BiocCheck Output

[gabrielodom]

This is BiocCheck version 1.20.0. BiocCheck is a work in progress. Output and severity of issues may

• Checking individual file sizes...

  • WARNING: The following files are over 5MB in size:
    '.git/objects/pack/pack-bd68699ebb18c2ec41111422380f37134ec9f577.pack
    vignettes/Bioc2019_workshop.html'

• Checking vignette directory...
  This is a software package

  • NOTE: Potential intermediate files found:
    vignettes/bioc2019_workshop.html

• Checking package NEWS...

  • NOTE: Consider adding a NEWS file, so your package news will be included in Bioconductor
    release announcements.

• Checking unit tests...

  • NOTE: Consider adding unit tests. We strongly encourage them. See
    http://bioconductor.org/developers/how-to/unitTesting-guidelines/.

• Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source...

  • NOTE: Consider shorter lines; 145 lines (11%) are > 80 characters long.
    First 6 lines:
    R/Bioc2019PanCancerStudy.R:3
    R/Bioc2019PanCancerStudy.R:6
    R/data_Bioc2019PanCancerStudy.R:23
    man/BRCARnaseqSE.Rd:6
    man/BRCARnaseqSE.Rd:12
    vignettes/Bioc2019_workshop.Rmd:2

  • NOTE: Consider multiples of 4 spaces for line indents, 163 lines(13%) are not.

Summary:
ERROR count: 0
WARNING count: 1
NOTE count: 6
For detailed information about these checks, see the BiocCheck vignette, available at
https://bioconductor.org/packages/3.9/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#interpreting-bioccheck-output
$error
character(0)

$warning
[1] "The following files are over 5MB in size: '.git/objects/pack/pack-bd68699ebb18c2ec41111422380f37134ec9f577.pack vignettes/Bioc2019_workshop.html'"

$note
[1] "Potential intermediate files found:"
[2] "Consider adding a NEWS file, so your package news will be included in Bioconductor release announcements."
[3] "Consider adding unit tests. We strongly encourage them. See\n http://bioconductor.org/developers/how-to/unitTesting-guidelines/."
[4] "Consider shorter lines; 145 lines (11%) are > 80 characters long."
[5] "Consider multiples of 4 spaces for line indents, 163 lines(13%) are not."
[6] "Cannot determine whether maintainer is subscribed to the bioc-devel mailing list (requires admin\ncredentials). Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel"

[gabrielodom]

Nothing here seems mission critical before submission