scientific-python · dependabot · Jun 9, 2026 · Jun 9, 2026 · Jun 9, 2026 · Jun 9, 2026
diff --git a/.ruby-version b/.ruby-version
diff --git a/Makefile b/Makefile
@@ -1,4 +1,4 @@
-.PHONY: help prepare cookie cookie_ruby_deps cookie_web_prepare external html serve clean
+.PHONY: help prepare cookie external html serve clean
 .DEFAULT_GOAL := help
 
 # Add help text after each target name starting with '\#\#'
@@ -10,17 +10,11 @@ help:   ## show this help
 prepare:
 	git submodule update --init
 
-cookie_ruby_deps:
-	(cd external-content/cookie && \
-	bundle install)
-
-cookie_web_prepare:
-	(cd external-content/cookie && \
-    ./helpers/fetch_repo_review_app.sh)
-
-cookie: cookie_ruby_deps cookie_web_prepare
-	(cd external-content/cookie && \
-	JEKYLL_ENV=production bundle exec jekyll build --destination ../../public/development --baseurl "/development/")
+cookie:
+	(cd external-content/cookie/docs && \
+	BASE_URL=/development/ npx --yes mystmd build --html)
+	mkdir -p public/development
+	cp -r external-content/cookie/docs/_build/html/. public/development/
 
 external: cookie
 

diff --git a/external-content/cookie b/external-content/cookie
diff --git a/netlify.toml b/netlify.toml
@@ -1,5 +1,6 @@
 [build.environment]
   PYTHON_VERSION = "3.13"
+  NODE_VERSION = "24"
   HUGO_VERSION = "0.141.0"
   DART_SASS_VERSION = "1.83.4"
   DART_SASS_URL = "https://github.com/sass/dart-sass/releases/download/"
@@ -21,3 +22,9 @@
 
   [plugins.inputs]
   skipPatterns = ['https://fonts.gstatic.com', 'https://fonts.googleapis.com', "https://unpkg.com"]
+  # Tolerate two unavoidable artifacts of link-checking the MyST-built
+  # `/development/` site: hyperlink's parser chokes on MyST's bundled
+  # mermaid chunk (`static {}` class blocks), and it reports valid
+  # in-page fragments as failures when the target passes through MyST's
+  # pretty-URL normalization (e.g. /pages/guides/pytest -> .../index.html).
+  todoPatterns = ['fragment-redirect', 'mermaid.core']
+1 −1		.github/workflows/bump.yml
+12 −0		.github/workflows/ci.yml
+25 −0		.github/workflows/reusable-change-detection.yml
+2 −2		.github/workflows/reusable-cookie.yml
+26 −0		.github/workflows/reusable-docs.yml
+3 −3		.github/workflows/reusable-rr-tests.yml
+0 −1		.gitignore
+11 −6		.pre-commit-config.yaml
+11 −12		.readthedocs.yaml
+0 −1		.ruby-version
+92 −0		AGENTS.md
+0 −48		Gemfile
+0 −243		Gemfile.lock
+29 −33		README.md
+0 −57		_config.yml
+0 −1		action.yml
+15 −0		bun.lock
+0 −74		docs/_includes/head.html
+0 −20		docs/_includes/head_custom.html
+0 −25		docs/_includes/interactive_repo_review.html
+0 −7		docs/_includes/toc.html
+13 −13		docs/_partials/pyproject.md
+0 −22		docs/_plugins/details.rb
+0 −19		docs/_plugins/repo_review.rb
+0 −71		docs/_plugins/tabs.rb
+0 −1		docs/_sass/color_schemes/skhep.scss
+0 −155		docs/_sass/custom/custom.scss
+108 −0		docs/assets/css/site.css
+0 −36		docs/assets/js/tabs.js
+9 −0		docs/config/scientific-python.yml
+61 −0		docs/myst.yml
+46 −46		docs/pages/guides/coverage.md
+113 −123		docs/pages/guides/docs.md
+59 −111		docs/pages/guides/gha_basic.md
+57 −87		docs/pages/guides/gha_pure.md
+28 −54		docs/pages/guides/gha_wheels.md
+29 −38		docs/pages/guides/index.md
+15 −21		docs/pages/guides/mypy.md
+57 −70		docs/pages/guides/packaging_classic.md
+107 −123		docs/pages/guides/packaging_compiled.md
+68 −79		docs/pages/guides/packaging_simple.md
+36 −43		docs/pages/guides/pytest.md
+13 −8		docs/pages/guides/repo_review.md
+133 −153		docs/pages/guides/style.md
+33 −39		docs/pages/guides/tasks.md
+36 −45		docs/pages/index.md
+7 −13		docs/pages/patterns/backports.md
+7 −17		docs/pages/patterns/data_files.md
+4 −11		docs/pages/patterns/exports.md
+7 −10		docs/pages/patterns/index.md
+17 −27		docs/pages/principles/design.md
+5 −10		docs/pages/principles/index.md
+4 −10		docs/pages/principles/process.md
+63 −58		docs/pages/principles/testing.md
+29 −40		docs/pages/tutorials/dev-environment.md
+13 −17		docs/pages/tutorials/docs.md
+6 −7		docs/pages/tutorials/index.md
+4 −10		docs/pages/tutorials/module.md
+5 −15		docs/pages/tutorials/packaging.md
+4 −14		docs/pages/tutorials/test.md
+35 −0		docs/rr-role.mjs
+5 −2		helpers/cog_helpers.py
+0 −13		helpers/fetch_repo_review_app.sh
+13 −0		package.json
+11 −0		pyproject.toml
+3 −3		{{cookiecutter.project_name}}/.github/workflows/ci.yml
+2 −2		{{cookiecutter.project_name}}/.github/workflows/{% if cookiecutter.__type=='compiled' %}cd.yml{% endif %}
+1 −1		{{cookiecutter.project_name}}/.pre-commit-config.yaml