diff --git a/.vscode/settings.json b/.vscode/settings.json
new file mode 100644
index 00000000..691a8f68
--- /dev/null
+++ b/.vscode/settings.json
@@ -0,0 +1,3 @@
+{
+    "C_Cpp.errorSquiggles": "Disabled"
+}
\ No newline at end of file
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 15eb8feb..c946a7ae 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -17,11 +17,11 @@ SET (PLATFORM 64)
 #SET (CMAKE_CXX_FLAGS                "-std=c++11 -Wall -O3 -funroll-loops -msse3 -DNAN_CHECKS")
 
 # 1 This line for local
-#SET (CMAKE_CXX_FLAGS                "-std=gnu++17 -Wall -O3 -funroll-loops  -msse3 -fsanitize=address -fno-omit-frame-pointer -D_GLIBCXX_DEBUG")
+#SET (CMAKE_CXX_FLAGS                "-std=c++17 -Wall -O3 -funroll-loops  -msse3 -fsanitize=address -fno-omit-frame-pointer -D_GLIBCXX_DEBUG")
 #SET (CMAKE_CXX_FLAGS                "-std=c++17 -Wall -O3 -funroll-loops  -msse3 -fsanitize=address -fno-omit-frame-pointer -D_GLIBCXX_DEBUG")
 
 # 2 This line for cluster
-#SET (CMAKE_CXX_FLAGS                "-std=gnu++17 -Wall -O3 -funroll-loops  -msse3 -fno-omit-frame-pointer -D_GLIBCXX_DEBUG")
+#SET (CMAKE_CXX_FLAGS                "-std=c++17 -Wall -O3 -funroll-loops  -msse3 -fno-omit-frame-pointer -D_GLIBCXX_DEBUG")
 
 SET (CMAKE_CXX_FLAGS                "-std=c++17 -Wall -O3 -funroll-loops -msse3")
 SET (CMAKE_CXX_FLAGS_DEBUG          "-g")
@@ -95,7 +95,7 @@ ENDIF (COMPILE_CLIENT STREQUAL "YES")
 add_subdirectory(common)
 add_subdirectory(image_tools)
 add_subdirectory(time_series)
-add_subdirectory(word_series)
+add_subdirectory(character_series)
 add_subdirectory(cnn)
 
 add_subdirectory(rnn)
diff --git a/README.md b/README.md
index f9964fb0..258c2a24 100644
--- a/README.md
+++ b/README.md
@@ -27,6 +27,95 @@ You may also want to have graphviz installed so you can generate images of the e
 $ dot -Tpdf genome.gv -o genome.pdf
 ```
 
+# EXAMM: Neural Architectural Search using Parameter Sharing and Augmenting Memory Models
+
+The datasets used for this part of the code are PennChar, PennTreeBank and WikiText. These datasets can be found in the *datasets* directory. These datasets can be used in both mpi as well as multithreaded version.
+
+## Work done this semester : 
+
+### To use Pennchar as dataset and use Simple and ENARC as memory cell
+ 
+
+```
+.//multithreaded/examm_mt_nlp --number_threads 9 --training_filenames ../datasets/pennchar/train_small.txt --test_filenames ../datasets/pennchar/valid_small.txt --word_offset 1 --sequence_length 64 --number_islands 2 --population_size 2 --max_genomes 20 --bp_iterations 2 --use_regression 0 --output_directory "./test_output" --possible_node_types simple ENARC --normalize min_max --std_message_level info --file_message_level info
+
+
+
+```
+
+### To use PennTreeBank Word Prediction as dataset and use Simple and ENARC as memory cell 
+ 
+
+```
+./multithreaded/examm_mt_nlp --number_threads 9 --training_filenames ../datasets/penn/train_small.txt --test_filenames ../datasets/penn/valid_small.txt --word_offset 1 --sequence_length 64 --number_islands 2 --population_size 2 --max_genomes 20 --bp_iterations 2 --use_regression 0 --output_directory "./test_output" --possible_node_types simple ENARC --normalize min_max --std_message_level info --file_message_level info
+
+```
+
+The std_out can be seen in file *main_out* for 20 genomes. The number of genomes can be increase. For ideal results, use 20000 genomes.
+
+
+### To check gradients for ENARC cell 
+
+```
+./rnn_tests/test_enarc_gradients --std_message_level info --file_message_level info --output_directory "./test_output" --input_length 2
+
+```
+
+
+### To check gradients for ENAS_DAG cell 
+
+```
+./rnn_tests/test_enas_dag_gradients --std_message_level info --file_message_level info --output_directory "./test_output" --input_length 2
+
+```
+
+
+### To check gradients for Random DAG cell 
+
+```
+./rnn_tests/test_random_dag_gradients --std_message_level info --file_message_level info --output_directory "./test_output" --input_length 2
+
+```
+
+### To check outputs for Softmax Layer 
+
+```
+./rnn_tests/test_softmax_output --std_message_level info --file_message_level info --output_directory "./test_output"  --timesteps 2 --output_length 6
+
+```
+
+### To check gradients for Softmax Layer 
+
+```
+./rnn_tests/test_softmax_gradient --std_message_level debug --file_message_level debug --output_directory "./test_output" --input_length 4 --timesteps 3 --max_recurrent_depth 10
+```
+
+
+### To use ENARC as Memory Cell on Coal Dataset
+
+
+```
+./multithreaded/examm_mt --number_threads 9 --training_filenames ../datasets/2018_coal/burner_[0-9].csv --test_filenames ../datasets/2018_coal/burner_1[0-1].csv --time_offset 1 --input_parameter_names Conditioner_Inlet_Temp Conditioner_Outlet_Temp Coal_Feeder_Rate Primary_Air_Flow Primary_Air_Split System_Secondary_Air_Flow_Total Secondary_Air_Flow Secondary_Air_Split Tertiary_Air_Split Total_Comb_Air_Flow Supp_Fuel_Flow Main_Flm_Int --output_parameter_names Main_Flm_Int --number_islands 10 --population_size 10 --max_genomes 2000 --bp_iterations 10 --output_directory "./test_output" --possible_node_types simple ENARC --std_message_level INFO --file_message_level INFO
+```
+
+![Results on Coal using ENARC cell](https://github.com/travisdesell/exact/tree/enarc/images/result_enarc.png)
+
+![Results Comparison](https://github.com/travisdesell/exact/tree/enarc/images/result_comp.png)
+
+![Results Comparison](https://github.com/travisdesell/exact/tree/enarc/images/result_comp.png)
+
+## To visualize the ENARC memory cell, it in *images* directory as Node.pdf
+
+### Domain Diagram
+
+![Domain Diagram](https://github.com/travisdesell/exact/tree/enarc/images/domain.png)
+
+### Architecture Diagram
+
+![Architecture Diagram](https://github.com/travisdesell/exact/tree/enarc/images/arch.png)
+
+## Work done before
+
 # EXAMM: Evolutionary eXploration of Augmenting Memory Models and EXALT: Evolutionary eXploration of Augmenting LSTM Topologies
 
 Source code for EXALT/EXAMM can be found in the rnn subdirectory. EXALT has been enhanced with the ability to utilize more recurrent memory cells and has been renamed EXAMM.  The memory cells currently implemented are Delta-RNN, GRU, LSTM, MGU, and UGRNNs. Some example time series data has been provided as part of two publications on EXALT and EXAMM, which also provide implementation details:
diff --git a/character_series/CMakeLists.txt b/character_series/CMakeLists.txt
new file mode 100644
index 00000000..f65a5938
--- /dev/null
+++ b/character_series/CMakeLists.txt
@@ -0,0 +1,3 @@
+add_library(exact_character_series character_series)
+
+target_link_libraries(exact_character_series exact_common pthread)
diff --git a/word_series/word_series.cxx b/character_series/character_series.cxx
similarity index 56%
rename from word_series/word_series.cxx
rename to character_series/character_series.cxx
index 59bd9cc5..7cfbb15b 100644
--- a/word_series/word_series.cxx
+++ b/character_series/character_series.cxx
@@ -39,28 +39,26 @@ using std::regex_replace;
 #include "../common/arguments.hxx"
 #include "../common/log.hxx"
 
-#include "word_series.hxx"
+#include "character_series.hxx"
 
-WordSeries::WordSeries(string _name){
+CharacterSeries::CharacterSeries(string _name) {
 	name = _name;
-
 }
 
-void WordSeries::add_value(double value){
+void CharacterSeries::add_value(double value) {
 	values.push_back(value);
 }
 
-double WordSeries::get_value(int i){
+double CharacterSeries::get_value(int i) {
 	return values[i];
 }
 
-void WordSeries::calculate_statistics() {
+void CharacterSeries::calculate_statistics() {
     min = numeric_limits<double>::max();
     min_change = numeric_limits<double>::max();
     average = 0.0;
     max = -numeric_limits<double>::max();
     max_change = -numeric_limits<double>::max();
-
     std_dev = 0.0;
     variance = 0.0;
 
@@ -69,70 +67,64 @@ void WordSeries::calculate_statistics() {
 
         if (min > values[i]) min = values[i];
         if (max < values[i]) max = values[i];
-
         if (i > 0) {
             double diff = values[i] - values[i-1];
-
             if (diff < min_change) min_change = diff;
             if (diff > max_change) max_change = diff;
         }
     }
-
     average /= values.size();
-
     for (uint32_t i = 0; i < values.size(); i++) {
         double diff = values[i] - average;
         variance += diff * diff;
     }
     variance /= values.size() - 1;
-
     std_dev = sqrt(variance);
 }
 
-void WordSeries::print_statistics() {
-    Log::info("\t%25s stats, min: %lf, avg: %lf, max: %lf, min_change: %lf, max_change: %lf, std_dev: %lf, variance: %lf\n", name.c_str(), min, average, max, min_change, max_change, std_dev, variance);
+void CharacterSeries::print_statistics() {
+    Log::info ("\t%25s stats, min: %lf, avg: %lf, max: %lf, min_change: %lf, max_change: %lf, std_dev: %lf, variance: %lf\n", name.c_str(), min, average, max, min_change, max_change, std_dev, variance);
 }
 
-int WordSeries::get_number_values() const {
+int CharacterSeries::get_number_values() const {
     return values.size();
 }
 
-double WordSeries::get_min() const {
+double CharacterSeries::get_min() const {
     return min;
 }
 
-double WordSeries::get_average() const {
+double CharacterSeries::get_average() const {
     return average;
 }
 
-double WordSeries::get_max() const {
+double CharacterSeries::get_max() const {
     return max;
 }
 
-double WordSeries::get_std_dev() const {
+double CharacterSeries::get_std_dev() const {
     return std_dev;
 }
 
-double WordSeries::get_variance() const {
+double CharacterSeries::get_variance() const {
     return variance;
 }
 
-double WordSeries::get_min_change() const {
+double CharacterSeries::get_min_change() const {
     return min_change;
 }
 
-double WordSeries::get_max_change() const {
+double CharacterSeries::get_max_change() const {
     return max_change;
 }
 
-void WordSeries::normalize_min_max(double min, double max) {
+void CharacterSeries::normalize_min_max(double min, double max) {
     Log::debug("normalizing time series '%s' with min: %lf and max: %lf, series min: %lf, series max: %lf\n", name.c_str(), min, max, this->min, this->max);
 
     for (int i = 0; i < values.size(); i++) {
         if (values[i] < min) {
             Log::warning("normalizing series %s, value[%d] %lf was less than min for normalization: %lf\n", name.c_str(), i, values[i], min);
         }
-
         if (values[i] > max) {
             Log::warning("normalizing series %s, value[%d] %lf was greater than max for normalization: %lf\n", name.c_str(), i, values[i], max);
         }
@@ -142,7 +134,7 @@ void WordSeries::normalize_min_max(double min, double max) {
 }
 
 //divide by the normalized max to make things between -1 and 1
-void WordSeries::normalize_avg_std_dev(double avg, double std_dev, double norm_max) {
+void CharacterSeries::normalize_avg_std_dev(double avg, double std_dev, double norm_max) {
     Log::debug("normalizing time series '%s' with avg: %lf, std_dev: %lf and normalized max: %lf, series avg: %lf, series std_dev: %lf\n", name.c_str(), avg, std_dev, norm_max, this->average, this->std_dev);
 
     for (int i = 0; i < values.size(); i++) {
@@ -150,21 +142,19 @@ void WordSeries::normalize_avg_std_dev(double avg, double std_dev, double norm_m
     }
 }
 
-void WordSeries::cut(int32_t start, int32_t stop) {
+void CharacterSeries::cut(int32_t start, int32_t stop) {
     auto first = values.begin() + start;
     auto last = values.begin() + stop;
     values = vector<double>(first, last);
-
     //update the statistics after the cut
     calculate_statistics();
 }
 
-double WordSeries::get_correlation(const WordSeries *other, int32_t lag) const {
+double CharacterSeries::get_correlation(const CharacterSeries *other, int32_t lag) const {
     double other_average = other->get_average();
-
     int32_t length = fmin(values.size(), other->values.size()) - lag;
-
     double covariance_sum = 0.0;
+
     for (int32_t i = 0; i < length; i++) {
         covariance_sum += (values[i + lag] - average) * (other->values[i] - other_average);
     }
@@ -176,15 +166,14 @@ double WordSeries::get_correlation(const WordSeries *other, int32_t lag) const {
     } else {
         correlation = (covariance_sum / sqrt(variance * other_variance)) / length;
     }
-
     return correlation;
 }
 
-WordSeries::WordSeries() {
+CharacterSeries::CharacterSeries() {
 }
 
-WordSeries* WordSeries::copy() {
-    WordSeries *ws = new WordSeries();
+CharacterSeries* CharacterSeries::copy() {
+    CharacterSeries *ws = new CharacterSeries();
 
     ws->name = name;
     ws->min = min;
@@ -194,243 +183,212 @@ WordSeries* WordSeries::copy() {
     ws->variance = variance;
     ws->min_change = min_change;
     ws->max_change = max_change;
-
     ws->values = values;
-
     return ws;
 }
 
-void WordSeries::copy_values(vector<double> &series) {
+void CharacterSeries::copy_values(vector<double> &series) {
     series = values;
 }
 
-
-void string_split_word(const string &s, char delim, vector<string> &result) {
+void string_split_character(const string &s, char delim, vector<string> &result) {
     stringstream ss;
     ss.str(s);
-
     string item;
     while (getline(ss, item, delim)) {
+        if (item.compare("<") == 0) {
+            while (item.compare(">") != 0) {
+                getline(ss, item, delim);
+            }
+            result.push_back("<unk>");
+            continue;
+        }
         result.push_back(item);
     }
 }
 
-void SentenceSeries::add_word_series(string name) {
-    if (word_series.count(name) == 0) {
-        word_series[name] = new WordSeries(name);
+void SentenceSeries::add_character_series(string name) {
+    if (character_series.count(name) == 0) {
+        character_series[name] = new CharacterSeries(name);
     } else {
         Log::error("ERROR! Trying to add a time series to a time series set with name '%s' which already exists in the set!\n", name.c_str());
     }
 }
 
+SentenceSeries::SentenceSeries(const string _line, const vector<string> & _character_index , const map<string,int> &_vocab) {
+    sentence = _line;
+    character_index = _character_index;
+    vocab = _vocab;  
 
-
-SentenceSeries::SentenceSeries(const string _filename,const vector<string> & _word_index , const map<string,int> &_vocab){
-   filename = _filename;
-   word_index = _word_index;
-   vocab = _vocab;  
-
-    ifstream cs_file(filename.c_str());
-
-    vector<string> file_words;
-
-    for(string line;getline(cs_file,line);){
-        
-        line = regex_replace(line, std::regex("^ +| +$|( ) +"), "$1");
-        string_split_word(line,' ',file_words);
-        file_words.push_back("<eos>");
+    vector<string> file_characters;
+    string_split_character(sentence,' ',file_characters);
+    file_characters.push_back("<eos>");
+    for(int i  = 0; i < character_index.size(); i++) {
+       add_character_series(character_index[i]);
     }
-
-    for(int i  = 0; i < word_index.size();i++){
-       add_word_series(word_index[i]);
-    }
-
-    for (int i = 0; i < file_words.size(); ++i)
-    {
-        int  current_word = vocab[file_words[i]];
-        for (int i = 0; i < word_index.size(); ++i)
-        {
-            if(i != current_word){
-                word_series[word_index[i]]->add_value(0);
-            }
-            else{
-                word_series[word_index[i]]->add_value(1);
+    for (int i = 0; i < file_characters.size(); ++i) {
+        int  current_character = vocab[file_characters[i]];
+        for (int i = 0; i < character_index.size(); ++i) {
+            if(i != current_character) {
+                character_series[character_index[i]]->add_value(0);
+            } else {
+                character_series[character_index[i]]->add_value(1);
             }
         }
     }
+    
+    number_chars = file_characters.size();
 
-
-   
-
-
-   number_rows = file_words.size();
-
-    for (auto series = word_series.begin(); series != word_series.end(); series++) {
+    for (auto series = character_series.begin(); series != character_series.end(); series++) {
         series->second->calculate_statistics();
         if (series->second->get_min_change() == 0 && series->second->get_max_change() == 0) {
             Log::warning("WARNING: unchanging series: '%s'\n", series->first.c_str());
             Log::warning("removing unchanging series: '%s'\n", series->first.c_str());
             series->second->print_statistics();
-            //word_series.erase(series);
+            //character_series.erase(series);
         } else {
             series->second->print_statistics();
         }
-
         int series_rows = series->second->get_number_values();
-
-        if (series_rows != number_rows) {
-            Log::error("ERROR! number of rows for field '%s' (%d) doesn't equal number of rows in first field '%s' (%d)\n", series->first.c_str(), series->second->get_number_values(), word_series.begin()->first.c_str(), word_series.begin()->second->get_number_values());
+        if (series_rows != number_chars) {
+            Log::error("ERROR! number of rows for field '%s' (%d) doesn't equal number of rows in first field '%s' (%d)\n", series->first.c_str(), series->second->get_number_values(), character_series.begin()->first.c_str(), character_series.begin()->second->get_number_values());
         }
-
     }
-
-    Log::info("read time series '%s' with number rows: %d\n", filename.c_str(), number_rows);
-
-
 }
 
-SentenceSeries::~SentenceSeries(){
-    for( std::map<string, WordSeries*>::iterator it=word_series.begin(); it!=word_series.end(); it=word_series.begin())
+SentenceSeries::~SentenceSeries() {
+    for( std::map<string, CharacterSeries*>::iterator it=character_series.begin(); it!=character_series.end(); it=character_series.begin())
     {
-        WordSeries* series = it->second;
-        word_series.erase (it);
+        CharacterSeries* series = it->second;
+        character_series.erase (it);
         delete series;
     }
 }
 
-
-
-
-int SentenceSeries::get_number_rows() const {
-    return number_rows;
+int SentenceSeries::get_number_chars() const {
+    return number_chars;
 }
 
 int SentenceSeries::get_number_columns() const {
-    return word_index.size();
+    return character_index.size();
 }
 
-string SentenceSeries::get_filename() const {
-    return filename;
-}
+// string SentenceSeries::get_filename() const {
+//     return filename;
+// }
 
-vector<string> SentenceSeries::get_word_index() const {
-    return word_index;
+vector<string> SentenceSeries::get_character_index() const {
+    return character_index;
 }
 
-void SentenceSeries::get_series(string word_name, vector<double> &series) {
-    word_series[word_name]->copy_values(series);
+void SentenceSeries::get_series(string character_name, vector<double> &series) {
+    character_series[character_name]->copy_values(series);
 }
 
-double SentenceSeries::get_min(string word) {
-    return word_series[word]->get_min();
+double SentenceSeries::get_min(string character) {
+    return character_series[character]->get_min();
 }
 
-double SentenceSeries::get_average(string word) {
-    return word_series[word]->get_average();
+double SentenceSeries::get_average(string character) {
+    return character_series[character]->get_average();
 }
 
-double SentenceSeries::get_max(string word) {
-    return word_series[word]->get_max();
+double SentenceSeries::get_max(string character) {
+    return character_series[character]->get_max();
 }
 
-double SentenceSeries::get_std_dev(string word) {
-    return word_series[word]->get_std_dev();
+double SentenceSeries::get_std_dev(string character) {
+    return character_series[character]->get_std_dev();
 }
 
-double SentenceSeries::get_variance(string word) {
-    return word_series[word]->get_variance();
+double SentenceSeries::get_variance(string character) {
+    return character_series[character]->get_variance();
