Add doublet detection to workflow
This issue will be about the addition of an optional step of doublet detection to the workflow.
Tools
There will be two choices of tool for doublet detection, Scrublet and DoubletDetection. Given the lack of a best-fit-all doublet detection method, we chose two tools that have a decent performance in benchmarking studies (such as Xi and Li, 2021).
Installation
Users do not have to worry about this, but Scrublet and DoubletDetection are both python libraries that can be easily installed via pip. Once the workflow has been stablished, the libraries will be added to the conda environment file.
pip install scrublet
pip install doubletdetection
Add doublet detection to workflow
This issue will be about the addition of an optional step of doublet detection to the workflow.
Tools
There will be two choices of tool for doublet detection, Scrublet and DoubletDetection. Given the lack of a best-fit-all doublet detection method, we chose two tools that have a decent performance in benchmarking studies (such as Xi and Li, 2021).
Installation
Users do not have to worry about this, but Scrublet and DoubletDetection are both python libraries that can be easily installed via pip. Once the workflow has been stablished, the libraries will be added to the conda environment file.