From 5c21e2e3c371c1e529928750af866f6f88a88370 Mon Sep 17 00:00:00 2001
From: VisruthSK <67435125+VisruthSK@users.noreply.github.com>
Date: Sat, 28 Feb 2026 15:03:41 -0800
Subject: [PATCH 1/3] Generated some references

---
 R/model.R                       | 64 +++++++++++++++++++++++++++++++++
 man/model-method-laplace.Rd     | 10 ++++++
 man/model-method-optimize.Rd    | 10 ++++++
 man/model-method-pathfinder.Rd  | 13 +++++++
 man/model-method-sample.Rd      | 15 ++++++++
 man/model-method-sample_mpi.Rd  | 15 ++++++++
 man/model-method-variational.Rd | 13 +++++++
 7 files changed, 140 insertions(+)

diff --git a/R/model.R b/R/model.R
index 2b87f7eac..b42824df2 100644
--- a/R/model.R
+++ b/R/model.R
@@ -1097,6 +1097,19 @@ CmdStanModel$set("public", name = "format", value = format)
 #'
 #' @return A [`CmdStanMCMC`] object.
 #'
+#' @references
+#' * Hoffman, M. D., and Gelman, A. (2014). The No-U-Turn sampler:
+#'   adaptively setting path lengths in Hamiltonian Monte Carlo.
+#'   *Journal of Machine Learning Research*, 15(47), 1593-1623.
+#' * Betancourt, M. (2017). A conceptual introduction to Hamiltonian Monte Carlo.
+#'   arXiv:1701.02434. Appendix A describes Stan's dynamic HMC/NUTS implementation.
+#' * Stan Development Team. Stan Reference Manual (Algorithms section):
+#'   https://mc-stan.org/docs/reference-manual/
+#' * Stan Development Team. Stan documentation:
+#'   https://mc-stan.org/users/documentation/
+#' * Stan Development Team. CmdStan User's Guide:
+#'   https://mc-stan.org/docs/cmdstan-guide/
+#'
 #' @template seealso-docs
 #' @inherit cmdstan_model examples
 #'
@@ -1247,6 +1260,19 @@ CmdStanModel$set("public", name = "sample", value = sample)
 #'
 #' @return A [`CmdStanMCMC`] object.
 #'
+#' @references
+#' * Hoffman, M. D., and Gelman, A. (2014). The No-U-Turn sampler:
+#'   adaptively setting path lengths in Hamiltonian Monte Carlo.
+#'   *Journal of Machine Learning Research*, 15(47), 1593-1623.
+#' * Betancourt, M. (2017). A conceptual introduction to Hamiltonian Monte Carlo.
+#'   arXiv:1701.02434. Appendix A describes Stan's dynamic HMC/NUTS implementation.
+#' * Stan Development Team. Stan Reference Manual (Algorithms section):
+#'   https://mc-stan.org/docs/reference-manual/
+#' * Stan Development Team. Stan documentation:
+#'   https://mc-stan.org/users/documentation/
+#' * Stan Development Team. CmdStan User's Guide:
+#'   https://mc-stan.org/docs/cmdstan-guide/
+#'
 #' @template seealso-docs
 #' @seealso The Stan Math Library's documentation
 #'   ([mc-stan.org/math](https://mc-stan.org/math/)) for more
@@ -1407,6 +1433,14 @@ CmdStanModel$set("public", name = "sample_mpi", value = sample_mpi)
 #'
 #' @return A [`CmdStanMLE`] object.
 #'
+#' @references
