protnote/environment.yml at main · microsoft/protnote · GitHub

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name: protnote
channels:
  - biobuilds
  - bioconda
  - pytorch
  - huggingface
  - nvidia
  - anaconda
  - conda-forge
  - defaults
dependencies:
  - python=3.10.13 #3.12.4
  - pytorch=2.0.1
  - torchvision=0.15.2
  - pytorch-cuda=11.8
  - pandas=1.5.2
  - joblib=1.1.1
  - transformers=4.32.1
  - torchmetrics=1.2.0
  - torchdata=0.7.1
  - wandb=0.15.11
  - sacremoses=0.0.53
  - pynvml=11.5.0
  - torchmetrics=1.2.0
  - protobuf=3.20.3
  - scipy=1.13.1
  - seaborn=0.13.2
  - scikit-learn=1.3.0
  - matplotlib=3.9.2
  - umap-learn=0.5.4
  - blast=2.12.0
  - openpyxl=3.1.5
  - pip:
    - pip
    - torcheval==0.0.7
    - wget==3.2
    - azureml-mlflow==1.53.0
    - loralib==0.1.2
    - tensorboard==2.15.1
    - obonet==1.0.0
    - blosum==2.0.2
    - biopython==1.84
    - ipykernel==6.29.5
prefix: /anaconda/envs/protnote