diff --git a/scanpy/tools/_dendrogram.py b/scanpy/tools/_dendrogram.py index ccae494748..6c43757ad5 100644 --- a/scanpy/tools/_dendrogram.py +++ b/scanpy/tools/_dendrogram.py @@ -134,7 +134,7 @@ def dendrogram( rep_df.set_index(categorical, inplace=True) categories = rep_df.index.categories else: - gene_names = adata.raw.var_names if use_raw else adata.var_names + gene_names = var_names from ..plotting._anndata import _prepare_dataframe categories, rep_df = _prepare_dataframe(adata, gene_names, groupby, use_raw)