log4j initialization problems

[thisnickisnotavailable]

Hi!

I was using Phred and was constantly encountering this error. I tried both jar file and compiling version myself.

May you please help with this issue?

[thisnickisnotavailable]

Each time - the connection refused

[alfredyewang]

@thisnickisnotavailable Hi, can you check the full URL in configure service (config button)? You can use https://os.biogen.com

[thisnickisnotavailable]

http://localhost:8080/PFREDService/services/PFREDService

That is one I have

[alfredyewang]

@thisnickisnotavailable Can you change it to https://os.biogen.com/ and try again?

[thisnickisnotavailable]

Still don't work

[alfredyewang]

@thisnickisnotavailable Can you try to replace "http://localhost:8080/PFREDService/services/PFREDService" with "https://os.biogen.com/"?

[thisnickisnotavailable]

@alfredyewang Yes, I did

[thisnickisnotavailable]

@alfredyewang
May I ask, please, ask whether the log4j problem related to the failure to connect to ENSEMBL and enumerate oligos?

[chemist-ian]

@alfredyewang May I ask, please, ask whether the log4j problem related to the failure to connect to ENSEMBL and enumerate oligos?

Currently using https://os.biogen.com/ under the config service shows the same thing as above. I see no ortholog sequence when I click. This is true for all ensembl IDs. Please advise.

[aclark-renagadetx]

@chemist-ian @thisnickisnotavailable did you ever find a solution?