From 3b8c9aff19693b15a20335d711ec3709f5e6d0af Mon Sep 17 00:00:00 2001 From: kara-mela Date: Thu, 4 Jun 2026 14:02:09 +0200 Subject: [PATCH] Delete wrong relationships in IUPAC mapping Motivation Several relationships in the mapping between IUPAC and PaNET were wrong and neet to be deleted. Modification The relationships were deleted. Result Improved correctness of the mapping. --- mappings/mapping_IUPAC.csv | 12 +----------- 1 file changed, 1 insertion(+), 11 deletions(-) diff --git a/mappings/mapping_IUPAC.csv b/mappings/mapping_IUPAC.csv index 6311c41..c75e798 100644 --- a/mappings/mapping_IUPAC.csv +++ b/mappings/mapping_IUPAC.csv @@ -10,7 +10,7 @@ # license: https://creativecommons.org/licenses/by/4.0/,,,,,,,,, # mapping_set_description: Manually curated alignment of the PaNET ontology with the IUPAC goldbook.,,,,,,,,, # Intended to be used for ontological analysis.,,,,,,,,, -# mapping_set_id: mapping_goldbook_PaNET_v1.0,,,,,,,,, +# mapping_set_id: mapping_goldbook_PaNET_v2.0.0,,,,,,,,, # mapping_set_version: '2025-11-13',,,,,,,,, # object_source: https://goldbook.iupac.org/,,,,,,,,, # subject_source: https://pan-ontologies.github.io/PaNET/latest/index-en.html,,,,,,,,, @@ -43,7 +43,6 @@ Panet:PaNET01192,circular dichroism,skos:exactMatch,goldbook:CT06777,circular di Panet:PaNET2020020,coherent diffraction,skos:closeMatch,goldbook:C01131,coherent scattering,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 Panet:PaNET2020014,cold neutron beam,skos:exactMatch,goldbook:C01147,cold neutrons,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 Panet:PaNET01117,photon correlation spectroscopy,skos:broadMatch,goldbook:08323,correlation spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 -Panet:PaNET01117,photon correlation spectroscopy,skos:relatedMatch,goldbook:08324,correlation spectroscopy through long-range coupling,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 Panet:PaNET2011001,neutron,skos:narrowMatch,goldbook:D01581,delayed neutrons,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 Panet:PaNET01090,dichroism,skos:exactMatch,goldbook:DT07357,dichroism,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 Panet:PaNET01125,spectroscopy,skos:narrowMatch,goldbook:D01701,difference absorption spectroscopy,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 @@ -91,8 +90,6 @@ panet:PaNET01233,polymer micro and nanograftin,skos:broadMatch,goldbook:GT07138, panet:PaNET01098,grazing incidence diffraction,skos:relatedMatch,goldbook:08608 ,grazing incidence ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 panet:PaNET01162,grazing incidence small angle x-ray scattering,skos:exactMatch,goldbook:09199,grazing-incidence small-angle X-ray scattering analysis,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 panet:PaNET01059,versus energy loss,skos:narrowMatch,goldbook:R05236 ,high resolution energy loss spectroscopy,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 -panet:PaNET01169,serial synchrotron crystallography,skos:broadMatch,goldbook:14143,high throughput,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,0.9 -panet:PaNET01169,serial synchrotron crystallography,skos:broadMatch,goldbook:08177,high-throughput screening,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,0.9 panet:PaNET01157,in-situ diffraction,skos:narrowMatch,goldbook:I03060,in situ micro-X-ray diffraction,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 panet:PaNET01032,microfocus diffraction,skos:narrowMatch,goldbook:I03060,in situ micro-X-ray diffraction,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 Panet:PaNET2020070,imaging,skos:exactMatch,goldbook:I0294,imaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-28,1 @@ -155,7 +152,6 @@ Panet:PaNET2011001,neutron,skos:relatedMatch,goldbook:08742,neutron energy ,sema panet:PaNET01242,neutron scattering,skos:exactMatch,goldbook:08743,neutron scattering analysis ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 Panet:PaNET2011001,neutron,skos:relatedMatch,goldbook:N04132,neutron temperature ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,0.99 Panet:PaNET01092,emission spectroscopy,skos:narrowMatch,goldbook:08513 ,optical emission spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 -Panet:PaNET01092,emission spectroscopy,skos:narrowMatch,goldbook:08513 ,optical emission spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 panet:PaNET01115,optical spectroscopy,skos:exactMatch,goldbook:O04314,optical spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 Panet:PaNET01177,x-ray emission technique,skos:narrowMatch,goldbook:P04426,particle induced X-ray emission analysis,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 Panet:PaNET01046,gamma-ray emission technique,skos:narrowMatch,goldbook:08748,particle-induced gamma-ray emission analysis,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 @@ -166,8 +162,6 @@ panet:PaNET01055,photo excitation,skos:exactMatch,goldbook:P04613,photoexcitatio panet:PaNET01106,imaging,skos:exactMatch,goldbook:I02944,photoimaging,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 