diff --git a/modules/nf-core/clair3/main.nf b/modules/nf-core/clair3/main.nf index a7d91f5c8aa..48c90a44f7f 100644 --- a/modules/nf-core/clair3/main.nf +++ b/modules/nf-core/clair3/main.nf @@ -3,9 +3,7 @@ process CLAIR3 { label 'process_high' conda "${moduleDir}/environment.yml" - container "${ workflow.containerEngine in ['singularity', 'apptainer'] && !task.ext.singularity_pull_docker_container ? - 'docker.io/hkubal/clair3:v2.0.0' : - 'docker.io/hkubal/clair3:v2.0.0' }" + container "docker.io/hkubal/clair3:v2.0.0" input: tuple val(meta), path(bam), path(bai), val(packaged_model), path(user_model), val(platform) diff --git a/modules/nf-core/traitar/pfamget/environment.yml b/modules/nf-core/traitar/pfamget/environment.yml index 2dcfe899936..0b657682e43 100644 --- a/modules/nf-core/traitar/pfamget/environment.yml +++ b/modules/nf-core/traitar/pfamget/environment.yml @@ -1,6 +1,5 @@ --- # yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json -# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json channels: - conda-forge - bioconda diff --git a/modules/nf-core/traitar/pfamget/main.nf b/modules/nf-core/traitar/pfamget/main.nf index babd16a3734..e9b5013b86b 100644 --- a/modules/nf-core/traitar/pfamget/main.nf +++ b/modules/nf-core/traitar/pfamget/main.nf @@ -4,7 +4,7 @@ process TRAITAR_PFAMGET { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine in ['singularity', 'apptainer'] && !task.ext.singularity_pull_docker_container ? - 'community.wave.seqera.io/library/hmmer_prodigal_pandas_parallel_pruned:ccae2eabc2a54ac8' : + 'oras://community.wave.seqera.io/library/hmmer_prodigal_pandas_parallel_pruned:9b929a08d061b63d' : 'community.wave.seqera.io/library/hmmer_prodigal_pandas_parallel_pruned:ccae2eabc2a54ac8' }" output: diff --git a/modules/nf-core/traitar/run/main.nf b/modules/nf-core/traitar/run/main.nf index 7a1825399fa..9e5fc95ff79 100644 --- a/modules/nf-core/traitar/run/main.nf +++ b/modules/nf-core/traitar/run/main.nf @@ -4,7 +4,7 @@ process TRAITAR { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine in ['singularity', 'apptainer'] && !task.ext.singularity_pull_docker_container ? - 'community.wave.seqera.io/library/hmmer_prodigal_pandas_parallel_pruned:ccae2eabc2a54ac8' : + 'oras://community.wave.seqera.io/library/hmmer_prodigal_pandas_parallel_pruned:9b929a08d061b63d' : 'community.wave.seqera.io/library/hmmer_prodigal_pandas_parallel_pruned:ccae2eabc2a54ac8' }" input: