_.phase));f.push({workUnit:g,count:S.length,phases:T});for(let _ of S)h.push({work_unit:_.work_unit,phase:_.phase,topic:_.topic})}if(f.length===0)return;let p=f.reduce((g,y)=>g+y.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${p} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let y of f)g.push(` \u2022 ${y.workUnit}: ${y.count} chunks (${Array.from(y.phases).join(", ")})`);process.stdout.write(g.join(` `)+` -`);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),x=new Set;for(let p of h){let y=`${p.work_unit}|${p.phase}|${p.topic}`;x.has(y)||(x.add(y),await k.removeByIdentity(g,p))}await k.saveStore(g,r)});let S=[];S.push(`Compacted: removed ${m} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)S.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(S.join(` +`);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),y=new Set;for(let I of h){let m=`${I.work_unit}|${I.phase}|${I.topic}`;y.has(m)||(y.add(m),await k.removeByIdentity(g,I))}await k.saveStore(g,r)});let x=[];x.push(`Compacted: removed ${p} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)x.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(x.join(` `)+` `)}async function Oo(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(dr+` `),process.exit(0));let{positional:e,flags:n,boosts:r}=vo(t),s=e[0],i=e.slice(1),o=ko(n,r);s||(process.stderr.write(dr+` `),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await Sl(i,o,c,a);break;case"query":await _l(i,o,c,a);break;case"check":await Dl(i,o,c,a);break;case"status":await Ml();break;case"remove":await Ol(i,o,c,a);break;case"compact":await Ll(i,o,c,a);break;case"rebuild":await Nl(i,o,c,a);break;case"setup":await Eo.cmdSetup(Ht,i,o);break;default:process.stderr.write(`Unknown command "${s}". ${dr} -`),process.exit(1)}}module.exports={parseArgs:vo,buildOptions:ko,deriveIdentity:yr,resolveProviderState:wr,withRetry:st,UserError:U,AuthError:Ao,main:Oo,cmdIndexBulk:Ht,StubProvider:pl,OpenAIProvider:ml,store:k,chunker:bo,config:me,setup:Eo,knowledgeDir:Z,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:mr,KEYWORD_ONLY_DIMENSIONS:gr};require.main===module&&Oo().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +`),process.exit(1)}}module.exports={parseArgs:vo,buildOptions:ko,deriveIdentity:yr,resolveProviderState:wr,withRetry:st,UserError:U,AuthError:Ao,main:Oo,cmdIndexBulk:Ht,StubProvider:pl,OpenAIProvider:ml,store:k,chunker:bo,config:me,setup:Eo,knowledgeDir:Y,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:mr,KEYWORD_ONLY_DIMENSIONS:gr};require.main===module&&Oo().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 9ad25c34b..5cddc6bdc 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1480,12 +1480,16 @@ async function cmdStatus() { } // 7. Orphan detection — source files that no longer exist. + // Resolve relative to the project root (where .workflows/.knowledge + // lives) rather than process.cwd(), so status invoked from a + // subdirectory does not mark every chunk as orphaned. + const projectRoot = path.resolve(knowledgeDir(), '..', '..'); const orphans = []; const seenSources = new Set(); for (const c of allChunks) { if (seenSources.has(c.source_file)) continue; seenSources.add(c.source_file); - if (!fs.existsSync(path.resolve(c.source_file))) { + if (!fs.existsSync(path.resolve(projectRoot, c.source_file))) { orphans.push(c.source_file); } } From 750d468a6279d9e70602b5bc4d9a9a3ab49f02ad Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:19:56 +0100 Subject: [PATCH 68/78] test(migrations): unify -u flag across migration test harnesses (#18) Migration tests 001-028 used `set -eo pipefail`; tests 029-037 used the stricter `set -euo pipefail`. Apply `-u` uniformly so all 37 test harnesses fail loudly on unset variables (rather than letting typos silently degrade to empty strings). Verified all 37 migration tests still pass. Reference: post-audit-followups.md #18. Co-Authored-By: Claude Opus 4.7 (1M context) --- tests/scripts/test-migration-001.sh | 2 +- tests/scripts/test-migration-002.sh | 2 +- tests/scripts/test-migration-003.sh | 2 +- tests/scripts/test-migration-004.sh | 2 +- tests/scripts/test-migration-005.sh | 2 +- tests/scripts/test-migration-006.sh | 2 +- tests/scripts/test-migration-007.sh | 2 +- tests/scripts/test-migration-008.sh | 2 +- tests/scripts/test-migration-009.sh | 2 +- tests/scripts/test-migration-010.sh | 2 +- tests/scripts/test-migration-011.sh | 2 +- tests/scripts/test-migration-012.sh | 2 +- tests/scripts/test-migration-013.sh | 2 +- tests/scripts/test-migration-014.sh | 2 +- tests/scripts/test-migration-015.sh | 2 +- tests/scripts/test-migration-016.sh | 2 +- tests/scripts/test-migration-017.sh | 2 +- tests/scripts/test-migration-018.sh | 2 +- tests/scripts/test-migration-019.sh | 2 +- tests/scripts/test-migration-020.sh | 2 +- tests/scripts/test-migration-021.sh | 2 +- tests/scripts/test-migration-022.sh | 2 +- tests/scripts/test-migration-023.sh | 2 +- tests/scripts/test-migration-024.sh | 2 +- tests/scripts/test-migration-025.sh | 2 +- tests/scripts/test-migration-026.sh | 2 +- tests/scripts/test-migration-027.sh | 2 +- tests/scripts/test-migration-028.sh | 2 +- 28 files changed, 28 insertions(+), 28 deletions(-) diff --git a/tests/scripts/test-migration-001.sh b/tests/scripts/test-migration-001.sh index 56ce2101d..e5287fd88 100755 --- a/tests/scripts/test-migration-001.sh +++ b/tests/scripts/test-migration-001.sh @@ -2,7 +2,7 @@ # Tests for migration 001: discussion-frontmatter # Run: bash tests/scripts/test-migration-001.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-002.sh b/tests/scripts/test-migration-002.sh index e2055c14b..6a646b6c0 100755 --- a/tests/scripts/test-migration-002.sh +++ b/tests/scripts/test-migration-002.sh @@ -2,7 +2,7 @@ # Tests for migration 002: specification-frontmatter # Run: bash tests/scripts/test-migration-002.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-003.sh b/tests/scripts/test-migration-003.sh index afc8beb05..7887598e6 100755 --- a/tests/scripts/test-migration-003.sh +++ b/tests/scripts/test-migration-003.sh @@ -2,7 +2,7 @@ # Tests for migration 003: planning-frontmatter # Run: bash tests/scripts/test-migration-003.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-004.sh b/tests/scripts/test-migration-004.sh index 230d3a18f..142a3d50d 100755 --- a/tests/scripts/test-migration-004.sh +++ b/tests/scripts/test-migration-004.sh @@ -2,7 +2,7 @@ # Tests for migration 004: sources-object-format # Run: bash tests/scripts/test-migration-004.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-005.sh b/tests/scripts/test-migration-005.sh index 34e8015b8..6bed19c1f 100755 --- a/tests/scripts/test-migration-005.sh +++ b/tests/scripts/test-migration-005.sh @@ -2,7 +2,7 @@ # Tests for migration 005: plan-external-deps-frontmatter # Run: bash tests/scripts/test-migration-005.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-006.sh b/tests/scripts/test-migration-006.sh index 3371b0cc3..cf41a5f4a 100755 --- a/tests/scripts/test-migration-006.sh +++ b/tests/scripts/test-migration-006.sh @@ -2,7 +2,7 @@ # Tests for migration 006: directory-restructure # Run: bash tests/scripts/test-migration-006.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-007.sh b/tests/scripts/test-migration-007.sh index 5fd827271..8c1fa6da0 100755 --- a/tests/scripts/test-migration-007.sh +++ b/tests/scripts/test-migration-007.sh @@ -2,7 +2,7 @@ # Tests for migration 007: tasks-subdirectory # Run: bash tests/scripts/test-migration-007.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-008.sh b/tests/scripts/test-migration-008.sh index a860acd5e..72afb417e 100755 --- a/tests/scripts/test-migration-008.sh +++ b/tests/scripts/test-migration-008.sh @@ -2,7 +2,7 @@ # Tests for migration 008: review-directory-structure # Run: bash tests/scripts/test-migration-008.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-009.sh b/tests/scripts/test-migration-009.sh index cfde7398e..1f9183370 100755 --- a/tests/scripts/test-migration-009.sh +++ b/tests/scripts/test-migration-009.sh @@ -2,7 +2,7 @@ # Tests for migration 009: review-per-plan-storage # Run: bash tests/scripts/test-migration-009.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-010.sh b/tests/scripts/test-migration-010.sh index 0e13e982c..b1d3d02ea 100755 --- a/tests/scripts/test-migration-010.sh +++ b/tests/scripts/test-migration-010.sh @@ -2,7 +2,7 @@ # Tests for migration 010: gitignore-sessions # Run: bash tests/scripts/test-migration-010.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-011.sh b/tests/scripts/test-migration-011.sh index 1ba4f987c..6786e4218 100755 --- a/tests/scripts/test-migration-011.sh +++ b/tests/scripts/test-migration-011.sh @@ -2,7 +2,7 @@ # Tests for migration 011: rename-workflow-directory # Run: bash tests/scripts/test-migration-011.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-012.sh b/tests/scripts/test-migration-012.sh index bc296b769..dc9d690e5 100755 --- a/tests/scripts/test-migration-012.sh +++ b/tests/scripts/test-migration-012.sh @@ -2,7 +2,7 @@ # Tests for migration 012: environment-setup-to-state # Run: bash tests/scripts/test-migration-012.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-013.sh b/tests/scripts/test-migration-013.sh index 4a4979c0d..1ed06b90f 100644 --- a/tests/scripts/test-migration-013.sh +++ b/tests/scripts/test-migration-013.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-013.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-014.sh b/tests/scripts/test-migration-014.sh index d677543b0..6dfa46da7 100644 --- a/tests/scripts/test-migration-014.sh +++ b/tests/scripts/test-migration-014.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-014.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-015.sh b/tests/scripts/test-migration-015.sh index 00085e38e..3fedd131e 100644 --- a/tests/scripts/test-migration-015.sh +++ b/tests/scripts/test-migration-015.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-015.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-016.sh b/tests/scripts/test-migration-016.sh index 9807a9d1b..a6c867a97 100755 --- a/tests/scripts/test-migration-016.sh +++ b/tests/scripts/test-migration-016.sh @@ -2,7 +2,7 @@ # Tests for migration 016: work-unit-restructure # Run: bash tests/scripts/test-migration-016.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-017.sh b/tests/scripts/test-migration-017.sh index 9c879dc09..7f39ccf2e 100755 --- a/tests/scripts/test-migration-017.sh +++ b/tests/scripts/test-migration-017.sh @@ -2,7 +2,7 @@ # Tests for migration 017: external-deps-object # Run: bash tests/scripts/test-migration-017.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-018.sh b/tests/scripts/test-migration-018.sh index 53703969f..78eb712ae 100755 --- a/tests/scripts/test-migration-018.sh +++ b/tests/scripts/test-migration-018.sh @@ -2,7 +2,7 @@ # Tests for migration 018: remove-stale-environment-setup # Run: bash tests/scripts/test-migration-018.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-019.sh b/tests/scripts/test-migration-019.sh index 3ae13186c..df35cff70 100755 --- a/tests/scripts/test-migration-019.sh +++ b/tests/scripts/test-migration-019.sh @@ -2,7 +2,7 @@ # Tests for migration 019: status-rename # Run: bash tests/scripts/test-migration-019.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-020.sh b/tests/scripts/test-migration-020.sh index 87d6bf32d..aa4972ad3 100755 --- a/tests/scripts/test-migration-020.sh +++ b/tests/scripts/test-migration-020.sh @@ -2,7 +2,7 @@ # Tests for migration 020: normalise-terminal-status # Run: bash tests/scripts/test-migration-020.sh -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-021.sh b/tests/scripts/test-migration-021.sh index 628a55fe5..9696421f6 100644 --- a/tests/scripts/test-migration-021.sh +++ b/tests/scripts/test-migration-021.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-021.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-022.sh b/tests/scripts/test-migration-022.sh index 564a0241d..3085f2edd 100644 --- a/tests/scripts/test-migration-022.sh +++ b/tests/scripts/test-migration-022.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-022.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-023.sh b/tests/scripts/test-migration-023.sh index 533bb333d..7ab6ca30b 100755 --- a/tests/scripts/test-migration-023.sh +++ b/tests/scripts/test-migration-023.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-023.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-024.sh b/tests/scripts/test-migration-024.sh index a67f423b1..f6b401294 100755 --- a/tests/scripts/test-migration-024.sh +++ b/tests/scripts/test-migration-024.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-024.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-025.sh b/tests/scripts/test-migration-025.sh index 59b206c0c..166cd8feb 100644 --- a/tests/scripts/test-migration-025.sh +++ b/tests/scripts/test-migration-025.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-025.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-026.sh b/tests/scripts/test-migration-026.sh index c7e63cc1a..ae6c97a4d 100755 --- a/tests/scripts/test-migration-026.sh +++ b/tests/scripts/test-migration-026.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-026.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-027.sh b/tests/scripts/test-migration-027.sh index d506a478b..b504552bc 100755 --- a/tests/scripts/test-migration-027.sh +++ b/tests/scripts/test-migration-027.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-027.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" diff --git a/tests/scripts/test-migration-028.sh b/tests/scripts/test-migration-028.sh index 62f612a5f..f861bdb06 100644 --- a/tests/scripts/test-migration-028.sh +++ b/tests/scripts/test-migration-028.sh @@ -5,7 +5,7 @@ # Run: bash tests/scripts/test-migration-028.sh # -set -eo pipefail +set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" REPO_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)" From 8e8e687e85860c068c36840a81f0dc8eb2b7fccf Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:20:17 +0100 Subject: [PATCH 69/78] docs(knowledge): update design.md bundle estimate to current reality (#19) Estimate was ~110-120 KB minified; the actual shipped bundle is ~155 KB (still well under the 200 KB ceiling). Note that ESM-resolution wrapping and Orama version drift account for the difference, and clarify that the budget is the ceiling, not the estimate. Reference: post-audit-followups.md #19. Co-Authored-By: Claude Opus 4.7 (1M context) --- knowledge-base/design.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/knowledge-base/design.md b/knowledge-base/design.md index a4fc770ee..07dbc18ca 100644 --- a/knowledge-base/design.md +++ b/knowledge-base/design.md @@ -205,7 +205,7 @@ search(db, { | MsgPack only | ~30 MB | ~240 MB | 1,010 ms | 1,085 ms | | MsgPack + gzip | ~19 MB | ~154 MB | 10,829 ms | 2,079 ms | -**MsgPack without gzip is the clear winner**: 3x faster serialize, 2x faster deserialize than JSON. Comparable size to JSON+gzip while being 19x faster to serialize. Both `@orama/orama` and `@msgpack/msgpack` are zero-dependency pure JS — the two libraries bundle to **90KB minified** (verified). With application code, the total `knowledge.cjs` is estimated at ~110-120KB minified. +**MsgPack without gzip is the clear winner**: 3x faster serialize, 2x faster deserialize than JSON. Comparable size to JSON+gzip while being 19x faster to serialize. Both `@orama/orama` and `@msgpack/msgpack` are zero-dependency pure JS — the two libraries bundle to **90KB minified** (verified). The shipped `knowledge.cjs` bundle is ~155 KB — well under the 200 KB ceiling. The original ~110-120 KB estimate did not account for the ESM-resolution wrapper esbuild adds to handle Orama's CJS/ESM dual export and for Orama's own minor version drift; the budget is the ceiling, not the estimate. **Performance at realistic scale** (with memory decay/compaction — see below): - Active working set: 500-2,000 chunks (specs forever + recent research/discussion) From 31c7b6884f6ab5846ca2902f98fe937f0e4e6b1a Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:20:54 +0100 Subject: [PATCH 70/78] docs(knowledge): document phase task list checkbox convention (#14) The 76 unchecked boxes across phase-1-tasks.md..phase-8-tasks.md are author-time planning artefacts that capture planned scope, not progress trackers. Completion is recorded in git (merged phase PRs) rather than by flipping checkboxes after the fact. Document the convention once at the top of planning.md so the next reader does not interpret an all-unchecked file as "nothing done". Reference: post-audit-followups.md #14. Co-Authored-By: Claude Opus 4.7 (1M context) --- knowledge-base/planning.