rhinotypeR/NAMESPACE at main · omicscodeathon/rhinotypeR · GitHub

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# Generated by roxygen2: do not edit by hand

export(SNPeek)
export(alignToRefs)
export(assignTypes)
export(countSNPs)
export(getPrototypeSeqs)
export(overallMeanDistance)
export(pairwiseDistances)
export(plotAA)
export(plotDistances)
export(plotFrequency)
export(plotTree)
importClassesFrom(Biostrings,DNAMultipleAlignment)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,readDNAStringSet)
importFrom(Biostrings,subseq)
importFrom(Biostrings,width)
importFrom(MSA2dist,dnastring2dist)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,heat.colors)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(methods,as)
importFrom(msa,msa)
importFrom(stats,as.dist)
importFrom(stats,hclust)
importFrom(stats,heatmap)