From b70dec82ea03db823500e74ce1def2266f0bd6e0 Mon Sep 17 00:00:00 2001 From: Kevin Yamauchi Date: Tue, 16 Jun 2026 08:44:53 +0200 Subject: [PATCH 1/2] Add ez-zarr library to reader/writer table --- resources/tools/index.md | 1 + 1 file changed, 1 insertion(+) diff --git a/resources/tools/index.md b/resources/tools/index.md index 1c24977e..efa0b5d6 100644 --- a/resources/tools/index.md +++ b/resources/tools/index.md @@ -81,6 +81,7 @@ Want to read or write a Zarr? Use one of these tools. | Bio-Formats | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/ome/bioformats) | A standalone Java library for reading and writing life sciences image file formats. Requires [OMEZarrReader](https://github.com/ome/ZarrReader) | | BioIO | [BioIO logo](https://github.com/bioio-devs/bioio) | Image/Metadata Reading Writing for Microscopy Images in pure Python. Requires [bioio-ome-zarr](https://github.com/bioio-devs/bioio-ome-zarr) (formerly [AICSImageIO](https://github.com/AllenCellModeling/aicsimageio)) | | iohub| [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/czbiohub-sf/iohub) | Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata | +| ez-zarr | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/fmicompbio/ez_zarr) | A Python and R package for reading and plotting OME-Zarr images. | | ngff-zarr | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/thewtex/ngff-zarr) | A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation. | | ngio | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://biovisioncenter.github.io/ngio/stable/) | Python package for bject-based API for opening, exploring, and manipulating OME-Zarr images and high-content screening (HCS) plates | | omero-zarr-pixel-buffer | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/glencoesoftware/omero-zarr-pixel-buffer) | An OMERO server extension for reading OME-Zarr data from local or S3 storage. | From 4faca8811b7eeb72f4983546303e7ed5d08afa84 Mon Sep 17 00:00:00 2001 From: Kevin Yamauchi Date: Tue, 16 Jun 2026 08:49:33 +0200 Subject: [PATCH 2/2] fix alphabetical order --- resources/tools/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/resources/tools/index.md b/resources/tools/index.md index efa0b5d6..a0ae35cb 100644 --- a/resources/tools/index.md +++ b/resources/tools/index.md @@ -80,8 +80,8 @@ Want to read or write a Zarr? Use one of these tools. | bia-zarr | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/BioImage-Archive/bia-zarr) | A Python library for reading, writing, and manipulating OME-Zarr datasets, including thumbnail generation and OME-Zarr type detection. | | Bio-Formats | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/ome/bioformats) | A standalone Java library for reading and writing life sciences image file formats. Requires [OMEZarrReader](https://github.com/ome/ZarrReader) | | BioIO | [BioIO logo](https://github.com/bioio-devs/bioio) | Image/Metadata Reading Writing for Microscopy Images in pure Python. Requires [bioio-ome-zarr](https://github.com/bioio-devs/bioio-ome-zarr) (formerly [AICSImageIO](https://github.com/AllenCellModeling/aicsimageio)) | -| iohub| [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/czbiohub-sf/iohub) | Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata | | ez-zarr | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/fmicompbio/ez_zarr) | A Python and R package for reading and plotting OME-Zarr images. | +| iohub| [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/czbiohub-sf/iohub) | Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata | | ngff-zarr | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/thewtex/ngff-zarr) | A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation. | | ngio | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://biovisioncenter.github.io/ngio/stable/) | Python package for bject-based API for opening, exploring, and manipulating OME-Zarr images and high-content screening (HCS) plates | | omero-zarr-pixel-buffer | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/glencoesoftware/omero-zarr-pixel-buffer) | An OMERO server extension for reading OME-Zarr data from local or S3 storage. |