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/knowledge-base/planning.md b/knowledge-base/planning.md index f49dfcdd9..ad241a9bb 100644 --- a/knowledge-base/planning.md +++ b/knowledge-base/planning.md @@ -2,6 +2,8 @@ Specification: [design.md](design.md) +> Convention: the `[ ]` checkboxes throughout this plan and the per-phase task files (`phase-{N}-tasks.md`) are author-time planning artefacts that capture the **planned scope** of each phase. They are not progress trackers and intentionally remain unchecked even after implementation lands — completion is recorded in git history (merged phase PRs) rather than by mutating these files. + ## Phases ### Phase 1: Build Pipeline + Store Fundamentals From ba515a7571ad8e718526f0a0ee488850e7baf881 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:22:11 +0100 Subject: [PATCH 71/78] fix(knowledge): surface knowledge compact as escape hatch for orphan WU remove (#12) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit After absorption, a work unit's registry entry is deleted but the stored chunks can linger until the pending-removal queue drains. A user manually invoking `knowledge remove --work-unit ` hit a UserError pointing them at `knowledge status`, which does not help — `knowledge compact` is the actual escape hatch (it drains the pending-removal queue via processPendingRemovals). Update the error to distinguish the two failure modes (typo vs absorbed-but-chunks-linger) and route the second case toward `knowledge compact`. Reference: post-audit-followups.md #12. Co-Authored-By: Claude Opus 4.7 (1M context) --- skills/workflow-knowledge/scripts/knowledge.cjs | 4 +++- src/knowledge/index.js | 5 +++-- 2 files changed, 6 insertions(+), 3 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 609fd2589..5107ae1f5 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -209,7 +209,9 @@ Aborted. Rename them back manually to recover. Rollback error: ${f.message} `)}throw d}E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u)}function Ul(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Ol(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. Check the name, or run \`knowledge status\` to see what is indexed.`):s}let n=Q(),r=Pl(e);if(e.dryRun){if(!E.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) +`),process.exit(1));try{Me(["project","get",e.workUnit])}catch(s){throw s&&s.status===2?new U(`Work unit "${e.workUnit}" not found in project manifest. + - If the name is a typo: run \`knowledge status\` to see what is indexed. + - If the work unit was absorbed/deleted but its chunks linger: run \`knowledge compact\` to drain orphaned chunks via the pending-removal queue.`):s}let n=Q(),r=Pl(e);if(e.dryRun){if(!E.existsSync(n)){process.stdout.write(`Would remove 0 chunks for ${r} (store not initialised) `);return}let s=await k.loadStore(n),i={work_unit:{eq:e.workUnit}};e.phase&&(i.phase={eq:e.phase}),e.topic&&(i.topic={eq:e.topic});let o=await k.countByFilter(s,i);process.stdout.write(`Would remove ${o} chunks for ${r} `);return}if(await No(),!E.existsSync(n)){process.stdout.write(`Removed 0 chunks for ${r} `);return}try{let s=await Uo(e);process.stdout.write(`Removed ${s} chunks for ${r} diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 5cddc6bdc..1d3ab405d 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1749,8 +1749,9 @@ async function cmdRemove(_args, options) { } catch (err) { if (err && err.status === 2) { throw new UserError( - `Work unit "${options.workUnit}" not found in project manifest. ` + - 'Check the name, or run `knowledge status` to see what is indexed.' + `Work unit "${options.workUnit}" not found in project manifest.\n` + + ' - If the name is a typo: run `knowledge status` to see what is indexed.\n' + + ' - If the work unit was absorbed/deleted but its chunks linger: run `knowledge compact` to drain orphaned chunks via the pending-removal queue.' ); } // Any other manifest error is unexpected — rethrow so the stack shows. From a8924796fc37118a320b3eac364164b725049309 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:25:15 +0100 Subject: [PATCH 72/78] test(knowledge): add real-failure coverage for pending-removal queue (#10) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Test 81 Part B (now renamed "queue drains on no-op success") only exercised processPendingRemovals' happy path: stale-wu has no chunks, performRemoval returns 0, the entry is dropped. The eviction branch (attempts >= REMOVAL_MAX_ATTEMPTS) and the attempts-increment branch (performRemoval throws → addPendingRemoval bumps the counter) had no test coverage. Add Test 81b — seeds a pending_removals entry already at attempts:10 and asserts processPendingRemovals evicts it and surfaces the "exceeded 10 attempts — evicting" stderr notice. Add Test 81c — seeds attempts:5, corrupts store.msp so loadStore throws, runs `knowledge compact` (which calls processPendingRemovals), and asserts the entry's attempts went from 5 to 6. Reference: post-audit-followups.md #10. Co-Authored-By: Claude Opus 4.7 (1M context) --- tests/scripts/test-knowledge-cli.sh | 68 +++++++++++++++++++++++++++-- 1 file changed, 65 insertions(+), 3 deletions(-) diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 5155dc23a..a70dda026 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -1665,14 +1665,76 @@ const m=JSON.parse(require('fs').readFileSync('$meta','utf8')); process.stdout.write(String((m.pending_removals||[]).length)); ") assert_eq "pending_removals survives an index write" "1" "$queue_after_index" -# Part B — a normal remove call drains the queue (stale-wu has no chunks; -# performRemoval returns 0 chunks, processPendingRemovals then removes the entry). +# Part B — a normal remove call drains the queue on the no-op success path +# (stale-wu has no chunks; performRemoval returns 0 chunks, processPendingRemovals +# then removes the entry). Pairs with Parts C and D below which exercise the +# real-failure paths. run_kb remove --work-unit drop-me >/dev/null 2>&1 queue_after_remove=$(node -e " const m=JSON.parse(require('fs').readFileSync('$meta','utf8')); process.stdout.write(String((m.pending_removals||[]).length)); ") -assert_eq "pending queue drained after remove" "0" "$queue_after_remove" +assert_eq "queue drains on no-op success" "0" "$queue_after_remove" +teardown_project + +# --- Test 81b: pending-removal queue evicts after REMOVAL_MAX_ATTEMPTS --- +# Guards processPendingRemovals' eviction branch — without a real-failure +# test, all observed behaviour was on the no-op success path above. +echo "Test 81b: Pending removal eviction" +setup_project +create_work_unit "drop-me" "feature" "Drop" +write_stub_config +create_discussion_file "drop-me" "drop-me" +run_kb index .workflows/drop-me/discussion/drop-me.md >/dev/null 2>&1 +meta="$TEST_ROOT/.workflows/.knowledge/metadata.json" +# Seed a pending removal already at the eviction threshold. +node -e " +const fs=require('fs'); +const m=JSON.parse(fs.readFileSync('$meta','utf8')); +m.pending_removals=[{workUnit:'capped-wu',phase:null,topic:null,queued_at:new Date().toISOString(),error:'simulated permanent failure',attempts:10}]; +fs.writeFileSync('$meta', JSON.stringify(m)); +" +# Triggering processPendingRemovals (any command that calls it works). +evict_stderr=$(run_kb remove --work-unit drop-me 2>&1 >/dev/null) +queue_after_evict=$(node -e " +const m=JSON.parse(require('fs').readFileSync('$meta','utf8')); +process.stdout.write(String((m.pending_removals||[]).length)); +") +assert_eq "queue empty after eviction at MAX_ATTEMPTS" "0" "$queue_after_evict" +assert_eq "eviction surfaces stderr notice" "true" "$(echo "$evict_stderr" | grep -q 'exceeded 10 attempts.*evicting' && echo true || echo false)" +teardown_project + +# --- Test 81c: pending-removal failure increments attempts --- +# Guards the addPendingRemoval bump in processPendingRemovals' catch branch. +# Simulates a real failure by corrupting store.msp before the drain runs. +echo "Test 81c: Pending removal attempts increment on failure" +setup_project +create_work_unit "drop-me" "feature" "Drop" +write_stub_config +create_discussion_file "drop-me" "drop-me" +run_kb index .workflows/drop-me/discussion/drop-me.md >/dev/null 2>&1 +meta="$TEST_ROOT/.workflows/.knowledge/metadata.json" +store_msp="$TEST_ROOT/.workflows/.knowledge/store.msp" +# Seed a pending removal mid-attempts and corrupt the store so loadStore throws. +node -e " +const fs=require('fs'); +const m=JSON.parse(fs.readFileSync('$meta','utf8')); +m.pending_removals=[{workUnit:'flaky-wu',phase:null,topic:null,queued_at:new Date().toISOString(),error:'prior failure',attempts:5}]; +fs.writeFileSync('$meta', JSON.stringify(m)); +" +# Backup and corrupt the store. +cp "$store_msp" "$store_msp.bak" +printf 'corrupt-msgpack-bytes' > "$store_msp" +# Trigger processPendingRemovals — this will fail and bump attempts. +run_kb compact >/dev/null 2>&1 || true +attempts_after=$(node -e " +const m=JSON.parse(require('fs').readFileSync('$meta','utf8')); +const r=(m.pending_removals||[]).find(r=>r.workUnit==='flaky-wu'); +process.stdout.write(String(r ? r.attempts : 'evicted')); +") +# Restore the store (so teardown_project can run cleanly if needed). +mv "$store_msp.bak" "$store_msp" +assert_eq "attempts incremented from 5 to 6 after real failure" "6" "$attempts_after" teardown_project # --- Test 82: Rebuild cleans up .bak files on success and on leftover --- From ab4c60df154cff84956ffdba0f01c9efd55ebc7b Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:25:48 +0100 Subject: [PATCH 73/78] docs(readme): document knowledge base + first-run setup (#11) The user-facing README had no mention of the knowledge base, despite it being required infrastructure (workflow start hard-stops on missing .workflows/.knowledge/). A user installing via `npx agntc add ...` would hit the gate with no warning in Getting Started. Add a Knowledge Base section under Getting Started covering: - What the KB is and why workflow phases query it - The first-run `knowledge setup` command - Embedding provider choice (openai vs stub mode) - API key resolution (env var, credentials file, validated test embed) - Stub-mode keyword-only fallback Also note the optional OPENAI_API_KEY in Requirements with a link. Reference: post-audit-followups.md #11. Co-Authored-By: Claude Opus 4.7 (1M context) --- README.md | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/README.md b/README.md index a9d3af9f4..0108620b9 100644 --- a/README.md +++ b/README.md @@ -57,6 +57,24 @@ npx agntc remove leeovery/agentic-workflows ### Requirements - Node.js 18+ +- (Optional) OpenAI API key — enables semantic search across your workflow history. See [Knowledge Base](#knowledge-base) below; stub mode is available if you'd rather skip embeddings. + +### Knowledge Base + +Workflows record what's been researched, decided, and built into a per-project knowledge base. Subsequent phases query this base to surface prior context — e.g. discussion checks if a similar topic was already decided, planning checks how comparable specs were structured, review checks for cross-work-unit consistency. + +**First run** — before any workflow command can execute, the system checks that the knowledge base is initialised. New installs and existing projects upgrading to this version will be prompted to run setup once: + +```bash +node .claude/skills/workflow-knowledge/scripts/knowledge.cjs setup +``` + +The wizard is interactive and walks through: +- **Embedding provider**: choose `openai` (semantic + keyword search) or `skip` (keyword-only). +- **OpenAI API key** (only if you chose openai): provided via `$OPENAI_API_KEY` in your shell, or stored at `~/.config/workflows/credentials.json` (mode 0600). The wizard validates the key with a test embed before committing config. +- **Project init**: creates `.workflows/.knowledge/` with the store, metadata, and config. + +**Stub mode** — if you don't want to use an embedding API, choose `skip` at the provider prompt. Search falls back to BM25 keyword matching only. You can switch to OpenAI later by re-running `knowledge setup`. ### Your First Workflow From 0bd6c6cba3d589e2e2b0d9b44a0e708871559a96 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:26:11 +0100 Subject: [PATCH 74/78] docs(knowledge): mark all remaining post-audit followups as landed #10, #11, #12, #14, #15, #16, #17, #18, #19 all addressed. Co-Authored-By: Claude Opus 4.7 (1M context) --- knowledge-base/post-audit-followups.md | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/knowledge-base/post-audit-followups.md b/knowledge-base/post-audit-followups.md index 76af20f70..02128ab89 100644 --- a/knowledge-base/post-audit-followups.md +++ b/knowledge-base/post-audit-followups.md @@ -275,7 +275,7 @@ No store/integration test pins down this contract. An Orama version bump that ch --- -### #10 — Test 81 Part B (pending-removal queue drain) has theatre risk on the negative path +### #10 — Test 81 Part B (pending-removal queue drain) has theatre risk on the negative path (✅ commit `a8924796`) **File:** `tests/scripts/test-knowledge-cli.sh:1638-1676` (Test 81) @@ -287,7 +287,7 @@ No store/integration test pins down this contract. An Orama version bump that ch --- -### #11 — README has zero mention of the knowledge base +### #11 — README has zero mention of the knowledge base (✅ commit `ab4c60df`) **File:** `README.md` (238 lines) @@ -307,7 +307,7 @@ Per `knowledge-base/design.md:316-333`, the KB is **required infrastructure**. A --- -### #12 — Manual `knowledge remove --work-unit ` errors with no escape hint +### #12 — Manual `knowledge remove --work-unit ` errors with no escape hint (✅ commit `ba515a75`) **File:** `src/knowledge/index.js:1740-1751` @@ -327,27 +327,27 @@ Or: when registry says "not found" but chunks exist for that WU in the store, ro Says "loaded at phase start in research, discussion, and investigation processing skills" — but is also loaded by scoping (per Minor #9 of the cleanup). Update header to include scoping. -### #14 — Phase task lists all-unchecked +### #14 — Phase task lists all-unchecked (✅ commit `31c7b688`) `knowledge-base/phase-1-tasks.md` through `phase-8-tasks.md` (76 total checkboxes, 0 checked) despite branch being phase-8 with all features implemented. Either update post-implementation or document the convention as "checkboxes are author-time artefacts, not progress trackers". -### #15 — Setup integer parser is lenient +### #15 — Setup integer parser is lenient (✅ commit `c556adfe`) `src/knowledge/setup.js:366-370` — `parseInt('1536abc', 10)` returns `1536`; `Number.isInteger` then passes. Setup happily stores partly-valid input as the dimensions field. Add `/^\d+$/` regex check before `parseInt`. -### #16 — `cmdCompact` rejects `decay_months: null` +### #16 — `cmdCompact` rejects `decay_months: null` (✅ commit `842db966`) `src/knowledge/index.js:1842-1852`. Only `false` or non-negative integer accepted. A user hand-editing config and writing `null` intuitively (to disable) gets an error. Treat `null` as equivalent to `false`. -### #17 — `cmdStatus` orphan check is cwd-sensitive +### #17 — `cmdStatus` orphan check is cwd-sensitive (✅ commit `246b24e1`) `src/knowledge/index.js:1485`. `fs.existsSync(path.resolve(c.source_file))` against the relative path stored at index time. Status from a different cwd reports every chunk as orphaned. Resolve relative to the project root, not `process.cwd()`. -### #18 — Test convention drift +### #18 — Test convention drift (✅ commit `750d468a`) Migration tests 001-028 use `set -eo pipefail`; 029-037 use `set -euo pipefail`. Pick one (likely the stricter `-u`) and apply uniformly. Or add a comment explaining the intent. -### #19 — Bundle ~30% over design estimate +### #19 — Bundle ~30% over design estimate (✅ commit `8e8e687e`) `knowledge-base/design.md:208` estimates ~110-120 KB minified. Current bundle is ~156 KB (well under the 200 KB ceiling). Update the design estimate to reflect current reality, or note that ESM-resolution + Orama version drift accounts for the increase. From bb2e8567e8123538df3e6c90eeb32996221b70fc Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:37:55 +0100 Subject: [PATCH 75/78] fix(knowledge): also suppress stack dump for AuthError in cmdIndexBulk MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit #3 added the UserError stack-skip in cmdIndexBulk's catch. #5 then introduced AuthError as a sibling user-facing error class and added it to withRetry's permanent-failure skip list. Both are user-config failures (validation / bad API key) where the message line alone is the actionable signal — apply the same stack suppression to both. Co-Authored-By: Claude Opus 4.7 (1M context) --- .../workflow-knowledge/scripts/knowledge.cjs | 88 +++++++++---------- src/knowledge/index.js | 8 +- 2 files changed, 49 insertions(+), 47 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 5107ae1f5..f89faa4f8 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var Zt=Object.defineProperty;var Po=Object.getOwnPropertyDescriptor;var Ro=Object.getOwnPropertyNames;var Lo=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var we=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),te=(t,e)=>{for(var n in e)Zt(t,n,{get:e[n],enumerable:!0})},Co=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of Ro(e))!Lo.call(t,s)&&s!