+#' * Stan Development Team. Stan Reference Manual (Algorithms section, optimization):
+#'   https://mc-stan.org/docs/reference-manual/
+#' * Stan Development Team. Stan documentation:
+#'   https://mc-stan.org/users/documentation/
+#' * Stan Development Team. CmdStan User's Guide:
+#'   https://mc-stan.org/docs/cmdstan-guide/
+#'
 #' @template seealso-docs
 #' @inherit cmdstan_model examples
 #'
@@ -1529,6 +1563,14 @@ CmdStanModel$set("public", name = "optimize", value = optimize)
 #'
 #' @return A [`CmdStanLaplace`] object.
 #'
+#' @references
+#' * Stan Development Team. Stan Reference Manual (Algorithms section, Laplace approximation):
+#'   https://mc-stan.org/docs/reference-manual/
+#' * Stan Development Team. Stan documentation:
+#'   https://mc-stan.org/users/documentation/
+#' * Stan Development Team. CmdStan User's Guide:
+#'   https://mc-stan.org/docs/cmdstan-guide/
+#'
 #' @template seealso-docs
 #' @examples
 #' \dontrun{
@@ -1694,6 +1736,17 @@ CmdStanModel$set("public", name = "laplace", value = laplace)
 #'
 #' @return A [`CmdStanVB`] object.
 #'
+#' @references
+#' * Kucukelbir, A., Tran, D., Ranganath, R., Gelman, A., and Blei, D. M.
+#'   (2017). Automatic differentiation variational inference.
+#'   *Journal of Machine Learning Research*, 18(14), 1-45.
+#' * Stan Development Team. Stan Reference Manual (Algorithms section, variational inference):
+#'   https://mc-stan.org/docs/reference-manual/
+#' * Stan Development Team. Stan documentation:
+#'   https://mc-stan.org/users/documentation/
+#' * Stan Development Team. CmdStan User's Guide:
+#'   https://mc-stan.org/docs/cmdstan-guide/
+#'
 #' @template seealso-docs
 #' @inherit cmdstan_model examples
 #'
@@ -1834,6 +1887,17 @@ CmdStanModel$set("public", name = "variational", value = variational)
 #'   pathfinder runs in multi-pathfinder.
 #' @return A [`CmdStanPathfinder`] object.
 #'
+#' @references
+#' * Zhang, L., Carpenter, B., Gelman, A., and Vehtari, A. (2022).
+#'   Pathfinder: parallel quasi-Newton variational inference.
+#'   *Journal of Machine Learning Research*, 23(306), 1-49.
+#' * Stan Development Team. Stan Reference Manual (Algorithms section, Pathfinder):
+#'   https://mc-stan.org/docs/reference-manual/
+#' * Stan Development Team. Stan documentation:
+#'   https://mc-stan.org/users/documentation/
+#' * Stan Development Team. CmdStan User's Guide:
+#'   https://mc-stan.org/docs/cmdstan-guide/
+#'
 #' @template seealso-docs
 #' @inherit cmdstan_model examples
 #'
diff --git a/man/model-method-laplace.Rd b/man/model-method-laplace.Rd
index 52d684138..81663a397 100644
--- a/man/model-method-laplace.Rd
+++ b/man/model-method-laplace.Rd
@@ -223,6 +223,16 @@ bayesplot::mcmc_hist(fit_laplace$draws("theta"))
 }
 