 }
 
-double SentenceSeries::get_min_change(string word) {
-    return word_series[word]->get_min_change();
+double SentenceSeries::get_min_change(string character) {
+    return character_series[character]->get_min_change();
 }
 
-double SentenceSeries::get_max_change(string word) {
-    return word_series[word]->get_max_change();
+double SentenceSeries::get_max_change(string character) {
+    return character_series[character]->get_max_change();
 }
 
-void SentenceSeries::normalize_min_max(string word, double min, double max) {
-    word_series[word]->normalize_min_max(min, max);
+void SentenceSeries::normalize_min_max(string character, double min, double max) {
+    character_series[character]->normalize_min_max(min, max);
 }
 
-void SentenceSeries::normalize_avg_std_dev(string word, double avg, double std_dev, double norm_max) {
-    word_series[word]->normalize_avg_std_dev(avg, std_dev, norm_max);
+void SentenceSeries::normalize_avg_std_dev(string character, double avg, double std_dev, double norm_max) {
+    character_series[character]->normalize_avg_std_dev(avg, std_dev, norm_max);
 }
 
-double SentenceSeries::get_correlation(string word1, string word2, int32_t lag) const {
-    const WordSeries *first_series = word_series.at(word1);
-    const WordSeries *second_series = word_series.at(word2);
-
+double SentenceSeries::get_correlation(string character1, string character2, int32_t lag) const {
+    const CharacterSeries *first_series = character_series.at(character1);
+    const CharacterSeries *second_series = character_series.at(character2);
     return first_series->get_correlation(second_series, lag);
 }
 
-void SentenceSeries::export_word_series(vector< vector<double> > &data , int word_offset){
-    
-    cout<<"word_offset:: "<<word_offset<<endl;
+/**
+ *   character_offset < 0 generates input data. Do not use the last <character_offset> values
+ *   character_offset > 0 generates output data. Do not use the first <character_offset> values
+ */
+void SentenceSeries::export_character_series(vector< vector<double> > &data, int32_t character_offset) {
+    Log::debug("clearing data\n");
     data.clear();
-    data.resize(word_index.size(),vector<double> (number_rows - fabs(word_offset),0.0));
 
+    //for some reason fabs is not working right
+    int abs_character_offset = character_offset;
+    if (abs_character_offset < 0) abs_character_offset *= -1;
+    Log::debug("character offset: %d\n", character_offset);
+    Log::debug("abs_character_offset: %d\n", abs_character_offset);
+
+    data.resize(character_index.size(), vector<double>(number_chars - abs_character_offset, 0.0));
+    Log::debug("resized! character_offset = %d\n", character_offset);
 
-    if(word_offset > 0){
-        cout<<"testing"<<endl;
-        for (int i = 0; i < word_index.size(); ++i)
-        {
-            for (int j = word_offset; j < number_rows; ++j)
-            {
-                data[i][j - word_offset] = word_series[word_index[i]]->get_value(j);
+    // output data
+    if(character_offset > 0) { 
+        for (int i = 0; i < character_index.size(); i++) {
+            for (int j = character_offset; j < number_chars; j++) {
+                data[i][j - character_offset] = character_series[character_index[i]]->get_value(j);
             }
-        }    
-    } else if (word_offset < 0){
-        cout<<"training"<<endl; 
-        for (int i = 0; i < word_index.size(); ++i)
-        {
-            for (int j = 0; j < number_rows + word_offset; ++j)
-            {
-                data[i][j] = word_series[word_index[i]]->get_value(j);
+        } 
+    // input data   
+    } else if (character_offset < 0) {
+        for (int i = 0; i < character_index.size(); i++){
+            for (int j = 0; j < number_chars + character_offset; j++) {
+                data[i][j] = character_series[character_index[i]]->get_value(j);
             }
         }
-    } else{
-        for (int i = 0; i < word_index.size(); ++i)
-        {
-            for (int j = 0; j < number_rows; ++j)
-            {
-                data[i][j] = word_series[word_index[i]]->get_value(j);
+    } else {
+        for (int i = 0; i < character_index.size(); i++) {
+            for (int j = 0; j < number_chars; j++) {
+                data[i][j] = character_series[character_index[i]]->get_value(j);
             }
         }
-
     }
-
-
-}
-
-void SentenceSeries::export_word_series(vector< vector<double> > &data ){
-    export_word_series(data , 0);
 }
 
-SentenceSeries::SentenceSeries(){
+SentenceSeries::SentenceSeries() {
 
 }
 
-SentenceSeries* SentenceSeries::copy(){
+SentenceSeries* SentenceSeries::copy() {
     SentenceSeries* ss = new SentenceSeries();
-    ss->number_rows = number_rows;
-    ss->filename = filename;
-    ss->word_index = word_index;
+    ss->number_chars = number_chars;
+    ss->sentence = sentence;
+    ss->character_index = character_index;
     ss->vocab= vocab;
 
-    for (auto series = word_series.begin(); series != word_series.end(); series++) {
-        ss->word_series[series->first] = series->second->copy();
+    for (auto series = character_series.begin(); series != character_series.end(); series++) {
+        ss->character_series[series->first] = series->second->copy();
     }
-
     return ss;
-
 }
 
 void SentenceSeries::select_parameters(const vector<string> &parameter_names) {
-    for (auto series = word_series.begin(); series != word_series.end(); series++) {
+    for (auto series = character_series.begin(); series != character_series.end(); series++) {
         if (std::find(parameter_names.begin(), parameter_names.end(), series->first) == parameter_names.end()) {
             Log::info("removing series: '%s'\n", series->first.c_str());
-            word_series.erase(series->first);
+            character_series.erase(series->first);
         }
     }
 }
@@ -438,28 +396,20 @@ void SentenceSeries::select_parameters(const vector<string> &parameter_names) {
 void SentenceSeries::select_parameters(const vector<string> &input_parameter_names, const vector<string> &output_parameter_names) {
     vector<string> combined_parameters = input_parameter_names;
     combined_parameters.insert(combined_parameters.end(), output_parameter_names.begin(), output_parameter_names.end());
-
     select_parameters(combined_parameters);
 }
 
-
-
-
-
-
 Corpus::Corpus() : normalize_type("none") { 
 
 }
 
-
-Corpus::~Corpus(){
-    for (uint32_t i = 0; i < sent_series.size(); i++) {
-        delete sent_series[i];
+Corpus::~Corpus() {
+    for (uint32_t i = 0; i < sentence_series.size(); i++) {
+        delete sentence_series[i];
     }
 }
 
-
-void merge_parameter_names_word(const vector<string> &input_parameter_names, const vector<string> &output_parameter_names, vector<string> &all_parameter_names) {
+void merge_parameter_names_character(const vector<string> &input_parameter_names, const vector<string> &output_parameter_names, vector<string> &all_parameter_names) {
     all_parameter_names.clear();
 
     for (int32_t i = 0; i < (int32_t)input_parameter_names.size(); i++) {
@@ -475,57 +425,64 @@ void merge_parameter_names_word(const vector<string> &input_parameter_names, con
     }
 }
 
-
-void Corpus::load_word_library(){
-	
-    
-    for (int i = 0; i < training_indexes.size(); ++i)
-    {
-        vector<string> words;
-        string filename = filenames[training_indexes[i]];
+void Corpus::load_character_library() {
+    training_sentence_indexes.clear();
+    test_sentence_indexes.clear();
+    for (int i = 0; i < training_file_indexes.size(); ++i) {
+        vector<string> characters;
+        string filename = filenames[training_file_indexes[i]];
         ifstream cs_file(filename.c_str());
 
-        for(string line;getline(cs_file,line);){
+        for(string line; getline(cs_file,line); ) {
             line = regex_replace(line, std::regex("^ +| +$|( ) +"), "$1");
-            
-            string_split_word(line,' ',words);
-            words.push_back("<eos>");
+            string_split_character(line,' ',characters);
+            characters.push_back("<eos>");
         }
 
-        set<string> word_index_set(words.begin(), words.end());
-
-        for (set<string>::iterator i = word_index_set.begin(); i != word_index_set.end(); ++i)
-        {
-            word_index.push_back(*i);
-            vocab[*i] = vocab.size();
-
+        int current = 0;
+        set<string> character_index_set(characters.begin(), characters.end());
+        Log::info("there are %d different inputs in training file! \n", character_index_set.size());
+        for (set<string>::iterator i = character_index_set.begin(); i != character_index_set.end(); ++i) {
+            character_index.push_back(*i);
+            vocab[*i] = current;
+            Log::info("charator %d is %s \n", current, (*i).c_str());
+            current ++;
         }
-
     }
 
+    input_parameter_names = character_index;
+    output_parameter_names = character_index;
+    all_parameter_names = character_index;
 
-    input_parameter_names = word_index;
-    output_parameter_names = word_index;
-    all_parameter_names = word_index;
-
-
-    for (uint32_t i = 0; i < filenames.size(); i++) {
-        Log::debug("\t%s\n", filenames[i].c_str());
-
-        SentenceSeries *ss = new SentenceSeries(filenames[i], word_index,vocab);
-        sent_series.push_back( ss );
-
+    int current = 0;
+    for (int i = 0; i < training_file_indexes.size(); i++) {
+        Log::debug("\t%s\n", filenames[training_file_indexes[i]].c_str());
+        ifstream cs_file(filenames[training_file_indexes[i]].c_str());
+        for(string line; getline(cs_file,line); ) {
+            line = regex_replace(line, std::regex("^ +| +$|( ) +"), "$1");
+            SentenceSeries *ss = new SentenceSeries(line, character_index,vocab);
+            sentence_series.push_back( ss );
+            training_sentence_indexes.push_back(current);
+            current++;
+        }
+    }
+    for (int i = 0; i < test_file_indexes.size(); i++) {
+        Log::debug("\t%s\n", filenames[test_file_indexes[i]].c_str());
+        ifstream cs_file(filenames[test_file_indexes[i]].c_str());
+        for(string line; getline(cs_file,line); ) {
+            line = regex_replace(line, std::regex("^ +| +$|( ) +"), "$1");
+            SentenceSeries *ss = new SentenceSeries(line, character_index,vocab);
+            sentence_series.push_back( ss );
+            test_sentence_indexes.push_back(current);
+            current++;
+        }
     }
 }
 
-
-
-
-Corpus* Corpus::generate_from_arguments(const vector<string> &arguments){
+Corpus* Corpus::generate_from_arguments(const vector<string> &arguments) {
 	Corpus *cs = new Corpus();
-
 	cs->filenames.clear();
-	cs->word_index.clear();
+	cs->character_index.clear();
 	cs->vocab.clear();
 
 	if (argument_exists(arguments, "--training_filenames") && argument_exists(arguments, "--test_filenames")) {
@@ -538,13 +495,13 @@ Corpus* Corpus::generate_from_arguments(const vector<string> &arguments){
         int current = 0;
         for (int i = 0; i < training_filenames.size(); i++) {
             cs->filenames.push_back(training_filenames[i]);
-            cs->training_indexes.push_back(current);
+            cs->training_file_indexes.push_back(current);
             current++;
         }
 
         for (int i = 0; i < test_filenames.size(); i++) {
             cs->filenames.push_back(test_filenames[i]);
-            cs->test_indexes.push_back(current);
+            cs->test_file_indexes.push_back(current);
             current++;
         }
 
@@ -557,38 +514,10 @@ Corpus* Corpus::generate_from_arguments(const vector<string> &arguments){
     cs->all_parameter_names.clear();
     cs->input_parameter_names.clear();
     cs->output_parameter_names.clear();
-
-	cs->load_word_library();
-
+	cs->load_character_library();
+    cs->normalize_type = "none";
 
 	return cs;
-
-}
-
-Corpus* Corpus::generate_test(const vector<string> &_test_filenames, const vector<string> &_input_parameter_names, const vector<string> &_output_parameter_names) {
-    Corpus *cs = new Corpus();
-
-    cs->filenames = _test_filenames;
-
-    cs->training_indexes.clear();
-    cs->test_indexes.clear();
-    for (int32_t i = 0; i < (int32_t)cs->filenames.size(); i++) {
-        cs->test_indexes.push_back(i);
-    }
-        
-    cs->input_parameter_names = _input_parameter_names;
-    cs->output_parameter_names = _output_parameter_names;
-    merge_parameter_names_word(cs->input_parameter_names, cs->output_parameter_names, cs->all_parameter_names);
-
-    cs->normalize_mins.clear();
-    cs->normalize_maxs.clear();
-
-    cs->normalize_avgs.clear();
-    cs->normalize_std_devs.clear();
-
-    cs->load_word_library();
-
-    return cs;
 }
 
 double Corpus::denormalize(string field_name, double value) {
@@ -597,26 +526,18 @@ double Corpus::denormalize(string field_name, double value) {
     } else if (normalize_type.compare("min_max") == 0) {
         double min = normalize_mins[field_name];
         double max = normalize_maxs[field_name];
-
         value = (value * (max-min)) + min;
-
         return value;
-
     } else if (normalize_type.compare("avg_std_dev") == 0) {
         double min = normalize_mins[field_name];
         double max = normalize_maxs[field_name];
         double avg = normalize_avgs[field_name];
         double std_dev = normalize_std_devs[field_name];
-
         double norm_min = (min - avg) / std_dev;
         double norm_max = (max - avg) / std_dev;
-        
         norm_max = fmax(norm_min, norm_max);
-
         value = (value * norm_max * std_dev) + avg;
-
         return value;
-
     } else {
         Log::fatal("Unknown normalize type on denormalize for '%s' and '%lf', '%s', this should never happen.\n", field_name.c_str(), value, normalize_type.c_str());
         exit(1);
@@ -625,45 +546,35 @@ double Corpus::denormalize(string field_name, double value) {
 
 void Corpus::normalize_min_max() {
     Log::info("doing min/max normalization:\n");
-
     for (int i = 0; i < all_parameter_names.size(); i++) {
         string parameter_name = all_parameter_names[i];
-
         double min = numeric_limits<double>::max();
         double max = -numeric_limits<double>::max();
-
         //get the min of all series of the same name
         //get the max of all series of the same name
 
         if (normalize_mins.count(parameter_name) > 0) {
             min = normalize_mins[parameter_name];
             max = normalize_maxs[parameter_name];
-
             Log::info("user specified bounds for ");
-
         }  else {
-            for (int j = 0; j < sent_series.size(); j++) {
-                double current_min = sent_series[j]->get_min(parameter_name);
-                double current_max = sent_series[j]->get_max(parameter_name);
-
+            for (int j = 0; j < sentence_series.size(); j++) {
+                double current_min = sentence_series[j]->get_min(parameter_name);
+                double current_max = sentence_series[j]->get_max(parameter_name);
                 if (current_min < min) min = current_min;
                 if (current_max > max) max = current_max;
             }
-
             normalize_mins[parameter_name] = min;
             normalize_maxs[parameter_name] = max;
-
             Log::info("calculated bounds for     ");
         }
 
         Log::info_no_header("%30s, min: %22.10lf, max: %22.10lf\n", parameter_name.c_str(), min, max);
-
         //for each series, subtract min, divide by (max - min)
-        for (int j = 0; j < sent_series.size(); j++) {
-            sent_series[j]->normalize_min_max(parameter_name, min, max);
+        for (int j = 0; j < sentence_series.size(); j++) {
+            sentence_series[j]->normalize_min_max(parameter_name, min, max);
         }
     }
-
     normalize_type = "min_max";
 }
 
@@ -673,7 +584,6 @@ void Corpus::normalize_min_max(const map<string,double> &_normalize_mins, const
 
     for (int32_t i = 0; i < (int32_t)all_parameter_names.size(); i++) {
         string field = all_parameter_names[i];
-
         if (normalize_mins.count(field) == 0) {
             //field doesn't exist in the normalize values, report an error
             Log::fatal("ERROR, couldn't find field '%s' in normalize min values.\n", field.c_str());
@@ -693,13 +603,11 @@ void Corpus::normalize_min_max(const map<string,double> &_normalize_mins, const
             }
             exit(1);
         }
-
         //for each series, subtract min, divide by (max - min)
-        for (int j = 0; j < sent_series.size(); j++) {
-            sent_series[j]->normalize_min_max(field, normalize_mins[field], normalize_maxs[field]);
+        for (int j = 0; j < sentence_series.size(); j++) {
+            sentence_series[j]->normalize_min_max(field, normalize_mins[field], normalize_maxs[field]);
         }
     }
-
     normalize_type = "min_max";
 }
 
@@ -708,73 +616,53 @@ void Corpus::normalize_avg_std_dev() {
 
     for (int i = 0; i < all_parameter_names.size(); i++) {
         string parameter_name = all_parameter_names[i];
-
         double min = numeric_limits<double>::max();
         double max = -numeric_limits<double>::max();
-
         double avg = 0.0;
         double std_dev = 0.0;
-
         if (normalize_avgs.count(parameter_name) > 0) {
             min = normalize_mins[parameter_name];
             max = normalize_maxs[parameter_name];
             avg = normalize_avgs[parameter_name];
             std_dev = normalize_std_devs[parameter_name];
-
             Log::info("user specified avg/std dev for ");
-
         }  else {
             double numerator_average = 0.0;
             long total_values = 0;
-
-            for (int j = 0; j < sent_series.size(); j++) {
-                int n_values = sent_series[j]->get_number_rows();
-                numerator_average += sent_series[j]->get_average(parameter_name) * n_values;
+            for (int j = 0; j < sentence_series.size(); j++) {
+                int n_values = sentence_series[j]->get_number_chars();
+                numerator_average += sentence_series[j]->get_average(parameter_name) * n_values;
                 total_values += n_values;
-
-                double current_min = sent_series[j]->get_min(parameter_name);
-                double current_max = sent_series[j]->get_max(parameter_name);
-
+                double current_min = sentence_series[j]->get_min(parameter_name);
+                double current_max = sentence_series[j]->get_max(parameter_name);
                 if (current_min < min) min = current_min;
                 if (current_max > max) max = current_max;
             }
-
             normalize_mins[parameter_name] = min;
             normalize_maxs[parameter_name] = max;
-
             avg = numerator_average / total_values;
-
             double numerator_std_dev = 0.0;
             //get the Bessel-corrected (n-1 denominator) combined standard deviation
-            for (int j = 0; j < sent_series.size(); j++) {
-                int n_values = sent_series[j]->get_number_rows();
-
-                double avg_diff = sent_series[j]->get_average(parameter_name) - avg;
-                numerator_std_dev += ((n_values - 1) * sent_series[j]->get_variance(parameter_name)) + (n_values * avg_diff * avg_diff);
+            for (int j = 0; j < sentence_series.size(); j++) {
+                int n_values = sentence_series[j]->get_number_chars();
+                double avg_diff = sentence_series[j]->get_average(parameter_name) - avg;
+                numerator_std_dev += ((n_values - 1) * sentence_series[j]->get_variance(parameter_name)) + (n_values * avg_diff * avg_diff);
             }
-
             std_dev = numerator_std_dev / (total_values - 1);
-
             normalize_avgs[parameter_name] = avg;
             normalize_std_devs[parameter_name] = std_dev;
-
-
             Log::info("calculated bounds for     ");