==n&&Zt(t,s,{get:()=>e[s],enumerable:!(r=Po(e,s))||r.enumerable});return t};var 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wi(t,e){return new _e(e).encodeSharedRef(t)}var xi=v(()=>{Hn()});function Bt(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var Si=v(()=>{});var Ia,ba,Ft,Ii=v(()=>{Ot();Ia=16,ba=16,Ft=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=Ia,n=ba){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=Bn(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Jn,Qe,Ai,Aa,Xn,Ze,Zn,Ea,bi,va,G,zt=v(()=>{Si();$t();Ct();Ot();Yn();Ii();Pt();Jn="array",Qe="map_key",Ai="map_value",Aa=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new $("The type of key must be string or number but "+typeof t)},Xn=class{stack=[];stackHeadPosition=-1;get length(){return 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Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function ol(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=cr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=tt.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{C.closeSync(a)}C.chmodSync(c,384),C.renameSync(c,t);try{C.chmodSync(t,384)}catch{}}function no(t,e){if(!t)return null;let n=Zi[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||to(),s;try{s=cr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function cl(t){let e=t&&t.systemPath||Qi(),n=t&&t.projectPath||eo(),r=or(e),s=or(n),i=Object.assign({},Xi);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=no(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function al(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new sl(n!=null?{dimensions:n}:void 0)}if(!ir.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${ir.join(", ")}`);return t._api_key&&e==="openai"?new il({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function ll(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=tt.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),C.renameSync(r,t)}ro.exports={DEFAULTS:Xi,AVAILABLE_PROVIDERS:ir,PROVIDER_ENV_VARS:Zi,systemConfigPath:Qi,projectConfigPath:eo,credentialsPath:to,readConfigFile:or,loadConfig:cl,loadCredentials:cr,writeCredentials:ol,resolveApiKey:no,resolveProvider:al,writeConfigFile:ll}});var So=we((Th,xo)=>{"use strict";var le=require("fs"),ue=require("path"),ul=require("readline"),B=ar(),lr=tr(),{OpenAIProvider:dl}=jt(),so="text-embedding-3-small",io=1536,oo=1536;function co(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function ao(){let t=ul.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function qt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function ao(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` +`),t.close(),process.exit(130)}),t}function qt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function lo(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` `||u==="\r")return c(),s.write(` `),n(o.trim());if(u===""){c(),s.write(` `),process.exit(130);return}if(u==="")return c(),s.write(` -`),n(o.trim());if(u==="\x7F"||u==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}u<" "||(o+=u,s.write("*"))}};r.on("data",a)})}function lo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function ur(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function uo(){return{knowledge:{}}}function fo(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function ho(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function Kt({apiKey:t,model:e,dimensions:n}){let s=await new dl({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Gt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function po(t){let e=B.systemConfigPath(),n=fo(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(u==="\x7F"||u==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}u<" "||(o+=u,s.write("*"))}};r.on("data",a)})}function uo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function ur(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function fo(){return{knowledge:{}}}function ho(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function po(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function Kt({apiKey:t,model:e,dimensions:n}){let s=await new dl({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Gt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function mo(t){let e=B.systemConfigPath(),n=ho(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} @@ -53,13 +53,13 @@ Embedding provider: `);let s;for(;s=(await qt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". `);if(s==="skip")return B.writeConfigFile(e,ur()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await qt(t,"Embedding model",ro),o=await qt(t,"Vector dimensions",String(so));/^\d+$/.test(o.trim())||(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await qt(t,"Embedding model",so),o=await qt(t,"Vector dimensions",String(io));/^\d+$/.test(o.trim())||(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. `),process.exit(1));let c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1));let a=B.PROVIDER_ENV_VARS.openai;return await mo(t,{envVar:a,model:i,dimensions:c})==="opted-out"?(B.writeConfigFile(e,ur()),process.stdout.write(` +`),process.exit(1));let a=B.PROVIDER_ENV_VARS.openai;return await go(t,{envVar:a,model:i,dimensions:c})==="opted-out"?(B.writeConfigFile(e,ur()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Re-run `knowledge setup` once you have a working API key.\n"),{provider:null,previouslyStub:r}):(B.writeConfigFile(e,lo({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Re-run `knowledge setup` once you have a working API key.\n"),{provider:null,previouslyStub:r}):(B.writeConfigFile(e,uo({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`),{provider:"openai",previouslyStub:r})}async function mo(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`),{provider:"openai",previouslyStub:r})}async function go(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... `);try{return await Kt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. `),"validated"}catch(c){let{message:a,hint:l}=Gt(c);process.stderr.write(` @@ -90,7 +90,7 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await ao(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await lo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... @@ -100,7 +100,7 @@ Validating via a test embed... `),!await De(t,"Try a different key?",!0))return process.stdout.write(`No key stored. Falling back to stub mode \u2014 semantic search disabled. Set $${e} in your shell or re-run \`knowledge setup\` once you have a working key. `),"opted-out";continue}return B.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`),"validated"}}async function go(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=ho(e);if(i.fullyInitialised){if(process.stdout.write(` +`),"validated"}}async function yo(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=po(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await De(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -108,27 +108,27 @@ Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,uo()),process.stdout.write(` config.json written -`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:io,l=!i.storeExists||i.fullyInitialised;if(l){let u=await lr.createStore(a);await lr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) +`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,fo()),process.stdout.write(` config.json written +`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:oo,l=!i.storeExists||i.fullyInitialised;if(l){let u=await lr.createStore(a);await lr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) `)}return(!i.metadataExists||i.fullyInitialised||l)&&(lr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function yo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` +`)),{created:!0,provider:c,dimensions:a}}async function wo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function hl(t,e,n){oo();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=co(),i;try{process.stdout.write(` +`)}}async function hl(t,e,n){co();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=ao(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await po(s),await go(s)}finally{s.close()}await yo(t,n),process.stdout.write(` +`),i=await mo(s),await yo(s)}finally{s.close()}await wo(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}wo.exports={cmdSetup:hl,requireTTY:oo,createPrompter:co,ask:qt,askYesNo:De,askSecret:ao,buildSystemConfigOpenAI:lo,buildSystemConfigStub:ur,buildProjectConfigEmpty:uo,detectSystemConfig:fo,detectProjectInit:ho,validateApiKey:Kt,describeValidationError:Gt,ensureOpenAIKey:mo,runSystemConfigStep:po,runProjectInitStep:go,runInitialIndexStep:yo,KEYWORD_ONLY_DIMENSIONS:io,OPENAI_DEFAULT_MODEL:ro,OPENAI_DEFAULT_DIMENSIONS:so}});var E=require("fs"),F=require("path"),k=tr(),bo=Wi(),{StubProvider:pl}=rr(),{OpenAIProvider:ml,AuthError:Ao}=jt(),me=ar(),Eo=xo(),mr=["research","discussion","investigation","specification"],gl=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}xo.exports={cmdSetup:hl,requireTTY:co,createPrompter:ao,ask:qt,askYesNo:De,askSecret:lo,buildSystemConfigOpenAI:uo,buildSystemConfigStub:ur,buildProjectConfigEmpty:fo,detectSystemConfig:ho,detectProjectInit:po,validateApiKey:Kt,describeValidationError:Gt,ensureOpenAIKey:go,runSystemConfigStep:mo,runProjectInitStep:yo,runInitialIndexStep:wo,KEYWORD_ONLY_DIMENSIONS:oo,OPENAI_DEFAULT_MODEL:so,OPENAI_DEFAULT_DIMENSIONS:io}});var E=require("fs"),F=require("path"),k=tr(),Ao=ji(),{StubProvider:pl}=rr(),{OpenAIProvider:ml,AuthError:mr}=jt(),me=ar(),Eo=So(),gr=["research","discussion","investigation","specification"],gl=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],yl=5,hr=10,gr=1536,So=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function vo(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],yl=5,hr=10,yr=1536,Io=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function vo(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -154,26 +154,26 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results --dry-run Preview without making changes - --help, -h Show this usage and exit 0`;function Y(){return F.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return F.join(Y(),"store.msp")}function q(){return F.join(Y(),"metadata.json")}function se(){return F.join(Y(),".lock")}function wl(t){return new Promise(e=>setTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;isetTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;ixr(s,o,n,r),{maxAttempts:3,backoff:rt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await Do(n,r,yl)}async function xr(t,e,n,r){let s=xl(e.workUnit),i=F.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=F.resolve(t),a=E.readFileSync(c,"utf8"),l=bo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. 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Embeddings produced for dims=${ee}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(p,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of _)await k.insertDocument(p,M);await k.saveStore(p,d);let D=E.existsSync(f)?k.readMetadata(f):null;if(D)D.last_indexed=new Date().toISOString(),Array.isArray(D.pending)||(D.pending=[]),k.writeMetadata(f,D);else{let M={provider:m?n.provider:null,model:m?m.model():null,dimensions:m?m.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),_.length}function Me(t){let{execFileSync:e}=require("child_process");return e("node",[gl,...t],{cwd:process.cwd(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function nt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} +`)}async function To(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function Ir(){let t=[],e;try{let n=Me(["list"]);e=JSON.parse(n)}catch(n){return nt("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of gr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Me(["resolve",`${r}.${s}.${o}`]).trim();l&&E.existsSync(F.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){nt(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Ht(t,e,n){let r=Ir(),s=Y(),i=Q(),o=q();if(E.existsSync(s)||E.mkdirSync(s,{recursive:!0}),E.existsSync(o)){let d=k.readMetadata(o);xr(d,e,n)}let c=null;E.existsSync(i)&&(c=await k.loadStore(i));let a=0,l=0,u=0;for(let d of r){if(c&&await To(c,d.workUnit,d.phase,d.topic)){u++;continue}try{let f={workUnit:d.workUnit,phase:d.phase,topic:d.topic},h=await st(()=>Sr(d.file,f,e,n),{maxAttempts:3,backoff:rt});process.stdout.write(`Indexing ${d.file}... ${h} chunks `),a++,l+=h,E.existsSync(i)&&(c=await k.loadStore(i))}catch(f){await _o(d.file,f.message),process.stderr.write(`Failed to index ${d.file} after 3 attempts: ${f.message}. Added to pending queue. -`),f.stack&&!(f instanceof U)&&process.stderr.write(f.stack+` +`);let h=f instanceof U||f instanceof mr;f.stack&&!h&&process.stderr.write(f.stack+` `)}}await Do(e,n,1/0),process.stdout.write(`Indexed ${a} files (${l} chunks). ${u} already indexed. `)}async function _o(t,e){let n=q(),r=Y(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[]},Array.isArray(i.pending)||(i.pending=[]);let o=i.pending.findIndex(a=>a.file===t),c={file:t,failed_at:new Date().toISOString(),error:e};if(o>=0){let a=i.pending[o];i.pending[o]={...c,attempts:(a.attempts||1)+1}}else i.pending.push({...c,attempts:1});k.writeMetadata(n,i)})}async function Yt(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);Array.isArray(r.pending)&&(r.pending=r.pending.filter(s=>s.file!==t),k.writeMetadata(e,r))})}async function Do(t,e,n){let r=q();if(!E.existsSync(r))return;let s=k.readMetadata(r);if(!Array.isArray(s.pending)||s.pending.length===0)return;let i=s.pending.slice(0,n);for(let o of i){if((o.attempts||0)>=hr){process.stderr.write(`Pending item ${o.file} exceeded ${hr} attempts \u2014 evicting. Last error: ${o.error} `),await Yt(o.file);continue}let c=F.resolve(o.file);if(!E.existsSync(c)){process.stderr.write(`Pending item ${o.file} no longer exists. Removing from queue. -`),await Yt(o.file);continue}let a;try{a=yr(o.file)}catch{await Yt(o.file);continue}try{await st(()=>xr(o.file,a,t,e),{maxAttempts:3,backoff:rt}),await Yt(o.file)}catch(l){await _o(o.file,l.message)}}}var pr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function Mo(t,e){let n=q(),r=Y(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function Io(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function No(){let t=q();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=pr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${pr} attempts \u2014 evicting. -`),await Io(r);continue}try{await Uo({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. -`),await Io(r)}catch(s){try{await Mo({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Uo(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var Il={high:4,medium:3,"low-medium":2,low:1};function bl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Al(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var fr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},El=.1;function vl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=El);let c=Il[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function kl(t){let e=[];for(let n of t)(!n.field||!fr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(fr).join(", ")} +`),await Yt(o.file);continue}let a;try{a=wr(o.file)}catch{await Yt(o.file);continue}try{await st(()=>Sr(o.file,a,t,e),{maxAttempts:3,backoff:rt}),await Yt(o.file)}catch(l){await _o(o.file,l.message)}}}var pr=10;function ge(t){return`${t.workUnit}|${t.phase||""}|${t.topic||""}`}async function Mo(t,e){let n=q(),r=Y(),s=se();E.existsSync(r)||E.mkdirSync(r,{recursive:!0}),await k.withLock(s,async()=>{let i;E.existsSync(n)?i=k.readMetadata(n):i={provider:null,model:null,dimensions:null,last_indexed:null,pending:[],pending_removals:[]},Array.isArray(i.pending_removals)||(i.pending_removals=[]);let o=ge(t),c=i.pending_removals.findIndex(l=>ge(l)===o),a={workUnit:t.workUnit,phase:t.phase||null,topic:t.topic||null,queued_at:new Date().toISOString(),error:e};if(c>=0){let l=i.pending_removals[c];i.pending_removals[c]={...a,attempts:(l.attempts||0)+1}}else i.pending_removals.push({...a,attempts:1});k.writeMetadata(n,i)})}async function bo(t){let e=q(),n=se();E.existsSync(e)&&await k.withLock(n,async()=>{if(!E.existsSync(e))return;let r=k.readMetadata(e);if(!Array.isArray(r.pending_removals))return;let s=ge(t);r.pending_removals=r.pending_removals.filter(i=>ge(i)!