index.html

---
layout: default
---

<p style="font-size:100%;">This is an old version of the sbgnbricks website, and we continue maintaining it mainly for educational purposes: the 
    <a href="https://sbgnbricks.github.io/pd/">Process Description</a>, 
    <a href="https://sbgnbricks.github.io/af/">Activity Flow</a> and 
    <a href="https://sbgnbricks.github.io/er/">Entity Relationship</a> pages offer examples with explanations, and the 
    <a href="https://sbgnbricks.github.io/dictionary/">SBGN Bricks Dictionary</a> page allows comparing the expressions of biological concepts in the tree SBGN languages.</p>

<p style="font-size:100%;">The <strong>NEW WEBSITE</strong> is located at 
    <a href="http://sbgnbricks.org/">sbgnbricks.org</a> and includes the 
    <a href="http://sbgnbricks.org/BKO/full/explore/bricks/all/">SBGN Bricks Ontology</a> (BKO). This work is described in the recently published paper:</p>

<p style="font-size:100%;">Rougny A, Touré V, Albanese J, Waltemath D, Shirshov D, Sorokin A, Bader GD, Blinov ML, Mazein A. SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks. Brief Bioinform. 2021 Mar 24:bbab049. 
    <a href="https://doi.org/10.1093/bib/bbab049">doi: 10.1093/bib/bbab049</a>. Epub ahead of print. 
    <a href="https://pubmed.ncbi.nlm.nih.gov/33758926/">PMID: 33758926</a>.</p>



<!--<h2>Brick highlight</h2>
<div class="parent">
    <div class="img"><a href="/pd/"><img src="../bricks/catalysis/Catalysis-PD01-IRR-2x2.png"/></a></div>
    <div class="text"><strong>Catalysis: multiple substrates and products.</strong> The enzyme catalyses an irreversible metabolic process which consumes two substrates S1 and S2 and produces two products P1 and P2.</div>
</div>-->