 
+}
+\references{
+\itemize{
+\item Stan Development Team. Stan Reference Manual (Algorithms section, Laplace approximation):
+https://mc-stan.org/docs/reference-manual/
+\item Stan Development Team. Stan documentation:
+https://mc-stan.org/users/documentation/
+\item Stan Development Team. CmdStan User's Guide:
+https://mc-stan.org/docs/cmdstan-guide/
+}
 }
 \seealso{
 The CmdStanR website
diff --git a/man/model-method-optimize.Rd b/man/model-method-optimize.Rd
index 6f36bdf15..79a3ca9ea 100644
--- a/man/model-method-optimize.Rd
+++ b/man/model-method-optimize.Rd
@@ -348,6 +348,16 @@ fit_optim_w_init_list <- mod$optimize(
 fit_optim_w_init_list$init()
 }
 
+}
+\references{
+\itemize{
+\item Stan Development Team. Stan Reference Manual (Algorithms section, optimization):
+https://mc-stan.org/docs/reference-manual/
+\item Stan Development Team. Stan documentation:
+https://mc-stan.org/users/documentation/
+\item Stan Development Team. CmdStan User's Guide:
+https://mc-stan.org/docs/cmdstan-guide/
+}
 }
 \seealso{
 The CmdStanR website
diff --git a/man/model-method-pathfinder.Rd b/man/model-method-pathfinder.Rd
index ff7260bbd..11c3d116c 100644
--- a/man/model-method-pathfinder.Rd
+++ b/man/model-method-pathfinder.Rd
@@ -364,6 +364,19 @@ fit_optim_w_init_list <- mod$optimize(
 fit_optim_w_init_list$init()
 }
 
+}
+\references{
+\itemize{
+\item Zhang, L., Carpenter, B., Gelman, A., and Vehtari, A. (2022).
+Pathfinder: parallel quasi-Newton variational inference.
+\emph{Journal of Machine Learning Research}, 23(306), 1-49.
+\item Stan Development Team. Stan Reference Manual (Algorithms section, Pathfinder):
+https://mc-stan.org/docs/reference-manual/
+\item Stan Development Team. Stan documentation:
+https://mc-stan.org/users/documentation/
+\item Stan Development Team. CmdStan User's Guide:
+https://mc-stan.org/docs/cmdstan-guide/
+}
 }
 \seealso{
 The CmdStanR website
diff --git a/man/model-method-sample.Rd b/man/model-method-sample.Rd
index 72fba0480..d8d4edfa8 100644
--- a/man/model-method-sample.Rd
+++ b/man/model-method-sample.Rd
@@ -427,6 +427,21 @@ fit_optim_w_init_list <- mod$optimize(
 fit_optim_w_init_list$init()
 }
 
+}
+\references{
+\itemize{
+\item Hoffman, M. D., and Gelman, A. (2014). The No-U-Turn sampler:
+adaptively setting path lengths in Hamiltonian Monte Carlo.
+\emph{Journal of Machine Learning Research}, 15(47), 1593-1623.
+\item Betancourt, M. (2017). A conceptual introduction to Hamiltonian Monte Carlo.
+arXiv:1701.02434. Appendix A describes Stan's dynamic HMC/NUTS implementation.
+\item Stan Development Team. Stan Reference Manual (Algorithms section):
+https://mc-stan.org/docs/reference-manual/
+\item Stan Development Team. Stan documentation:
+https://mc-stan.org/users/documentation/
+\item Stan Development Team. CmdStan User's Guide:
+https://mc-stan.org/docs/cmdstan-guide/
+}
 }
 \seealso{
 The CmdStanR website
diff --git a/man/model-method-sample_mpi.Rd b/man/model-method-sample_mpi.Rd
index b33464f44..ec3615b21 100644
--- a/man/model-method-sample_mpi.Rd
+++ b/man/model-method-sample_mpi.Rd
@@ -319,6 +319,21 @@ only define the number of processes. To use \code{n_procs} processes specify
 # fit <- mod$sample_mpi(..., mpi_args = list("n" = 4))
 }
 
+}
+\references{
+\itemize{
+\item Hoffman, M. D., and Gelman, A. (2014). The No-U-Turn sampler:
+adaptively setting path lengths in Hamiltonian Monte Carlo.
+\emph{Journal of Machine Learning Research}, 15(47), 1593-1623.
+\item Betancourt, M. (2017). A conceptual introduction to Hamiltonian Monte Carlo.
+arXiv:1701.02434. Appendix A describes Stan's dynamic HMC/NUTS implementation.
+\item Stan Development Team. Stan Reference Manual (Algorithms section):
+https://mc-stan.org/docs/reference-manual/
+\item Stan Development Team. Stan documentation:
+https://mc-stan.org/users/documentation/
+\item Stan Development Team. CmdStan User's Guide:
+https://mc-stan.org/docs/cmdstan-guide/
+}
 }
 \seealso{
 The CmdStanR website
diff --git a/man/model-method-variational.Rd b/man/model-method-variational.Rd
index 4313dcec0..e59c680cb 100644
--- a/man/model-method-variational.Rd
+++ b/man/model-method-variational.Rd
@@ -335,6 +335,19 @@ fit_optim_w_init_list <- mod$optimize(
 fit_optim_w_init_list$init()
 }
 