         }
         
         double norm_min = (min - avg) / std_dev;
         double norm_max = (max - avg) / std_dev;
-        
         norm_max = fmax(norm_min, norm_max);
-
         Log::info_no_header("%30s, min: %22.10lf, max: %22.10lf, norm_max; %22.10lf, combined average: %22.10lf, combined std_dev: %22.10lf\n", parameter_name.c_str(), min, max, avg, norm_max, std_dev);
-
         //for each series, subtract min, divide by (max - min)
-        for (int j = 0; j < sent_series.size(); j++) {
-            sent_series[j]->normalize_avg_std_dev(parameter_name, avg, std_dev, norm_max);
+        for (int j = 0; j < sentence_series.size(); j++) {
+            sentence_series[j]->normalize_avg_std_dev(parameter_name, avg, std_dev, norm_max);
         }
     }
-
     normalize_type = "avg_std_dev";
 }
 
@@ -786,7 +674,6 @@ void Corpus::normalize_avg_std_dev(const map<string,double> &_normalize_avgs, co
 
     for (int32_t i = 0; i < (int32_t)all_parameter_names.size(); i++) {
         string field = all_parameter_names[i];
-
         if (normalize_avgs.count(field) == 0) {
             //field doesn't exist in the normalize values, report an error
             Log::fatal("ERROR, couldn't find field '%s' in normalize avg values.\n", field.c_str());
@@ -796,7 +683,6 @@ void Corpus::normalize_avg_std_dev(const map<string,double> &_normalize_avgs, co
             }
             exit(1);
         }
-
         if (normalize_std_devs.count(field) == 0) {
             //field doesn't exist in the normalize values, report an error
             Log::fatal("ERROR, couldn't find field '%s' in normalize std_dev values.\n", field.c_str());
@@ -806,7 +692,6 @@ void Corpus::normalize_avg_std_dev(const map<string,double> &_normalize_avgs, co
             }
             exit(1);
         }
-
         if (normalize_mins.count(field) == 0) {
             //field doesn't exist in the normalize values, report an error
             Log::fatal("ERROR, couldn't find field '%s' in normalize min values.\n", field.c_str());
@@ -816,7 +701,6 @@ void Corpus::normalize_avg_std_dev(const map<string,double> &_normalize_avgs, co
             }
             exit(1);
         }
-
         if (normalize_maxs.count(field) == 0) {
             //field doesn't exist in the normalize values, report an error
             Log::fatal("ERROR, couldn't find field '%s' in normalize max values.\n", field.c_str());
@@ -831,150 +715,62 @@ void Corpus::normalize_avg_std_dev(const map<string,double> &_normalize_avgs, co
         double max = normalize_maxs[field];
         double avg = normalize_avgs[field];
         double std_dev = normalize_std_devs[field];
-
         double norm_min = (min - avg) / std_dev;
         double norm_max = (max - avg) / std_dev;
-        
         norm_max = fmax(norm_min, norm_max);
-
-
         //for each series, subtract avg, divide by std_dev; then divide by normalized_max to make between -1 and 1
-        for (int j = 0; j < sent_series.size(); j++) {
-            sent_series[j]->normalize_avg_std_dev(field, avg, std_dev, norm_max);
+        for (int j = 0; j < sentence_series.size(); j++) {
+            sentence_series[j]->normalize_avg_std_dev(field, avg, std_dev, norm_max);
         }
     }
-
     normalize_type = "avg_std_dev";
 }
 
-vector<vector<vector<double> > > batchify(int batch_size, vector<vector<vector<double> > > data) {
-
-
-    vector<vector<vector<double> > > batchData;
-        
-    int no_features = data[0].size();
-    int no_batches  =  0;
-    int batchNo =  -1;
-
-
-    for (int i = 0; i < data.size(); ++i) {
-        no_batches += (data[i][0].size() -1) / batch_size +1;
-        std:cout << no_batches << " " << std::endl;
-    }
-
-    if (data[0][0].size() < batch_size) {
-        batchData.resize(no_batches, vector<vector<double> >(no_features, vector<double>(data[0][0].size())));
-    } else {
-        batchData.resize(no_batches, vector<vector<double> >(no_features, vector<double>(batch_size)));
-    }
-
-
-    std::cout << batchData.size() << " " << data[0].size() << " " << batchData[0][0].size() << std::endl;
-
-    for (int k = 0; k < data.size(); ++k) {
-        for (int j = 0; j < data[k][0].size(); ++j) {
-            for (int i = 0; i < data[k].size(); ++i) {
-                if (i == 0 && (j % batch_size)== 0) batchNo++;
-
-                batchData[batchNo][i][j % batch_size] = data[k][i][j];
-            }
-        }
-    }
-
-
-    return batchData;
-
-}
-
-
-void Corpus::export_sent_series(const vector<int> &series_indexes, int word_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs) {
+void Corpus::export_sentence_series(const vector<int> &sentence_indexes, int character_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs) {
+    inputs.resize(sentence_indexes.size());
+    outputs.resize(sentence_indexes.size());
     
-    vector< vector< vector<double> > > temp_inputs;
-    vector< vector< vector<double> > > temp_outputs;
-
-    inputs.resize(series_indexes.size());
-    outputs.resize(series_indexes.size());
-
-    temp_inputs.resize(series_indexes.size());
-    temp_outputs.resize(series_indexes.size());
-
-
-    for (uint32_t i = 0; i < series_indexes.size(); i++) {
-        int series_index = series_indexes[i];
-
-        sent_series[series_index]->export_word_series(temp_inputs[i], -word_offset);
-        sent_series[series_index]->export_word_series(temp_outputs[i], word_offset);
+    for (int i = 0; i < sentence_indexes.size(); i++) {
+        int sentence_index = sentence_indexes[i];
+        sentence_series[sentence_index]->export_character_series(inputs[i], -character_offset);
+        sentence_series[sentence_index]->export_character_series(outputs[i], character_offset);
     }
-
-    inputs  = batchify(64, temp_inputs);
-    outputs = batchify(64, temp_outputs);
-
 }
 
 /**
  * This exports the time series marked as training series by the training_indexes vector.
+ * vector input: < sentence < character index < value over the sentence (onehot)> > >
  */
-void Corpus::export_training_series(int word_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs) {
-    if (training_indexes.size() == 0) {
-        Log::fatal("ERROR: attempting to export training time series, however the training_indexes were not specified.\n");
+void Corpus::export_training_series(int character_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs) {
+    if (training_sentence_indexes.size() == 0) {
+        Log::fatal("ERROR: attempting to export training time series, however the training_sentence_indexes were not specified.\n");
         exit(1);
     }
-
-    export_sent_series(training_indexes, word_offset, inputs, outputs);
+    export_sentence_series(training_sentence_indexes, character_offset, inputs, outputs);
 }
 
 /**
  * This exports the time series marked as test series by the test_indexes vector.
+ * vector input: < sentence < character index < value over the sentence (onehot)> > >
  */
-void Corpus::export_test_series(int word_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs) {
-    if (test_indexes.size() == 0) {
-        Log::fatal("ERROR: attempting to export test time series, however the test_indexes were not specified.\n");
+void Corpus::export_test_series(int character_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs) {
+    if (test_sentence_indexes.size() == 0) {
+        Log::fatal("ERROR: attempting to export test time series, however the test_sentence_indexes were not specified.\n");
         exit(1);
     }
-
-    export_sent_series(test_indexes, word_offset, inputs, outputs);
+    export_sentence_series(test_sentence_indexes, character_offset, inputs, outputs);
 }
 
 void Corpus::export_series_by_name(string field_name, vector< vector<double> > &exported_series) {
     exported_series.clear();
 
-    for (int32_t i = 0; i < sent_series.size(); i++) {
+    for (int32_t i = 0; i < sentence_series.size(); i++) {
         vector<double> current_series;
-
-        sent_series[i]->get_series(field_name, current_series);
+        sentence_series[i]->get_series(field_name, current_series);
         exported_series.push_back(current_series);
     }
 }
 
-
-void Corpus::write_sentence_series_sets(string base_filename) {
-    for (uint32_t i = 0; i < sent_series.size(); i++) {
-        ofstream outfile(base_filename + to_string(i) + ".csv");
-
-        vector< vector<double> > data;
-        sent_series[i]->export_word_series(data);
-
-        for (int j = 0; j < all_parameter_names.size(); j++) {
-            if (j > 0) {
-                outfile << ",";
-            }
-            outfile << all_parameter_names[j];
-        }
-        outfile << endl;
-
-        for (int j = 0; j < data[0].size(); j++) {
-            for (int k = 0; k < data.size(); k++) {
-                if (k > 0) {
-                    outfile << ",";
-                }
-
-                outfile << data[k][j];
-            }
-            outfile << endl;
-        }
-    }
-}
-
 string Corpus::get_normalize_type() const {
     return normalize_type;
 }
@@ -1005,7 +801,7 @@ vector<string> Corpus::get_output_parameter_names() const {
 }
 
 int Corpus::get_number_series() const {
-    return sent_series.size();
+    return sentence_series.size();
 }
 
 int Corpus::get_number_inputs() const {
@@ -1016,14 +812,14 @@ int Corpus::get_number_outputs() const {
     return output_parameter_names.size();
 }
 
-void Corpus::set_training_indexes(const vector<int> &_training_indexes) {
-    training_indexes = _training_indexes;
+void Corpus::set_training_file_indexes(const vector<int> &_training_file_indexes) {
+    training_file_indexes = _training_file_indexes;
 }
 
-void Corpus::set_test_indexes(const vector<int> &_test_indexes) {
-    test_indexes = _test_indexes;
+void Corpus::set_test_file_indexes(const vector<int> &_test_file_indexes) {
+    test_file_indexes = _test_file_indexes;
 }
 
 SentenceSeries* Corpus::get_set(int32_t i) {
-    return sent_series.at(i);
+    return sentence_series.at(i);
 }
diff --git a/character_series/character_series.hxx b/character_series/character_series.hxx
new file mode 100644
index 00000000..54609c7e
--- /dev/null
+++ b/character_series/character_series.hxx
@@ -0,0 +1,276 @@
+#ifndef EXAMM_CHARACTER_SERIES_HXX
+#define EXAMM_CHARACTER_SERIES_HXX
+
+#include <iostream>
+using std::ostream;
+
+#include <string>
+using std::string;
+
+#include <map>
+using std::map;
+
+#include <vector>
+using std::vector;
+
+
+ class CharacterSeries{
+ 	private:
+        /**
+         * Specifies the string name in the data.
+         * All the unique strings in the datasets will have its each character series.
+         */
+ 		string name;
+ 		// /**
+        //  * Specifies the number of the unique strings in the dataset.
+        //  */
+        // int vocab_size;
+
+        /**
+         *  Specifies the minimum of the character series in a particular string.
+         *  This could be 0 or 1
+         */
+ 		double min;
+        /**
+         *  Specifies the average of the character series in a particular string.
+         *  This tells about the characters which are used the most.
+         */
+        double average;
+        /**
+         *  Specifies the maximum of the character series in a particular string.
+         *  This could be 0 or 1
+         */
+        double max;
+        /**
+         *  Specifies the std. deviation  of the character series in a particular string.
+         */
+        double std_dev;
+        /**
+         *  Specifies the variance of the character series in a particular string.
+         *  This tells about the closeness of a character in the dataset. 
+         */
+        double variance;
+        double min_change;
+        double max_change;
+        /**
+         *  Storers the values in the character series respective of the time in a particular string.
+         */
+ 		vector<double> values;
+ 		CharacterSeries(); 
+
+ 	public:
+ 		CharacterSeries(string _name);
+        void add_value(double value);
+        double get_value(int i);
+        void calculate_statistics();
+        void print_statistics();
+        int get_number_values() const;
+        double get_min() const;
+        double get_average() const;
+        double get_max() const;
+        double get_std_dev() const;
+        double get_variance() const;
+        double get_min_change() const;
+        double get_max_change() const;
+        void normalize_min_max(double min, double max);
+        void normalize_avg_std_dev(double avg, double std_dev, double norm_max);
+        void cut(int32_t start, int32_t stop);
+        double get_correlation(const CharacterSeries *other, int32_t lag) const;
+        CharacterSeries* copy();
+        void copy_values(vector<double> &series);
+
+ };
+
+ class SentenceSeries {
+	private:
+
+        /**
+         *  the number of chars in a sentence
+         */
+        int number_chars;
+        /**
+         *  Specifices the filename for the training or testing data. 
+         */
+        string sentence;
+        /**
+         *  Maps the character string to index of the character series in a particular string. 
+         */
+      	map<string,int> vocab;
+        /**
+         *  Maps the index to character string of the character series in a particular string.
+         */
+      	vector<string> character_index;
+        /**
+         *  Maps the character string to the character series in a particular string.
+         */
+        map <string,CharacterSeries*> character_series;
+
+        SentenceSeries();
+
+    public:
+        SentenceSeries(const string _sentence, const vector<string> & _character_index , const map<string,int> &_vocab);        
+        ~SentenceSeries();
+        void add_character_series(string name);
+        int get_number_chars() const;
+        int get_number_columns() const;
+        string get_filename() const;
+        vector<string> get_character_index() const;
+        void get_series(string character_name, vector<double> &series);
+        double get_min(string character);
+        double get_average(string character);
+        double get_max(string character);
+        double get_std_dev(string character);
+        double get_variance(string character);
+        double get_min_change(string character);
+        double get_max_change(string character);
+        double get_correlation(string character1, string character2, int32_t lag) const;
+        void normalize_min_max(string character, double min, double max);
+        void normalize_avg_std_dev(string character, double avg, double std_dev, double norm_max);
+        void export_character_series(vector< vector<double> > &data , int32_t character_offset);
+        // void export_character_series(vector< vector<double> > &data );
+        SentenceSeries* copy();
+        void select_parameters(const vector<string> &input_parameter_names, const vector<string> &output_parameter_names);
+        void select_parameters(const vector<string> &parameter_names);
+};
+
+
+class Corpus {
+
+	private:
+        // /**
+        //  *  Specifices the chunks in which the dataset is to be divided into chunks.
+        //  */
+        // uint32_t sequence_length;
+		string normalize_type;
+
+        /**
+         *  Stores all the filenames including training and testing 
+         */
+        vector<string> filenames;
+
+        /**
+         *  stores the training index of the filenames. 
+         */
+        vector<int> training_file_indexes;
+        
+        /**
+         *  stores the testing index of the filenames. 
+         */        
+        vector<int> test_file_indexes;
+
+        /**
+         *  stores the training index of the sentences. 
+         *  it's different from the training_file_indexes because 1 file can have many sentences
+         */
+        vector<int> training_sentence_indexes;
+        
+        /**
+         *  stores the testing index of the sentences. 
+         *  it's different from the test_file_indexes because 1 file can have many sentences
+         */        
+        vector<int> test_sentence_indexes;
+
+        /**
+         *  stores the input parameter names of the filenames.
+         *  stores the unique characters used in the filenames. 
+         */          
+        vector<string> input_parameter_names;
+        /**
+         *  stores the input parameter names of the filenames.
+         *  stores the unique characters used in the filenames. 
+         */
+        vector<string> output_parameter_names;
+        /**
+         *  stores the input parameter names of the filenames.
+         *  stores the unique characters used in the filenames. 
+         */
+        vector<string> all_parameter_names;
+
+        /**
+         *  stores the Sentence series used in the filenames.
+         * Each file is divided into sentences and character series is made for each character in the sentence. 
+         */
+        vector<SentenceSeries*> sentence_series;
+        map<string,double> normalize_mins;
+        map<string,double> normalize_maxs;
+        map<string,double> normalize_avgs;
+        map<string,double> normalize_std_devs;
+
+        /**
+         *  Maps the index to character string of the character series in a particular filename.
+         */
+		vector<string> character_index;
+		
+        /**
+         *  Maps the character string to the character series in a particular filename.
+         */
+        map<string,int> vocab;
+
+        /**
+        * Loads the filenames, character index and the vocabulary of the files.
+        */
+		void load_character_library();
+
+
+	public:
+
+		Corpus();
+		~Corpus();
+		static Corpus* generate_from_arguments(const vector<string> &arguments);
+        /**
+         *  TODO: generate_test function is not implemented. 
+         *  Different from time series, which each file is a time series
+         *  For Charater level prediction, need to load the input files and put each sentence into a seperate sentence class
+         */
+		static Corpus* generate_test(const vector<string> &_test_filenames, const vector<string> &_input_parameter_names, const vector<string> &_output_parameter_names);
+        void normalize_min_max();
+        void normalize_min_max(const map<string,double> &_normalize_mins, const map<string,double> &_normalize_maxs);
+        void normalize_avg_std_dev();
+        void normalize_avg_std_dev(const map<string,double> &_normalize_avgs, const map<string,double> &_normalize_std_devs, const map<string,double> &_normalize_mins, const map<string,double> &_normalize_maxs);
+        /**
+         *  Generates the csv data file. 
+         * \param base_filename is the filename to be used.
+         *
+         */
+        void write_sentence_series_sets(string base_filename);
+        void export_sentence_series(const vector<int> &series_indexes, int character_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs);
+        /**
+         * Exports Corpus Dataset to be used for training in  RNN genome.
+         *
+         * \param series_indexes are the indexes of the input parameters to be used in the dataset
+         * \param character_offset is used to predict the after how many characters, the predictions to be done in the future. 
+         * \param inputs is the data used for training in the RNN genome
+         * \param outpus is the data used for training in the RNN genome
+         *
+         */
+        void export_training_series(int character_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs);
+        /**
+         * Exports Corpus Dataset to be used for testing in RNN genome.
+         *
+         * \param series_indexes are the indexes of the input parameters to be used in the dataset
+         * \param character_offset is used to predict the after how many characters, the predictions to be done in the future. 
