From 1e5caa3bf128e49f390105b4d3ed0cf99a19df79 Mon Sep 17 00:00:00 2001 From: Sam Schiano <125507018+Schiano-NOAA@users.noreply.github.com> Date: Tue, 2 Jun 2026 14:59:26 -0400 Subject: [PATCH 1/5] update README to include tinytex-2 bundle download code --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index 701c0444..3f94de34 100644 --- a/README.md +++ b/README.md @@ -26,6 +26,7 @@ First please check to make sure `tinytex` package is installed on your machine. ```r install.packages("pak") pak::pkg_install("rstudio/tinytex") +tinytex::install_tinytex(bundle = "TinyTeX-2") ``` Then install the package using one of the three following ways: From 6cd2ca5549a042e88076f907c97e63f9c40099c4 Mon Sep 17 00:00:00 2001 From: Sam Schiano <125507018+Schiano-NOAA@users.noreply.github.com> Date: Tue, 2 Jun 2026 15:00:05 -0400 Subject: [PATCH 2/5] add quarto dependency v1.6 --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index ba1bdf06..65591c20 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -44,7 +44,7 @@ Suggests: kableExtra, knitr, parallel, - quarto, + quarto (>=1.6.0), r4ss, rmarkdown, snowfall, From 29af29803ba6d5347d78de87754c7bc443bcf5f2 Mon Sep 17 00:00:00 2001 From: Sam Schiano <125507018+Schiano-NOAA@users.noreply.github.com> Date: Tue, 2 Jun 2026 16:17:14 -0400 Subject: [PATCH 3/5] Add space to version # --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 65591c20..d434d475 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -44,7 +44,7 @@ Suggests: kableExtra, knitr, parallel, - quarto (>=1.6.0), + quarto (>= 1.6.0), r4ss, rmarkdown, snowfall, From e6f933edb8884e5e3fdc00da28b5eb5dbfa0c5c8 Mon Sep 17 00:00:00 2001 From: Sam Schiano <125507018+Schiano-NOAA@users.noreply.github.com> Date: Tue, 2 Jun 2026 16:35:43 -0400 Subject: [PATCH 4/5] remove quarto version requirement from description and add information to the README instead: --- DESCRIPTION | 2 +- README.md | 5 ++++- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index d434d475..ba1bdf06 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -44,7 +44,7 @@ Suggests: kableExtra, knitr, parallel, - quarto (>= 1.6.0), + quarto, r4ss, rmarkdown, snowfall, diff --git a/README.md b/README.md index 3f94de34..297c32e4 100644 --- a/README.md +++ b/README.md @@ -51,7 +51,10 @@ remotes::install_github("nmfs-ost/asar") install.packages('asar', repos = c('https://noaa-fisheries-integrated-toolbox.r-universe.dev', 'https://cloud.r-project.org')) ``` -We also recommend to download the [`stockplotr` package](https://github.com/nmfs-ost/stockplotr). Use one of the previous download instructions to also install `stockplotr` by replacing 'asar' with 'stockplotr'. +We also recommend to download the [`stockplotr` package](https://github.com/nmfs-ost/stockplotr) +along with Quarto (v1.6.0 or greater). Use one of the previous download +instructions to also install `stockplotr` by replacing 'asar' with 'stockplotr'. +Install quarto using the above options or base R `install.packages("quarto")`. ## Example From 73be9b18a57cf42f993ad0a51e790428f6c58ea4 Mon Sep 17 00:00:00 2001 From: Sam Schiano <125507018+Schiano-NOAA@users.noreply.github.com> Date: Thu, 4 Jun 2026 08:41:08 -0400 Subject: [PATCH 5/5] Update README.md Co-authored-by: Sophie Breitbart --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 297c32e4..40a19898 100644 --- a/README.md +++ b/README.md @@ -51,7 +51,7 @@ remotes::install_github("nmfs-ost/asar") install.packages('asar', repos = c('https://noaa-fisheries-integrated-toolbox.r-universe.dev', 'https://cloud.r-project.org')) ``` -We also recommend to download the [`stockplotr` package](https://github.com/nmfs-ost/stockplotr) +We also recommend downloading the [`stockplotr` package](https://github.com/nmfs-ost/stockplotr) along with Quarto (v1.6.0 or greater). Use one of the previous download instructions to also install `stockplotr` by replacing 'asar' with 'stockplotr'. Install quarto using the above options or base R `install.packages("quarto")`.