tskit2tskit/.github/workflows/python_mod.yml at main · molpopgen/tskit2tskit · GitHub

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on:
  push:
    branches: [main]
  pull_request:

name: Python tests

jobs:
  python-example-module:
    name: Build and run Python example module
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-24.04]
        rust:
          - stable
        python: [ "3.14d" ]
    steps:
      - name: Cancel Previous Runs
        uses: styfle/cancel-workflow-action@0.12.1
        with:
          access_token: ${{ secrets.GITHUB_TOKEN }}

      - uses: actions/checkout@v6.0.0
        with:
          token: ${{ secrets.GITHUB_TOKEN }}
          submodules: recursive
      - uses: dtolnay/rust-toolchain@v1
        with:
          toolchain: ${{ matrix.rust }}
      - uses: Swatinem/rust-cache@v2.8.2
      - name: Install the latest version of uv
        uses: astral-sh/setup-uv@v6
        with:
          activate-environment: true
          version: "latest"
          python-version: ${{ matrix.python }}
      - name: Install package
        run: |
          uv sync --project=python_example/maketrees/tests
      - name: Run Python-side tests
        run: |
          LD_LIBRARY_PATH=$(dirname "$(realpath "$(uv python find)")")/../lib uv run --project=python_example/maketrees/tests python -m pytest python_example/maketrees/tests