| layout | default |
|---|---|
| title | Bouchet Quick Start |
| permalink | /quick-start/ |
- Go to: https://ood-bouchet.ycrc.yale.edu/ Note: must be on Yale network or Yale VPN
- On to TOP BANNER of the website click on Bouchet Shell Access
# 2.1 Start interactive computing session
salloc -p devel -t 02:00:00 -n 4
# 2.2 Set environment variables
module load foss
module load CMake
module load SciPy-bundle
source /apps/software/2024a/software/imkl/2024.2.0/setvars.sh
# 2.3 Build solver
git clone https://github.com/febiosoftware/FEBio.git
cd ~/FEBio
mkdir -p build
cd build
cmake .. -DUSE_MKL=ON -DMKLROOT=/apps/software/2024a/software/imkl/2024.2.0/mkl/latest -DMKL_OMP_LIB=/apps/software/2024a/software/imkl/2024.2.0/compiler/2024.2/lib/libiomp5.so
make -j4
# 2.4 Build plugin
cd ~
mkdir -p my_project
cd my_project
git clone https://github.com/yale-humphrey-lab/FEMBE_Plugin.git
cd FEMBE_Plugin
g++ -fPIC -shared FEMbeCmm.cpp dllmain.cpp -o FEMbeCmm.so -std=c++11 -I ~/FEBio/ -L ~/FEBio/build/lib -l febiomech -l fecore
# 2.5 Run simulation
~/FEBio/build/bin/febio4 -i thoracic_aorta_hypertension_mbe.feb -import ./FEMbeCmm.soFor more details, see the tutorial pages.