==s),k.writeMetadata(e,r)})}async function No(){let t=q();if(!E.existsSync(t))return;let e=k.readMetadata(t);if(!Array.isArray(e.pending_removals)||e.pending_removals.length===0)return;let n=e.pending_removals.slice();for(let r of n){if((r.attempts||0)>=pr){process.stderr.write(`Pending removal for ${ge(r)} exceeded ${pr} attempts \u2014 evicting. +`),await bo(r);continue}try{await Uo({workUnit:r.workUnit,phase:r.phase,topic:r.topic}),process.stderr.write(`Drained pending removal for ${ge(r)}. +`),await bo(r)}catch(s){try{await Mo({workUnit:r.workUnit,phase:r.phase,topic:r.topic},s.message)}catch{}}}}async function Uo(t){let e=Q(),n=se();if(!E.existsSync(e))return 0;let r=0;return await k.withLock(n,async()=>{let s=await k.loadStore(e),i={work_unit:{eq:t.workUnit}};t.phase&&(i.phase={eq:t.phase}),t.topic&&(i.topic={eq:t.topic}),r=await k.removeByFilter(s,i),await k.saveStore(s,e)}),r}var Il={high:4,medium:3,"low-medium":2,low:1};function bl(t){if(typeof t!="string")return null;let e=/^(\d{4})-(\d{2})-(\d{2})$/.exec(t.trim());if(!e){let n=new Date(t);return isNaN(n.getTime())?null:n}return new Date(parseInt(e[1],10),parseInt(e[2],10)-1,parseInt(e[3],10))}function Al(t){let e=new Date(t),n=e.getFullYear(),r=String(e.getMonth()+1).padStart(2,"0"),s=String(e.getDate()).padStart(2,"0");return`${n}-${r}-${s}`}var fr={"work-unit":"work_unit","work-type":"work_type",phase:"phase",topic:"topic",confidence:"confidence"},El=.1;function vl(t,e){if(t.length===0)return t;let n=Math.max(...t.map(i=>i.timestamp||0)),r=Math.min(...t.map(i=>i.timestamp||0)),s=n-r||1;return t.map(i=>{let o=i.score||0;if(Array.isArray(e))for(let l of e)i[l.field]===l.value&&(o+=El);let c=Il[i.confidence]||0;o+=c*.01;let a=((i.timestamp||0)-r)/s;return o+=a*.05,Object.assign({},i,{score:o})}).sort((i,o)=>o.score-i.score)}function kl(t){let e=[];for(let n of t)(!n.field||!fr[n.field])&&(process.stderr.write(`Unknown --boost field: "${n.field}". Valid fields: ${Object.keys(fr).join(", ")} `),process.exit(1)),(n.value==null||n.value==="")&&(process.stderr.write(`--boost:${n.field} requires a value `),process.exit(1)),e.push({field:fr[n.field],value:n.value});return e}function Tl(t,e,n){let r=t.provider,s=t.model,i=t.dimensions;if(r==null)return n?{mode:"upgrade-available",provider:null}:{mode:"keyword-only",provider:null};if(!n)throw new U(`Provider/model changed since last index. Run \`knowledge rebuild\` to reindex. Store was indexed with: provider=${r}, model=${s} @@ -192,16 +192,16 @@ Expected: .workflows/{work_unit}/research/{filename}.md`);o=c[1]}if(o==="."||o== `);return}process.stdout.write(`ready `)}async function Ml(){let t=Y(),e=Q(),n=q(),r=[];if(r.push("=== Knowledge Base Status ==="),r.push(""),!E.existsSync(e)){r.push("Store: not initialized"),r.push("Run `knowledge index` to build the index."),process.stdout.write(r.join(` `)+` -`);return}let s=await k.loadStore(e),i=await k.searchAllFulltext(s);r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let m of i)o[m.work_unit]=(o[m.work_unit]||0)+1,c[m.phase]=(c[m.phase]||0)+1,a[m.work_type]=(a[m.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[m,w]of Object.entries(o))r.push(` ${m}: ${w}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[m,w]of Object.entries(c))r.push(` ${m}: ${w}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[m,w]of Object.entries(a))r.push(` ${m}: ${w}`)}r.push("");let u=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),E.existsSync(n)){let m=k.readMetadata(n);if(r.push(`Last indexed: ${m.last_indexed||"unknown"}`),m.provider?(r.push(`Provider: ${m.provider} (model: ${m.model}, dimensions: ${m.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(m.pending)&&m.pending.length>0){r.push(""),r.push(`Pending items: ${m.pending.length}`);for(let S of m.pending){let T=S.attempts||1;r.push(` ${S.file} \u2014 ${S.error} (attempt ${T}/${hr}, ${S.failed_at})`)}}if(Array.isArray(m.pending_removals)&&m.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${m.pending_removals.length}`);for(let S of m.pending_removals)r.push(` ${ge(S)} \u2014 ${S.error} (attempt ${S.attempts||1}/${pr})`)}let w;try{w=me.loadConfig()}catch{w=null}if(w){let S=me.resolveProvider(w);m.provider&&S&&(m.provider!==w.provider||m.model!==S.model()||m.dimensions!==S.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(m.provider===null||m.provider===void 0)&&S&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=F.resolve(Y(),"..",".."),f=[],h=new Set;for(let m of i)h.has(m.source_file)||(h.add(m.source_file),E.existsSync(F.resolve(d,m.source_file))||f.push(m.source_file));if(f.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${f.length} files`);for(let m of f)r.push(` ${m}`)}try{let m=Sr(),w=[];for(let S of m)await To(s,S.workUnit,S.phase,S.topic)||w.push(S.file);if(w.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${w.length}`);for(let S of w)r.push(` ${S}`)}}catch(m){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${m.message} +`);return}let s=await k.loadStore(e),i=await k.searchAllFulltext(s);r.push(`Total chunks: ${i.length}`);let o={},c={},a={};for(let m of i)o[m.work_unit]=(o[m.work_unit]||0)+1,c[m.phase]=(c[m.phase]||0)+1,a[m.work_type]=(a[m.work_type]||0)+1;if(Object.keys(o).length>0){r.push(""),r.push("By work unit:");for(let[m,w]of Object.entries(o))r.push(` ${m}: ${w}`)}if(Object.keys(c).length>0){r.push(""),r.push("By phase:");for(let[m,w]of Object.entries(c))r.push(` ${m}: ${w}`)}if(Object.keys(a).length>0){r.push(""),r.push("By work type:");for(let[m,w]of Object.entries(a))r.push(` ${m}: ${w}`)}r.push("");let u=(E.statSync(e).size/1024).toFixed(1);if(r.push(`Store size: ${u} KB`),E.existsSync(n)){let m=k.readMetadata(n);if(r.push(`Last indexed: ${m.last_indexed||"unknown"}`),m.provider?(r.push(`Provider: ${m.provider} (model: ${m.model}, dimensions: ${m.dimensions})`),r.push("Mode: Full (hybrid search)")):(r.push("Provider: none"),r.push("Mode: Keyword-only")),Array.isArray(m.pending)&&m.pending.length>0){r.push(""),r.push(`Pending items: ${m.pending.length}`);for(let S of m.pending){let T=S.attempts||1;r.push(` ${S.file} \u2014 ${S.error} (attempt ${T}/${hr}, ${S.failed_at})`)}}if(Array.isArray(m.pending_removals)&&m.pending_removals.length>0){r.push(""),r.push(`Pending removals: ${m.pending_removals.length}`);for(let S of m.pending_removals)r.push(` ${ge(S)} \u2014 ${S.error} (attempt ${S.attempts||1}/${pr})`)}let w;try{w=me.loadConfig()}catch{w=null}if(w){let S=me.resolveProvider(w);m.provider&&S&&(m.provider!==w.provider||m.model!==S.model()||m.dimensions!==S.dimensions())&&(r.push(""),r.push("WARNING: Config has changed since last index. Run `knowledge rebuild` to reindex.")),(m.provider===null||m.provider===void 0)&&S&&(r.push(""),r.push("NOTE: Keyword-only mode but embedding provider configured. Run `knowledge rebuild` for full hybrid search."))}}else r.push("Metadata: missing (run `knowledge rebuild` to fix)");let d=F.resolve(Y(),"..",".."),f=[],h=new Set;for(let m of i)h.has(m.source_file)||(h.add(m.source_file),E.existsSync(F.resolve(d,m.source_file))||f.push(m.source_file));if(f.length>0){r.push(""),r.push(`Orphaned chunks (source deleted): ${f.length} files`);for(let m of f)r.push(` ${m}`)}try{let m=Ir(),w=[];for(let S of m)await To(s,S.workUnit,S.phase,S.topic)||w.push(S.file);if(w.length>0){r.push(""),r.push(`Unindexed completed artifacts: ${w.length}`);for(let S of w)r.push(` ${S}`)}}catch(m){process.stderr.write(`Warning: unindexed-artifact discovery failed: ${m.message} `)}let p=[],x=null;try{x=JSON.parse(Me(["list"]))}catch(m){nt("cmdStatus:list",m)}let g=new Map;if(Array.isArray(x))for(let m of x)m&&m.name&&g.set(m.name,m);for(let m of Object.keys(o)){let w=g.get(m);w&&w.status==="cancelled"&&p.push(`Cancelled work unit still indexed: ${m}`)}let y=i.filter(m=>m.phase==="specification"),I=new Set(y.map(m=>`${m.work_unit}.specification.${m.topic}`));for(let m of I){let[w,,S]=m.split("."),T=g.get(w);if(!T||!T.phases||!T.phases.specification||!T.phases.specification.items)continue;let _=T.phases.specification.items[S];_&&_.status==="superseded"&&p.push(`Superseded spec still indexed: ${m}`)}if(p.length>0){r.push(""),r.push("Consistency warnings:");for(let m of p)r.push(` ${m}`)}process.stdout.write(r.join(` `)+` `)}async function Nl(t,e,n,r){let s=Q(),i=q(),o=se();process.stderr.write(`Warning: This will delete the existing index and rebuild from scratch. This is non-deterministic \u2014 the rebuilt index will differ from the original. Type 'rebuild' to confirm: `),await Ul()!=="rebuild"&&(process.stderr.write(` Aborted. -`),process.exit(1)),Sr().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. +`),process.exit(1)),Ir().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) -`),process.exit(1));let l=s+".bak",u=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,u);let d=r?r.dimensions():n&&n.dimensions||gr,f=await k.createStore(d);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. +`),process.exit(1));let l=s+".bak",u=i+".bak";await k.withLock(o,async()=>{E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u),E.existsSync(s)&&E.renameSync(s,l),E.existsSync(i)&&E.renameSync(i,u);let d=r?r.dimensions():n&&n.dimensions||yr,f=await k.createStore(d);await k.saveStore(f,s),k.writeMetadata(i,{provider:r?n.provider:null,model:r?r.model():null,dimensions:r?r.dimensions():null,last_indexed:new Date().toISOString(),pending:[]})}),process.stdout.write(`Deleted existing index. `);try{await Ht(e,n,r)}catch(d){try{await k.withLock(o,async()=>{E.existsSync(l)&&(E.existsSync(s)&&E.unlinkSync(s),E.renameSync(l,s)),E.existsSync(u)&&(E.existsSync(i)&&E.unlinkSync(i),E.renameSync(u,i))}),process.stderr.write(`Rebuild failed; restored previous index from backup. `)}catch(f){process.stderr.write(`Rebuild failed and rollback also failed. Previous index is at: ${l} @@ -227,6 +227,6 @@ Rename them back manually to recover. Rollback error: ${f.message} `),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await Sl(i,o,c,a);break;case"query":await _l(i,o,c,a);break;case"check":await Dl(i,o,c,a);break;case"status":await Ml();break;case"remove":await Ol(i,o,c,a);break;case"compact":await Ll(i,o,c,a);break;case"rebuild":await Nl(i,o,c,a);break;case"setup":await Eo.cmdSetup(Ht,i,o);break;default:process.stderr.write(`Unknown command "${s}". ${dr} -`),process.exit(1)}}module.exports={parseArgs:vo,buildOptions:ko,deriveIdentity:yr,resolveProviderState:wr,withRetry:st,UserError:U,AuthError:Ao,main:Oo,cmdIndexBulk:Ht,StubProvider:pl,OpenAIProvider:ml,store:k,chunker:bo,config:me,setup:Eo,knowledgeDir:Y,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:mr,KEYWORD_ONLY_DIMENSIONS:gr};require.main===module&&Oo().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +`),process.exit(1)}}module.exports={parseArgs:vo,buildOptions:ko,deriveIdentity:wr,resolveProviderState:xr,withRetry:st,UserError:U,AuthError:mr,main:Oo,cmdIndexBulk:Ht,StubProvider:pl,OpenAIProvider:ml,store:k,chunker:Ao,config:me,setup:Eo,knowledgeDir:Y,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:gr,KEYWORD_ONLY_DIMENSIONS:yr};require.main===module&&Oo().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 1d3ab405d..bc0fd98fa 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -756,13 +756,15 @@ async function cmdIndexBulk(options, cfg, provider) { } catch (err) { // All retries exhausted — add to pending queue. Write the stack to // stderr so debugging does not depend on users capturing it later. - // Skip the stack for UserError — those are user-config validation - // failures and the message line alone is the actionable signal. + // Skip the stack for UserError and AuthError — both are user-config + // failures (validation / bad API key) where the message line alone + // is the actionable signal. await addToPendingQueue(item.file, err.message); process.stderr.write( `Failed to index ${item.file} after 3 attempts: ${err.message}. Added to pending queue.\n` ); - if (err.stack && !(err instanceof UserError)) process.stderr.write(err.stack + '\n'); + const isUserFacing = err instanceof UserError || err instanceof AuthError; + if (err.stack && !isUserFacing) process.stderr.write(err.stack + '\n'); } } From b2d38a80a816904c43c33d2f966bbdefbc11cfa6 Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:41:56 +0100 Subject: [PATCH 76/78] fix(knowledge): walk up from cwd to find project root (#17, real fix) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The earlier #17 commit (246b24e1) moved the orphan check's anchor from process.cwd() to path.resolve(knowledgeDir(), '..', '..') — but knowledgeDir() itself reads process.cwd(), so the resolved root still collapsed back to cwd. Half-fix: orphan check still mis-reported every chunk as orphaned when invoked from a subdirectory. Real fix: add config.findProjectRoot() that walks up from cwd looking for a `.workflows/` directory. Falls back to cwd if none found (so pre-init paths still surface their existing errors). Route every cwd-dependent path through it: - index.js knowledgeDir(), readWorkType (manifest path), runManifest's spawned cwd, the orphan check - setup.js runProjectInitStep's projectDir, cmdSetup's pre-flight workflows/ guard - config.js projectConfigPath() Net effect: every KB CLI command now works correctly from any subdirectory of the project, not just the project root. Add Test 83 to test-knowledge-cli.sh that invokes `knowledge status` from a deeply nested subdirectory and asserts (a) no spurious orphan report and (b) the real chunk count surfaces. Co-Authored-By: Claude Opus 4.7 (1M context) --- .../workflow-knowledge/scripts/knowledge.cjs | 154 +++++++++--------- src/knowledge/config.js | 25 ++- src/knowledge/index.js | 17 +- src/knowledge/setup.js | 6 +- tests/scripts/test-knowledge-cli.sh | 24 +++ 5 files changed, 137 insertions(+), 89 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index f89faa4f8..39dda2539 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,48 +1,48 @@ -"use strict";var Zt=Object.defineProperty;var Po=Object.getOwnPropertyDescriptor;var Ro=Object.getOwnPropertyNames;var Lo=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var we=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),te=(t,e)=>{for(var n in e)Zt(t,n,{get:e[n],enumerable:!0})},Co=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of 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wi(t,e){return new De(e).encodeSharedRef(t)}var xi=v(()=>{Hn()});function Bt(t){return`${t<0?"-":""}0x${Math.abs(t).toString(16).padStart(2,"0")}`}var Si=v(()=>{});var ba,Aa,Ft,Ii=v(()=>{Ot();ba=16,Aa=16,Ft=class{hit=0;miss=0;caches;maxKeyLength;maxLengthPerKey;constructor(e=ba,n=Aa){this.maxKeyLength=e,this.maxLengthPerKey=n,this.caches=[];for(let r=0;r0&&e<=this.maxKeyLength}find(e,n,r){let s=this.caches[r-1];e:for(let i of s){let o=i.bytes;for(let c=0;c=this.maxLengthPerKey?r[Math.random()*r.length|0]=s:r.push(s)}decode(e,n,r){let s=this.find(e,n,r);if(s!=null)return this.hit++,s;this.miss++;let i=Bn(e,n,r),o=Uint8Array.prototype.slice.call(e,n,n+r);return this.store(o,i),i}}});var Jn,et,Ai,Ea,Xn,Qe,Zn,va,bi,ka,G,zt=v(()=>{Si();$t();Ct();Ot();Yn();Ii();Pt();Jn="array",et="map_key",Ai="map_value",Ea=t=>{if(typeof t=="string"||typeof t=="number")return t;throw new B("The type of key must be string or number but "+typeof t)},Xn=class{stack=[];stackHeadPosition=-1;get length(){return 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Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function cl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=cr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ue.