Panet:PaNET01223,lithography,skos:narrowMatch,goldbook:09517,photolithography,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 panet:PaNET01111,luminescence,skos:narrowMatch,goldbook:P04623 ,photoluminescence,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 -panet:PaNET2020030,photon emission,skos:exactMatch,goldbook:P04631,photon emittance,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,0.99 -panet:PaNET2020030,photon emission,skos:exactMatch,goldbook:P04631,photon exitance,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 panet:PaNET01111,luminescence,skos:narrowMatch,goldbook:P04672,piezoluminescence,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 Panet:PaNET01268,mass spectrometry,skos:narrowMatch,goldbook:09190,plasma assisted desorption ionization mass spectrometry,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 panet:PaNET00302,versus polarization,skos:relatedMatch,goldbook:16219,polarisation spectroscopy,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-29,1 @@ -185,10 +179,8 @@ Panet:PaNET01195,raman spectroscopy,skos:exactMatch,goldbook:08669,Raman spectro Panet:PaNET2012000,scattering,skos:narrowMatch,goldbook:R05160 ,Rayleigh scattering ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 Panet:PaNET01268,mass spectrometry,skos:narrowMatch,goldbook:09191,reactive desorption electrospray ionization mass spectrometry,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 panet:PaNET01177,x-ray fluorescence,skos:relatedMatch,goldbook:D01579 ,recombination fluorescence,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 -Panet:PaNET01268,mass spectrometry,skos:narrowMatch,goldbook:R05236 ,reflection electron energy loss spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 panet:PaNET01059,versus energy loss,skos:narrowMatch,goldbook:R05236 ,reflection electron energy loss spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 Panet:PaNET2020018,diffraction,skos:narrowMatch,goldbook:R05238,reflection high energy electron diffraction ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 -panet:PaNET01098,grazing incidence diffraction,skos:narrowMatch,goldbook:08673 ,reflection-absorption at grazing incidence ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 panet:PaNET2012002,absorption,skos:narrowMatch,goldbook:08673 ,reflection-absorption at grazing incidence ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 panet:PaNET2012002,absorption,skos:narrowMatch,goldbook:09201 ,reflection-absorption infrared spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 panet:PaNET01109,infrared spectroscopy,skos:narrowMatch,goldbook:09201 ,reflection-absorption infrared spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-30,1 @@ -223,7 +215,6 @@ Panet:PaNET01223,lithography,skos:narrowMatch,goldbook:09519,soft lithography ,s panet:PaNET01111,luminescence,skos:narrowMatch,goldbook:S05767,sonoluminescence ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 Panet:PaNET01195,raman spectroscopy,skos:narrowMatch,goldbook:08679,spatially offset Raman spectroscopy,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 panet:PaNET2020030,photon emission,skos:narrowMatch,goldbook:P04631,specific photon emission,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 -panet:PaNET2020030,photon emission,skos:narrowMatch,goldbook:S05819,spectral photon exitance ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 panet:PaNET01125,spectroscopy,skos:exactMatch,goldbook:S05848,spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 panet:PaNET01149,x-ray reflectivity,skos:narrowMatch,goldbook:09204 ,specular X-ray reflectrometry ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 panet:PaNET2020038,spin echo,skos:exactMatch,goldbook:08420 ,spin echo ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 @@ -236,7 +227,6 @@ Panet:PaNET01195,raman spectroscopy,skos:narrowMatch,goldbook:08683,Stokes–Ram Panet:PaNET01326,birefringence,skos:narrowMatch,goldbook:S06048,streaming birefringence ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 Panet:PaNET01198,extended x-ray absorption fine structure,skos:narrowMatch,goldbook:09206,surface extended X-ray absorption fine structure spectroscopy ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 Panet:PaNET01121,reflectometry,skos:relatedMatch,goldbook:09577,surface roughness ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 -Panet:PaNET2002000,purpose,skos:relatedMatch,goldbook:09577,surface roughness ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 Panet:PaNET01268,mass spectrometry,skos:narrowMatch,goldbook:09194,surface-assisted laser desorption/ionization mass spectrometry ,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 Panet:PaNET01195,raman spectroscopy,skos:narrowMatch,goldbook:08687,surface-enhanced hyper-Raman spectroscopy,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1 panet:PaNET2012002,absorption,skos:narrowMatch,goldbook:08688,surface-enhanced infrared absorption,semapv:ManualMappingCuration,orcid:0000-0002-5850-4469,Online version 5.0.0,2025-10-31,1