From ceae5f2376423735ea3a6539c9cddd643123702b Mon Sep 17 00:00:00 2001 From: Leo-GG Date: Fri, 24 Nov 2023 17:42:02 +0100 Subject: [PATCH] Update _dendrogram.py allowed the function to use specified var_names --- scanpy/tools/_dendrogram.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scanpy/tools/_dendrogram.py b/scanpy/tools/_dendrogram.py index ccae494748..6c43757ad5 100644 --- a/scanpy/tools/_dendrogram.py +++ b/scanpy/tools/_dendrogram.py @@ -134,7 +134,7 @@ def dendrogram( rep_df.set_index(categorical, inplace=True) categories = rep_df.index.categories else: - gene_names = adata.raw.var_names if use_raw else adata.var_names + gene_names = var_names from ..plotting._anndata import _prepare_dataframe categories, rep_df = _prepare_dataframe(adata, gene_names, groupby, use_raw)