From 16614fb2757e58573a0cf0a3e0e5ed81721a89cb Mon Sep 17 00:00:00 2001
From: "scverse-pr-creator[bot]"
 <272303624+scverse-pr-creator[bot]@users.noreply.github.com>
Date: Mon, 8 Jun 2026 08:30:40 +0000
Subject: [PATCH 1/3] Update instance repo from cookiecutter template

---
 .cruft.json       | 4 ++--
 .readthedocs.yaml | 4 ----
 2 files changed, 2 insertions(+), 6 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index 9c53842..a4e059a 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "50f4600a5bf63c821650bd5d5496ea3036b84db5",
+  "commit": "5eac95b4d0a61d76f963cf8dc10ce0a012d9196a",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -36,7 +36,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "50f4600a5bf63c821650bd5d5496ea3036b84db5"
+      "_commit": "5eac95b4d0a61d76f963cf8dc10ce0a012d9196a"
     }
   },
   "directory": null
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index bd0b1f5..3d5b261 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -6,10 +6,6 @@ build:
     python: "3.14"
     nodejs: latest
   jobs:
-    create_environment:
-      - asdf plugin add uv
-      - asdf install uv latest
-      - asdf global uv latest
     build:
       html:
         - uvx hatch run docs:build

From d6de58c9aba3f32aefe45d6b7cfd6c728b99cee8 Mon Sep 17 00:00:00 2001
From: "scverse-pr-creator[bot]"
 <272303624+scverse-pr-creator[bot]@users.noreply.github.com>
Date: Mon, 8 Jun 2026 08:36:30 +0000
Subject: [PATCH 2/3] Update instance repo from cookiecutter template

---
 .cruft.json       | 4 ++--
 .readthedocs.yaml | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index a4e059a..09e55f0 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "5eac95b4d0a61d76f963cf8dc10ce0a012d9196a",
+  "commit": "451d96350d7590f0ff34d325a2fb4d58adca0feb",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -36,7 +36,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "5eac95b4d0a61d76f963cf8dc10ce0a012d9196a"
+      "_commit": "451d96350d7590f0ff34d325a2fb4d58adca0feb"
     }
   },
   "directory": null
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index 3d5b261..4715411 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -8,5 +8,5 @@ build:
   jobs:
     build:
       html:
-        - uvx hatch run docs:build
+        - uv tool run hatch run docs:build
         - mv docs/_build $READTHEDOCS_OUTPUT

From 9d8f4cd4e25f4c5ed94319eecda33def2a68c249 Mon Sep 17 00:00:00 2001
From: "scverse-pr-creator[bot]"
 <272303624+scverse-pr-creator[bot]@users.noreply.github.com>
Date: Mon, 8 Jun 2026 08:40:38 +0000
Subject: [PATCH 3/3] Update instance repo from cookiecutter template

---
 .readthedocs.yaml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index 4715411..2827920 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -6,7 +6,9 @@ build:
     python: "3.14"
     nodejs: latest
   jobs:
+    create_environment:
+      - asdf plugin add uv
     build:
       html:
-        - uv tool run hatch run docs:build
+        - uvx hatch run docs:build
         - mv docs/_build $READTHEDOCS_OUTPUT