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` +`)}finally{C.closeSync(a)}C.chmodSync(c,384),C.renameSync(c,t);try{C.chmodSync(t,384)}catch{}}function ro(t,e){if(!t)return null;let n=Zi[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||no(),s;try{s=cr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function al(t){let e=t&&t.systemPath||Qi(),n=t&&t.projectPath||to(),r=or(e),s=or(n),i=Object.assign({},Xi);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=ro(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function ll(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new il(n!=null?{dimensions:n}:void 0)}if(!ir.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${ir.join(", ")}`);return t._api_key&&e==="openai"?new ol({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function ul(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ue.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` +`,"utf8"),C.renameSync(r,t)}so.exports={DEFAULTS:Xi,AVAILABLE_PROVIDERS:ir,PROVIDER_ENV_VARS:Zi,systemConfigPath:Qi,projectConfigPath:to,findProjectRoot:eo,credentialsPath:no,readConfigFile:or,loadConfig:al,loadCredentials:cr,writeCredentials:cl,resolveApiKey:ro,resolveProvider:ll,writeConfigFile:ul}});var Io=xe((_h,So)=>{"use strict";var de=require("fs"),fe=require("path"),dl=require("readline"),$=ar(),lr=tr(),{OpenAIProvider:fl}=jt(),io="text-embedding-3-small",oo=1536,co=1536;function ao(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. +`),process.exit(1))}function lo(){let t=dl.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` Setup cancelled. -`),t.close(),process.exit(130)}),t}function qt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function De(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function lo(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` +`),t.close(),process.exit(130)}),t}function qt(t,e,n){let r=n!=null&&n!==""?` [${n}]`:"";return new Promise(s=>{t.question(`${e}${r}: `,i=>{let o=(i||"").trim();s(o===""&&n!==void 0&&n!==null?String(n):o)})})}async function Me(t,e,n){let r=n?"Y/n":"y/N";return new Promise(s=>{t.question(`${e} (${r}): `,i=>{let o=(i||"").trim().toLowerCase();if(o==="")return s(!!n);s(o==="y"||o==="yes")})})}function uo(t,e){return new Promise(n=>{let r=process.stdin,s=process.stdout;if(!r.isTTY||typeof r.setRawMode!="function"){t.question(e,l=>n((l||"").trim()));return}s.write(e),t.pause();let i=r.isRaw===!0;r.setRawMode(!0),r.resume(),r.setEncoding("utf8");let o="",c=()=>{r.removeListener("data",a);try{r.setRawMode(i)}catch{}r.pause(),t.resume()},a=l=>{for(let u of l.toString("utf8")){if(u===` `||u==="\r")return c(),s.write(` `),n(o.trim());if(u===""){c(),s.write(` `),process.exit(130);return}if(u==="")return c(),s.write(` -`),n(o.trim());if(u==="\x7F"||u==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}u<" "||(o+=u,s.write("*"))}};r.on("data",a)})}function uo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function ur(){return{knowledge:{similarity_threshold:B.DEFAULTS.similarity_threshold,decay_months:B.DEFAULTS.decay_months}}}function fo(){return{knowledge:{}}}function ho(t){if(!le.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=le.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function po(t){let e=ue.join(t,"config.json"),n=ue.join(t,"store.msp"),r=ue.join(t,"metadata.json"),s=le.existsSync(t),i=le.existsSync(e),o=le.existsSync(n),c=le.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function Kt({apiKey:t,model:e,dimensions:n}){let s=await new dl({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Gt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function mo(t){let e=B.systemConfigPath(),n=ho(e);if(n.exists&&n.valid){process.stdout.write(` +`),n(o.trim());if(u==="\x7F"||u==="\b"){o.length>0&&(o=o.slice(0,-1),s.write("\b \b"));continue}u<" "||(o+=u,s.write("*"))}};r.on("data",a)})}function fo({model:t,dimensions:e}){return{knowledge:{provider:"openai",model:t,dimensions:e,similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function ur(){return{knowledge:{similarity_threshold:$.DEFAULTS.similarity_threshold,decay_months:$.DEFAULTS.decay_months}}}function ho(){return{knowledge:{}}}function po(t){if(!de.existsSync(t))return{exists:!1,valid:!1,knowledge:null};try{let e=de.readFileSync(t,"utf8"),n=JSON.parse(e);return!n||typeof n!="object"||!n.knowledge||typeof n.knowledge!="object"||Array.isArray(n.knowledge)?{exists:!0,valid:!1,knowledge:null,reason:'missing or invalid "knowledge" key'}:{exists:!0,valid:!0,knowledge:n.knowledge}}catch(e){return{exists:!0,valid:!1,knowledge:null,reason:e.message}}}function mo(t){let e=fe.join(t,"config.json"),n=fe.join(t,"store.msp"),r=fe.join(t,"metadata.json"),s=de.existsSync(t),i=de.existsSync(e),o=de.existsSync(n),c=de.existsSync(r);return{dirExists:s,configExists:i,storeExists:o,metadataExists:c,fullyInitialised:i&&o&&c,partiallyInitialised:s&&!(i&&o&&c)}}async function Kt({apiKey:t,model:e,dimensions:n}){let s=await new fl({apiKey:t,model:e,dimensions:n}).embed("knowledge base setup test");if(!Array.isArray(s)||s.length!==n)throw new Error(`Expected a vector of length ${n}, got ${Array.isArray(s)?s.length:typeof s}`);return!0}function Gt(t){let e=t&&t.message||String(t);return/401/.test(e)||/invalid or expired/i.test(e)?{message:"The API key was rejected (HTTP 401).",hint:"Check that the key is active and not revoked. Free-tier keys also need billing enabled for /v1/embeddings. Create a fresh key at https://platform.openai.com/api-keys and try again."}:/403/.test(e)||/permission/i.test(e)?{message:"The API key does not have permission for embeddings (HTTP 403).",hint:"If this is a restricted key, check its allowed endpoints in the OpenAI dashboard. Create a key with Embeddings access enabled."}:/429/.test(e)||/rate limit/i.test(e)?{message:"Rate limit hit during validation (HTTP 429).",hint:"Your account may be out of quota, or the default rate limit is saturated. Wait a moment and retry, or check billing at https://platform.openai.com/account."}:/network error/i.test(e)||/ENOTFOUND/.test(e)||/ECONN/.test(e)||/ETIMEDOUT/.test(e)?{message:"Could not reach OpenAI (network error).",hint:"Check your internet connection, VPN, or corporate proxy. No key was written \u2014 you can re-run `knowledge setup` once the connection is stable."}:/HTTP 5\d\d/.test(e)?{message:"OpenAI returned a server error during validation.",hint:"Transient on their side. Retry in a minute."}:{message:"API key validation failed.",hint:`Error detail: ${e}`}}async function go(t){let e=$.systemConfigPath(),n=po(e);if(n.exists&&n.valid){process.stdout.write(` System config already exists at ${e} `),process.stdout.write(` Current settings: `);let u=n.knowledge;if(process.stdout.write(` provider: ${u.provider==null?"(none \u2014 stub mode)":u.provider} `),u.model&&process.stdout.write(` model: ${u.model} `),u.dimensions&&process.stdout.write(` dimensions: ${u.dimensions} `),process.stdout.write(` -`),!await De(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. +`),!await Me(t,"Reconfigure system settings?",!1))return process.stdout.write(`Keeping existing system config. `),{provider:u.provider||null,previouslyStub:!u.provider}}else n.exists&&!n.valid?(process.stdout.write(` System config at ${e} is not valid: ${n.reason} -`),await De(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. +`),await Me(t,"Overwrite it?",!0)||(process.stdout.write(`Aborting setup so you can fix the file manually. `),process.exit(1))):process.stdout.write(` No system config found at ${e}. Creating a new one. `);let r=n.exists&&n.valid&&!n.knowledge.provider;process.stdout.write(` @@ -51,30 +51,30 @@ Embedding provider: `),process.stdout.write(` skip \u2014 Stub mode (keyword-only search, no embeddings) `);let s;for(;s=(await qt(t,"Provider (openai / skip)","openai")).toLowerCase(),!(s==="openai"||s==="skip");)process.stdout.write(`Unknown choice "${s}". Enter "openai" or "skip". -`);if(s==="skip")return B.writeConfigFile(e,ur()),process.stdout.write(` +`);if(s==="skip")return $.writeConfigFile(e,ur()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await qt(t,"Embedding model",so),o=await qt(t,"Vector dimensions",String(io));/^\d+$/.test(o.trim())||(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Run `knowledge setup` again later to configure a provider.\n"),{provider:null,previouslyStub:r};let i=await qt(t,"Embedding model",io),o=await qt(t,"Vector dimensions",String(oo));/^\d+$/.test(o.trim())||(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. `),process.exit(1));let c=parseInt(o,10);(!Number.isInteger(c)||c<=0)&&(process.stderr.write(`Invalid dimensions: "${o}". Must be a positive integer. -`),process.exit(1));let a=B.PROVIDER_ENV_VARS.openai;return await go(t,{envVar:a,model:i,dimensions:c})==="opted-out"?(B.writeConfigFile(e,ur()),process.stdout.write(` +`),process.exit(1));let a=$.PROVIDER_ENV_VARS.openai;return await yo(t,{envVar:a,model:i,dimensions:c})==="opted-out"?($.writeConfigFile(e,ur()),process.stdout.write(` Wrote stub-mode system config to ${e} -`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Re-run `knowledge setup` once you have a working API key.\n"),{provider:null,previouslyStub:r}):(B.writeConfigFile(e,uo({model:i,dimensions:c})),process.stdout.write(` +`),process.stdout.write("Stub mode uses keyword-only (BM25) search. Semantic search is disabled. Re-run `knowledge setup` once you have a working API key.\n"),{provider:null,previouslyStub:r}):($.writeConfigFile(e,fo({model:i,dimensions:c})),process.stdout.write(` Wrote system config to ${e} -`),{provider:"openai",previouslyStub:r})}async function go(t,{envVar:e,model:n,dimensions:r}){let s=B.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` +`),{provider:"openai",previouslyStub:r})}async function yo(t,{envVar:e,model:n,dimensions:r}){let s=$.credentialsPath(),i=process.env[e];if(i&&i.trim()!==""){process.stdout.write(` Using API key from $${e} \u2014 validating via a test embed... `);try{return await Kt({apiKey:i.trim(),model:n,dimensions:r}),process.stdout.write(`API key works. `),"validated"}catch(c){let{message:a,hint:l}=Gt(c);process.stderr.write(` ${a} ${l} `),process.stderr.write(`The failing key came from $${e}. Fix or unset it in your shell, then re-run \`knowledge setup\`. -`),process.exit(1)}}let o=B.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` +`),process.exit(1)}}let o=$.resolveApiKey("openai",{credentialsPath:s});if(o){process.stdout.write(` Found an existing API key in ${s} \u2014 validating via a test embed... `);try{return await Kt({apiKey:o,model:n,dimensions:r}),process.stdout.write(`API key works. `),"validated"}catch(c){let{message:a,hint:l}=Gt(c);process.stdout.write(`${a} ${l} -`),await De(t,"Enter a new key to replace it?",!0)||(process.stderr.write(` +`),await Me(t,"Enter a new key to replace it?",!0)||(process.stderr.write(` Keeping the existing stored key would leave setup in an inconsistent state. Edit ${s} or re-run \`knowledge setup\` when you have a new key. -`),process.exit(1))}}return await fl(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function fl(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` +`),process.exit(1))}}return await hl(t,{envVar:e,model:n,dimensions:r,credPath:s})}async function hl(t,{envVar:e,model:n,dimensions:r,credPath:s}){for(process.stdout.write(` OpenAI API Key -------------- Semantic search in the knowledge base relies on OpenAI embeddings. @@ -90,45 +90,45 @@ Your key will be stored at: Setting $${e} in your shell takes precedence and overrides the stored key, so you can swap it without editing the file. -`);;){let i=await lo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. +`);;){let i=await uo(t,"API key (input hidden): ");if(i===""){process.stdout.write(`Empty input \u2014 enter the key, or Ctrl-C to abort setup. `);continue}process.stdout.write(` Validating via a test embed... `);try{await Kt({apiKey:i,model:n,dimensions:r})}catch(o){let{message:c,hint:a}=Gt(o);if(process.stdout.write(`${c} ${a} -`),!await De(t,"Try a different key?",!0))return process.stdout.write(`No key stored. Falling back to stub mode \u2014 semantic search disabled. +`),!await Me(t,"Try a different key?",!0))return process.stdout.write(`No key stored. Falling back to stub mode \u2014 semantic search disabled. Set $${e} in your shell or re-run \`knowledge setup\` once you have a working key. -`),"opted-out";continue}return B.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`),"validated"}}async function yo(t){let e=ue.resolve(process.cwd(),".workflows",".knowledge"),n=ue.join(e,"config.json"),r=ue.join(e,"store.msp"),s=ue.join(e,"metadata.json"),i=po(e);if(i.fullyInitialised){if(process.stdout.write(` +`),"opted-out";continue}return $.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). +`),"validated"}}async function wo(t){let e=fe.resolve($.findProjectRoot(),".workflows",".knowledge"),n=fe.join(e,"config.json"),r=fe.join(e,"store.msp"),s=fe.join(e,"metadata.json"),i=mo(e);if(i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} -`),!await De(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. +`),!await Me(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` Project knowledge base partially initialised at ${e} `),process.stdout.write(` Missing files will be created. `)):process.stdout.write(` Initialising project knowledge base at ${e} -`);le.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&(B.writeConfigFile(n,fo()),process.stdout.write(` config.json written -`));let o=B.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:oo,l=!i.storeExists||i.fullyInitialised;if(l){let u=await lr.createStore(a);await lr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) +`);de.mkdirSync(e,{recursive:!0}),(!i.configExists||i.fullyInitialised)&&($.writeConfigFile(n,ho()),process.stdout.write(` config.json written +`));let o=$.loadConfig(),c=o.provider||null,a=Number.isInteger(o.dimensions)&&o.dimensions>0?o.dimensions:co,l=!i.storeExists||i.fullyInitialised;if(l){let u=await lr.createStore(a);await lr.saveStore(u,r),process.stdout.write(` store.msp written (${a} dimensions) `)}return(!i.metadataExists||i.fullyInitialised||l)&&(lr.writeMetadata(s,{provider:c||null,model:c&&o.model?o.model:null,dimensions:c?a:null,last_indexed:null,pending:[]}),process.stdout.write(` metadata.json written -`)),{created:!0,provider:c,dimensions:a}}async function wo(t,e){let n=B.loadConfig(),r=B.resolveProvider(n);process.stdout.write(` +`)),{created:!0,provider:c,dimensions:a}}async function xo(t,e){let n=$.loadConfig(),r=$.resolveProvider(n);process.stdout.write(` Initial indexing `),process.stdout.write(`---------------- `);try{await t(e||{},n,r)}catch(s){process.stderr.write(` Initial indexing hit an error: ${s.message} Project is initialised; run \`knowledge index\` later to retry. -`)}}async function hl(t,e,n){co();let r=ue.resolve(process.cwd(),".workflows");le.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. -`),process.exit(1));let s=ao(),i;try{process.stdout.write(` +`)}}async function pl(t,e,n){ao();let r=fe.resolve($.findProjectRoot(),".workflows");de.existsSync(r)||(process.stderr.write(`No .workflows/ directory found. Initialise a workflow project first. +`),process.exit(1));let s=lo(),i;try{process.stdout.write(` Knowledge base setup `),process.stdout.write(`==================== -`),i=await mo(s),await yo(s)}finally{s.close()}await wo(t,n),process.stdout.write(` +`),i=await go(s),await wo(s)}finally{s.close()}await xo(t,n),process.stdout.write(` Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}xo.exports={cmdSetup:hl,requireTTY:co,createPrompter:ao,ask:qt,askYesNo:De,askSecret:lo,buildSystemConfigOpenAI:uo,buildSystemConfigStub:ur,buildProjectConfigEmpty:fo,detectSystemConfig:ho,detectProjectInit:po,validateApiKey:Kt,describeValidationError:Gt,ensureOpenAIKey:go,runSystemConfigStep:mo,runProjectInitStep:yo,runInitialIndexStep:wo,KEYWORD_ONLY_DIMENSIONS:oo,OPENAI_DEFAULT_MODEL:so,OPENAI_DEFAULT_DIMENSIONS:io}});var E=require("fs"),F=require("path"),k=tr(),Ao=ji(),{StubProvider:pl}=rr(),{OpenAIProvider:ml,AuthError:mr}=jt(),me=ar(),Eo=So(),gr=["research","discussion","investigation","specification"],gl=(()=>{let t=F.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=F.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}So.exports={cmdSetup:pl,requireTTY:ao,createPrompter:lo,ask:qt,askYesNo:Me,askSecret:uo,buildSystemConfigOpenAI:fo,buildSystemConfigStub:ur,buildProjectConfigEmpty:ho,detectSystemConfig:po,detectProjectInit:mo,validateApiKey:Kt,describeValidationError:Gt,ensureOpenAIKey:yo,runSystemConfigStep:go,runProjectInitStep:wo,runInitialIndexStep:xo,KEYWORD_ONLY_DIMENSIONS:co,OPENAI_DEFAULT_MODEL:io,OPENAI_DEFAULT_DIMENSIONS:oo}});var E=require("fs"),z=require("path"),k=tr(),Eo=ji(),{StubProvider:ml}=rr(),{OpenAIProvider:gl,AuthError:mr}=jt(),Y=ar(),vo=Io(),gr=["research","discussion","investigation","specification"],yl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],yl=5,hr=10,yr=1536,Io=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function vo(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],wl=5,hr=10,yr=1536,bo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function ko(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -154,50 +154,50 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results --dry-run Preview without making changes - --help, -h Show this usage and exit 0`;function Y(){return F.resolve(process.cwd(),".workflows",".knowledge")}function Q(){return F.join(Y(),"store.msp")}function q(){return F.join(Y(),"metadata.json")}function se(){return F.join(Y(),".lock")}function wl(t){return new Promise(e=>setTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;isetTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;iSr(s,o,n,r),{maxAttempts:3,backoff:rt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await Do(n,r,yl)}async function Sr(t,e,n,r){let s=xl(e.workUnit),i=F.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=F.resolve(t),a=E.readFileSync(c,"utf8"),l=Ao.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. 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This is non-deterministic \u2014 the rebuilt index will differ from the original. -Type 'rebuild' to confirm: `),await Ul()!=="rebuild"&&(process.stderr.write(` +Type 'rebuild' to confirm: `),await Ol()!=="rebuild"&&(process.stderr.write(` Aborted. `),process.exit(1)),Ir().length===0&&(process.stderr.write(`No completed artifacts found to index. Aborting rebuild \u2014 the existing index has NOT been modified. (If you believe this is wrong, check that .workflows/ exists and that work units have items with status "completed".) @@ -207,26 +207,26 @@ Aborted. ${l} ${u} Rename them back manually to recover. 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] [--topic ] [--dry-run] +`)}throw d}E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u)}function Ol(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Pl(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

