resolve_processing/nextflow.config at master · scOpenLab/resolve_processing · GitHub

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singularity.enabled = true
singularity.autoMounts = true
singularity.cacheDir = "singularity/containers"
singularity.runOptions = "--bind /var/lib:/var/lib"

profiles {

    local {
	        process.executor = "local"
    }

	local_gpu {
		singularity.runOptions = "$singularity.runOptions --nv"
		process {
			withLabel: gpu_user {
				memory = 32.GB
				maxForks = 1
				queue = "gpu"
				time = 72.h
			}
		}
	}

	cluster {
		singularity.runOptions = "$singularity.runOptions --bind /Volumes:/Volumes"
        process.executor= "pbs"
        process.clusterOptions= "-V"
		executor.jobName = { "$task.name" }
    }

	cluster_gpu {
		executor.jobName = { "$task.name" }
		singularity.runOptions = "$singularity.runOptions --nv --bind /Volumes:/Volumes"
		process {
			executor= "pbs"
			clusterOptions= "-V"
			withLabel: gpu_user {
				memory = 32.GB
				maxForks = 1
				queue = "gpu"
				time = 72.h
			}
		}
	}

}