+}
+\references{
+\itemize{
+\item Kucukelbir, A., Tran, D., Ranganath, R., Gelman, A., and Blei, D. M.
+(2017). Automatic differentiation variational inference.
+\emph{Journal of Machine Learning Research}, 18(14), 1-45.
+\item Stan Development Team. Stan Reference Manual (Algorithms section, variational inference):
+https://mc-stan.org/docs/reference-manual/
+\item Stan Development Team. Stan documentation:
+https://mc-stan.org/users/documentation/
+\item Stan Development Team. CmdStan User's Guide:
+https://mc-stan.org/docs/cmdstan-guide/
+}
 }
 \seealso{
 The CmdStanR website

From ed386f60aa547fec77bfa6089c3309ce578feefe Mon Sep 17 00:00:00 2001
From: VisruthSK <67435125+VisruthSK@users.noreply.github.com>
Date: Sat, 28 Feb 2026 15:22:34 -0800
Subject: [PATCH 2/3] Removed documentation from see also blocks

---
 R/model.R                       |  6 ------
 man/model-method-laplace.Rd     | 10 ----------
 man/model-method-optimize.Rd    | 10 ----------
 man/model-method-pathfinder.Rd  | 10 ----------
 man/model-method-sample.Rd      | 10 ----------
 man/model-method-sample_mpi.Rd  | 10 ----------
 man/model-method-variational.Rd | 10 ----------
 7 files changed, 66 deletions(-)