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Queued for automatic retry on next remove/compact. +`),process.exit(1)}}function Rl(t){return t.topic?`${t.workUnit}/${t.phase}/${t.topic}`:t.phase?`${t.workUnit}/${t.phase}`:`${t.workUnit} (all phases)`}function Ll(t){try{let e=Ne(["get",t,"status"]).trim(),n=null;try{n=Ne(["get",t,"completed_at"]).trim(),(n===""||n==="undefined"||n==="null")&&(n=null)}catch(r){nt(`getWorkUnitMeta:get(${t}.completed_at)`,r)}return{status:e,completed_at:n}}catch(e){return nt(`getWorkUnitMeta:get(${t}.status)`,e),null}}async function Cl(t,e,n){await Uo();let r=ee(),s=ie(),i=n&&n.decay_months!==void 0?n.decay_months:Y.DEFAULTS.decay_months;if(i===!1||i===null){process.stdout.write(`Compaction disabled `);return}(!Number.isInteger(i)||i<0)&&(process.stderr.write(`Invalid decay_months: ${JSON.stringify(i)}. Expected false or a non-negative integer. -`),process.exit(1));let o=i;if(!E.existsSync(r))return;let c=await k.loadStore(r),a=new Date,l=new Date(a);l.setMonth(l.getMonth()-o);let u=await k.searchAllFulltext(c);if(u.length===0)return;let d={};for(let g of u)d[g.work_unit]||(d[g.work_unit]=[]),d[g.work_unit].push(g);let f=[],h=[];for(let[g,y]of Object.entries(d)){let I=Rl(g);if(!I||I.status!=="completed"||!I.completed_at)continue;let m=bl(I.completed_at);if(!m||isNaN(m.getTime()))continue;let w=new Date(m);if(w.setMonth(w.getMonth()+o),w>a)continue;let S=y.filter(_=>_.phase!=="specification");if(S.length===0)continue;let T=new Set(S.map(_=>_.phase));f.push({workUnit:g,count:S.length,phases:T});for(let _ of S)h.push({work_unit:_.work_unit,phase:_.phase,topic:_.topic})}if(f.length===0)return;let p=f.reduce((g,y)=>g+y.count,0);if(e.dryRun){let g=[];g.push(`[dry-run] Compacted: removed ${p} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let y of f)g.push(` \u2022 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(completed > ${o} months ago)`);for(let y of f)g.push(` \u2022 ${y.workUnit}: ${y.count} chunks (${Array.from(y.phases).join(", ")})`);process.stdout.write(g.join(` `)+` `);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),y=new Set;for(let I of h){let m=`${I.work_unit}|${I.phase}|${I.topic}`;y.has(m)||(y.add(m),await k.removeByIdentity(g,I))}await k.saveStore(g,r)});let x=[];x.push(`Compacted: removed ${p} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)x.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(x.join(` `)+` -`)}async function Oo(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(dr+` -`),process.exit(0));let{positional:e,flags:n,boosts:r}=vo(t),s=e[0],i=e.slice(1),o=ko(n,r);s||(process.stderr.write(dr+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=me.loadConfig(),a=me.resolveProvider(c)),s){case"index":await Sl(i,o,c,a);break;case"query":await _l(i,o,c,a);break;case"check":await Dl(i,o,c,a);break;case"status":await Ml();break;case"remove":await Ol(i,o,c,a);break;case"compact":await Ll(i,o,c,a);break;case"rebuild":await Nl(i,o,c,a);break;case"setup":await Eo.cmdSetup(Ht,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`)}async function Po(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(dr+` +`),process.exit(0));let{positional:e,flags:n,boosts:r}=ko(t),s=e[0],i=e.slice(1),o=To(n,r);s||(process.stderr.write(dr+` +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=Y.loadConfig(),a=Y.resolveProvider(c)),s){case"index":await Il(i,o,c,a);break;case"query":await Dl(i,o,c,a);break;case"check":await Ml(i,o,c,a);break;case"status":await Nl();break;case"remove":await Pl(i,o,c,a);break;case"compact":await Cl(i,o,c,a);break;case"rebuild":await Ul(i,o,c,a);break;case"setup":await vo.cmdSetup(Ht,i,o);break;default:process.stderr.write(`Unknown command "${s}". ${dr} -`),process.exit(1)}}module.exports={parseArgs:vo,buildOptions:ko,deriveIdentity:wr,resolveProviderState:xr,withRetry:st,UserError:U,AuthError:mr,main:Oo,cmdIndexBulk:Ht,StubProvider:pl,OpenAIProvider:ml,store:k,chunker:Ao,config:me,setup:Eo,knowledgeDir:Y,storePath:Q,metadataPath:q,lockFilePath:se,INDEXED_PHASES:gr,KEYWORD_ONLY_DIMENSIONS:yr};require.main===module&&Oo().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +`),process.exit(1)}}module.exports={parseArgs:ko,buildOptions:To,deriveIdentity:wr,resolveProviderState:xr,withRetry:st,UserError:U,AuthError:mr,main:Po,cmdIndexBulk:Ht,StubProvider:ml,OpenAIProvider:gl,store:k,chunker:Eo,config:Y,setup:vo,knowledgeDir:Q,storePath:ee,metadataPath:q,lockFilePath:ie,INDEXED_PHASES:gr,KEYWORD_ONLY_DIMENSIONS:yr};require.main===module&&Po().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/config.js b/src/knowledge/config.js index 60cff75e9..8670202be 100644 --- a/src/knowledge/config.js +++ b/src/knowledge/config.js @@ -40,12 +40,32 @@ function systemConfigPath() { } /** - * Resolve the project config path relative to CWD. + * Find the project root by walking up from `startFrom` (default cwd) + * looking for a `.workflows/` directory. This lets KB commands work + * regardless of which subdirectory of the project the user invoked + * them from. Falls back to `startFrom` if no `.workflows/` is found + * — callers (e.g. setup) can then surface their own pre-init error. + * @param {string} [startFrom] + * @returns {string} + */ +function findProjectRoot(startFrom) { + let dir = path.resolve(startFrom || process.cwd()); + const fallback = dir; + while (true) { + if (fs.existsSync(path.join(dir, '.workflows'))) return dir; + const parent = path.dirname(dir); + if (parent === dir) return fallback; + dir = parent; + } +} + +/** + * Resolve the project config path relative to the project root. * @param {string} [cwd] * @returns {string} */ function projectConfigPath(cwd) { - return path.join(cwd || process.cwd(), '.workflows', '.knowledge', 'config.json'); + return path.join(findProjectRoot(cwd), '.workflows', '.knowledge', 'config.json'); } /** @@ -355,6 +375,7 @@ module.exports = { PROVIDER_ENV_VARS, systemConfigPath, projectConfigPath, + findProjectRoot, credentialsPath, readConfigFile, loadConfig, diff --git a/src/knowledge/index.js b/src/knowledge/index.js index bc0fd98fa..6e35a71a5 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -179,7 +179,7 @@ Other options: // --------------------------------------------------------------------------- function knowledgeDir() { - return path.resolve(process.cwd(), '.workflows', '.knowledge'); + return path.resolve(config.findProjectRoot(), '.workflows', '.knowledge'); } function storePath() { @@ -321,7 +321,7 @@ function deriveIdentity(filePath) { * Read the work_type from the work unit's manifest.json. */ function readWorkType(workUnit) { - const manifestFile = path.resolve(process.cwd(), '.workflows', workUnit, 'manifest.json'); + const manifestFile = path.resolve(config.findProjectRoot(), '.workflows', workUnit, 'manifest.json'); if (!fs.existsSync(manifestFile)) { throw new UserError(`Work unit manifest not found: ${manifestFile}`); } @@ -606,8 +606,11 @@ async function indexSingleFile(sourceFile, identity, cfg, provider) { */ function runManifest(args) { const { execFileSync } = require('child_process'); + // Spawn with cwd anchored at the project root so the manifest CLI's + // own cwd-relative resolution lands at the right place even when KB + // commands are invoked from a subdirectory. return execFileSync('node', [MANIFEST_JS, ...args], { - cwd: process.cwd(), + cwd: config.findProjectRoot(), encoding: 'utf8', stdio: ['pipe', 'pipe', 'pipe'], }); @@ -1482,10 +1485,10 @@ async function cmdStatus() { } // 7. Orphan detection — source files that no longer exist. - // Resolve relative to the project root (where .workflows/.knowledge - // lives) rather than process.cwd(), so status invoked from a - // subdirectory does not mark every chunk as orphaned. - const projectRoot = path.resolve(knowledgeDir(), '..', '..'); + // Resolve relative to the project root (found by walking up from cwd) + // rather than cwd directly, so status invoked from a subdirectory + // does not mark every chunk as orphaned. + const projectRoot = config.findProjectRoot(); const orphans = []; const seenSources = new Set(); for (const c of allChunks) { diff --git a/src/knowledge/setup.js b/src/knowledge/setup.js index b4279c732..bd8ac32eb 100644 --- a/src/knowledge/setup.js +++ b/src/knowledge/setup.js @@ -525,7 +525,7 @@ async function promptForKeyAndStore(rl, { envVar, model, dimensions, credPath }) // --------------------------------------------------------------------------- async function runProjectInitStep(rl) { - const projectDir = path.resolve(process.cwd(), '.workflows', '.knowledge'); + const projectDir = path.resolve(config.findProjectRoot(), '.workflows', '.knowledge'); const projectConfigFile = path.join(projectDir, 'config.json'); const storeFile = path.join(projectDir, 'store.msp'); const metadataFile = path.join(projectDir, 'metadata.json'); @@ -616,8 +616,8 @@ async function runInitialIndexStep(cmdIndexBulk, options) { async function cmdSetup(cmdIndexBulk, args, options) { requireTTY(); - // Guard: .workflows/ must exist. - const workflowsDir = path.resolve(process.cwd(), '.workflows'); + // Guard: .workflows/ must exist somewhere at or above cwd. + const workflowsDir = path.resolve(config.findProjectRoot(), '.workflows'); if (!fs.existsSync(workflowsDir)) { process.stderr.write( 'No .workflows/ directory found. Initialise a workflow project first.\n' diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index a70dda026..875d1a06b 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -1756,6 +1756,30 @@ assert_eq "store still present after rebuild" "true" \ "$([ -f "$TEST_ROOT/.workflows/.knowledge/store.msp" ] && echo true || echo false)" teardown_project +# --- Test 83: Subdirectory invocation finds project root --- +# Pre-fix, knowledgeDir() / orphan check / manifest reads anchored at +# process.cwd(). Running `knowledge status` from a subdirectory of the +# project marked every chunk as orphaned (and broke other commands). +# After the findProjectRoot walk-up, KB commands work from any +# subdirectory of a project. +echo "Test 83: Subdirectory invocation" +setup_project +create_work_unit "subdir-wu" "feature" "Subdir" +write_stub_config +create_discussion_file "subdir-wu" "subdir-wu" +cd "$TEST_ROOT" && node "$MANIFEST_JS" init-phase subdir-wu.discussion.subdir-wu >/dev/null 2>&1 +run_kb index .workflows/subdir-wu/discussion/subdir-wu.md >/dev/null 2>&1 +# Now invoke status from a deeply nested subdirectory of the project. +mkdir -p "$TEST_ROOT/.workflows/subdir-wu/discussion" +cd "$TEST_ROOT/.workflows/subdir-wu/discussion" +status_from_subdir=$(node "$BUNDLE" status 2>&1) +cd "$TEST_ROOT" +assert_eq "status from subdir reports zero orphans" "true" \ + "$(echo "$status_from_subdir" | grep -q 'Orphaned chunks' && echo false || echo true)" +assert_eq "status from subdir reports the indexed chunks" "true" \ + "$(echo "$status_from_subdir" | grep -qE 'Total chunks: [1-9]' && echo true || echo false)" +teardown_project + # --- Summary --- echo "" echo "Results: $PASS passed, $FAIL failed" From d868591d1a97d8d2ddbc8610d0a05381b791b90d Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:46:55 +0100 Subject: [PATCH 77/78] fix(knowledge): close partial-state and stranded-chunks edge cases MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Two follow-on fixes to the post-audit work — both real edge cases the review surfaced as "documented but not actually fixed": - Setup partial-state inverse (#7 follow-on): when store.msp exists but metadata.json is missing, runProjectInitStep would write fresh metadata against an existing populated store. Provider/model/ dimensions in the new metadata could disagree with whatever the store was originally indexed with — surfacing as a misleading error on the next index, or worse, silently mixing incompatible vectors. Detect the state up front and abort with a hint to run `knowledge rebuild`. - Orphan-chunk removal (#12 follow-on): when the registry has no entry for a work unit but the store still has chunks for it (post-absorption / manual mutation), `knowledge remove --work-unit ` previously hit the typo error path with no actionable recovery. Now: on registry-not-found, probe the store; if chunks exist, treat as an orphan cleanup and proceed (with a stderr notice naming the case); if not, surface a sharper typo error ("not found in manifest, and no chunks for it exist either"). Tests: - Test 84: orphan cleanup succeeds, surfaces the notice, reports removed chunks; subsequent run on the now-empty case rejects with the sharper typo error. - Test 85: drives runProjectInitStep directly with metadata absent + store present, asserts the inconsistent-state guard fires and the message mentions `knowledge rebuild`. Co-Authored-By: Claude Opus 4.7 (1M context) --- .../workflow-knowledge/scripts/knowledge.cjs | 76 ++++++++++--------- src/knowledge/index.js | 39 ++++++++-- src/knowledge/setup.js | 17 +++++ tests/scripts/test-knowledge-cli.sh | 73 ++++++++++++++++++ 4 files changed, 163 insertions(+), 42 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 39dda2539..39e595801 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -1,4 +1,4 @@ -"use strict";var Zt=Object.defineProperty;var Ro=Object.getOwnPropertyDescriptor;var Lo=Object.getOwnPropertyNames;var Co=Object.prototype.hasOwnProperty;var v=(t,e)=>()=>(t&&(e=t(t=0)),e);var xe=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports),ne=(t,e)=>{for(var n in e)Zt(t,n,{get:e[n],enumerable:!0})},$o=(t,e,n,r)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of 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`),u=c?Qa(l):l;if(u.trim()==="")return[];let d=u.split(` @@ -23,7 +23,7 @@ Read more at https://docs.orama.com/docs/orama-js/plugins/plugin-secure-proxy#pl `));a.trim()!