More documentation

[joaomamede]

Hi,

Do you have more documentation of a notebook with examples to start with?
This seems exactly what we need for our projects. Thanks so much!

[quantumjot]

Hi @joaomamede - this repo is not really being maintained now. We've replaced much of this with other projects. Is there something in particular that you were looking to do?

[joaomamede]

The nucleus/cell detection is working well with other tools.
The combination with baesian tracker and napari would make it much easier to use than writing the whole steps.

My whole setup it there's no ready to use package would be
Nucleus/cell segmentation, then centroids, then trackpy for cell tracks, then napari.

Thanks for your reply

[quantumjot]

@joaomamede - thanks for this. I've made an update for btrack which will enable this. We're just testing it at the moment, but I'll let you know when it's done...

[quantumjot]

I've added a notebook to show how to use the functionality for v0.4.1:
https://github.com/quantumjot/BayesianTracker/blob/master/examples/segmentation_to_btrack_to_napari.ipynb