diff --git a/R/model.R b/R/model.R
index b42824df2..068d3e0ab 100644
--- a/R/model.R
+++ b/R/model.R
@@ -1110,7 +1110,6 @@ CmdStanModel$set("public", name = "format", value = format)
 #' * Stan Development Team. CmdStan User's Guide:
 #'   https://mc-stan.org/docs/cmdstan-guide/
 #'
-#' @template seealso-docs
 #' @inherit cmdstan_model examples
 #'
 sample <- function(data = NULL,
@@ -1273,7 +1272,6 @@ CmdStanModel$set("public", name = "sample", value = sample)
 #' * Stan Development Team. CmdStan User's Guide:
 #'   https://mc-stan.org/docs/cmdstan-guide/
 #'
-#' @template seealso-docs
 #' @seealso The Stan Math Library's documentation
 #'   ([mc-stan.org/math](https://mc-stan.org/math/)) for more
 #'   details on MPI support in Stan.
@@ -1441,7 +1439,6 @@ CmdStanModel$set("public", name = "sample_mpi", value = sample_mpi)
 #' * Stan Development Team. CmdStan User's Guide:
 #'   https://mc-stan.org/docs/cmdstan-guide/
 #'
-#' @template seealso-docs
 #' @inherit cmdstan_model examples
 #'
 optimize <- function(data = NULL,
@@ -1571,7 +1568,6 @@ CmdStanModel$set("public", name = "optimize", value = optimize)
 #' * Stan Development Team. CmdStan User's Guide:
 #'   https://mc-stan.org/docs/cmdstan-guide/
 #'
-#' @template seealso-docs
 #' @examples
 #' \dontrun{
 #' file <- file.path(cmdstan_path(), "examples/bernoulli/bernoulli.stan")
@@ -1747,7 +1743,6 @@ CmdStanModel$set("public", name = "laplace", value = laplace)
 #' * Stan Development Team. CmdStan User's Guide:
 #'   https://mc-stan.org/docs/cmdstan-guide/
 #'
-#' @template seealso-docs
 #' @inherit cmdstan_model examples
 #'
 variational <- function(data = NULL,
@@ -1898,7 +1893,6 @@ CmdStanModel$set("public", name = "variational", value = variational)
 #' * Stan Development Team. CmdStan User's Guide:
 #'   https://mc-stan.org/docs/cmdstan-guide/
 #'
-#' @template seealso-docs
 #' @inherit cmdstan_model examples
 #'
 pathfinder <- function(data = NULL,
diff --git a/man/model-method-laplace.Rd b/man/model-method-laplace.Rd
index 81663a397..7161731ad 100644
--- a/man/model-method-laplace.Rd
+++ b/man/model-method-laplace.Rd
@@ -235,16 +235,6 @@ https://mc-stan.org/docs/cmdstan-guide/
 }
 }
 \seealso{
-The CmdStanR website
-(\href{https://mc-stan.org/cmdstanr/}{mc-stan.org/cmdstanr}) for online
-documentation and tutorials.
-
-The Stan and CmdStan documentation:
-\itemize{
-\item Stan documentation: \href{https://mc-stan.org/users/documentation/}{mc-stan.org/users/documentation}
-\item CmdStan User’s Guide: \href{https://mc-stan.org/docs/cmdstan-guide/}{mc-stan.org/docs/cmdstan-guide}
-}
-
 Other CmdStanModel methods: 
 \code{\link{model-method-check_syntax}},
 \code{\link{model-method-compile}},
diff --git a/man/model-method-optimize.Rd b/man/model-method-optimize.Rd
index 79a3ca9ea..0b9a3c861 100644
--- a/man/model-method-optimize.Rd
+++ b/man/model-method-optimize.Rd
@@ -360,16 +360,6 @@ https://mc-stan.org/docs/cmdstan-guide/
 }
 }
 \seealso{
-The CmdStanR website
-(\href{https://mc-stan.org/cmdstanr/}{mc-stan.org/cmdstanr}) for online
-documentation and tutorials.
-
-The Stan and CmdStan documentation:
-\itemize{
-\item Stan documentation: \href{https://mc-stan.org/users/documentation/}{mc-stan.org/users/documentation}