==""&&i.push({heading:t.heading,headingLine:t.headingLine,text:a})}for(let c=0;c{"use strict";var qi="stub";function rl(t){let e=2166136261;for(let n=0;n>>0}function sl(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var nr=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=rl(n)||1,s=sl(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Gi="text-embedding-3-small",Yi="https://api.openai.com/v1/embeddings",tt=class extends 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${s.data?s.data.length:0}`);return[...s.data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var C=require("fs"),ue=require("path"),Ji=require("os"),{StubProvider:il}=rr(),{OpenAIProvider:ol}=jt(),Xi={similarity_threshold:.8,decay_months:6},ir=["stub","openai"],Zi={openai:"OPENAI_API_KEY"};function Qi(){return ue.join(Ji.homedir(),".config","workflows","config.json")}function eo(t){let e=ue.resolve(t||process.cwd()),n=e;for(;;){if(C.existsSync(ue.join(e,".workflows")))return e;let r=ue.dirname(e);if(r===e)return n;e=r}}function to(t){return ue.join(eo(t),".workflows",".knowledge","config.json")}function no(){return ue.join(Ji.homedir(),".config","workflows","credentials.json")}function or(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function cr(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function cl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=cr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ue.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` +`).trim()===""}Wi.exports={chunk:Za}});var rr=xe((kh,Ki)=>{"use strict";var qi="stub";function rl(t){let e=2166136261;for(let n=0;n>>0}function sl(t){let e=t>>>0;return function(){e=e+1831565813>>>0;let r=e;return r=Math.imul(r^r>>>15,r|1),r^=r+Math.imul(r^r>>>7,r|61),((r^r>>>14)>>>0)/4294967296}}var nr=class{constructor(e){let n=e&&typeof e.dimensions=="number"?e.dimensions:128;if(!Number.isInteger(n)||n<=0)throw new Error(`StubProvider: dimensions must be a positive integer, got ${n}`);this._dimensions=n}embed(e){let n=typeof e=="string"?e:String(e??""),r=rl(n)||1,s=sl(r),i=new Array(this._dimensions);for(let o=0;o{"use strict";var Gi="text-embedding-3-small",Yi="https://api.openai.com/v1/embeddings",tt=class extends Error{constructor(e){super(e),this.name="AuthError"}},sr=class{constructor(e){if(!e||!e.apiKey)throw new Error("OpenAIProvider: apiKey is required");this._apiKey=e.apiKey,this._model=e.model||Gi,this._dimensions=typeof e.dimensions=="number"?e.dimensions:1536}async embed(e){let n=JSON.stringify({model:this._model,input:typeof e=="string"?e:String(e??""),dimensions:this._dimensions}),r=await this._fetch(n);if(!r.data||r.data.length===0)throw new Error("OpenAI embed returned no data (empty response)");return r.data[0].embedding}async embedBatch(e){if(!Array.isArray(e))throw new Error("OpenAIProvider.embedBatch: texts must be an array");if(e.length===0)return[];if(e.length<=2048){let r=JSON.stringify({model:this._model,input:e,dimensions:this._dimensions}),s=await this._fetch(r);if(!Array.isArray(s.data)||s.data.length!==e.length)throw new Error(`OpenAI embedBatch response length mismatch: requested ${e.length}, received ${s.data?s.data.length:0}`);return[...s.data].sort((o,c)=>o.index-c.index).map(o=>o.embedding)}let n=new Array(e.length);for(let r=0;ra.index-l.index);for(let a=0;a{"use strict";var C=require("fs"),ue=require("path"),Ji=require("os"),{StubProvider:il}=rr(),{OpenAIProvider:ol}=jt(),Xi={similarity_threshold:.8,decay_months:6},ir=["stub","openai"],Zi={openai:"OPENAI_API_KEY"};function Qi(){return ue.join(Ji.homedir(),".config","workflows","config.json")}function eo(t){let e=ue.resolve(t||process.cwd()),n=e;for(;;){if(C.existsSync(ue.join(e,".workflows")))return e;let r=ue.dirname(e);if(r===e)return n;e=r}}function to(t){return ue.join(eo(t),".workflows",".knowledge","config.json")}function no(){return ue.join(Ji.homedir(),".config","workflows","credentials.json")}function or(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read config file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in config file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.knowledge)throw new Error(`Config file at ${t} is missing the required top-level "knowledge" key. Expected format: { "knowledge": { ... } }`);if(typeof n.knowledge!="object"||Array.isArray(n.knowledge))throw new Error(`Config file at ${t}: the "knowledge" key must be an object.`);return n.knowledge}function cr(t){if(!C.existsSync(t))return null;let e;try{e=C.readFileSync(t,"utf8")}catch(r){throw new Error(`Failed to read credentials file at ${t}: ${r.message}`)}let n;try{n=JSON.parse(e)}catch(r){throw new Error(`Invalid JSON in credentials file at ${t}: ${r.message}`)}if(n==null||typeof n!="object"||!n.credentials||typeof n.credentials!="object"||Array.isArray(n.credentials))throw new Error(`Credentials file at ${t} is missing the required top-level "credentials" object. Expected format: { "credentials": { "": { "api_key": "..." } } }`);return n.credentials}function cl(t,e,n){if(!t)throw new Error("writeCredentials: filePath is required");if(!e||typeof e!="string")throw new Error("writeCredentials: provider name is required");let r={};if(C.existsSync(t))try{r=cr(t)||{}}catch{r={}}let s=Object.assign({},r);n==null?delete s[e]:s[e]=Object.assign({},s[e]||{},{api_key:n});let i={credentials:s},o=ue.dirname(t);C.existsSync(o)||C.mkdirSync(o,{recursive:!0});let c=t+".tmp",a=C.openSync(c,"w",384);try{C.writeSync(a,JSON.stringify(i,null,2)+` `)}finally{C.closeSync(a)}C.chmodSync(c,384),C.renameSync(c,t);try{C.chmodSync(t,384)}catch{}}function ro(t,e){if(!t)return null;let n=Zi[t];if(n){let i=process.env[n];if(i&&i.trim()!=="")return i}let r=e&&e.credentialsPath||no(),s;try{s=cr(r)}catch{return null}if(s&&s[t]&&typeof s[t].api_key=="string"){let i=s[t].api_key.trim();if(i!=="")return i}return null}function al(t){let e=t&&t.systemPath||Qi(),n=t&&t.projectPath||to(),r=or(e),s=or(n),i=Object.assign({},Xi);if(r)for(let o of Object.keys(r))r[o]!==void 0&&(r[o]===null?delete i[o]:i[o]=r[o]);if(s)for(let o of Object.keys(s))s[o]!==void 0&&(s[o]===null?delete i[o]:i[o]=s[o]);return i._api_key=ro(i.provider,{credentialsPath:t&&t.credentialsPath}),i}function ll(t){if(!t||typeof t!="object")throw new Error("resolveProvider: config is required");let e=t.provider;if(!e)return null;if(e==="stub"){let n=t.dimensions||void 0;return new il(n!=null?{dimensions:n}:void 0)}if(!ir.includes(e))throw new Error(`Provider "${e}" is not available. Available providers: ${ir.join(", ")}`);return t._api_key&&e==="openai"?new ol({apiKey:t._api_key,model:t.model||void 0,dimensions:t.dimensions||void 0}):null}function ul(t,e){if(!t)throw new Error("writeConfigFile: filePath is required");if(e==null||typeof e!="object"||!e.knowledge)throw new Error('writeConfigFile: payload must be an object with a top-level "knowledge" key');let n=ue.dirname(t);C.existsSync(n)||C.mkdirSync(n,{recursive:!0});let r=t+".tmp";C.writeFileSync(r,JSON.stringify(e,null,2)+` `,"utf8"),C.renameSync(r,t)}so.exports={DEFAULTS:Xi,AVAILABLE_PROVIDERS:ir,PROVIDER_ENV_VARS:Zi,systemConfigPath:Qi,projectConfigPath:to,findProjectRoot:eo,credentialsPath:no,readConfigFile:or,loadConfig:al,loadCredentials:cr,writeCredentials:cl,resolveApiKey:ro,resolveProvider:ll,writeConfigFile:ul}});var Io=xe((_h,So)=>{"use strict";var de=require("fs"),fe=require("path"),dl=require("readline"),$=ar(),lr=tr(),{OpenAIProvider:fl}=jt(),io="text-embedding-3-small",oo=1536,co=1536;function ao(){process.stdin.isTTY||(process.stderr.write(`knowledge setup requires an interactive terminal. Run it directly, not through Claude or a pipe. `),process.exit(1))}function lo(){let t=dl.createInterface({input:process.stdin,output:process.stdout});return t.on("SIGINT",()=>{process.stderr.write(` @@ -100,7 +100,13 @@ Validating via a test embed... `),!await Me(t,"Try a different key?",!0))return process.stdout.write(`No key stored. Falling back to stub mode \u2014 semantic search disabled. Set $${e} in your shell or re-run \`knowledge setup\` once you have a working key. `),"opted-out";continue}return $.writeCredentials(s,"openai",i),process.stdout.write(`API key works. Stored at ${s} (mode 0600). -`),"validated"}}async function wo(t){let e=fe.resolve($.findProjectRoot(),".workflows",".knowledge"),n=fe.join(e,"config.json"),r=fe.join(e,"store.msp"),s=fe.join(e,"metadata.json"),i=mo(e);if(i.fullyInitialised){if(process.stdout.write(` +`),"validated"}}async function wo(t){let e=fe.resolve($.findProjectRoot(),".workflows",".knowledge"),n=fe.join(e,"config.json"),r=fe.join(e,"store.msp"),s=fe.join(e,"metadata.json"),i=mo(e);if(i.storeExists&&!i.metadataExists&&(process.stderr.write(` +Project knowledge base at ${e} is in an inconsistent state: + store.msp is present but metadata.json is missing. + Setup cannot recover this safely \u2014 run \`knowledge rebuild\` (which + re-creates the store from scratch and writes matching metadata) and + then re-run \`knowledge setup\` if needed. +`),process.exit(1)),i.fullyInitialised){if(process.stdout.write(` Project knowledge base already initialised at ${e} `),!await Me(t,"Reinitialise (destroys existing store)?",!1))return process.stdout.write(`Keeping existing project files. `),{created:!1}}else i.partiallyInitialised?(process.stdout.write(` @@ -125,10 +131,10 @@ Knowledge base setup Setup complete. `),i.provider?i.previouslyStub&&process.stdout.write("\nUpgraded from stub mode to a configured provider. The existing store was indexed in keyword-only mode \u2014 run `knowledge rebuild` to re-index with embeddings for full hybrid search.\n"):process.stdout.write(` Stub mode: no embedding provider configured. The knowledge base will run in keyword-only (BM25) mode. Semantic search is disabled until you configure a provider. -`)}So.exports={cmdSetup:pl,requireTTY:ao,createPrompter:lo,ask:qt,askYesNo:Me,askSecret:uo,buildSystemConfigOpenAI:fo,buildSystemConfigStub:ur,buildProjectConfigEmpty:ho,detectSystemConfig:po,detectProjectInit:mo,validateApiKey:Kt,describeValidationError:Gt,ensureOpenAIKey:yo,runSystemConfigStep:go,runProjectInitStep:wo,runInitialIndexStep:xo,KEYWORD_ONLY_DIMENSIONS:co,OPENAI_DEFAULT_MODEL:io,OPENAI_DEFAULT_DIMENSIONS:oo}});var E=require("fs"),z=require("path"),k=tr(),Eo=ji(),{StubProvider:ml}=rr(),{OpenAIProvider:gl,AuthError:mr}=jt(),Y=ar(),vo=Io(),gr=["research","discussion","investigation","specification"],yl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: +`)}So.exports={cmdSetup:pl,requireTTY:ao,createPrompter:lo,ask:qt,askYesNo:Me,askSecret:uo,buildSystemConfigOpenAI:fo,buildSystemConfigStub:ur,buildProjectConfigEmpty:ho,detectSystemConfig:po,detectProjectInit:mo,validateApiKey:Kt,describeValidationError:Gt,ensureOpenAIKey:yo,runSystemConfigStep:go,runProjectInitStep:wo,runInitialIndexStep:xo,KEYWORD_ONLY_DIMENSIONS:co,OPENAI_DEFAULT_MODEL:io,OPENAI_DEFAULT_DIMENSIONS:oo}});var E=require("fs"),z=require("path"),v=tr(),Eo=ji(),{StubProvider:ml}=rr(),{OpenAIProvider:gl,AuthError:mr}=jt(),Y=ar(),ko=Io(),gr=["research","discussion","investigation","specification"],yl=(()=>{let t=z.join(__dirname,"..","..","skills","workflow-manifest","scripts","manifest.cjs"),e=z.join(__dirname,"..","..","workflow-manifest","scripts","manifest.cjs");if(E.existsSync(t))return t;if(E.existsSync(e))return e;throw new Error(`Could not locate manifest.cjs. Tried: ${t} ${e} -This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],wl=5,hr=10,yr=1536,bo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function ko(t){let e=[],n={},r=[],s=0;for(;s [options] +This is an installation problem \u2014 the knowledge CLI cannot work without the manifest CLI.`)})(),rt=[1e3,2e3,4e3],wl=5,hr=10,yr=1536,bo=!1,U=class extends Error{constructor(e){super(e),this.name="UserError"}};function vo(t){let e=[],n={},r=[],s=0;for(;s [options] Commands: index Index a file or all pending artifacts @@ -154,7 +160,7 @@ Re-ranking (query only, additive; repeat for multiple boosts): Other options: --limit Limit number of results --dry-run Preview without making changes - --help, -h Show this usage and exit 0`;function Q(){return z.resolve(Y.findProjectRoot(),".workflows",".knowledge")}function ee(){return z.join(Q(),"store.msp")}function q(){return z.join(Q(),"metadata.json")}function ie(){return z.join(Q(),".lock")}function xl(t){return new Promise(e=>setTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;isetTimeout(e,t))}async function st(t,e){let n=e&&e.maxAttempts||3,r=e&&e.backoff||rt,s;for(let i=0;iSr(s,o,n,r),{maxAttempts:3,backoff:rt});process.stdout.write(`Indexed ${c} chunks from ${s} -`),await Mo(n,r,wl)}async function Sr(t,e,n,r){let s=Sl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=Eo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=Q(),d=ee(),f=q(),h=ie();E.existsSync(u)||E.mkdirSync(u,{recursive:!0});let p,x,g=E.existsSync(d),y=E.existsSync(f);g&&(p=await k.loadStore(d)),y&&(x=k.readMetadata(f),Array.isArray(x.pending)||(x.pending=[]));let I,m;if(x){let D=xr(x,n,r);I=D.mode,m=D.provider}else r?(I="full",m=r):(I="keyword-only",m=null);if(!p){let D=m?m.dimensions():n.dimensions||yr;p=await k.createStore(D)}let w=null;if(I==="full"&&m&&l.length>0){let D=l.map(M=>M.content);w=await m.embedBatch(D)}let S=Date.now(),T=o.confidence||"medium",_=l.map((D,M)=>{let te=String(M+1).padStart(3,"0"),H={id:`${e.workUnit}-${e.phase}-${e.topic}-${te}`,content:D.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:S};return w&&(H.embedding=w[M]),H});return await k.withLock(h,async()=>{if(g?p=await k.loadStore(d):E.existsSync(d)&&(p=await k.loadStore(d)),I==="full"&&E.existsSync(f)){let M=k.readMetadata(f),te=m.dimensions();if(M.provider&&M.dimensions!==te)throw new Error(`Store schema changed during index (concurrent rebuild). Embeddings produced for dims=${te}, store now has dims=${M.dimensions}. Retrying.`)}await k.removeByIdentity(p,{work_unit:e.workUnit,phase:e.phase,topic:e.topic});for(let M of _)await k.insertDocument(p,M);await k.saveStore(p,d);let D=E.existsSync(f)?k.readMetadata(f):null;if(D)D.last_indexed=new Date().toISOString(),Array.isArray(D.pending)||(D.pending=[]),k.writeMetadata(f,D);else{let M={provider:m?n.provider:null,model:m?m.model():null,dimensions:m?m.dimensions():null,last_indexed:new Date().toISOString(),pending:[]};k.writeMetadata(f,M)}}),_.length}function Ne(t){let{execFileSync:e}=require("child_process");return e("node",[yl,...t],{cwd:Y.findProjectRoot(),encoding:"utf8",stdio:["pipe","pipe","pipe"]})}function nt(t,e){if(e&&e.status===2)return;let n=e&&e.stderr?String(e.stderr).trim():e.message;process.stderr.write(`Warning: manifest CLI failed in ${t}: ${n} -`)}async function _o(t,e,n,r){return(await k.searchFulltext(t,{term:"",where:{work_unit:{eq:e},phase:{eq:n},topic:{eq:r}},limit:1})).length>0}function Ir(){let t=[],e;try{let n=Ne(["list"]);e=JSON.parse(n)}catch(n){return nt("discoverArtifacts:list",n),t}if(!Array.isArray(e)||e.length===0)return t;for(let n of e){let r=n.name;if(r&&n.status!=="cancelled")for(let s of gr){let i=n.phases&&n.phases[s];if(!(!i||!i.items)){for(let[o,c]of Object.entries(i.items))if(!(!c||c.status!=="completed"))try{let l=Ne(["resolve",`${r}.${s}.${o}`]).trim();l&&E.existsSync(z.resolve(l))&&t.push({file:l,workUnit:r,phase:s,topic:o})}catch(a){nt(`discoverArtifacts:resolve(${r}.${s}.${o})`,a)}}}}return t}async function Ht(t,e,n){let r=Ir(),s=Q(),i=ee(),o=q();if(E.existsSync(s)||E.mkdirSync(s,{recursive:!0}),E.existsSync(o)){let d=k.readMetadata(o);xr(d,e,n)}let c=null;E.existsSync(i)&&(c=await k.loadStore(i));let a=0,l=0,u=0;for(let d of r){if(c&&await _o(c,d.workUnit,d.phase,d.topic)){u++;continue}try{let f={workUnit:d.workUnit,phase:d.phase,topic:d.topic},h=await st(()=>Sr(d.file,f,e,n),{maxAttempts:3,backoff:rt});process.stdout.write(`Indexing ${d.file}... ${h} chunks -`),a++,l+=h,E.existsSync(i)&&(c=await k.loadStore(i))}catch(f){await Do(d.file,f.message),process.stderr.write(`Failed to index ${d.file} after 3 attempts: ${f.message}. Added to pending queue. +`),await Mo(n,r,wl)}async function Sr(t,e,n,r){let s=Sl(e.workUnit),i=z.join(__dirname,"..","chunking",e.phase+".json");if(!E.existsSync(i))throw new U(`Chunking config not found: ${i}`);let o=JSON.parse(E.readFileSync(i,"utf8")),c=z.resolve(t),a=E.readFileSync(c,"utf8"),l=Eo.chunk(a,o);if(l.length===0)throw new U(`No chunks produced from ${t}. Refusing to index an empty file \u2014 this would silently wipe any existing indexed chunks for this topic. Use \`knowledge remove\` explicitly if that is what you want.`);let u=ee(),d=H(),f=q(),h=ie();E.existsSync(u)||E.mkdirSync(u,{recursive:!0});let p,x,g=E.existsSync(d),y=E.existsSync(f);g&&(p=await v.loadStore(d)),y&&(x=v.readMetadata(f),Array.isArray(x.pending)||(x.pending=[]));let I,m;if(x){let D=xr(x,n,r);I=D.mode,m=D.provider}else r?