+         * \param inputs is the data used for testing in the RNN genome
+         * \param outpus is the data used for testing in the RNN genome
+         *
+         */
+
+        void export_test_series(int character_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs);
+        void export_series_by_name(string field_name, vector< vector<double> > &exported_series);
+        double denormalize(string field_name, double value);
+        string get_normalize_type() const;
+        map<string,double> get_normalize_mins() const;
+        map<string,double> get_normalize_maxs() const;
+        map<string,double> get_normalize_avgs() const;
+        map<string,double> get_normalize_std_devs() const;
+        vector<string> get_input_parameter_names() const;
+        vector<string> get_output_parameter_names() const;
+
+        int get_number_series() const;
+        int get_number_inputs() const;
+        int get_number_outputs() const;
+        void set_training_file_indexes(const vector<int> &_training_file_indexes);
+        void set_test_file_indexes(const vector<int> &_test_file_indexes);
+        SentenceSeries *get_set(int32_t i);
+};
+
+#endif
\ No newline at end of file
diff --git a/datasets/2018_coal/burner_small.csv b/datasets/2018_coal/burner_small.csv
new file mode 100644
index 00000000..1c0d2694
--- /dev/null
+++ b/datasets/2018_coal/burner_small.csv
@@ -0,0 +1,7 @@
+Conditioner_Inlet_Temp,Conditioner_Outlet_Temp,Coal_Feeder_Rate,Primary_Air_Flow,Primary_Air_Split,System_Secondary_Air_Flow_Total,Secondary_Air_Flow,Secondary_Air_Split,Tertiary_Air_Split,Total_Comb_Air_Flow,Supp_Fuel_Flow,Main_Flm_Int
+0.59995,0.371572,0.920551,0.708776,0.980315,0.8538,0.722619,0.0155477,0.0514978,0.736751,0.00340125,0.73803
+0.602043,0.370189,0.913209,0.709145,0.980433,0.843072,0.714865,0.015333,0.0519952,0.736368,0.00340125,0.777362
+0.598725,0.3653,0.923316,0.703603,0.980458,0.82285,0.700248,0.0151993,0.0526519,0.728916,0.00340125,0.77878
+0.598352,0.372956,0.907022,0.694319,0.980221,0.8082,0.689659,0.0153123,0.0536368,0.71841,0.00340125,0.736105
+0.600201,0.371572,0.920551,0.690012,0.980233,0.792356,0.678207,0.0152009,0.0542537,0.712665,0.00340125,0.776855
+0.598108,0.373892,0.917366,0.68872,0.979981,0.803057,0.685942,0.0154332,0.0546019,0.712764,0.00340125,0.779795
diff --git a/datasets/penn/input.txt b/datasets/penn/input.txt
deleted file mode 100644
index 853ba131..00000000
--- a/datasets/penn/input.txt
+++ /dev/null
@@ -1 +0,0 @@
- consumers may move their telephones a little closer
\ No newline at end of file
diff --git a/datasets/penn/train_small.txt b/datasets/penn/train_small.txt
new file mode 100644
index 00000000..768f07c5
--- /dev/null
+++ b/datasets/penn/train_small.txt
@@ -0,0 +1,22 @@
+ no it was n't black monday 
+ but while the new york stock exchange did n't fall apart friday as the dow jones industrial average plunged N points most of it in the final hour it barely managed to stay this side of chaos 
+ some circuit breakers installed after the october N crash failed their first test traders say unable to cool the selling panic in both stocks and futures 
+ the N stock specialist firms on the big board floor the buyers and sellers of last resort who were criticized after the N crash once again could n't handle the selling pressure 
+ big investment banks refused to step up to the plate to support the beleaguered floor traders by buying big blocks of stock traders say 
+ heavy selling of standard & poor 's 500-stock index futures in chicago <unk> beat stocks downward 
+ seven big board stocks ual amr bankamerica walt disney capital cities\/abc philip morris and pacific telesis group stopped trading and never resumed 
+ the <unk> has already begun 
+ the equity market was <unk> 
+ once again the specialists were not able to handle the imbalances on the floor of the new york stock exchange said christopher <unk> senior vice president at <unk> securities corp 
+ <unk> james <unk> chairman of specialists henderson brothers inc. it is easy to say the specialist is n't doing his job 
+ when the dollar is in a <unk> even central banks ca n't stop it 
+ speculators are calling for a degree of liquidity that is not there in the market 
+ many money managers and some traders had already left their offices early friday afternoon on a warm autumn day because the stock market was so quiet 
+ then in a <unk> plunge the dow jones industrials in barely an hour surrendered about a third of their gains this year <unk> up a 190.58-point or N N loss on the day in <unk> trading volume 
+ <unk> trading accelerated to N million shares a record for the big board 
+ at the end of the day N million shares were traded 
+ the dow jones industrials closed at N 
+ the dow 's decline was second in point terms only to the <unk> black monday crash that occurred oct. N N 
+ in percentage terms however the dow 's dive was the <unk> ever and the sharpest since the market fell N or N N a week after black monday 
+ the dow fell N N on black monday 
+ shares of ual the parent of united airlines were extremely active all day friday reacting to news and rumors about the proposed $ N billion buy-out of the airline by an <unk> group 
\ No newline at end of file
diff --git a/datasets/penn/valid_small.txt b/datasets/penn/valid_small.txt
new file mode 100644
index 00000000..12332c2d
--- /dev/null
+++ b/datasets/penn/valid_small.txt
@@ -0,0 +1,3 @@
+we 've been spending a lot of time in los angeles talking to tv production people says mike parks president of call interactive which supplied technology for both abc sports and nbc 's consumer minutes 
+ with the competitiveness of the television market these days everyone is looking for a way to get viewers more excited 
+ one of the leaders behind the expanded use of N numbers is call interactive a joint venture of giants american express co. and american telephone & telegraph co 
\ No newline at end of file
diff --git a/datasets/pennchar/input.txt b/datasets/pennchar/input.txt
deleted file mode 100644
index edce96ca..00000000
--- a/datasets/pennchar/input.txt
+++ /dev/null
@@ -1,16 +0,0 @@
-a e r _ b a n k n o t e _ b e r l i t z _ c a l l o w a y _ c e n t r u s t _ c l u e t t _ f r o m s t e i n _ g i t a n o _ g u t e r m a n _ h y d r o - q u e b e c _ i p o _ k i a _ m e m o t e c _ m l x _ n a h b _ p u n t s _ r a k e _ r e g a t t a _ r u b e n s _ s i m _ s n a c k - f o o d _ s s a n g y o n g _ s w a p o _ w a c h t e r 
- p i e r r e _ < u n k > _ N _ y e a r s _ o l d _ w i l l _ j o i n _ t h e _ b o a r d _ a s _ a _ n o n e x e c u t i v e _ d i r e c t o r _ n o v . _ N 
- m r . _ < u n k > _ i s _ c h a i r m a n _ o f _ < u n k > _ n . v . _ t h e _ d u t c h _ p u b l i s h i n g _ g r o u p 
- r u d o l p h _ < u n k > _ N _ y e a r s _ o l d _ a n d _ f o r m e r _ c h a i r m a n _ o f _ c o n s o l i d a t e d _ g o l d _ f i e l d s _ p l c _ w a s _ n a m e d _ a _ n o n e x e c u t i v e _ d i r e c t o r _ o f _ t h i s _ b r i t i s h _ i n d u s t r i a l _ c o n g l o m e r a t e 
- a _ f o r m _ o f _ a s b e s t o s _ o n c e _ u s e d _ t o _ m a k e _ k e n t _ c i g a r e t t e _ f i l t e r s _ h a s _ c a u s e d _ a _ h i g h _ p e r c e n t a g e _ o f _ c a n c e r _ d e a t h s _ a m o n g _ a _ g r o u p _ o f _ w o r k e r s _ e x p o s e d _ t o _ i t _ m o r e _ t h a n _ N _ y e a r s _ a g o _ r e s e a r c h e r s _ r e p o r t e d 
- t h e _ a s b e s t o s _ f i b e r _ < u n k > _ i s _ u n u s u a l l y _ < u n k > _ o n c e _ i t _ e n t e r s _ t h e _ < u n k > _ w i t h _ e v e n _ b r i e f _ e x p o s u r e s _ t o _ i t _ c a u s i n g _ s y m p t o m s _ t h a t _ s h o w _ u p _ d e c a d e s _ l a t e r _ r e s e a r c h e r s _ s a i d 
- < u n k > _ i n c . _ t h e _ u n i t _ o f _ n e w _ y o r k - b a s e d _ < u n k > _ c o r p . _ t h a t _ m a k e s _ k e n t _ c i g a r e t t e s _ s t o p p e d _ u s i n g _ < u n k > _ i n _ i t s _ < u n k > _ c i g a r e t t e _ f i l t e r s _ i n _ N 
- a l t h o u g h _ p r e l i m i n a r y _ f i n d i n g s _ w e r e _ r e p o r t e d _ m o r e _ t h a n _ a _ y e a r _ a g o _ t h e _ l a t e s t _ r e s u l t s _ a p p e a r _ i n _ t o d a y _ ' s _ n e w _ e n g l a n d _ j o u r n a l _ o f _ m e d i c i n e _ a _ f o r u m _ l i k e l y _ t o _ b r i n g _ n e w _ a t t e n t i o n _ t o _ t h e _ p r o b l e m 
- a _ < u n k > _ < u n k > _ s a i d _ t h i s _ i s _ a n _ o l d _ s t o r y 
- w e _ ' r e _ t a l k i n g _ a b o u t _ y e a r s _ a g o _ b e f o r e _ a n y o n e _ h e a r d _ o f _ a s b e s t o s _ h a v i n g _ a n y _ q u e s t i o n a b l e _ p r o p e r t i e s 
- t h e r e _ i s _ n o _ a s b e s t o s _ i n _ o u r _ p r o d u c t s _ n o w 
- n e i t h e r _ < u n k > _ n o r _ t h e _ r e s e a r c h e r s _ w h o _ s t u d i e d _ t h e _ w o r k e r s _ w e r e _ a w a r e _ o f _ a n y _ r e s e a r c h _ o n _ s m o k e r s _ o f _ t h e _ k e n t _ c i g a r e t t e s 
- w e _ h a v e _ n o _ u s e f u l _ i n f o r m a t i o n _ o n _ w h e t h e r _ u s e r s _ a r e _ a t _ r i s k _ s a i d _ j a m e s _ a . _ < u n k > _ o f _ b o s t o n _ ' s _ < u n k > _ c a n c e r _ i n s t i t u t e 
- d r . _ < u n k > _ l e d _ a _ t e a m _ o f _ r e s e a r c h e r s _ f r o m _ t h e _ n a t i o n a l _ c a n c e r _ i n s t i t u t e _ a n d _ t h e _ m e d i c a l _ s c h o o l s _ o f _ h a r v a r d _ u n i v e r s i t y _ a n d _ b o s t o n _ u n i v e r s i t y 
- t h e _ < u n k > _ s p o k e s w o m a n _ s a i d _ a s b e s t o s _ w a s _ u s e d _ i n _ v e r y _ m o d e s t _ a m o u n t s _ i n _ m a k i n g _ p a p e r _ f o r _ t h e _ f i l t e r s _ i n _ t h e _ e a r l y _ 1 9 5 0 s _ a n d _ r e p l a c e d _ w i t h _ a _ d i f f e r e n t _ t y p e _ o f _ < u n k > _ i n _ N 
- f r o m _ N _ t o _ N _ N _ b i l l i o n _ k e n t _ c i g a r e t t e s _ w i t h _ t h e _ f i l t e r s _ w e r e _ s o l d _ t h e _ c o m p a n y _ s a i d 
\ No newline at end of file
diff --git a/datasets/pennchar/train_small.txt b/datasets/pennchar/train_small.txt
new file mode 100644
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--- /dev/null
+++ b/datasets/pennchar/train_small.txt
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+n o _ i t _ w a s _ n ' t _ b l a c k _ m o n d a y 
+ b u t _ w h i l e _ t h e _ n e w _ y o r k _ s t o c k _ e x c h a n g e _ d i d _ n ' t _ f a l l _ a p a r t _ f r i d a y _ a s _ t h e _ d o w _ j o n e s _ i n d u s t r i a l _ a v e r a g e _ p l u n g e d _ N _ p o i n t s _ m o s t _ o f _ i t _ i n _ t h e _ f i n a l _ h o u r _ i t _ b a r e l y _ m a n a g e d _ t o _ s t a y _ t h i s _ s i d e _ o f _ c h a o s 
+ s o m e _ c i r c u i t _ b r e a k e r s _ i n s t a l l e d _ a f t e r _ t h e _ o c t o b e r _ N _ c r a s h _ f a i l e d _ t h e i r _ f i r s t _ t e s t _ t r a d e r s _ s a y _ u n a b l e _ t o _ c o o l _ t h e _ s e l l i n g _ p a n i c _ i n _ b o t h _ s t o c k s _ a n d _ f u t u r e s 
+ t h e _ N _ s t o c k _ s p e c i a l i s t _ f i r m s _ o n _ t h e _ b i g _ b o a r d _ f l o o r _ t h e _ b u y e r s _ a n d _ s e l l e r s _ o f _ l a s t _ r e s o r t _ w h o _ w e r e _ c r i t i c i z e d _ a f t e r _ t h e _ N _ c r a s h _ o n c e _ a g a i n _ c o u l d _ n ' t _ h a n d l e _ t h e _ s e l l i n g _ p r e s s u r e 
+ b i g _ i n v e s t m e n t _ b a n k s _ r e f u s e d _ t o _ s t e p _ u p _ t o _ t h e _ p l a t e _ t o _ s u p p o r t _ t h e _ b e l e a g u e r e d _ f l o o r _ t r a d e r s _ b y _ b u y i n g _ b i g _ b l o c k s _ o f _ s t o c k _ t r a d e r s _ s a y 
+ h e a v y _ s e l l i n g _ o f _ s t a n d a r d _ & _ p o o r _ ' s _ 5 0 0 - s t o c k _ i n d e x _ f u t u r e s _ i n _ c h i c a g o _ < u n k > _ b e a t _ s t o c k s _ d o w n w a r d 
+ s e v e n _ b i g _ b o a r d _ s t o c k s _ u a l _ a m r _ b a n k a m e r i c a _ w a l t _ d i s n e y _ c a p i t a l _ c i t i e s \ / a b c _ p h i l i p _ m o r r i s _ a n d _ p a c i f i c _ t e l e s i s _ g r o u p _ s t o p p e d _ t r a d i n g _ a n d _ n e v e r _ r e s u m e d 
+ t h e _ < u n k > _ h a s _ a l r e a d y _ b e g u n 
+ t h e _ e q u i t y _ m a r k e t _ w a s _ < u n k > 
+ o n c e _ a g a i n _ t h e _ s p e c i a l i s t s _ w e r e _ n o t _ a b l e _ t o _ h a n d l e _ t h e _ i m b a l a n c e s _ o n _ t h e _ f l o o r _ o f _ t h e _ n e w _ y o r k _ s t o c k _ e x c h a n g e _ s a i d _ c h r i s t o p h e r _ < u n k > _ s e n i o r _ v i c e _ p r e s i d e n t _ a t _ < u n k > _ s e c u r i t i e s _ c o r p 
+ < u n k > _ j a m e s _ < u n k > _ c h a i r m a n _ o f _ s p e c i a l i s t s _ h e n d e r s o n _ b r o t h e r s _ i n c . _ i t _ i s _ e a s y _ t o _ s a y _ t h e _ s p e c i a l i s t _ i s _ n ' t _ d o i n g _ h i s _ j o b 
+ w h e n _ t h e _ d o l l a r _ i s _ i n _ a _ < u n k > _ e v e n _ c e n t r a l _ b a n k s _ c a _ n ' t _ s t o p _ i t 
+ s p e c u l a t o r s _ a r e _ c a l l i n g _ f o r _ a _ d e g r e e _ o f _ l i q u i d i t y _ t h a t _ i s _ n o t _ t h e r e _ i n _ t h e _ m a r k e t 
+ i f _ b o e i n g _ g o e s _ a h e a d _ w i t h _ t h e _ l a r g e r _ N _ t h e _ p l a n e _ c o u l d _ h i t _ t h e _ m a r k e t _ i n _ t h e _ m i d - 1 9 9 0 s 
+ m a g n a _ r e c e n t l y _ c u t _ i t s _ q u a r t e r l y _ d i v i d e n d _ i n _ h a l f _ a n d _ t h e _ c o m p a n y _ ' s _ c l a s s _ a _ s h a r e s _ a r e _ < u n k > _ f a r _ b e l o w _ t h e i r _ 5 2 - w e e k _ h i g h _ o f _ N _ c a n a d i a n _ d o l l a r s _ u s $ _ N 
+ t h e _ t h e o r y _ i s _ t h a t _ s e y m o u r _ i s _ t h e _ c h i e f _ d e s i g n e r _ o f _ t h e _ c r a y - 3 _ a n d _ w i t h o u t _ h i m _ i t _ c o u l d _ n o t _ b e _ c o m p l e t e d 
+ s o _ f a r _ a l l _ t h e _ s t u d i e s _ h a v e _ c o n c l u d e d _ t h a t _ r u - 4 8 6 _ i s _ s a f e 
+ i n s t i t u t i o n s _ h a d _ b e c o m e _ a c t i v e _ m a r k e t _ p l a y e r s _ i n _ t h e _ e a r l y _ 1 9 7 0 s _ a n d _ s o u g h t _ e x c h a n g e _ s e a t s _ t o _ h a n d l e _ t h e i r _ o w n _ t r a d e s 
+ p i e r r e _ < u n k > _ N _ y e a r s _ o l d _ w i l l _ j o i n _ t h e _ b o a r d _ a s _ a _ n o n e x e c u t i v e _ d i r e c t o r _ n o v . _ N 
+ t h e _ b r i t i s h _ p a p e r _ p a c k a g i n g _ a n d _ p u b l i s h i n g _ c o n c e r n _ s a i d _ p r o f i t _ f r o m _ c o n t i n u i n g _ l i n e s _ f e l l _ N _ N _ t o _ # _ N _ m i l l i o n _ f r o m _ # _ N _ m i l l i o n 
+ y e a r _ e n d e d _ d e c . _ N _ N _ \ * 
\ No newline at end of file
diff --git a/datasets/pennchar/valid_small.txt b/datasets/pennchar/valid_small.txt
new file mode 100644
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+c o n s u m e r s _ m a y _ w a n t _ t o _ m o v e _ t h e i r _ t e l e p h o n e s _ a _ l i t t l e _ c l o s e r _ t o _ t h e _ t v _ s e t 
+ < u n k > _ < u n k > _ w a t c h i n g _ a b c _ ' s _ m o n d a y _ n i g h t _ f o o t b a l l _ c a n _ n o w _ v o t e _ d u r i n g _ < u n k > _ f o r _ t h e _ g r e a t e s t _ p l a y _ i n _ N _ y e a r s _ f r o m _ a m o n g _ f o u r _ o r _ f i v e _ < u n k > _ < u n k > 
+ t w o _ w e e k s _ a g o _ v i e w e r s _ o f _ s e v e r a l _ n b c _ < u n k > _ c o n s u m e r _ s e g m e n t s _ s t a r t e d _ c a l l i n g _ a _ N _ n u m b e r _ f o r _ a d v i c e _ o n _ v a r i o u s _ < u n k > _ i s s u e s 
+ a n d _ t h e _ n e w _ s y n d i c a t e d _ r e a l i t y _ s h o w _ h a r d _ c o p y _ r e c o r d s _ v i e w e r s _ ' _ o p i n i o n s _ f o r _ p o s s i b l e _ a i r i n g _ o n _ t h e _ n e x t _ d a y _ ' s _ s h o w 
+ i n t e r a c t i v e _
+ t h e n _ t h e _ w h o l e _ t h i n g _ w i l l _ s t a r t _ t o _ c o l l a p s e _ j u s t _ a s _ i t _ d i d _ i n _ t h e _ 1 9 7 0 s _ a n d _ t h e _ g h o s t s _ a n d _ < u n k > _ w i l l _ b e _ < u n k > _ t h r o u g h _ t h e _ p l a c e _ t u r n i n g _ p e o p l e _ ' s _ h a i r _ w h i t e 
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<table cellspacing="0" cellpadding="0">
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+        name="MSearchResults" id="MSearchResults">
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+  <div class="headertitle">
+<div class="title">Class List</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock">Here are the classes, structs, unions and interfaces with brief descriptions:</div><div class="directory">
+<div class="levels">[detail level <span onclick="javascript:toggleLevel(1);">1</span><span onclick="javascript:toggleLevel(2);">2</span>]</div><table class="directory">
+<tr id="row_0_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_0_" class="arrow" onclick="toggleFolder('0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><b>config_to_arg</b></td><td class="desc"></td></tr>
+<tr id="row_0_0_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html" target="_self">ConfigToArg</a></td><td class="desc"></td></tr>
+<tr id="row_1_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_1_" class="arrow" onclick="toggleFolder('1_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><b>examm_task</b></td><td class="desc"></td></tr>
+<tr id="row_1_0_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classexamm__task_1_1_examm_task.html" target="_self">ExammTask</a></td><td class="desc"></td></tr>
+<tr id="row_2_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_2_" class="arrow" onclick="toggleFolder('2_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><b>island_purging_args</b></td><td class="desc"></td></tr>
+<tr id="row_2_0_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classisland__purging__args_1_1_island_purging_args.html" target="_self">IslandPurgingArgs</a></td><td class="desc"></td></tr>
+<tr id="row_3_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_3_" class="arrow" onclick="toggleFolder('3_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><b>rec_args</b></td><td class="desc"></td></tr>
+<tr id="row_3_0_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classrec__args_1_1_rec_args.html" target="_self">RecArgs</a></td><td class="desc"></td></tr>
+<tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_c_n_n___edge.html" target="_self">CNN_Edge</a></td><td class="desc"></td></tr>
+<tr id="row_5_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_c_n_n___genome.html" target="_self">CNN_Genome</a></td><td class="desc"></td></tr>
+<tr id="row_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_c_n_n___node.html" target="_self">CNN_Node</a></td><td class="desc"></td></tr>
+<tr id="row_7_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="struct_coin.html" target="_self">Coin</a></td><td class="desc"></td></tr>
+<tr id="row_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="struct_color.html" target="_self">Color</a></td><td class="desc"></td></tr>
+<tr id="row_9_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="struct_color_profile.html" target="_self">ColorProfile</a></td><td class="desc"></td></tr>
+<tr id="row_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="struct_color_tree.html" target="_self">ColorTree</a></td><td class="desc"></td></tr>
+<tr id="row_11_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_consolidated_statistics.html" target="_self">ConsolidatedStatistics</a></td><td class="desc"></td></tr>
+<tr id="row_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_corpus.html" target="_self">Corpus</a></td><td class="desc"></td></tr>
+<tr id="row_13_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcs__less__than__avg.html" target="_self">cs_less_than_avg</a></td><td class="desc"></td></tr>
+<tr id="row_14_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcs__less__than__max.html" target="_self">cs_less_than_max</a></td><td class="desc"></td></tr>
+<tr id="row_15_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcs__less__than__min.html" target="_self">cs_less_than_min</a></td><td class="desc"></td></tr>
+<tr id="row_16_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_delta___node.html" target="_self">Delta_Node</a></td><td class="desc"></td></tr>
+<tr id="row_17_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_e_n_a_r_c___node.html" target="_self">ENARC_Node</a></td><td class="desc"></td></tr>
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+<tr id="row_19_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_e_x_a_c_t.html" target="_self">EXACT</a></td><td class="desc"></td></tr>
+<tr id="row_20_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="struct_e_x_a_c_t___r_e_s_u_l_t.html" target="_self">EXACT_RESULT</a></td><td class="desc"></td></tr>
+<tr id="row_21_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_e_x_a_m_m.html" target="_self">EXAMM</a></td><td class="desc"></td></tr>
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+<tr id="row_24_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="struct_huffman_tree.html" target="_self">HuffmanTree</a></td><td class="desc"></td></tr>
+<tr id="row_25_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_image.html" target="_self">Image</a></td><td class="desc"></td></tr>
+<tr id="row_26_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_image_interface.html" target="_self">ImageInterface</a></td><td class="desc"></td></tr>
+<tr id="row_27_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_images.html" target="_self">Images</a></td><td class="desc"></td></tr>
+<tr id="row_28_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_images_interface.html" target="_self">ImagesInterface</a></td><td class="desc"></td></tr>
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+</div><!--header-->
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef GIBBS_ARGUMENTS_H</span></div>
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+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#include &lt;sstream&gt;</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;cstdlib&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160; </div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using namespace </span><a class="codeRef" href="http://en.cppreference.com/w/namespacestd.html">std</a>;</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160; </div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keywordtype">bool</span> argument_exists(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> arguments, <span class="keywordtype">string</span> argument);</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt;</div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="keywordtype">bool</span> get_argument_vector(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> arguments, <span class="keywordtype">string</span> argument, <span class="keywordtype">bool</span> required, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;T&gt;</a> &amp;results) {</div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;    <span class="keywordtype">bool</span> found = <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/size.html">size</a>(); i++) {</div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;        <span class="keywordflow">if</span> (argument.<a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string/compare.html">compare</a>(arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(i)) == 0) {</div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;            i++;</div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;            <span class="keywordflow">while</span> (i &lt; arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/size.html">size</a>() &amp;&amp; arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(i).substr(0,2).compare(<span class="stringliteral">&quot;--&quot;</span>) != 0) {</div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;                T result;</div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;                <span class="keywordflow">if</span> ( !(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_stringstream.html">stringstream</a>(arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(i++)) &gt;&gt; result) ) {</div>
+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;                    <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">cerr</a> &lt;&lt; <span class="stringliteral">&quot;ERROR: invalid argument &#39;&quot;</span> &lt;&lt; argument &lt;&lt; <span class="stringliteral">&quot;&#39;: &quot;</span> &lt;&lt; arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(i) &lt;&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/manip/endl.html">endl</a>;</div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;                    <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/program/exit.html">exit</a>(1);</div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;                }</div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;                results.push_back(result);</div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;            }</div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;            found = <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;            <span class="keywordflow">break</span>;</div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;        }</div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;    }</div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160; </div>
+<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;    <span class="keywordflow">if</span> (required &amp;&amp; !found) {</div>
+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">cerr</a> &lt;&lt; <span class="stringliteral">&quot;ERROR: argument &#39;&quot;</span> &lt;&lt; argument &lt;&lt; <span class="stringliteral">&quot;&#39; required and not found.&quot;</span> &lt;&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/manip/endl.html">endl</a>;</div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/program/exit.html">exit</a>(1);</div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;    }</div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160; </div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;    <span class="keywordflow">if</span> (found) {</div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;        <span class="comment">/*</span></div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="comment">        cerr &lt;&lt; &quot;parsed argument &#39;&quot; &lt;&lt; argument &lt;&lt; &quot;&#39; successfully:&quot;;</span></div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="comment">        for (unsigned int i = 0; i &lt; results.size(); i++) {</span></div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="comment">            cerr &lt;&lt; &quot; &quot; &lt;&lt; results.at(i);</span></div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="comment">        }</span></div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="comment">        cerr &lt;&lt; endl;</span></div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="comment">        */</span></div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;    }</div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;    <span class="keywordflow">return</span> found;</div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;}</div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160; </div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;<span class="keywordtype">bool</span> get_argument_vector(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> arguments, <span class="keywordtype">string</span> argument, <span class="keywordtype">bool</span> required, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;results);</div>
+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160; </div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;<span class="keywordtype">bool</span> get_argument(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> arguments, <span class="keywordtype">string</span> argument, <span class="keywordtype">bool</span> required, <span class="keywordtype">string</span> &amp;result);</div>
+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160; </div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;<span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt;</div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;<span class="keywordtype">bool</span> get_argument(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> arguments, <span class="keywordtype">string</span> argument, <span class="keywordtype">bool</span> required, T &amp;result) {</div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;    <span class="keywordtype">bool</span> found = <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/size.html">size</a>(); i++) {</div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;        <span class="keywordflow">if</span> (argument.<a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string/compare.html">compare</a>(arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(i)) == 0) {</div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;            <span class="keywordflow">if</span> ( !(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_stringstream.html">stringstream</a>(arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(++i)) &gt;&gt; result) ) {</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;                <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">cerr</a> &lt;&lt; <span class="stringliteral">&quot;ERROR: invalid argument &#39;&quot;</span> &lt;&lt; argument &lt;&lt; <span class="stringliteral">&quot;&#39;: &quot;</span> &lt;&lt; arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(i) &lt;&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/manip/endl.html">endl</a>;</div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;                <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/program/exit.html">exit</a>(1);</div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;            }</div>