-\item CmdStan User’s Guide: \href{https://mc-stan.org/docs/cmdstan-guide/}{mc-stan.org/docs/cmdstan-guide}
-}
-
 Other CmdStanModel methods: 
 \code{\link{model-method-check_syntax}},
 \code{\link{model-method-compile}},
diff --git a/man/model-method-pathfinder.Rd b/man/model-method-pathfinder.Rd
index 11c3d116c..a43dda65d 100644
--- a/man/model-method-pathfinder.Rd
+++ b/man/model-method-pathfinder.Rd
@@ -379,16 +379,6 @@ https://mc-stan.org/docs/cmdstan-guide/
 }
 }
 \seealso{
-The CmdStanR website
-(\href{https://mc-stan.org/cmdstanr/}{mc-stan.org/cmdstanr}) for online
-documentation and tutorials.
-
-The Stan and CmdStan documentation:
-\itemize{
-\item Stan documentation: \href{https://mc-stan.org/users/documentation/}{mc-stan.org/users/documentation}
-\item CmdStan User’s Guide: \href{https://mc-stan.org/docs/cmdstan-guide/}{mc-stan.org/docs/cmdstan-guide}
-}
-
 Other CmdStanModel methods: 
 \code{\link{model-method-check_syntax}},
 \code{\link{model-method-compile}},
diff --git a/man/model-method-sample.Rd b/man/model-method-sample.Rd
index d8d4edfa8..53bef2695 100644
--- a/man/model-method-sample.Rd
+++ b/man/model-method-sample.Rd
@@ -444,16 +444,6 @@ https://mc-stan.org/docs/cmdstan-guide/
 }
 }
 \seealso{
-The CmdStanR website
-(\href{https://mc-stan.org/cmdstanr/}{mc-stan.org/cmdstanr}) for online
-documentation and tutorials.
-
-The Stan and CmdStan documentation:
-\itemize{
-\item Stan documentation: \href{https://mc-stan.org/users/documentation/}{mc-stan.org/users/documentation}
-\item CmdStan User’s Guide: \href{https://mc-stan.org/docs/cmdstan-guide/}{mc-stan.org/docs/cmdstan-guide}
-}
-
 Other CmdStanModel methods: 
 \code{\link{model-method-check_syntax}},
 \code{\link{model-method-compile}},
diff --git a/man/model-method-sample_mpi.Rd b/man/model-method-sample_mpi.Rd
index ec3615b21..a6479b2e4 100644
--- a/man/model-method-sample_mpi.Rd
+++ b/man/model-method-sample_mpi.Rd
@@ -336,16 +336,6 @@ https://mc-stan.org/docs/cmdstan-guide/
 }
 }
 \seealso{
-The CmdStanR website
-(\href{https://mc-stan.org/cmdstanr/}{mc-stan.org/cmdstanr}) for online
-documentation and tutorials.
-
-The Stan and CmdStan documentation:
-\itemize{
-\item Stan documentation: \href{https://mc-stan.org/users/documentation/}{mc-stan.org/users/documentation}
-\item CmdStan User’s Guide: \href{https://mc-stan.org/docs/cmdstan-guide/}{mc-stan.org/docs/cmdstan-guide}
-}
-
 The Stan Math Library's documentation
 (\href{https://mc-stan.org/math/}{mc-stan.org/math}) for more
 details on MPI support in Stan.
diff --git a/man/model-method-variational.Rd b/man/model-method-variational.Rd
index e59c680cb..56101213f 100644
--- a/man/model-method-variational.Rd
+++ b/man/model-method-variational.Rd
@@ -350,16 +350,6 @@ https://mc-stan.org/docs/cmdstan-guide/
 }
 }
 \seealso{
-The CmdStanR website
-(\href{https://mc-stan.org/cmdstanr/}{mc-stan.org/cmdstanr}) for online
-documentation and tutorials.
-
-The Stan and CmdStan documentation:
-\itemize{
-\item Stan documentation: \href{https://mc-stan.org/users/documentation/}{mc-stan.org/users/documentation}
-\item CmdStan User’s Guide: \href{https://mc-stan.org/docs/cmdstan-guide/}{mc-stan.org/docs/cmdstan-guide}
-}
-
 Other CmdStanModel methods: 
 \code{\link{model-method-check_syntax}},
 \code{\link{model-method-compile}},