(I="full",m=r):(I="keyword-only",m=null);if(!p){let D=m?m.dimensions():n.dimensions||yr;p=await v.createStore(D)}let w=null;if(I==="full"&&m&&l.length>0){let D=l.map(M=>M.content);w=await m.embedBatch(D)}let S=Date.now(),T=o.confidence||"medium",_=l.map((D,M)=>{let te=String(M+1).padStart(3,"0"),J={id:`${e.workUnit}-${e.phase}-${e.topic}-${te}`,content:D.content,work_unit:e.workUnit,work_type:s,phase:e.phase,topic:e.topic,confidence:T,source_file:t,timestamp:S};return w&&(J.embedding=w[M]),J});return await v.withLock(h,async()=>{if(g?p=await v.loadStore(d):E.existsSync(d)&&(p=await v.loadStore(d)),I==="full"&&E.existsSync(f)){let M=v.readMetadata(f),te=m.dimensions();if(M.provider&&M.dimensions!==te)throw new Error(`Store schema changed during index (concurrent rebuild). 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(completed > ${o} months ago)`);for(let y of f)g.push(` \u2022 ${y.workUnit}: ${y.count} chunks (${Array.from(y.phases).join(", ")})`);process.stdout.write(g.join(` `)+` -`);return}await k.withLock(s,async()=>{let g=await k.loadStore(r),y=new Set;for(let I of h){let m=`${I.work_unit}|${I.phase}|${I.topic}`;y.has(m)||(y.add(m),await k.removeByIdentity(g,I))}await k.saveStore(g,r)});let x=[];x.push(`Compacted: removed ${p} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)x.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(x.join(` +`);return}await v.withLock(s,async()=>{let g=await v.loadStore(r),y=new Set;for(let I of h){let m=`${I.work_unit}|${I.phase}|${I.topic}`;y.has(m)||(y.add(m),await v.removeByIdentity(g,I))}await v.saveStore(g,r)});let x=[];x.push(`Compacted: removed ${p} chunks from ${f.length} work units (completed > ${o} months ago)`);for(let g of f)x.push(` \u2022 ${g.workUnit}: ${g.count} chunks (${Array.from(g.phases).join(", ")})`);process.stdout.write(x.join(` `)+` `)}async function Po(){let t=process.argv.slice(2);(t.includes("--help")||t.includes("-h")||t[0]==="help")&&(process.stdout.write(dr+` -`),process.exit(0));let{positional:e,flags:n,boosts:r}=ko(t),s=e[0],i=e.slice(1),o=To(n,r);s||(process.stderr.write(dr+` -`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=Y.loadConfig(),a=Y.resolveProvider(c)),s){case"index":await Il(i,o,c,a);break;case"query":await Dl(i,o,c,a);break;case"check":await Ml(i,o,c,a);break;case"status":await Nl();break;case"remove":await Pl(i,o,c,a);break;case"compact":await Cl(i,o,c,a);break;case"rebuild":await Ul(i,o,c,a);break;case"setup":await vo.cmdSetup(Ht,i,o);break;default:process.stderr.write(`Unknown command "${s}". +`),process.exit(0));let{positional:e,flags:n,boosts:r}=vo(t),s=e[0],i=e.slice(1),o=To(n,r);s||(process.stderr.write(dr+` +`),process.exit(1));let c=null,a=null;switch(["index","query","rebuild","compact"].includes(s)&&(c=Y.loadConfig(),a=Y.resolveProvider(c)),s){case"index":await Il(i,o,c,a);break;case"query":await Dl(i,o,c,a);break;case"check":await Ml(i,o,c,a);break;case"status":await Nl();break;case"remove":await Pl(i,o,c,a);break;case"compact":await Cl(i,o,c,a);break;case"rebuild":await Ul(i,o,c,a);break;case"setup":await ko.cmdSetup(Ht,i,o);break;default:process.stderr.write(`Unknown command "${s}". ${dr} -`),process.exit(1)}}module.exports={parseArgs:ko,buildOptions:To,deriveIdentity:wr,resolveProviderState:xr,withRetry:st,UserError:U,AuthError:mr,main:Po,cmdIndexBulk:Ht,StubProvider:ml,OpenAIProvider:gl,store:k,chunker:Eo,config:Y,setup:vo,knowledgeDir:Q,storePath:ee,metadataPath:q,lockFilePath:ie,INDEXED_PHASES:gr,KEYWORD_ONLY_DIMENSIONS:yr};require.main===module&&Po().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` +`),process.exit(1)}}module.exports={parseArgs:vo,buildOptions:To,deriveIdentity:wr,resolveProviderState:xr,withRetry:st,UserError:U,AuthError:mr,main:Po,cmdIndexBulk:Ht,StubProvider:ml,OpenAIProvider:gl,store:v,chunker:Eo,config:Y,setup:ko,knowledgeDir:ee,storePath:H,metadataPath:q,lockFilePath:ie,INDEXED_PHASES:gr,KEYWORD_ONLY_DIMENSIONS:yr};require.main===module&&Po().catch(t=>{t instanceof U?process.stderr.write("Error: "+t.message+` `):process.stderr.write(String(t&&t.stack?t.stack:t)+` `),process.exit(1)}); diff --git a/src/knowledge/index.js b/src/knowledge/index.js index 6e35a71a5..f0ec4729f 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1749,22 +1749,47 @@ async function cmdRemove(_args, options) { // removal queue's drain path may legitimately target a WU that has since // been removed from the registry (e.g. after absorption), and the stored // chunks can still be cleaned up even when the WU entry is gone. + // Registry presence determines whether this is a "named WU" remove (the + // common path) or an "orphan-chunk cleanup" remove (the escape hatch + // when chunks linger after absorption / manual registry mutation). On + // registry-not-found, fall through to a store probe — if the store has + // chunks for this WU we treat it as an orphan cleanup and proceed; if + // not, surface the typo error. + let isOrphanCleanup = false; try { runManifest(['project', 'get', options.workUnit]); } catch (err) { if (err && err.status === 2) { - throw new UserError( - `Work unit "${options.workUnit}" not found in project manifest.\n` + - ' - If the name is a typo: run `knowledge status` to see what is indexed.\n' + - ' - If the work unit was absorbed/deleted but its chunks linger: run `knowledge compact` to drain orphaned chunks via the pending-removal queue.' + const sp = storePath(); + let storeMatch = 0; + if (fs.existsSync(sp)) { + const db = await store.loadStore(sp); + const where = { work_unit: { eq: options.workUnit } }; + if (options.phase) where.phase = { eq: options.phase }; + if (options.topic) where.topic = { eq: options.topic }; + storeMatch = await store.countByFilter(db, where); + } + if (storeMatch === 0) { + throw new UserError( + `Work unit "${options.workUnit}" not found in project manifest, ` + + `and no chunks for it exist in the knowledge base.\n` + + ` Check the name with \`knowledge status\`.` + ); + } + // Stranded chunks. Proceed with removal as an orphan cleanup. + isOrphanCleanup = true; + process.stderr.write( + `Work unit "${options.workUnit}" is not in the project manifest, but ` + + `${storeMatch} chunks remain in the store. Removing as an orphan cleanup.\n` ); + } else { + // Any other manifest error is unexpected — rethrow so the stack shows. + throw err; } - // Any other manifest error is unexpected — rethrow so the stack shows. - throw err; } const sp = storePath(); - const desc = formatRemoveDesc(options); + const desc = formatRemoveDesc(options) + (isOrphanCleanup ? ' (orphan cleanup)' : ''); // --dry-run is observational only: count what would be removed, touch // nothing on disk. Don't drain the pending-removal queue either — that diff --git a/src/knowledge/setup.js b/src/knowledge/setup.js index bd8ac32eb..2f356db91 100644 --- a/src/knowledge/setup.js +++ b/src/knowledge/setup.js @@ -532,6 +532,23 @@ async function runProjectInitStep(rl) { const detected = detectProjectInit(projectDir); + // Reject the dangerous partial-state where the store has chunks but + // metadata is missing. Writing fresh metadata against an existing + // populated store would create a provider/model/dimensions mismatch + // we cannot detect from the store alone — the next `knowledge index` + // would surface a misleading error or, worse, mix incompatible + // vectors. The escape hatch is `knowledge rebuild`. + if (detected.storeExists && !detected.metadataExists) { + process.stderr.write( + `\nProject knowledge base at ${projectDir} is in an inconsistent state:\n` + + ` store.msp is present but metadata.json is missing.\n` + + ` Setup cannot recover this safely — run \`knowledge rebuild\` (which\n` + + ` re-creates the store from scratch and writes matching metadata) and\n` + + ` then re-run \`knowledge setup\` if needed.\n` + ); + process.exit(1); + } + if (detected.fullyInitialised) { process.stdout.write(`\nProject knowledge base already initialised at ${projectDir}\n`); const reinit = await askYesNo(rl, 'Reinitialise (destroys existing store)?', false); diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 875d1a06b..7f0c7b76c 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -1756,6 +1756,79 @@ assert_eq "store still present after rebuild" "true" \ "$([ -f "$TEST_ROOT/.workflows/.knowledge/store.msp" ] && echo true || echo false)" teardown_project +# --- Test 84: Stranded-chunks orphan cleanup --- +# When the registry has no entry for a work unit but the store has +# chunks for it (post-absorption / manual mutation), `knowledge remove +# --work-unit ` should clean the chunks rather than dead-end on +# the typo error. +echo "Test 84: Stranded-chunks orphan cleanup" +setup_project +create_work_unit "absorbed-wu" "feature" "Absorbed" +write_stub_config +create_discussion_file "absorbed-wu" "absorbed-wu" +run_kb index .workflows/absorbed-wu/discussion/absorbed-wu.md >/dev/null 2>&1 +# Simulate post-absorption state: registry entry deleted, chunks linger. +project_manifest="$TEST_ROOT/.workflows/manifest.json" +node -e " +const fs=require('fs'); +const m=JSON.parse(fs.readFileSync('$project_manifest','utf8')); +if (m.work_units) delete m.work_units['absorbed-wu']; +delete m['absorbed-wu']; +fs.writeFileSync('$project_manifest', JSON.stringify(m, null, 2)); +" +exit_code=0 +output=$(run_kb remove --work-unit absorbed-wu 2>&1) || exit_code=$? +assert_eq "orphan cleanup succeeds (exit 0)" "0" "$exit_code" +assert_eq "stderr surfaces orphan-cleanup notice" "true" \ + "$(echo "$output" | grep -q 'orphan cleanup' && echo true || echo false)" +assert_eq "removed chunks reported" "true" \ + "$(echo "$output" | grep -qE 'Removed [1-9].* chunks' && echo true || echo false)" +# Subsequent run must surface the typo error (registry empty, store empty). +exit_code=0 +output=$(run_kb remove --work-unit absorbed-wu 2>&1) || exit_code=$? +assert_eq "subsequent typo case rejects" "true" "$([ "$exit_code" -ne 0 ] && echo true || echo false)" +assert_eq "subsequent error mentions no chunks" "true" \ + "$(echo "$output" | grep -q 'no chunks for it exist' && echo true || echo false)" +teardown_project + +# --- Test 85: Setup aborts on store-without-metadata partial state --- +# The inverse of #7 — when store.msp exists but metadata.json is missing, +# writing fresh metadata against an unknown store would create a +# provider/dimensions mismatch we cannot detect from the store alone. +# Setup must abort with rebuild advice instead. +echo "Test 85: Setup aborts on store-without-metadata" +setup_project +write_stub_config +# Seed a store but not metadata. +create_work_unit "seed-wu" "feature" "Seed" +create_discussion_file "seed-wu" "seed-wu" +run_kb index .workflows/seed-wu/discussion/seed-wu.md >/dev/null 2>&1 +rm "$TEST_ROOT/.workflows/.knowledge/metadata.json" +exit_code=0 +# Pipe input "n" so reconfigure prompt (if reached) declines — but we expect +# abort before that. setup is a TTY wizard, but here we just need the project +# init step to surface the partial-state guard. Run via a wrapper that fakes +# a TTY by redirecting stdin from /dev/tty is overkill; instead invoke the +# wrapper script that runs runProjectInitStep directly via node -e. +# The setup CLI requires a TTY; invoke runProjectInitStep directly so +# the partial-state guard fires without needing the readline wizard. +output=$(cd "$TEST_ROOT" && node -e " +const setup = require('$BUNDLE').setup; +(async () => { + try { + await setup.runProjectInitStep({ question: () => '', close: () => {} }); + console.log('UNEXPECTED_SUCCESS'); + } catch (e) { + console.log('THREW:', e.message); + } +})(); +" 2>&1) || true +assert_eq "setup partial-state guard surfaces inconsistent-state error" "true" \ + "$(echo "$output" | grep -q 'inconsistent state' && echo true || echo false)" +assert_eq "setup partial-state guard mentions knowledge rebuild" "true" \ + "$(echo "$output" | grep -q 'knowledge rebuild' && echo true || echo false)" +teardown_project + # --- Test 83: Subdirectory invocation finds project root --- # Pre-fix, knowledgeDir() / orphan check / manifest reads anchored at # process.cwd(). Running `knowledge status` from a subdirectory of the From 3db7bfc602854c0de921571a54b40493af2415be Mon Sep 17 00:00:00 2001 From: Lee Overy Date: Mon, 27 Apr 2026 14:55:02 +0100 Subject: [PATCH 78/78] fix(knowledge): tighten orphan-cleanup typo error to "no matching chunks" The error message said "no chunks for it exist" but only checks chunks matching the supplied where filter (work_unit + optional phase + topic). If chunks exist for the WU in a different phase/topic the original message would be technically wrong. Use "no matching chunks exist" which is accurate regardless of filter shape. Co-Authored-By: Claude Opus 4.7 (1M context) --- skills/workflow-knowledge/scripts/knowledge.cjs | 2 +- src/knowledge/index.js | 2 +- tests/scripts/test-knowledge-cli.sh | 4 ++-- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/skills/workflow-knowledge/scripts/knowledge.cjs b/skills/workflow-knowledge/scripts/knowledge.cjs index 39e595801..ee9456e54 100644 --- a/skills/workflow-knowledge/scripts/knowledge.cjs +++ b/skills/workflow-knowledge/scripts/knowledge.cjs @@ -215,7 +215,7 @@ Aborted. Rename them back manually to recover. Rollback error: ${f.message} `)}throw d}E.existsSync(l)&&E.unlinkSync(l),E.existsSync(u)&&E.unlinkSync(u)}function Ol(){return new Promise(t=>{let e="",n=!1,r=()=>{if(n)return;n=!0;let o=e.search(/\r|\n/),c=o===-1?e:e.slice(0,o);t(c.trim())};process.stdin.setEncoding("utf8");let s=o=>{e+=o,/\r|\n/.test(e)&&(process.stdin.removeListener("data",s),process.stdin.removeListener("end",i),process.stdin.pause(),r())},i=()=>{process.stdin.removeListener("data",s),r()};process.stdin.on("data",s),process.stdin.once("end",i),process.stdin.resume()})}async function Pl(t,e){e.workUnit||(process.stderr.write(`Usage: knowledge remove --work-unit [--phase

] [--topic ] [--dry-run] `),process.exit(1)),e.topic&&!e.phase&&(process.stderr.write(`Error: --topic requires --phase -`),process.exit(1));let n=!1;try{Ne(["project","get",e.workUnit])}catch(i){if(i&&i.status===2){let o=H(),c=0;if(E.existsSync(o)){let a=await v.loadStore(o),l={work_unit:{eq:e.workUnit}};e.phase&&(l.phase={eq:e.phase}),e.topic&&(l.topic={eq:e.topic}),c=await v.countByFilter(a,l)}if(c===0)throw new U(`Work unit "${e.workUnit}" not found in project manifest, and no chunks for it exist in the knowledge base. +`),process.exit(1));let n=!1;try{Ne(["project","get",e.workUnit])}catch(i){if(i&&i.status===2){let o=H(),c=0;if(E.existsSync(o)){let a=await v.loadStore(o),l={work_unit:{eq:e.workUnit}};e.phase&&(l.phase={eq:e.phase}),e.topic&&(l.topic={eq:e.topic}),c=await v.countByFilter(a,l)}if(c===0)throw new U(`Work unit "${e.workUnit}" not found in project manifest, and no matching chunks exist in the knowledge base. Check the name with \`knowledge status\`.`);n=!0,process.stderr.write(`Work unit "${e.workUnit}" is not in the project manifest, but ${c} chunks remain in the store. Removing as an orphan cleanup. `)}else throw i}let r=H(),s=Rl(e)+(n?" (orphan cleanup)":"");if(e.dryRun){if(!E.existsSync(r)){process.stdout.write(`Would remove 0 chunks for ${s} (store not initialised) `);return}let i=await v.loadStore(r),o={work_unit:{eq:e.workUnit}};e.phase&&(o.phase={eq:e.phase}),e.topic&&(o.topic={eq:e.topic});let c=await v.countByFilter(i,o);process.stdout.write(`Would remove ${c} chunks for ${s} diff --git a/src/knowledge/index.js b/src/knowledge/index.js index f0ec4729f..b1269b757 100644 --- a/src/knowledge/index.js +++ b/src/knowledge/index.js @@ -1772,7 +1772,7 @@ async function cmdRemove(_args, options) { if (storeMatch === 0) { throw new UserError( `Work unit "${options.workUnit}" not found in project manifest, ` + - `and no chunks for it exist in the knowledge base.\n` + + `and no matching chunks exist in the knowledge base.\n` + ` Check the name with \`knowledge status\`.` ); } diff --git a/tests/scripts/test-knowledge-cli.sh b/tests/scripts/test-knowledge-cli.sh index 7f0c7b76c..0508744fe 100644 --- a/tests/scripts/test-knowledge-cli.sh +++ b/tests/scripts/test-knowledge-cli.sh @@ -1787,8 +1787,8 @@ assert_eq "removed chunks reported" "true" \ exit_code=0 output=$(run_kb remove --work-unit absorbed-wu 2>&1) || exit_code=$? assert_eq "subsequent typo case rejects" "true" "$([ "$exit_code" -ne 0 ] && echo true || echo false)" -assert_eq "subsequent error mentions no chunks" "true" \ - "$(echo "$output" | grep -q 'no chunks for it exist' && echo true || echo false)" +assert_eq "subsequent error mentions no matching chunks" "true" \ + "$(echo "$output" | grep -q 'no matching chunks exist' && echo true || echo false)" teardown_project # --- Test 85: Setup aborts on store-without-metadata partial state ---