antropy/.github/workflows/python_tests.yml at master · raphaelvallat/antropy · GitHub

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name: Python tests

on:
  push:
    branches: [master]
    paths: ['src/**', 'tests/**', 'pyproject.toml']
  pull_request:
    branches: [master]
    paths: ['src/**', 'tests/**', 'pyproject.toml']

jobs:
  test-core:
    name: ${{ matrix.platform }} / Python ${{ matrix.python-version }}
    strategy:
      fail-fast: false
      matrix:
        platform: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ["3.10", "3.11", "3.12", "3.13"]

    runs-on: ${{ matrix.platform }}

    env:
      FORCE_COLOR: true

    steps:
      - uses: actions/checkout@v6

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v6
        with:
          python-version: ${{ matrix.python-version }}

      - name: Set up uv
        uses: astral-sh/setup-uv@v7

      - name: Install dependencies
        run: uv pip install --group=test . --system

      - name: Test with pytest
        run: pytest --verbose --no-cov

  test-dependency-combinations:
    name: Dep combo / ${{ matrix.platform }} / ${{ matrix.label }}
    strategy:
      fail-fast: false
      matrix:
        platform: [ubuntu-latest, windows-latest]
        include:
          - label: minimum-versions
            python-version: "3.10"
            numpy: "1.22.4"
            scipy: "1.8.0"
            scikit-learn: "1.2.0"
            numba: "0.57.0"
          - label: old-versions
            python-version: "3.11"
            numpy: "1.25.2"
            scipy: "1.11.4"
            scikit-learn: "1.4.2"
            numba: "0.59.0"
          - label: mid-versions
            python-version: "3.12"
            numpy: "2.0.2"
            scipy: "1.14.1"
            scikit-learn: "1.5.2"
            numba: "0.60.0"

    runs-on: ${{ matrix.platform }}

    env:
      FORCE_COLOR: true

    steps:
      - uses: actions/checkout@v6

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v6
        with:
          python-version: ${{ matrix.python-version }}

      - name: Set up uv
        uses: astral-sh/setup-uv@v7

      - name: Install numpy (pinned)
        if: matrix.numpy != ''
        run: uv pip install "numpy==${{ matrix.numpy }}" --system

      - name: Install numpy (latest)
        if: matrix.numpy == ''
        run: uv pip install numpy --system

      - name: Install pinned dependencies
        if: matrix.label != 'latest-versions'
        run: uv pip install "scipy==${{ matrix.scipy }}" "scikit-learn==${{ matrix.scikit-learn }}" "numba==${{ matrix.numba }}" --system

      - name: Install latest dependencies
        if: matrix.label == 'latest-versions'
        run: uv pip install scipy scikit-learn numba --system

      - name: Install antropy (no deps, already pinned above)
        run: uv pip install . --no-deps --system

      - name: Install test dependencies
        run: uv pip install --group=test --system

      - name: Print installed versions
        run: |
          python -c "import numpy, scipy, sklearn, numba; print(f'numpy={numpy.__version__}, scipy={scipy.__version__}, sklearn={sklearn.__version__}, numba={numba.__version__}')"

      - name: Test with pytest
        run: pytest --verbose --no-cov

  coverage:
    name: Coverage (Ubuntu)
    runs-on: ubuntu-latest

    env:
      FORCE_COLOR: true
      NUMBA_DISABLE_JIT: "1"

    steps:
      - uses: actions/checkout@v6

      - name: Set up Python
        uses: actions/setup-python@v6
        with:
          python-version-file: "pyproject.toml"

      - name: Set up uv
        uses: astral-sh/setup-uv@v7

      - name: Install dependencies
        run: uv pip install --group=test . --system

      - name: Test with pytest and coverage
        run: pytest --cov --cov-report=xml --verbose

      - name: Upload coverage report
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          file: ./coverage.xml
          fail_ci_if_error: true