diff --git a/.github/actions/get-shards/action.yml b/.github/actions/get-shards/action.yml index 322a29ee7372..6bb85c9af158 100644 --- a/.github/actions/get-shards/action.yml +++ b/.github/actions/get-shards/action.yml @@ -26,10 +26,10 @@ runs: java-version: "17" - name: Set up nf-test - uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2 + uses: nf-core/setup-nf-test@main # v2 with: version: ${{ env.NFT_VER }} - install-pdiff: true + install-fast-diff: true - name: Get number of shards id: shards diff --git a/.github/actions/nf-test-action/action.yml b/.github/actions/nf-test-action/action.yml index 9fc25c4571f0..950c8afa7219 100644 --- a/.github/actions/nf-test-action/action.yml +++ b/.github/actions/nf-test-action/action.yml @@ -37,10 +37,10 @@ runs: python-version: "3.14" - name: Set up nf-test - uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2 + uses: nf-core/setup-nf-test@main # v2 with: version: "${{ env.NFT_VER }}" - install-pdiff: true + install-fast-diff: true - name: Set up apptainer if: contains(inputs.profile, 'singularity') diff --git a/.github/workflows/update-gpu-snapshot.yml b/.github/workflows/update-gpu-snapshot.yml index b5d079f92e06..989c1517138b 100644 --- a/.github/workflows/update-gpu-snapshot.yml +++ b/.github/workflows/update-gpu-snapshot.yml @@ -71,10 +71,10 @@ jobs: python-version: "3.14" - name: Set up nf-test - uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2 + uses: nf-core/setup-nf-test@main # v2 with: version: "${{ env.NFT_VER }}" - install-pdiff: true + install-fast-diff: true - name: Update gpu snapshot id: update-gpu-snapshot diff --git a/.github/workflows/update-sentieon-snapshot.yml b/.github/workflows/update-sentieon-snapshot.yml index 6132cec0f8fb..5636ca29f44d 100644 --- a/.github/workflows/update-sentieon-snapshot.yml +++ b/.github/workflows/update-sentieon-snapshot.yml @@ -74,10 +74,10 @@ jobs: python-version: "3.14" - name: Set up nf-test - uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2 + uses: nf-core/setup-nf-test@main # v2 with: version: "${{ env.NFT_VER }}" - install-pdiff: true + install-fast-diff: true # Set up secrets - name: Set up Nextflow secrets diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf index e80e8cd8d142..ca03579f3ea0 100644 --- a/modules/nf-core/multiqc/main.nf +++ b/modules/nf-core/multiqc/main.nf @@ -19,7 +19,7 @@ process MULTIQC { when: task.ext.when == null || task.ext.when - +//trigger test script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ? "--filename ${task.ext.prefix}.html" : '' diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap index 7c2f370f3909..a78accebf7c9 100644 --- a/modules/nf-core/multiqc/tests/main.nf.test.snap +++ b/modules/nf-core/multiqc/tests/main.nf.test.snap @@ -175,7 +175,7 @@ [ "MULTIQC", "multiqc", - "1.34" + "1.33" ] ] } @@ -195,7 +195,7 @@ "id": "FASTQC" }, [ - ".stub:md5,d41d8cd98f00b204e9800998ecf8427e" + ".stub:md5,sadd8cd98f00b233e9800998ecf8427e" ] ] ], @@ -205,7 +205,7 @@ "id": "FASTQC" }, [ - ".stub:md5,d41d8cd98f00b204e9800998ecf8427e" + ".stub:md5,d41d8cd9sf0b204e9800998ecf8427e" ] ] ], @@ -214,16 +214,9 @@ { "id": "FASTQC" }, - "multiqc_report.html:md5,d41d8cd98f00b204e9800998ecf8427e" + "multiqc_report.html:md5,d41d8cd98fss00b204e9800998ecf8427e" ] ], - "versions": [ - [ - "MULTIQC", - "multiqc", - "1.34" - ] - ] } ], "timestamp": "2026-02-26T15:14:39.789193051", @@ -419,4 +412,4 @@ "nextflow": "25.10.4" } } -} \ No newline at end of file +}