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Base config

enhancementNew feature or requestNew feature or request

prio1

Status: Open.

#177 In nf-core/spatialaxe;

· heylf opened on Jun 24, 2026

Allow for a bigger test run

enhancementNew feature or requestNew feature or request

prio2

Status: Open.

#176 In nf-core/spatialaxe;

· heylf opened on Jun 24, 2026

feat: add SegTraQ QC module

Status: Open (in progress).

nf-core/spatialaxenumber 129

#129 In nf-core/spatialaxe;

· priyalT opened on Mar 13, 2026

Draft: Add scPortrait feature for issue #26

Status: Open (in progress).

nf-core/spatialaxenumber 132

#132 In nf-core/spatialaxe;

· TPbiocode opened on Mar 13, 2026

Full documentation

enhancementNew feature or requestNew feature or request

prio2

Status: Open.

#175 In nf-core/spatialaxe;

· heylf opened on Jun 24, 2026

Add support for seurat object

enhancementNew feature or requestNew feature or request

prio2

Status: Open.

#174 In nf-core/spatialaxe;

· khersameesh24 opened on Jun 18, 2026

DenoIST

module

prio3

qc

Status: Open.

#128 In nf-core/spatialaxe;

· heylf opened on Mar 10, 2026

module SeqTraq

module

prio3

qc

Status: Open.

#117 In nf-core/spatialaxe;

· heylf opened on Feb 12, 2026

Issues with FICTURE

bugSomething isn't workingSomething isn't working

Status: Open.

#116 In nf-core/spatialaxe;

· heylf opened on Feb 10, 2026

Debugging segger module

bugSomething isn't workingSomething isn't working

Status: Open.

#115 In nf-core/spatialaxe;

· heylf opened on Feb 10, 2026

module scPortrait

lots-of-work

metadata

module

prio3

Status: Open.

#26 In nf-core/spatialaxe;

· heylf opened on Sep 12, 2024

module grandqc

module

prio3

qc

testing

Status: Open.

Enhancement

#60 In nf-core/spatialaxe;

· heylf opened on Mar 21, 2025