+<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;            found = <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;            <span class="keywordflow">break</span>;</div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;        }</div>
+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;    }</div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160; </div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    <span class="keywordflow">if</span> (required &amp;&amp; !found) {</div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">cerr</a> &lt;&lt; <span class="stringliteral">&quot;ERROR: argument &#39;&quot;</span> &lt;&lt; argument &lt;&lt; <span class="stringliteral">&quot;&#39; required and not found.&quot;</span> &lt;&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/manip/endl.html">endl</a>;</div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/program/exit.html">exit</a>(1);</div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    }</div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160; </div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;    <span class="keywordflow">if</span> (found) {</div>
+<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;<span class="comment">//        cerr &lt;&lt; &quot;parsed argument &#39;&quot; &lt;&lt; argument &lt;&lt; &quot;&#39; successfully: &quot; &lt;&lt; result &lt;&lt; endl;</span></div>
+<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;    }</div>
+<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;    <span class="keywordflow">return</span> found;</div>
+<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;}</div>
+<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160; </div>
+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160; </div>
+<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;<span class="keyword">template</span> &lt;<span class="keyword">typename</span> T1, <span class="keyword">typename</span> T2&gt;</div>
+<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;<span class="keywordtype">bool</span> get_arguments(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> arguments, <span class="keywordtype">string</span> argument, <span class="keywordtype">bool</span> required, T1 &amp;result1, T2 &amp;result2) {</div>
+<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;    <span class="keywordtype">bool</span> found = <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/size.html">size</a>(); i++) {</div>
+<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;        <span class="keywordflow">if</span> (argument.<a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string/compare.html">compare</a>(arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(i)) == 0) {</div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;            <span class="keywordflow">if</span> ( !(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_stringstream.html">stringstream</a>(arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(++i)) &gt;&gt; result1) ) {</div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;                <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">cerr</a> &lt;&lt; <span class="stringliteral">&quot;ERROR: invalid argument &#39;&quot;</span> &lt;&lt; argument &lt;&lt; <span class="stringliteral">&quot;&#39;: &quot;</span> &lt;&lt; arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(i) &lt;&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/manip/endl.html">endl</a>;</div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;                <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/program/exit.html">exit</a>(1);</div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;            }</div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;            <span class="keywordflow">if</span> ( !(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_stringstream.html">stringstream</a>(arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(++i)) &gt;&gt; result2) ) {</div>
+<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;                <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">cerr</a> &lt;&lt; <span class="stringliteral">&quot;ERROR: invalid argument &#39;&quot;</span> &lt;&lt; argument &lt;&lt; <span class="stringliteral">&quot;&#39;: &quot;</span> &lt;&lt; arguments.<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector/at.html">at</a>(i) &lt;&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/manip/endl.html">endl</a>;</div>
+<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;                <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/program/exit.html">exit</a>(1);</div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;            }</div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;            found = <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;            <span class="keywordflow">break</span>;</div>
+<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;        }</div>
+<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;    }</div>
+<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160; </div>
+<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;    <span class="keywordflow">if</span> (required &amp;&amp; !found) {</div>
+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">cerr</a> &lt;&lt; <span class="stringliteral">&quot;ERROR: argument &#39;&quot;</span> &lt;&lt; argument &lt;&lt; <span class="stringliteral">&quot;&#39; required and not found.&quot;</span> &lt;&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/manip/endl.html">endl</a>;</div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/program/exit.html">exit</a>(1);</div>
+<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;    }</div>
+<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160; </div>
+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;    <span class="keywordflow">if</span> (found) {</div>
+<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;<span class="comment">//        cerr &lt;&lt; &quot;parsed argument &#39;&quot; &lt;&lt; argument &lt;&lt; &quot;&#39; successfully: &quot; &lt;&lt; result1 &lt;&lt; &quot; &quot; &lt;&lt; result2 &lt;&lt; endl;</span></div>
+<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;    }</div>
+<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;    <span class="keywordflow">return</span> found;</div>
+<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;}</div>
+<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160; </div>
+<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt; string &gt;</a></div></div>
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+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="header">
+  <div class="headertitle">
+<div class="title">CNN_Edge Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>accumulate_times</b>(float &amp;total_forward_time, float &amp;total_backward_time, float &amp;total_weight_update_time) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>alter_edge_type</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>batch_size</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>best_scale</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>best_velocity</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>best_velocity_scale</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>best_weights</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>check_output_update</b>(const vector&lt; vector&lt; vector&lt; float &gt; &gt; &gt; &amp;output, const vector&lt; vector&lt; vector&lt; float &gt; &gt; &gt; &amp;input, float value, float weight, float previous_output, int batch_number, int in_y, int in_x, int out_y, int out_x) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>check_weight_update</b>(const vector&lt; vector&lt; vector&lt; float &gt; &gt; &gt; &amp;input, const vector&lt; vector&lt; vector&lt; float &gt; &gt; &gt; &amp;input_deltas, float delta, float previous_delta, float weight_update, float previous_weight_update, int batch_number, int out_y, int out_x, int in_y, int in_x) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>CNN_Edge</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>CNN_Edge</b>(CNN_Node *_input_node, CNN_Node *_output_node, bool _fixed, int _innovation_number, int _type) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>connects</b>(int n1, int n2) const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>disable</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>disabled</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>edge_id</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enable</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>equals</b>(CNN_Edge *other) const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>exact_id</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>filter_size</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>filter_x</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>filter_y</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>fixed</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>forward_visit</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forward_visited</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>genome_id</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_batch_size</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_filter_size</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_filter_x</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_filter_y</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_input_innovation_number</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_input_node</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_output_innovation_number</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_output_node</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_scale</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_type</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weight</b>(int i) const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weight_update</b>(int i) const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>has_nan</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>has_zero_best_weight</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>has_zero_weight</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_weights</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_node</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_node_innovation_number</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_disabled</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_filter_correct</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_forward_visited</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_identical</b>(const CNN_Edge *other, bool testing_checkpoint) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_reverse_filter_x</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reverse_filter_y</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_reverse_visited</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>needs_init</b>() const (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>needs_initialization</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator&lt;&lt;</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>operator&gt;&gt;</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_node</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_node_innovation_number</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>previous_velocity</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>previous_velocity_scale</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print</b>(ostream &amp;out) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_statistics</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>propagate_backward</b>(bool training, float mu, float learning_rate, float epsilon) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>propagate_backward_time</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>propagate_forward</b>(bool training, bool accumulate_test_statistics, float epsilon, float alpha, bool perform_dropout, float hidden_dropout_probability, minstd_rand0 &amp;generator) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>propagate_forward_time</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>propagate_weight_count</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset_times</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_velocities</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>resize</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reverse_filter_x</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reverse_filter_y</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reverse_visit</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reverse_visited</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>save_best_weights</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>scale</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_needs_init</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_nodes</b>(const vector&lt; CNN_Node * &gt; nodes) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_pools</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_unvisited</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights_to_best</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>type</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>update_batch_size</b>(int new_batch_size) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>update_weight</b>(int i, float diff) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>update_weights</b>(float mu, float learning_rate, float weight_decay) (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>weight_update_time</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>weight_updates</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>weights</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>x_pool_offset</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>x_pools</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>y_pool_offset</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>y_pools</b> (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~CNN_Edge</b>() (defined in <a class="el" href="class_c_n_n___edge.html">CNN_Edge</a>)</td><td class="entry"><a class="el" href="class_c_n_n___edge.html">CNN_Edge</a></td><td class="entry"></td></tr>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: CNN_Edge Class Reference</title>
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+<script type="text/javascript" src="dynsections.js"></script>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_c_n_n___edge-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">CNN_Edge Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a393992439d3fa9f5b8303bdddd37a905"><td class="memItemLeft" align="right" valign="top"><a id="a393992439d3fa9f5b8303bdddd37a905"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>CNN_Edge</b> (<a class="el" href="class_c_n_n___node.html">CNN_Node</a> *_input_node, <a class="el" href="class_c_n_n___node.html">CNN_Node</a> *_output_node, bool _fixed, int _innovation_number, int _type)</td></tr>
+<tr class="separator:a393992439d3fa9f5b8303bdddd37a905"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0ca269427c5dcf8a18176f5f84e46de0"><td class="memItemLeft" align="right" valign="top"><a id="a0ca269427c5dcf8a18176f5f84e46de0"></a>
+<a class="el" href="class_c_n_n___edge.html">CNN_Edge</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>copy</b> () const</td></tr>
+<tr class="separator:a0ca269427c5dcf8a18176f5f84e46de0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5890de3d1e265af4652f0c06960606d8"><td class="memItemLeft" align="right" valign="top"><a id="a5890de3d1e265af4652f0c06960606d8"></a>
+bool&#160;</td><td class="memItemRight" valign="bottom"><b>equals</b> (<a class="el" href="class_c_n_n___edge.html">CNN_Edge</a> *other) const</td></tr>
+<tr class="separator:a5890de3d1e265af4652f0c06960606d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adc7eb1c61f7dca12b641d6bd3c074764"><td class="memItemLeft" align="right" valign="top"><a id="adc7eb1c61f7dca12b641d6bd3c074764"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_type</b> () const</td></tr>
+<tr class="separator:adc7eb1c61f7dca12b641d6bd3c074764"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>has_nan</b> () const</td></tr>
+<tr class="separator:a235115dbbc633422419eab97c0aaa485"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1e106cf86f525d34bde7e46284a92f05"><td class="memItemLeft" align="right" valign="top"><a id="a1e106cf86f525d34bde7e46284a92f05"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>reset_times</b> ()</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>accumulate_times</b> (float &amp;total_forward_time, float &amp;total_backward_time, float &amp;total_weight_update_time)</td></tr>
+<tr class="separator:a62b7b235e66053c76a2336d0e6910f23"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>set_needs_init</b> ()</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_filter_size</b> () const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_filter_x</b> () const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_filter_y</b> () const</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>print</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out)</td></tr>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>batch_size</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>best_epoch</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>best_validation_error</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>best_validation_predictions</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>check_gradients</b>(const ImagesInterface &amp;images) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>checkpoint_filename</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_c_n_n___genome.html#ae18524655bb0300fe3668d865d5c0df6">CNN_Genome</a>(string filename, bool is_checkpoint)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>CNN_Genome</b>(istream &amp;in, bool is_checkpoint) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_c_n_n___genome.html#ae4b107989d96112f5a911706d1e907d4">CNN_Genome</a>(int _generation_id, int _padding, int _number_training_images, int _number_validation_images, int _number_test_images, int seed, int _max_epochs, bool _reset_weights, int velocity_reset, float _mu, float _mu_delta, float _learning_rate, float _learning_rate_delta, float _weight_decay, float _weight_decay_delta, int _batch_size, float _epsilon, float _alpha, float _input_dropout_probability, float _hidden_dropout_probability, const vector&lt; CNN_Node * &gt; &amp;_nodes, const vector&lt; CNN_Edge * &gt; &amp;_edges)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>disable_edge</b>(int edge_position) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>edges</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>epoch</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>epsilon</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>equals</b>(CNN_Genome *other) const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>evaluate</b>(const ImagesInterface &amp;images, vector&lt; vector&lt; float &gt; &gt; &amp;predictions) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>evaluate</b>(const ImagesInterface &amp;images, const vector&lt; long &gt; &amp;order, float &amp;total_error, int &amp;correct_predictions, bool perform_backprop, bool accumulate_test_statistics) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>evaluate</b>(string progress_name, const ImagesInterface &amp;images, float &amp;total_error, int &amp;correct_predictions) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>evaluate_images</b>(const ImagesInterface &amp;images, const vector&lt; int &gt; &amp;batch, vector&lt; vector&lt; float &gt; &gt; &amp;predictions, int offset) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>evaluate_images</b>(const ImagesInterface &amp;images, const vector&lt; int &gt; &amp;batch, bool training, float &amp;total_error, int &amp;correct_predictions, bool accumulate_test_statistics) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>evaluate_large_images</b>(const LargeImages &amp;images, string output_directory) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>evaluate_test</b>(const ImagesInterface &amp;test_images) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>exact_id</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generated_by_map</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generation_id</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generator</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>genome_id</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_alpha</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_batch_size</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_best_epoch</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_best_validation_error</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_best_validation_predictions</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_best_validation_rate</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_disabled_edges</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_disabled_nodes</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_edge</b>(int edge_position) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_edge_copies</b>(vector&lt; CNN_Edge * &gt; &amp;edge_copies) const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_edges</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_epoch</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_exact_id</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_expanded_prediction_matrix</b>(const MultiImagesInterface &amp;images, int image_number, int stride, int prediction_class, vector&lt; vector&lt; float &gt; &gt; &amp;extended_prediction_matrix) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_generated_by</b>(string type) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_generation_id</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_genome_id</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_hidden_dropout_probability</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_initial_learning_rate</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_initial_mu</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_initial_weight_decay</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_input_dropout_probability</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_learning_rate</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_learning_rate_delta</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_max_epochs</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_mu</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_mu_delta</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_node</b>(int node_position) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_node_copies</b>(vector&lt; CNN_Node * &gt; &amp;node_copies) const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_nodes</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_edges</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_enabled_convolutional_edges</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_enabled_edges</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_enabled_nodes</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_enabled_pooling_edges</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_input_nodes</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_nodes</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_softmax_nodes</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_test_images</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_training_images</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_validation_images</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_operations_estimate</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_padding</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_prediction_matrix</b>(const MultiImagesInterface &amp;images, int image_number, int stride, vector&lt; vector&lt; vector&lt; float &gt; &gt; &gt; &amp;prediction_matrix) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_reachable_edges</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_reachable_hidden_nodes</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_reachable_nodes</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_test_error</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_test_predictions</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_test_rate</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_training_error</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_training_predictions</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_training_rate</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_velocity_reset</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_version</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_version_str</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weight_decay</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weight_decay_delta</b>() const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>hidden_dropout_probability</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_learning_rate</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_mu</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_weight_decay</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_dropout_probability</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_nodes</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_identical</b>(CNN_Genome *other, bool testing_checkpoint) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>learning_rate</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>learning_rate_delta</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>max_epochs</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>mu</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>mu_delta</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>name</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>nodes</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normal_distribution</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_test_images</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>number_training_images</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_validation_images</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_filename</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>padding</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print_graphviz</b>(ostream &amp;out) const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_progress</b>(ostream &amp;out, string progress_name, float total_error, int correct_predictions, int number_images) const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print_results</b>(ostream &amp;out) const (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>progress_function</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>read</b>(istream &amp;infile) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(bool _reset_weights) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_weights</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>resize_edges_around_node</b>(int node_position) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sanity_check</b>(int type) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>save_to_best</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_checkpoint_filename</b>(string _checkpoint_filename) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_generated_by</b>(string type) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_name</b>(string _name) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_output_filename</b>(string _output_filename) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_progress_function</b>(int(*_progress_function)(float)) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_to_best</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>softmax_nodes</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>started_from_checkpoint</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>stochastic_backpropagation</b>(const ImagesInterface &amp;training_images, int training_resize, const ImagesInterface &amp;validation_images) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>stochastic_backpropagation</b>(const ImagesInterface &amp;training_images, const ImagesInterface &amp;validation_images) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>test_error</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>test_predictions</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>training_error</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>training_predictions</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>velocity_reset</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>version_str</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>visit_nodes</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>weight_decay</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>weight_decay_delta</b> (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write</b>(ostream &amp;outfile) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_to_file</b>(string filename) (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~CNN_Genome</b>() (defined in <a class="el" href="class_c_n_n___genome.html">CNN_Genome</a>)</td><td class="entry"><a class="el" href="class_c_n_n___genome.html">CNN_Genome</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
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+</html>
