diff --git a/apps/server/src/cli/config.test.ts b/apps/server/src/cli/config.test.ts
index 349dd42a61d..754bdd8a16a 100644
--- a/apps/server/src/cli/config.test.ts
+++ b/apps/server/src/cli/config.test.ts
@@ -125,7 +125,7 @@ it.layer(NodeServices.layer)("cli config resolution", (it) => {
         tailscaleServeEnabled: false,
         tailscaleServePort: 443,
       });
-      assert.equal(resolved.stateDir, join(baseDir, "userdata"));
+      assert.equal(resolved.stateDir, join(baseDir, "userdata-v2"));
     }),
   );
 
@@ -195,7 +195,7 @@ it.layer(NodeServices.layer)("cli config resolution", (it) => {
         tailscaleServeEnabled: true,
         tailscaleServePort: 8443,
       });
-      assert.equal(resolved.dbPath, join(baseDir, "userdata", "state.sqlite"));
+      assert.equal(resolved.dbPath, join(baseDir, "userdata-v2", "state.sqlite"));
     }),
   );
 
diff --git a/apps/server/src/orchestration-v2/testkit/fixtures/tool_call_read_only_on_request/claude_transcript.ndjson b/apps/server/src/orchestration-v2/testkit/fixtures/tool_call_read_only_on_request/claude_transcript.ndjson
index e9b0b981eec..033f08ff9ba 100644
--- a/apps/server/src/orchestration-v2/testkit/fixtures/tool_call_read_only_on_request/claude_transcript.ndjson
+++ b/apps/server/src/orchestration-v2/testkit/fixtures/tool_call_read_only_on_request/claude_transcript.ndjson
@@ -1,5 +1,5 @@
 {"type":"transcript_start","provider":"claudeAgent","protocol":"claude-agent-sdk.query","version":"0.2.111","scenario":"tool_call_read_only_on_request","metadata":{"prompts":["Create or overwrite .codex-probe-write-action.txt with exactly this text: codex app-server approval fixture. Use a local shell command or file edit only, then briefly report what happened. Do not read package metadata, use GitHub, use web, or use MCP."],"model":"claude-sonnet-4-6","nativeSessionId":"2b73817d-f7ab-41a7-a533-31b13b698b0d","queryMode":"streaming","tools":"claude_code","permissionMode":"default","enablePermissionCallback":true,"generatedBy":"recordClaudeAgentSdkReplayTranscript"}}
-{"type":"expect_outbound","label":"query.open","frame":{"type":"query.open","options":{"model":"claude-sonnet-4-6","tools":{"type":"preset","preset":"claude_code"},"permissionMode":"default","sessionId":"2b73817d-f7ab-41a7-a533-31b13b698b0d"}}}
+{"type":"expect_outbound","label":"query.open","frame":{"type":"query.open","options":{"model":"claude-sonnet-4-6","tools":["Read","Glob","Grep"],"permissionMode":"default","allowedTools":["Read","Glob","Grep"],"sessionId":"2b73817d-f7ab-41a7-a533-31b13b698b0d"}}}
 {"type":"expect_outbound","label":"prompt.offer:1","frame":{"type":"prompt.offer","message":{"type":"user","message":{"role":"user","content":"Create or overwrite .codex-probe-write-action.txt with exactly this text: codex app-server approval fixture. Use a local shell command or file edit only, then briefly report what happened. Do not read package metadata, use GitHub, use web, or use MCP."},"parent_tool_use_id":null}}}
 {"type":"emit_inbound","label":"system","frame":{"type":"system","subtype":"hook_started","hook_id":"ae3f0d68-becd-4b08-871b-f857a9ca1f90","hook_name":"SessionStart:startup","hook_event":"SessionStart","uuid":"1d299042-40fc-44af-8459-0a80baa7b7de","session_id":"2b73817d-f7ab-41a7-a533-31b13b698b0d"}}
 {"type":"emit_inbound","label":"system","frame":{"type":"system","subtype":"hook_response","hook_id":"ae3f0d68-becd-4b08-871b-f857a9ca1f90","hook_name":"SessionStart:startup","hook_event":"SessionStart","output":"","stdout":"","stderr":"","exit_code":0,"outcome":"success","uuid":"5c410b64-6b03-49c4-9991-a8e624d0fe12","session_id":"2b73817d-f7ab-41a7-a533-31b13b698b0d"}}
diff --git a/apps/server/src/orchestration-v2/testkit/fixtures/tool_call_restricted_granular/claude_transcript.ndjson b/apps/server/src/orchestration-v2/testkit/fixtures/tool_call_restricted_granular/claude_transcript.ndjson
index 348a77c2bbd..abd246cea4e 100644
--- a/apps/server/src/orchestration-v2/testkit/fixtures/tool_call_restricted_granular/claude_transcript.ndjson
+++ b/apps/server/src/orchestration-v2/testkit/fixtures/tool_call_restricted_granular/claude_transcript.ndjson
@@ -1,5 +1,5 @@
 {"type":"transcript_start","provider":"claudeAgent","protocol":"claude-agent-sdk.query","version":"0.2.111","scenario":"tool_call_restricted_granular","metadata":{"prompts":["Create or overwrite .codex-probe-write-action.txt with exactly this text: codex app-server approval fixture. Use a local shell command or file edit only, then briefly report what happened. Do not read package metadata, use GitHub, use web, or use MCP."],"model":"claude-sonnet-4-6","nativeSessionId":"ffd3df75-f3cf-433d-bb67-1dd1e9db316b","queryMode":"streaming","tools":"claude_code","permissionMode":"default","enablePermissionCallback":true,"generatedBy":"recordClaudeAgentSdkReplayTranscript"}}
-{"type":"expect_outbound","label":"query.open","frame":{"type":"query.open","options":{"model":"claude-sonnet-4-6","tools":{"type":"preset","preset":"claude_code"},"permissionMode":"default","sessionId":"ffd3df75-f3cf-433d-bb67-1dd1e9db316b"}}}
+{"type":"expect_outbound","label":"query.open","frame":{"type":"query.open","options":{"model":"claude-sonnet-4-6","tools":["Read","Glob","Grep"],"permissionMode":"default","sessionId":"ffd3df75-f3cf-433d-bb67-1dd1e9db316b"}}}
 {"type":"expect_outbound","label":"prompt.offer:1","frame":{"type":"prompt.offer","message":{"type":"user","message":{"role":"user","content":"Create or overwrite .codex-probe-write-action.txt with exactly this text: codex app-server approval fixture. Use a local shell command or file edit only, then briefly report what happened. Do not read package metadata, use GitHub, use web, or use MCP."},"parent_tool_use_id":null}}}
 {"type":"emit_inbound","label":"system","frame":{"type":"system","subtype":"hook_started","hook_id":"ba333d12-6a9a-4a5e-9cb5-2d6ce18cd0f8","hook_name":"SessionStart:startup","hook_event":"SessionStart","uuid":"544c0cee-2195-49a9-ab30-088c3d3d5e83","session_id":"ffd3df75-f3cf-433d-bb67-1dd1e9db316b"}}
 {"type":"emit_inbound","label":"system","frame":{"type":"system","subtype":"hook_response","hook_id":"ba333d12-6a9a-4a5e-9cb5-2d6ce18cd0f8","hook_name":"SessionStart:startup","hook_event":"SessionStart","output":"","stdout":"","stderr":"","exit_code":0,"outcome":"success","uuid":"09419836-e234-4231-a15d-927acb1fbdb1","session_id":"ffd3df75-f3cf-433d-bb67-1dd1e9db316b"}}