We have deployed the docker on an aws instance and am currently facing an issue with the enumerate and annotate step. We have performed a refresh of the instance and reinstalled today, but the error is persistent.
Using the ensembl ID, we use the default ID: ENSG00000165175 and get:
INFO: GET: http://54.227.22.73:8080/PFREDRestService/service/ScriptUtilities/Orthologs?RunDirectory=042cbe6e-40a0-41b8-aea3-d075918668b6&enseblID=ENSG00000165175&RequestedSpecies=rat&Species=human
Response Code: 200
name,species,length,source
ENST00000614558,homo_sapiens,3758,ENSEMBL
ENST00000457894,homo_sapiens,1812,ENSEMBL
ENST00000378474,homo_sapiens,1889,ENSEMBL
ENST00000336949,homo_sapiens,4814,ENSEMBL
ENSRNOT00000105819,rattus_norvegicus,2860,ENSEMBL
ENSRNOT00000004305,rattus_norvegicus,1891,ENSEMBL
ENSRNOT00000095850,rattus_norvegicus,1355,ENSEMBL
DONE
If we leave all of the settings and selection as default, and click on enumerate and annotate, we can see the error:
Dec 02, 2022 10:54:19 AM org.pfred.rest.RestServiceCaller get
INFO: GET: http://54.227.22.73:8080/PFREDRestService/service/ScriptUtilities/enumerate_first?RunDirectory=042cbe6e-40a0-41b8-aea3-d075918668b6&SecondaryTranscriptIDs=ENST00000614558,ENST00000336949,ENSRNOT00000105819&PrimaryTranscriptID=ENST00000336949&oligoLen=19
Response Code: 400
Dec 02, 2022 10:54:24 AM org.pfred.rest.RestServiceCaller get
INFO: GET: http://54.227.22.73:8080/PFREDRestService/service/ScriptUtilities/enumerate_second?RunDirectory=042cbe6e-40a0-41b8-aea3-d075918668b6
Response Code: 200
java.lang.NullPointerException: Cannot invoke "String.isEmpty()" because "aux" is null
It gives a response code: 400 for enumerate_first, and a 200 for enumerate_second. Any assistance would be greatly appreciated.
We have deployed the docker on an aws instance and am currently facing an issue with the enumerate and annotate step. We have performed a refresh of the instance and reinstalled today, but the error is persistent.
Using the ensembl ID, we use the default ID: ENSG00000165175 and get:
INFO: GET: http://54.227.22.73:8080/PFREDRestService/service/ScriptUtilities/Orthologs?RunDirectory=042cbe6e-40a0-41b8-aea3-d075918668b6&enseblID=ENSG00000165175&RequestedSpecies=rat&Species=human
Response Code: 200
name,species,length,source
ENST00000614558,homo_sapiens,3758,ENSEMBL
ENST00000457894,homo_sapiens,1812,ENSEMBL
ENST00000378474,homo_sapiens,1889,ENSEMBL
ENST00000336949,homo_sapiens,4814,ENSEMBL
ENSRNOT00000105819,rattus_norvegicus,2860,ENSEMBL
ENSRNOT00000004305,rattus_norvegicus,1891,ENSEMBL
ENSRNOT00000095850,rattus_norvegicus,1355,ENSEMBL
DONE
If we leave all of the settings and selection as default, and click on enumerate and annotate, we can see the error:
Dec 02, 2022 10:54:19 AM org.pfred.rest.RestServiceCaller get
INFO: GET: http://54.227.22.73:8080/PFREDRestService/service/ScriptUtilities/enumerate_first?RunDirectory=042cbe6e-40a0-41b8-aea3-d075918668b6&SecondaryTranscriptIDs=ENST00000614558,ENST00000336949,ENSRNOT00000105819&PrimaryTranscriptID=ENST00000336949&oligoLen=19
Response Code: 400
Dec 02, 2022 10:54:24 AM org.pfred.rest.RestServiceCaller get
INFO: GET: http://54.227.22.73:8080/PFREDRestService/service/ScriptUtilities/enumerate_second?RunDirectory=042cbe6e-40a0-41b8-aea3-d075918668b6
Response Code: 200
java.lang.NullPointerException: Cannot invoke "String.isEmpty()" because "aux" is null
It gives a response code: 400 for enumerate_first, and a 200 for enumerate_second. Any assistance would be greatly appreciated.