diff --git a/docs/html/class_c_n_n___genome.html b/docs/html/class_c_n_n___genome.html
new file mode 100644
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>evaluate_test</b> (const <a class="el" href="class_images_interface.html">ImagesInterface</a> &amp;test_images)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>set_name</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> _name)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>write</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;outfile)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>write_to_file</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> filename)</td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>generated_by_map</b></td></tr>
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+int(*&#160;</td><td class="memItemRight" valign="bottom"><b>progress_function</b> )(float)</td></tr>
+<tr class="separator:af767929c34570ff9528f1a12a792fad7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>cnn/<a class="el" href="cnn__genome_8hxx_source.html">cnn_genome.hxx</a></li>
+<li>cnn/cnn_genome.cxx</li>
+</ul>
+</div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">CNN_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_c_n_n___node.html">CNN_Node</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>accumulate_times</b>(float &amp;total_input_time, float &amp;total_output_time) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>add_input</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_output</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>add_weight_count</b>(int _weight_count) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>apply_dropout</b>(float *values, float *gradients, bool perform_dropout, bool accumulate_test_statistics, float dropout_probability, minstd_rand0 &amp;generator) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>apply_relu</b>(float *values, float *gradients) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backpropagate_batch_normalization</b>(bool training, float mu, float learning_rate, float epsilon) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>backpropagate_relu</b>(float *errors, float *gradients) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>batch_mean</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>batch_normalize</b>(bool training, bool accumulating_test_statistics, float epsilon, float alpha) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>batch_size</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>batch_std_dev</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>batch_variance</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>best_beta</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>best_gamma</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>best_running_mean</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>best_running_variance</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>beta</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>CNN_Node</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>CNN_Node</b>(int _innovation_number, float _depth, int _batch_size, int _input_size_x, int _input_size_y, int type) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>disable</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>disable_input</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>disable_output</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>disabled</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>divide_test_statistics</b>(int number_batches) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enable</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>errors_in</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>errors_out</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>exact_id</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>forward_visit</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forward_visited</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>gamma</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>genome_id</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_batch_size</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_errors_in</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_errors_out</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_inputs_fired</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_inputs</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_outputs</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_outputs_fired</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_pool_gradients</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_relu_gradients</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_size_x</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_size_y</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_value_in</b>(int batch_number, int y, int x) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_value_out</b>(int batch_number, int y, int x) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_values_in</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_values_out</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weight_count</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>has_nan</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(bool training, bool accumulate_test_statistics, float epsilon, float alpha, bool perform_dropout, float hidden_dropout_probability, minstd_rand0 &amp;generator) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired_time</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>inverse_variance</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_disabled</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_fixed</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_forward_visited</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_hidden</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_identical</b>(const CNN_Node *other, bool testing_checkpoint) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_input</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_output</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_reverse_visited</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_softmax</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>modify_size_x</b>(int change) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>modify_size_y</b>(int change) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>needs_init</b>() const (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>needs_initialization</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_id</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator&lt;&lt;</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>operator&gt;&gt;</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(bool training, float mu, float learning_rate, float epsilon) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired_time</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>pool_gradients</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>previous_velocity_beta</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>previous_velocity_gamma</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print</b>(ostream &amp;out) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_batch_statistics</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print_statistics</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_statistics</b>(const float *values, const float *errors, const float *gradients) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>relu_gradients</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_times</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset_velocities</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_weight_count</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>resize_arrays</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reverse_visit</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reverse_visited</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>running_mean</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>running_variance</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>save_best_weights</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_error_in</b>(int batch_number, int y, int x, float error) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_error_out</b>(int batch_number, int y, int x, float error) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_unvisited</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_value_in</b>(int batch_number, int y, int x, float value) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_value_out</b>(int batch_number, int y, int x, float value) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_values</b>(const ImagesInterface &amp;images, const vector&lt; int &gt; &amp;batch, int channel, bool perform_dropout, bool accumulate_test_statistics, float input_dropout_probability, minstd_rand0 &amp;generator) (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights_to_best</b>() (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>size_x</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>size_y</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_c_n_n___node.html">CNN_Node</a>)</td><td class="entry"><a class="el" href="class_c_n_n___node.html">CNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+     onmouseover="return searchBox.OnSearchSelectShow()"
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+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="class_consolidated_statistics-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">ConsolidatedStatistics Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a1dedb8fe0ebec15343eb8cc43dd13919"><td class="memItemLeft" align="right" valign="top"><a id="a1dedb8fe0ebec15343eb8cc43dd13919"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>ConsolidatedStatistics</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> _run_type)</td></tr>
+<tr class="separator:a1dedb8fe0ebec15343eb8cc43dd13919"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5f7c3c4a15770ba410ed702502a69e14"><td class="memItemLeft" align="right" valign="top"><a id="a5f7c3c4a15770ba410ed702502a69e14"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><b>to_string_min</b> ()</td></tr>
+<tr class="separator:a5f7c3c4a15770ba410ed702502a69e14"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a516c9b01f648ebc06ec77e77dbbc92ba"><td class="memItemLeft" align="right" valign="top"><a id="a516c9b01f648ebc06ec77e77dbbc92ba"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><b>to_string_avg</b> ()</td></tr>
+<tr class="separator:a516c9b01f648ebc06ec77e77dbbc92ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a712f35c52e6099b119aac3c9be392792"><td class="memItemLeft" align="right" valign="top"><a id="a712f35c52e6099b119aac3c9be392792"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><b>to_string_max</b> ()</td></tr>
+<tr class="separator:a712f35c52e6099b119aac3c9be392792"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a440db85e7e7056589c3b337d1a480e75"><td class="memItemLeft" align="right" valign="top"><a id="a440db85e7e7056589c3b337d1a480e75"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><b>run_type</b></td></tr>
+<tr class="separator:a440db85e7e7056589c3b337d1a480e75"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4e279cbf435a754e54ca6a670f5050f3"><td class="memItemLeft" align="right" valign="top"><a id="a4e279cbf435a754e54ca6a670f5050f3"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>dfm_min</b></td></tr>
+<tr class="separator:a4e279cbf435a754e54ca6a670f5050f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a389b132b9af4877b5895befaecc0808a"><td class="memItemLeft" align="right" valign="top"><a id="a389b132b9af4877b5895befaecc0808a"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>dfm_avg</b></td></tr>
+<tr class="separator:a389b132b9af4877b5895befaecc0808a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a602d1d945c8ddf957c7b58146a39bb4b"><td class="memItemLeft" align="right" valign="top"><a id="a602d1d945c8ddf957c7b58146a39bb4b"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>dfm_max</b></td></tr>
+<tr class="separator:a602d1d945c8ddf957c7b58146a39bb4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+<li>mpi/run_statistics.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_corpus-members.html b/docs/html/class_corpus-members.html
new file mode 100644
index 00000000..aed6f488
--- /dev/null
+++ b/docs/html/class_corpus-members.html
@@ -0,0 +1,122 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">Corpus Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_corpus.html">Corpus</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="class_corpus.html#a084591c7f27b8ad55bc68266fe461161">all_parameter_names</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_corpus.html#aaf5714da66d6475437fdae9fe262bb6a">batch_size</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>Corpus</b>() (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>denormalize</b>(string field_name, double value) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>export_sent_series</b>(const vector&lt; int &gt; &amp;series_indexes, int word_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>export_series_by_name</b>(string field_name, vector&lt; vector&lt; double &gt; &gt; &amp;exported_series) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_corpus.html#a1559311071b5de22e15561a39225ec12">export_test_series</a>(int word_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_corpus.html#a241439045ad1a83d6104b4350961e1b3">export_training_series</a>(int word_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_corpus.html#acdc26dc71f4664b914bc6f4ddd08f5c7">filenames</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generate_from_arguments</b>(const vector&lt; string &gt; &amp;arguments) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generate_test</b>(const vector&lt; string &gt; &amp;_test_filenames, const vector&lt; string &gt; &amp;_input_parameter_names, const vector&lt; string &gt; &amp;_output_parameter_names) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_input_parameter_names</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_normalize_avgs</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_normalize_maxs</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_normalize_mins</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_normalize_std_devs</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_normalize_type</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_inputs</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_outputs</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_series</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_output_parameter_names</b>() const (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_set</b>(int32_t i) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_corpus.html#a21a1934fd5493a82fc572226639525c6">input_parameter_names</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_corpus.html#aef1a06e5a764a0ffa2ecc8b4df042692">load_word_library</a>()</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_avg_std_dev</b>() (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_avg_std_dev</b>(const map&lt; string, double &gt; &amp;_normalize_avgs, const map&lt; string, double &gt; &amp;_normalize_std_devs, const map&lt; string, double &gt; &amp;_normalize_mins, const map&lt; string, double &gt; &amp;_normalize_maxs) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_avgs</b> (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_maxs</b> (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_min_max</b>() (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_min_max</b>(const map&lt; string, double &gt; &amp;_normalize_mins, const map&lt; string, double &gt; &amp;_normalize_maxs) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_mins</b> (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_std_devs</b> (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_type</b> (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_corpus.html#ac7b85b5b0a376016c63b58200aa03e19">output_parameter_names</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_corpus.html#a96d8a8ed499eb739f08d8d7536008688">sent_series</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_test_indexes</b>(const vector&lt; int &gt; &amp;_test_indexes) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_training_indexes</b>(const vector&lt; int &gt; &amp;_training_indexes) (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_corpus.html#a5bfd2fe992d2f34b735b21196b9bd18b">test_indexes</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_corpus.html#acc4af3ddc788396aede04a140e15f8b6">training_indexes</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_corpus.html#a7c44a0b8ab422b3fbe30e165e6f1bd34">vocab</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_corpus.html#ad420d9f3cecbc7ea4af0ff68a37e386d">word_index</a></td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_corpus.html#a45ee2e625bab4930a20b8448d0e168b0">write_sentence_series_sets</a>(string base_filename)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~Corpus</b>() (defined in <a class="el" href="class_corpus.html">Corpus</a>)</td><td class="entry"><a class="el" href="class_corpus.html">Corpus</a></td><td class="entry"></td></tr>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Corpus Class Reference</title>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
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+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="separator:a45ee2e625bab4930a20b8448d0e168b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a241439045ad1a83d6104b4350961e1b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+static <a class="el" href="class_corpus.html">Corpus</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>generate_from_arguments</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;arguments)</td></tr>
+<tr class="separator:aacb92512dd5c353c1085f9dcd303d440"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a184bd2800418e018f0650a9f59fbc4cb"><td class="memItemLeft" align="right" valign="top"><a id="a184bd2800418e018f0650a9f59fbc4cb"></a>
+static <a class="el" href="class_corpus.html">Corpus</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>generate_test</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;_test_filenames, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;_input_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;_output_parameter_names)</td></tr>
+<tr class="separator:a184bd2800418e018f0650a9f59fbc4cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:aef1a06e5a764a0ffa2ecc8b4df042692"><td class="memItemLeft" align="right" valign="top"><a id="aef1a06e5a764a0ffa2ecc8b4df042692"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#aef1a06e5a764a0ffa2ecc8b4df042692">load_word_library</a> ()</td></tr>
+<tr class="memdesc:aef1a06e5a764a0ffa2ecc8b4df042692"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads the filenames, word index and the vocabulary of the files. <br /></td></tr>
+<tr class="separator:aef1a06e5a764a0ffa2ecc8b4df042692"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:aaf5714da66d6475437fdae9fe262bb6a"><td class="memItemLeft" align="right" valign="top"><a id="aaf5714da66d6475437fdae9fe262bb6a"></a>
+uint32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#aaf5714da66d6475437fdae9fe262bb6a">batch_size</a></td></tr>
+<tr class="memdesc:aaf5714da66d6475437fdae9fe262bb6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifices the batches in which the dataset is to be divided into chunks. <br /></td></tr>
+<tr class="separator:aaf5714da66d6475437fdae9fe262bb6a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8f5019313c7f0e7067755f79df4dcbe5"><td class="memItemLeft" align="right" valign="top"><a id="a8f5019313c7f0e7067755f79df4dcbe5"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_type</b></td></tr>
+<tr class="separator:a8f5019313c7f0e7067755f79df4dcbe5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acdc26dc71f4664b914bc6f4ddd08f5c7"><td class="memItemLeft" align="right" valign="top"><a id="acdc26dc71f4664b914bc6f4ddd08f5c7"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#acdc26dc71f4664b914bc6f4ddd08f5c7">filenames</a></td></tr>
+<tr class="memdesc:acdc26dc71f4664b914bc6f4ddd08f5c7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stores all the filenames including training and testing. <br /></td></tr>
+<tr class="separator:acdc26dc71f4664b914bc6f4ddd08f5c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acc4af3ddc788396aede04a140e15f8b6"><td class="memItemLeft" align="right" valign="top"><a id="acc4af3ddc788396aede04a140e15f8b6"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#acc4af3ddc788396aede04a140e15f8b6">training_indexes</a></td></tr>
+<tr class="memdesc:acc4af3ddc788396aede04a140e15f8b6"><td class="mdescLeft">&#160;</td><td class="mdescRight">stores the training index of the filenames. <br /></td></tr>
+<tr class="separator:acc4af3ddc788396aede04a140e15f8b6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5bfd2fe992d2f34b735b21196b9bd18b"><td class="memItemLeft" align="right" valign="top"><a id="a5bfd2fe992d2f34b735b21196b9bd18b"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#a5bfd2fe992d2f34b735b21196b9bd18b">test_indexes</a></td></tr>
+<tr class="memdesc:a5bfd2fe992d2f34b735b21196b9bd18b"><td class="mdescLeft">&#160;</td><td class="mdescRight">stores the testing index of the filenames. <br /></td></tr>
+<tr class="separator:a5bfd2fe992d2f34b735b21196b9bd18b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a21a1934fd5493a82fc572226639525c6"><td class="memItemLeft" align="right" valign="top"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#a21a1934fd5493a82fc572226639525c6">input_parameter_names</a></td></tr>
+<tr class="memdesc:a21a1934fd5493a82fc572226639525c6"><td class="mdescLeft">&#160;</td><td class="mdescRight">stores the input parameter names of the filenames.  <a href="class_corpus.html#a21a1934fd5493a82fc572226639525c6">More...</a><br /></td></tr>
+<tr class="separator:a21a1934fd5493a82fc572226639525c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac7b85b5b0a376016c63b58200aa03e19"><td class="memItemLeft" align="right" valign="top"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#ac7b85b5b0a376016c63b58200aa03e19">output_parameter_names</a></td></tr>
+<tr class="memdesc:ac7b85b5b0a376016c63b58200aa03e19"><td class="mdescLeft">&#160;</td><td class="mdescRight">stores the input parameter names of the filenames.  <a href="class_corpus.html#ac7b85b5b0a376016c63b58200aa03e19">More...</a><br /></td></tr>
+<tr class="separator:ac7b85b5b0a376016c63b58200aa03e19"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a084591c7f27b8ad55bc68266fe461161"><td class="memItemLeft" align="right" valign="top"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#a084591c7f27b8ad55bc68266fe461161">all_parameter_names</a></td></tr>
+<tr class="memdesc:a084591c7f27b8ad55bc68266fe461161"><td class="mdescLeft">&#160;</td><td class="mdescRight">stores the input parameter names of the filenames.  <a href="class_corpus.html#a084591c7f27b8ad55bc68266fe461161">More...</a><br /></td></tr>
+<tr class="separator:a084591c7f27b8ad55bc68266fe461161"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a96d8a8ed499eb739f08d8d7536008688"><td class="memItemLeft" align="right" valign="top"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_sentence_series.html">SentenceSeries</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#a96d8a8ed499eb739f08d8d7536008688">sent_series</a></td></tr>
+<tr class="memdesc:a96d8a8ed499eb739f08d8d7536008688"><td class="mdescLeft">&#160;</td><td class="mdescRight">stores the Sentence series used in the filenames.  <a href="class_corpus.html#a96d8a8ed499eb739f08d8d7536008688">More...</a><br /></td></tr>
+<tr class="separator:a96d8a8ed499eb739f08d8d7536008688"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0a851ff0d48771c3b6f2573d7476966a"><td class="memItemLeft" align="right" valign="top"><a id="a0a851ff0d48771c3b6f2573d7476966a"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_mins</b></td></tr>
+<tr class="separator:a0a851ff0d48771c3b6f2573d7476966a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a22f825861bbb3139717013a6301e3add"><td class="memItemLeft" align="right" valign="top"><a id="a22f825861bbb3139717013a6301e3add"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_maxs</b></td></tr>
+<tr class="separator:a22f825861bbb3139717013a6301e3add"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2344bdd0b80ef4fdb30c2f67ef1a1ea0"><td class="memItemLeft" align="right" valign="top"><a id="a2344bdd0b80ef4fdb30c2f67ef1a1ea0"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_avgs</b></td></tr>
+<tr class="separator:a2344bdd0b80ef4fdb30c2f67ef1a1ea0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaaee4f6927310905cf812db4fc2e268a"><td class="memItemLeft" align="right" valign="top"><a id="aaaee4f6927310905cf812db4fc2e268a"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_std_devs</b></td></tr>
+<tr class="separator:aaaee4f6927310905cf812db4fc2e268a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad420d9f3cecbc7ea4af0ff68a37e386d"><td class="memItemLeft" align="right" valign="top"><a id="ad420d9f3cecbc7ea4af0ff68a37e386d"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#ad420d9f3cecbc7ea4af0ff68a37e386d">word_index</a></td></tr>
+<tr class="memdesc:ad420d9f3cecbc7ea4af0ff68a37e386d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps the index to word string of the word series in a particular filename. <br /></td></tr>
+<tr class="separator:ad420d9f3cecbc7ea4af0ff68a37e386d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7c44a0b8ab422b3fbe30e165e6f1bd34"><td class="memItemLeft" align="right" valign="top"><a id="a7c44a0b8ab422b3fbe30e165e6f1bd34"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_corpus.html#a7c44a0b8ab422b3fbe30e165e6f1bd34">vocab</a></td></tr>
+<tr class="memdesc:a7c44a0b8ab422b3fbe30e165e6f1bd34"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps the word string to the word series in a particular filename. <br /></td></tr>
+<tr class="separator:a7c44a0b8ab422b3fbe30e165e6f1bd34"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a1559311071b5de22e15561a39225ec12"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1559311071b5de22e15561a39225ec12">&#9670;&nbsp;</a></span>export_test_series()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Corpus::export_test_series </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>word_offset</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>inputs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>outputs</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Exports <a class="el" href="class_corpus.html">Corpus</a> Dataset to be used for testing in <a class="el" href="class_r_n_n.html">RNN</a> genome. </p>
+<p>This exports the time series marked as test series by the test_indexes vector.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">series_indexes</td><td>are the indexes of the input parameters to be used in the dataset </td></tr>
+    <tr><td class="paramname">word_offset</td><td>is used to predict the after how many words, the predictions to be done in the future. </td></tr>
+    <tr><td class="paramname">inputs</td><td>is the data used for testing in the <a class="el" href="class_r_n_n.html">RNN</a> genome </td></tr>
+    <tr><td class="paramname">outpus</td><td>is the data used for testing in the <a class="el" href="class_r_n_n.html">RNN</a> genome </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a241439045ad1a83d6104b4350961e1b3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a241439045ad1a83d6104b4350961e1b3">&#9670;&nbsp;</a></span>export_training_series()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Corpus::export_training_series </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>word_offset</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>inputs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>outputs</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Exports <a class="el" href="class_corpus.html">Corpus</a> Dataset to be used for training in <a class="el" href="class_r_n_n.html">RNN</a> genome. </p>
+<p>This exports the time series marked as training series by the training_indexes vector.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">series_indexes</td><td>are the indexes of the input parameters to be used in the dataset </td></tr>
+    <tr><td class="paramname">word_offset</td><td>is used to predict the after how many words, the predictions to be done in the future. </td></tr>
+    <tr><td class="paramname">inputs</td><td>is the data used for training in the <a class="el" href="class_r_n_n.html">RNN</a> genome </td></tr>
+    <tr><td class="paramname">outpus</td><td>is the data used for training in the <a class="el" href="class_r_n_n.html">RNN</a> genome </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a45ee2e625bab4930a20b8448d0e168b0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a45ee2e625bab4930a20b8448d0e168b0">&#9670;&nbsp;</a></span>write_sentence_series_sets()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Corpus::write_sentence_series_sets </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>base_filename</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Generates the csv data file. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">base_filename</td><td>is the filename to be used. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a084591c7f27b8ad55bc68266fe461161"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a084591c7f27b8ad55bc68266fe461161">&#9670;&nbsp;</a></span>all_parameter_names</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt;<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&gt; Corpus::all_parameter_names</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>stores the input parameter names of the filenames. </p>