From b13fb078be6de00c6e2511cdd9f8ed68b9d56be7 Mon Sep 17 00:00:00 2001
From: VisruthSK <67435125+VisruthSK@users.noreply.github.com>
Date: Mon, 2 Mar 2026 12:15:44 -0800
Subject: [PATCH 3/3] Generated loo/posterior citations

---
 R/fit.R                   | 22 ++++++++++++++++++++++
 man/fit-method-loo.Rd     | 15 +++++++++++++++
 man/fit-method-summary.Rd | 11 +++++++++++
 3 files changed, 48 insertions(+)

diff --git a/R/fit.R b/R/fit.R
index ca5d6fdba..1c2df276b 100644
--- a/R/fit.R
+++ b/R/fit.R
@@ -768,6 +768,15 @@ lp_approx <- function() {
 #' The `$print()` method returns the fitted model object itself (invisibly),
 #' which is the standard behavior for print methods in \R.
 #'
+#' @references
+#' * Vehtari, A., Gelman, A., Simpson, D., Carpenter, B., and Buerkner, P.-C.
+#'   (2021). Rank-normalization, folding, and localization: An improved R-hat
+#'   for assessing convergence of MCMC (with discussion).
+#'   *Bayesian Analysis*, 16(2), 667-718. doi:10.1214/20-BA1221.
+#' * Vehtari, A. (2021). Comparison of MCMC effective sample size estimators.
+#'   https://avehtari.github.io/rhat_ess/ess_comparison.html
+#'   (for ESS diagnostics such as `ess_bulk` and `ess_tail`).
+#'
 #' @seealso [`CmdStanMCMC`], [`CmdStanMLE`], [`CmdStanLaplace`], [`CmdStanVB`], [`CmdStanGQ`]
 #'
 #' @examples
@@ -1524,6 +1533,19 @@ CmdStanMCMC <- R6::R6Class(
 #' @return The object returned by [loo::loo.array()] or
 #'   [loo::loo_moment_match.default()].
 #'
+#' @references
+#' * Vehtari, A., Gelman, A., and Gabry, J. (2017). Practical Bayesian model
+#'   evaluation using leave-one-out cross-validation and WAIC.
+#'   *Statistics and Computing*, 27(5), 1413-1432.
+#'   doi:10.1007/s11222-016-9696-4.
+#' * Vehtari, A., Simpson, D., Gelman, A., Yao, Y., and Gabry, J. (2024).
+#'   Pareto smoothed importance sampling.
+#'   *Journal of Machine Learning Research*, 25(72), 1-58.
+#' * Paananen, T., Piironen, J., Buerkner, P.-C., and Vehtari, A. (2021).
+#'   Implicitly adaptive importance sampling.
+#'   *Statistics and Computing*, 31, 16. doi:10.1007/s11222-020-09982-2
+#'   (for `moment_match = TRUE`).
+#'
 #' @seealso The \pkg{loo} package website with
 #'   [documentation](https://mc-stan.org/loo/reference/index.html) and
 #'   [vignettes](https://mc-stan.org/loo/articles/).
diff --git a/man/fit-method-loo.Rd b/man/fit-method-loo.Rd
index d2ccb4718..f9dcb7c9a 100644
--- a/man/fit-method-loo.Rd
+++ b/man/fit-method-loo.Rd
@@ -60,6 +60,21 @@ loo_result <- fit$loo(cores = 2)
 print(loo_result)
 }
 
+}
+\references{
+\itemize{
+\item Vehtari, A., Gelman, A., and Gabry, J. (2017). Practical Bayesian model
+evaluation using leave-one-out cross-validation and WAIC.
+\emph{Statistics and Computing}, 27(5), 1413-1432.
+doi:10.1007/s11222-016-9696-4.
+\item Vehtari, A., Simpson, D., Gelman, A., Yao, Y., and Gabry, J. (2024).
+Pareto smoothed importance sampling.
+\emph{Journal of Machine Learning Research}, 25(72), 1-58.
+\item Paananen, T., Piironen, J., Buerkner, P.-C., and Vehtari, A. (2021).
+Implicitly adaptive importance sampling.
+\emph{Statistics and Computing}, 31, 16. doi:10.1007/s11222-020-09982-2
+(for \code{moment_match = TRUE}).
+}
 }
 \seealso{
 The \pkg{loo} package website with
diff --git a/man/fit-method-summary.Rd b/man/fit-method-summary.Rd
index 787feb2ad..20eee6d4f 100644
--- a/man/fit-method-summary.Rd
+++ b/man/fit-method-summary.Rd
@@ -73,6 +73,17 @@ fit$print(c("alpha", "beta"), var2 = ~var(as.vector(.x)))
 
 }
 
+}
+\references{
+\itemize{
+\item Vehtari, A., Gelman, A., Simpson, D., Carpenter, B., and Buerkner, P.-C.
+(2021). Rank-normalization, folding, and localization: An improved R-hat
+for assessing convergence of MCMC (with discussion).
+\emph{Bayesian Analysis}, 16(2), 667-718. doi:10.1214/20-BA1221.
+\item Vehtari, A. (2021). Comparison of MCMC effective sample size estimators.
+https://avehtari.github.io/rhat_ess/ess_comparison.html
+(for ESS diagnostics such as \code{ess_bulk} and \code{ess_tail}).
+}
 }
 \seealso{
 \code{\link{CmdStanMCMC}}, \code{\link{CmdStanMLE}}, \code{\link{CmdStanLaplace}}, \code{\link{CmdStanVB}}, \code{\link{CmdStanGQ}}