+<p>stores the unique words used in the filenames. </p>
+
+</div>
+</div>
+<a id="a21a1934fd5493a82fc572226639525c6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a21a1934fd5493a82fc572226639525c6">&#9670;&nbsp;</a></span>input_parameter_names</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt;<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&gt; Corpus::input_parameter_names</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>stores the input parameter names of the filenames. </p>
+<p>stores the unique words used in the filenames. </p>
+
+</div>
+</div>
+<a id="ac7b85b5b0a376016c63b58200aa03e19"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac7b85b5b0a376016c63b58200aa03e19">&#9670;&nbsp;</a></span>output_parameter_names</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt;<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&gt; Corpus::output_parameter_names</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>stores the input parameter names of the filenames. </p>
+<p>stores the unique words used in the filenames. </p>
+
+</div>
+</div>
+<a id="a96d8a8ed499eb739f08d8d7536008688"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a96d8a8ed499eb739f08d8d7536008688">&#9670;&nbsp;</a></span>sent_series</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt;<a class="el" href="class_sentence_series.html">SentenceSeries</a>*&gt; Corpus::sent_series</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>stores the Sentence series used in the filenames. </p>
+<p>Each file is divided into sentences and word series is made for each word in the sentence. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>word_series/<a class="el" href="word__series_8hxx_source.html">word_series.hxx</a></li>
+<li>word_series/word_series.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_delta___node-members.html b/docs/html/class_delta___node-members.html
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--- /dev/null
+++ b/docs/html/class_delta___node-members.html
@@ -0,0 +1,152 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
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+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">Delta_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_delta___node.html">Delta_Node</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>alpha</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>beta1</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>beta2</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_alpha</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_beta1</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_beta2</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_r_bias</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_v</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_z_hat_bias</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_z_prev</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>Delta_Node</b>(int _innovation_number, int _type, double _depth) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_fired</b>(int time, double error) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gradient</b>(string gradient_name) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng1_1, double range) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired</b>(int time, double incoming_output) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_r</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ld_z</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_z_cap</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(int time, double delta) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_gradient</b>(string gradient_name) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>r</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>r_bias</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset</b>(int _series_length) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>try_update_deltas</b>(int time) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>v</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>z_cap</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>z_hat_bias</b> (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~Delta_Node</b>() (defined in <a class="el" href="class_delta___node.html">Delta_Node</a>)</td><td class="entry"><a class="el" href="class_delta___node.html">Delta_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Delta_Node Class Reference</title>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_delta___node-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Delta_Node Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for Delta_Node:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_delta___node.png" usemap="#Delta_5FNode_map" alt=""/>
+  <map id="Delta_5FNode_map" name="Delta_5FNode_map">
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_lamarckian</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double mu, double sigma)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_xavier</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng1_1, double range)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_kaiming</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double range)</td></tr>
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+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="delta__node_8hxx_source.html">delta_node.hxx</a></li>
+<li>rnn/delta_node.cxx</li>
+</ul>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">ENARC_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_h_prev</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_rw</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_w1</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_w2</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_w3</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_w4</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_w5</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_w6</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_w7</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_w8</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_zw</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ENARC_Node</b>(int _innovation_number, int _type, double _depth) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int time, double error) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradient</b>(string gradient_name) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng1_1, double range) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int time, double incoming_output) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>l_d_z</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>l_w1_z</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>l_w2_w1</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>l_w3_w1</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>l_w4_w2</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>l_w5_w3</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>l_w6_w1</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>l_w7_w3</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>l_w8_w3</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int time, double delta) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print_gradient</b>(string gradient_name) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int _series_length) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>rw</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>try_update_deltas</b>(int time) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>w1</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>w1_z</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>w2</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>w2_w1</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>w3</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>w3_w1</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>w4</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>w4_w2</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>w5</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>w5_w3</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>w6</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>w6_w1</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>w7</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>w7_w3</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>w8</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>w8_w3</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>z</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>zw</b> (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~ENARC_Node</b>() (defined in <a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_r_c___node.html">ENARC_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="title">ENAS_DAG_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>, including all inherited members.</p>
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+  <tr><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#ae73d6fdfcaa9f0ae60628e9529c4373d">activation_derivative</a>(double value, double input, int act_operator)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
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+  <tr><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#a127cf43bd1e8014d9fb951cf26c9b737">d_weights</a></td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#a6df39cdee9de29977d989383c312afeb">d_zw</a></td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ENAS_DAG_Node</b>(int _innovation_number, int _type, double _depth) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_fired</b>(int time, double error) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#afac6a8241afd3cae5c8d7955e8518c59">get_gradient</a>(string gradient_name)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng1_1, double range) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired</b>(int time, double incoming_output) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#a0b7939ba90a6db0ba2dda9731eefc38a">l_Nodes</a></td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#ae96b8e1d3d379d097aff2d879ca25fdb">Nodes</a></td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int time, double delta) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#a0676683aa9a220611f4e99a8a44e6e96">print_gradient</a>(string gradient_name)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int _series_length) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#a96691f6c8700d1443045691b435db9b4">rw</a></td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>try_update_deltas</b>(int time) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#a169c584563029fdec7d51390c6bef838">weights</a></td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html#a543c626068b87030fb140a4ebeb38f30">zw</a></td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~ENAS_DAG_Node</b>() (defined in <a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: ENAS_DAG_Node Class Reference</title>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_e_n_a_s___d_a_g___node-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">ENAS_DAG_Node Class Reference</div>  </div>
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+<div class="contents">
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+Inheritance diagram for ENAS_DAG_Node:</div>
+<div class="dyncontent">
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+  <img src="class_e_n_a_s___d_a_g___node.png" usemap="#ENAS_5FDAG_5FNode_map" alt=""/>
+  <map id="ENAS_5FDAG_5FNode_map" name="ENAS_5FDAG_5FNode_map">
+<area href="class_r_n_n___node___interface.html" alt="RNN_Node_Interface" shape="rect" coords="0,0,132,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ad2e4167a9eef0cebb3204926e8f6631d"><td class="memItemLeft" align="right" valign="top"><a id="ad2e4167a9eef0cebb3204926e8f6631d"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>ENAS_DAG_Node</b> (int _innovation_number, int _type, double _depth)</td></tr>
+<tr class="separator:ad2e4167a9eef0cebb3204926e8f6631d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_lamarckian</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double mu, double sigma)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_xavier</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng1_1, double range)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_kaiming</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double range)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_uniform_random</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng)</td></tr>
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+<tr class="separator:afac6a8241afd3cae5c8d7955e8518c59"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0676683aa9a220611f4e99a8a44e6e96"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_e_n_a_s___d_a_g___node.html#a0676683aa9a220611f4e99a8a44e6e96">print_gradient</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> gradient_name)</td></tr>
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+<tr class="separator:a0676683aa9a220611f4e99a8a44e6e96"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a58e17b40715e32a28a57c2ec34cd1997"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_e_n_a_s___d_a_g___node.html#a58e17b40715e32a28a57c2ec34cd1997">activation</a> (double value, int act_operator)</td></tr>
+<tr class="memdesc:a58e17b40715e32a28a57c2ec34cd1997"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gives the activations of the node in the memory cell in the network.  <a href="class_e_n_a_s___d_a_g___node.html#a58e17b40715e32a28a57c2ec34cd1997">More...</a><br /></td></tr>
+<tr class="separator:a58e17b40715e32a28a57c2ec34cd1997"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae73d6fdfcaa9f0ae60628e9529c4373d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_e_n_a_s___d_a_g___node.html#ae73d6fdfcaa9f0ae60628e9529c4373d">activation_derivative</a> (double value, double input, int act_operator)</td></tr>
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+<tr class="separator:ae73d6fdfcaa9f0ae60628e9529c4373d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>input_fired</b> (int time, double incoming_output)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>try_update_deltas</b> (int time)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>reset</b> (int _series_length)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>write_to_stream</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>write_to_stream</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_depth</b> () const</td></tr>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>equals</b> (<a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *other) const</td></tr>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>is_reachable</b> () const</td></tr>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>is_enabled</b> () const</td></tr>
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+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a58e17b40715e32a28a57c2ec34cd1997"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a58e17b40715e32a28a57c2ec34cd1997">&#9670;&nbsp;</a></span>activation()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double ENAS_DAG_Node::activation </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>value</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>act_operator</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Gives the activations of the node in the memory cell in the network. </p>
+<p><br  />
+</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">value</td><td>is the output of the node after multiplying weights </td></tr>
+    <tr><td class="paramname">act_operator</td><td>is the actiation type : sigmoid, tanh, swish, identity</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>output of the node after applying activation </dd></dl>
+
+</div>
+</div>
+<a id="ae73d6fdfcaa9f0ae60628e9529c4373d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae73d6fdfcaa9f0ae60628e9529c4373d">&#9670;&nbsp;</a></span>activation_derivative()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double ENAS_DAG_Node::activation_derivative </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>value</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>input</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>act_operator</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Gives the activations derviative of the node in the memory cell in the network. </p>
+<p><br  />
+</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">input</td><td>is the input of the node before multiplying weights </td></tr>
+    <tr><td class="paramname">value</td><td>is the output of the node after multiplying weights </td></tr>
+    <tr><td class="paramname">act_operator</td><td>is the actiation type : sigmoid, tanh, swish, identity</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>output derivative of the node after applying activation </dd></dl>
+
+</div>
+</div>
+<a id="afac6a8241afd3cae5c8d7955e8518c59"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afac6a8241afd3cae5c8d7955e8518c59">&#9670;&nbsp;</a></span>get_gradient()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double ENAS_DAG_Node::get_gradient </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>gradient_name</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Gives the gradients in essence the deriviative of the weights in the memory cell in the network. </p>
+<p><br  />
+</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">gradient_name</td><td>in the weight name.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>gradient. </dd></dl>
+
+</div>
+</div>
+<a id="a0676683aa9a220611f4e99a8a44e6e96"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0676683aa9a220611f4e99a8a44e6e96">&#9670;&nbsp;</a></span>print_gradient()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void ENAS_DAG_Node::print_gradient </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>gradient_name</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Gives the gradients in essence the deriviative of the weights in the memory cell in the network. </p>
+<p><br  />
+</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">gradient_name</td><td>in the weight name.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>prints the gradient. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a366df37adbb4bc2824846ef60b6707e3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a366df37adbb4bc2824846ef60b6707e3">&#9670;&nbsp;</a></span>d_h_prev</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt;double&gt; ENAS_DAG_Node::d_h_prev</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gradient of the previous output i.e. </p>
+<p>t-1 in the memory cell. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="enas__dag__node_8hxx_source.html">enas_dag_node.hxx</a></li>
+<li>rnn/enas_dag_node.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
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+$(function() {
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+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">EXACT Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_e_x_a_c_t.html">EXACT</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_edge</b>(CNN_Genome *child, CNN_Node *node1, CNN_Node *node2, int edge_type) (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>alpha_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>alpha_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>batch_size_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>batch_size_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>best_predictions_genome</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>best_predictions_genome_id</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>create_child</b>() (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>create_mutation</b>() (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>crossover_alter_edge_type</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>crossover_rate</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>edge_add</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>edge_alter_type</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>edge_disable</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>edge_enable</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>edge_innovation_count</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>edge_split</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>epsilon</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>EXACT</b>(const ImagesInterface &amp;training_images, const ImagesInterface &amp;validation_images, const ImagesInterface &amp;test_images, int _padding, int _population_size, int _max_epochs, bool _use_sfmp, bool _use_node_operations, int _max_genomes, string _output_directory, string _search_name, bool _reset_weights) (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generate_individual</b>() (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generate_initial_hyperparameters</b>(float &amp;mu, float &amp;mu_delta, float &amp;learning_rate, float &amp;learning_rate_delta, float &amp;weight_decay, float &amp;weight_decay_delta, float &amp;alpha, int &amp;velocity_reset, float &amp;input_dropout_probability, float &amp;hidden_dropout_probability, int &amp;batch_size) (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generate_simplex_hyperparameters</b>(float &amp;mu, float &amp;mu_delta, float &amp;learning_rate, float &amp;learning_rate_delta, float &amp;weight_decay, float &amp;weight_decay_delta, float &amp;alpha, int &amp;velocity_reset, float &amp;input_dropout_probability, float &amp;hidden_dropout_probability, int &amp;batch_size) (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generated_from_map</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generator</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>genomes</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>genomes_generated</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_best_genome</b>() (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_genome</b>(int i) (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_id</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_inserted_genomes</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_max_genomes</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_genomes</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_training_images</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_output_directory</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_search_name</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_test_filename</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_training_filename</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_validation_filename</b>() const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>hidden_dropout_probability_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>hidden_dropout_probability_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>id</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>image_channels</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>image_cols</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>image_rows</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_alpha_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_alpha_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_batch_size_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_batch_size_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_hidden_dropout_probability_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_hidden_dropout_probability_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_input_dropout_probability_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_input_dropout_probability_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_learning_rate_delta_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_learning_rate_delta_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_learning_rate_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_learning_rate_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_mu_delta_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_mu_delta_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_mu_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_mu_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_velocity_reset_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_velocity_reset_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_weight_decay_delta_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_weight_decay_delta_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initial_weight_decay_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_weight_decay_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_dropout_probability_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_dropout_probability_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>insert_genome</b>(CNN_Genome *genome) (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>inserted_from_map</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inserted_genomes</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_identical</b>(EXACT *other, bool testing_checkpoint) (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>learning_rate_delta_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>learning_rate_delta_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>learning_rate_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>learning_rate_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>less_fit_parent_crossover</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>max_epochs</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>max_genomes</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>more_fit_parent_crossover</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>mu_delta_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>mu_delta_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>mu_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>mu_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_add</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_change_size</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_change_size_x</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_change_size_y</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_disable</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_enable</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_innovation_count</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_merge</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_split</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normal_distribution</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>number_classes</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_mutations</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>number_test_images</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_training_images</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>number_validation_images</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_directory</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>padding</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>population_contains</b>(CNN_Genome *genome) const (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>population_size</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset_weights</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_weights_chance</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>rng_float</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>rng_long</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>search_name</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>test_filename</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>training_filename</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>use_node_operations</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>use_sfmp</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>validation_filename</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>weight_decay_max</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>weight_decay_min</b> (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_hyperparameters_header</b>() (defined in <a class="el" href="class_e_x_a_c_t.html">EXACT</a>)</td><td class="entry"><a class="el" href="class_e_x_a_c_t.html">EXACT</a></td><td class="entry"></td></tr>
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+<div class="title">EXAMM Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_edge_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>add_node_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_recurrent_edge_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>attempt_edge_insert</b>(vector&lt; RNN_Edge * &gt; &amp;child_edges, vector&lt; RNN_Node_Interface * &gt; &amp;child_nodes, RNN_Edge *edge, RNN_Edge *second_edge, bool set_enabled) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>attempt_node_insert</b>(vector&lt; RNN_Node_Interface * &gt; &amp;child_nodes, const RNN_Node_Interface *node, const vector&lt; double &gt; &amp;new_weights) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>attempt_recurrent_edge_insert</b>(vector&lt; RNN_Recurrent_Edge * &gt; &amp;child_recurrent_edges, vector&lt; RNN_Node_Interface * &gt; &amp;child_nodes, RNN_Recurrent_Edge *recurrent_edge, RNN_Recurrent_Edge *second_edge, bool set_enabled) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>bp_iterations</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>check_weight_initialize_validity</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>clone_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>crossover</b>(RNN_Genome *p1, RNN_Genome *p2) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>disable_edge_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>disable_node_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>dropout_probability</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>edge_innovation_count</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enable_edge_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enable_node_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>epigenetic_weights</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>EXAMM</b>(int32_t _population_size, int32_t _number_islands, int32_t _max_genomes, int32_t _extinction_event_generation_number, int32_t _islands_to_exterminate, string _island_ranking_method, string _repopulation_method, int32_t _repopulation_mutations, bool _repeat_extinction, string _speciation_method, double _species_threshold, double _fitness_threshold, double _neat_c1, double _neat_c2, double _neat_c3, const vector&lt; string &gt; &amp;_input_parameter_names, const vector&lt; string &gt; &amp;_output_parameter_names, string _normalize_type, const map&lt; string, double &gt; &amp;_normalize_mins, const map&lt; string, double &gt; &amp;_normalize_maxs, const map&lt; string, double &gt; &amp;_normalize_avgs, const map&lt; string, double &gt; &amp;_normalize_std_devs, WeightType _weight_initialize, WeightType _weight_inheritance, WeightType _mutated_component_weight, int32_t _bp_iterations, double _learning_rate, bool _use_high_threshold, double _high_threshold, bool _use_low_threshold, double _low_threshold, bool _use_dropout, double _dropout_probability, int32_t _min_recurrent_depth, int32_t _max_recurrent_depth, bool _use_regression, string _output_directory, RNN_Genome *seed_genome, bool _start_filled) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>extinction_event_generation_number</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>fitness_threshold</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generate_for_transfer_learning</b>(string file_name, int extra_inputs, int extra_outputs) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generate_genome</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generated_counts</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generated_from_map</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generator</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>genome_file_name</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>genomes</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_best_fitness</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_best_genome</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_output_directory</b>() const (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_random_node_type</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_recurrent_depth_dist</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_worst_fitness</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_worst_genome</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>high_threshold</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_parameter_names</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>insert_genome</b>(RNN_Genome *genome) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>inserted_counts</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inserted_from_map</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>island_ranking_method</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>learning_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>less_fit_crossover_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>log_file</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>low_threshold</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>max_genomes</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>max_recurrent_depth</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>memory_log</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>merge_node_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>min_recurrent_depth</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>more_fit_crossover_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>mutate</b>(int32_t max_mutations, RNN_Genome *p1) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>mutated_component_weight</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>neat_c1</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>neat_c2</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>neat_c3</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_innovation_count</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_avgs</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_maxs</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_mins</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_std_devs</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_type</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_inputs</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>number_islands</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_outputs</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>op_log_file</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>op_log_ordering</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_directory</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_parameter_names</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>population_size</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>possible_node_types</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>repeat_extinction</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>repopulation_method</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>repopulation_mutations</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>rng_0_1</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>rng_crossover_weight</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_possible_node_types</b>(vector&lt; string &gt; possible_node_type_strings) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>speciation_method</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>speciation_strategy</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>species_threshold</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>split_edge_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>split_node_rate</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>start_filled</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>startClock</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_bp_epochs</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>update_log</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>use_dropout</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>use_high_threshold</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>use_low_threshold</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>use_regression</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>weight_inheritance</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>weight_initialize</b> (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_memory_log</b>(string filename) (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~EXAMM</b>() (defined in <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>)</td><td class="entry"><a class="el" href="class_e_x_a_m_m.html">EXAMM</a></td><td class="entry"></td></tr>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: EXAMM Class Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<a href="#pub-methods">Public Member Functions</a> &#124;
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+<a href="class_e_x_a_m_m-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">EXAMM Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="memitem:a6a5ab3247fb1b1dc0804095181a690e8"><td class="memItemLeft" align="right" valign="top"><a id="a6a5ab3247fb1b1dc0804095181a690e8"></a>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>print</b> ()</td></tr>
+<tr class="separator:a513a581a6f62588c171a020769a00721"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>update_log</b> ()</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>write_memory_log</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> filename)</td></tr>
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+<tr class="separator:a18b82d31a77efaf4ab29c3f1b35c9d05"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_random_node_type</b> ()</td></tr>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>insert_genome</b> (<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *genome)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>mutate</b> (int32_t max_mutations, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *p1)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>attempt_node_insert</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> * &gt; &amp;child_nodes, const <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *node, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;new_weights)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>attempt_edge_insert</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a> * &gt; &amp;child_edges, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> * &gt; &amp;child_nodes, <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a> *edge, <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a> *second_edge, bool set_enabled)</td></tr>
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+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>crossover</b> (<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *p1, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *p2)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_best_fitness</b> ()</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_worst_fitness</b> ()</td></tr>
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+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>get_best_genome</b> ()</td></tr>
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+</table><table class="memberdecls">
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
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+</table>
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">GRU_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_g_r_u___node.html">GRU_Node</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_h_bias</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_h_prev</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_hu</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_hw</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_r_bias</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_ru</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_rw</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_z_bias</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_zu</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_zw</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int time, double error) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradient</b>(string gradient_name) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>GRU_Node</b>(int _innovation_number, int _type, double _depth) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>h_bias</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>h_tanh</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>hu</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>hw</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng1_1, double range) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired</b>(int time, double incoming_output) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_h_tanh</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ld_r</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_z</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(int time, double delta) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_gradient</b>(string gradient_name) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>r</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>r_bias</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset</b>(int _series_length) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ru</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>rw</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>try_update_deltas</b>(int time) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>z</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>z_bias</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>zu</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>zw</b> (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~GRU_Node</b>() (defined in <a class="el" href="class_g_r_u___node.html">GRU_Node</a>)</td><td class="entry"><a class="el" href="class_g_r_u___node.html">GRU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_g_r_u___node-members.html">List of all members</a>  </div>
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+<div class="title">GRU_Node Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for GRU_Node:</div>
+<div class="dyncontent">
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+  <img src="class_g_r_u___node.png" usemap="#GRU_5FNode_map" alt=""/>
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+<hr/>The documentation for this class was generated from the following files:<ul>
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+<li>rnn/gru_node.cxx</li>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">Image Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_image.html">Image</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>channels</b> (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>classification</b> (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_classification</b>() const (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_pixel</b>(int z, int y, int x) const (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_pixel_avg</b>(vector&lt; float &gt; &amp;channel_avgs) const (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_pixel_variance</b>(const vector&lt; float &gt; &amp;channel_avgs, vector&lt; float &gt; &amp;channel_variances) const (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>height</b> (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>Image</b>(ifstream &amp;infile, int _channels, int _width, int _height, int _padding, int _classification, const Images *_images) (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>images</b> (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>Images</b> (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>padding</b> (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>pixels</b> (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print</b>(ostream &amp;out) (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>scale_0_1</b>() (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>width</b> (defined in <a class="el" href="class_image.html">Image</a>)</td><td class="entry"><a class="el" href="class_image.html">Image</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~ImageInterface</b>()=0 (defined in <a class="el" href="class_image_interface.html">ImageInterface</a>)</td><td class="entry"><a class="el" href="class_image_interface.html">ImageInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Image Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_image-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Image Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
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+<div class="dyncontent">
+ <div class="center">
+  <img src="class_image.png" usemap="#Image_map" alt=""/>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>scale_0_1</b> ()</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>get_pixel_avg</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; float &gt; &amp;channel_avgs) const</td></tr>
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+<tr class="separator:adb6a48efc25c7c12df5984c578e131d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>padding</b></td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>channels</b></td></tr>
+<tr class="separator:a73572ed4b7f15054c5a598c6aabffd86"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>height</b></td></tr>
+<tr class="separator:a51df43db420c9c0b57536cb2dd36de5c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>width</b></td></tr>
+<tr class="separator:ab8d12f635013c04159cd4d3d972bac88"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afffa25f14f8c9aca3e6014c71fb33937"><td class="memItemLeft" align="right" valign="top"><a id="afffa25f14f8c9aca3e6014c71fb33937"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>classification</b></td></tr>
+<tr class="separator:afffa25f14f8c9aca3e6014c71fb33937"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a42870ee0359c95f19672220f40c02ade"><td class="memItemLeft" align="right" valign="top"><a id="a42870ee0359c95f19672220f40c02ade"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; uint8_t &gt; &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>pixels</b></td></tr>
+<tr class="separator:a42870ee0359c95f19672220f40c02ade"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af8e17e1591540036cbd27ee309df7cff"><td class="memItemLeft" align="right" valign="top"><a id="af8e17e1591540036cbd27ee309df7cff"></a>
+const <a class="el" href="class_images.html">Images</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>images</b></td></tr>
+<tr class="separator:af8e17e1591540036cbd27ee309df7cff"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a29a8da4b8508c35f965394bec8b4af16"><td class="memItemLeft" align="right" valign="top"><a id="a29a8da4b8508c35f965394bec8b4af16"></a>
+class&#160;</td><td class="memItemRight" valign="bottom"><b>Images</b></td></tr>
+<tr class="separator:a29a8da4b8508c35f965394bec8b4af16"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>image_tools/<a class="el" href="image__set_8hxx_source.html">image_set.hxx</a></li>
+<li>image_tools/image_set.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
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+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<script type="text/javascript" src="menudata.js"></script>
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  <div class="headertitle">
+<div class="title">ImageInterface Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_image_interface.html">ImageInterface</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_classification</b>() const =0 (defined in <a class="el" href="class_image_interface.html">ImageInterface</a>)</td><td class="entry"><a class="el" href="class_image_interface.html">ImageInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print</b>(ostream &amp;out)=0 (defined in <a class="el" href="class_image_interface.html">ImageInterface</a>)</td><td class="entry"><a class="el" href="class_image_interface.html">ImageInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~ImageInterface</b>()=0 (defined in <a class="el" href="class_image_interface.html">ImageInterface</a>)</td><td class="entry"><a class="el" href="class_image_interface.html">ImageInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: ImageInterface Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="class_image_interface-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">ImageInterface Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for ImageInterface:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_image_interface.png" usemap="#ImageInterface_map" alt=""/>
+  <map id="ImageInterface_map" name="ImageInterface_map">
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+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a8185d7f7ef306f65f833b1045fc6f17e"><td class="memItemLeft" align="right" valign="top"><a id="a8185d7f7ef306f65f833b1045fc6f17e"></a>
+virtual int&#160;</td><td class="memItemRight" valign="bottom"><b>get_classification</b> () const =0</td></tr>
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+<tr class="separator:a9eec1a62dae9f3aad32046fbf47ad601"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>image_tools/<a class="el" href="image__set__interface_8hxx_source.html">image_set_interface.hxx</a></li>
+<li>image_tools/large_image_set.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+</iframe>
+</div>
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">Images Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_images.html">Images</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>calculate_avg_std_dev</b>() (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>channel_avg</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>channel_std_dev</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>channels</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>class_sizes</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>filename</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_average</b>() const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_channel_avg</b>(int channel) const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_channel_std_dev</b>(int channel) const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_class_size</b>(int i) const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_classification</b>(int image) const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_filename</b>() const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_channels</b>() const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_image_height</b>() const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_width</b>() const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_classes</b>() const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_images</b>() const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_pixel</b>(int image, int z, int y, int x) const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_std_dev</b>() const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>had_error</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>height</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>images</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>Images</b>(string binary_filename, int _padding) (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>Images</b>(string binary_filename, int _padding, const vector&lt; float &gt; &amp;_channeL_avg, const vector&lt; float &gt; &amp;channel_std_dev) (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>loaded_correctly</b>() const (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_classes</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>number_images</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>padding</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>read_images</b>(string binary_filename) (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>width</b> (defined in <a class="el" href="class_images.html">Images</a>)</td><td class="entry"><a class="el" href="class_images.html">Images</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Images Class Reference</title>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_images-members.html">List of all members</a>  </div>
+  <div class="headertitle">
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>channels</b></td></tr>
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+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>image_tools/<a class="el" href="image__set_8hxx_source.html">image_set.hxx</a></li>
+<li>image_tools/image_set.cxx</li>
+</ul>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">ImagesInterface Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_images_interface.html">ImagesInterface</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_average</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_channel_avg</b>(int channel) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_channel_std_dev</b>(int channel) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_class_size</b>(int i) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_classification</b>(int image) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_filename</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_channels</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_image_height</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_width</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_classes</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_images</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_pixel</b>(int image, int z, int y, int x) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_std_dev</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<tr class="separator:a3a26b620cf600922d3572c41d7d43c38"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>image_tools/<a class="el" href="image__set__interface_8hxx_source.html">image_set_interface.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
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+/* @license-end */</script>
+<div id="main-nav"></div>
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+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">Island Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_island.html">Island</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#abb653cd2fc60819a0ab2c204930a7e8a">been_erased</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a7c3b5331a7ee1dff6206a855e6b5c8b8">copy_random_genome</a>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, RNN_Genome **genome)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#ac49713b90f9110f52c5083540448df8d">copy_two_random_genomes</a>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, RNN_Genome **genome1, RNN_Genome **genome2)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>do_population_check</b>(int line, int initial_size) (defined in <a class="el" href="class_island.html">Island</a>)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#ae46bdcec5ad489d18a4bbd9f22d9cabc">erase_again</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a733a2accb72bce21194747fd3c1ee819">erase_island</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#aa676d36c51b69868c42d08fbcf6733c8">erased</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a054b583b4364d07d8c7819daf9bcdb47">erased_generation_id</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#a857212729b8405e77721f499d0b85513">FILLED</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a41c1201d69104c49438c97dbc8c93db2">genomes</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#aea94baab5d4faa09454131236baf187c">get_best_fitness</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#abf327f29018863338f4eb351c1f4a2c8">get_best_genome</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_erase_again_num</b>() (defined in <a class="el" href="class_island.html">Island</a>)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#acb96603328b5dff91b41470424e7494e">get_erased_generation_id</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_genomes</b>() (defined in <a class="el" href="class_island.html">Island</a>)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#ac5cae801aac1403f3523a7949e415417">get_max_size</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#a8c941beca36c75f2c4fc2fd0d2dfc2c5">get_status</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#ac135f9b252512f04afcd7f8c2f3f621f">get_worst_fitness</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#a2f5d1d504a6bc11d0d63cf9d4bea5a63">get_worst_genome</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a859a134cc183618af109dd69b85f2955">id</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#acb98955eb9f69a25c7e3af81f4d5cc5c">INITIALIZING</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a105174354a7313b3c6520892a3de653e">insert_genome</a>(RNN_Genome *genome)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#a42a519a1626c5db6004173529a5e2627">is_full</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a4d7e730b2c3e9cc53ae3205b1fbe2930">is_initializing</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#a79525b52b34ef3674b837072b5d34d19">is_repopulating</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a32f068675c8a7f999cb18464d00e8119">Island</a>(int32_t id, int32_t max_size)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#a02fc26cf7fb95d750c501494b855707d">Island</a>(int32_t id, vector&lt; RNN_Genome * &gt; genomes)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a24a6f4f8d54cb448ccd3be82385c2e02">latest_generation_id</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#a5973473a3aad42bec285f02522cacce8">max_size</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#a9d092c81f7d97c72972dfbdf6fb7cb14">print</a>(string indent=&quot;&quot;)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#a26a2558e99586f017335aa0ef4612758">REPOPULATING</a></td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_erase_again_num</b>() (defined in <a class="el" href="class_island.html">Island</a>)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_latest_generation_id</b>(int32_t _latest_generation_id) (defined in <a class="el" href="class_island.html">Island</a>)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island.html#abee9ebff7f0da46fa3dde1718f675689">set_status</a>(int32_t status_to_set)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island.html#a41f743dc56fa3c26f1e709222416cadf">size</a>()</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>status</b> (defined in <a class="el" href="class_island.html">Island</a>)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>structure_map</b> (defined in <a class="el" href="class_island.html">Island</a>)</td><td class="entry"><a class="el" href="class_island.html">Island</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Island Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+<script type="text/javascript" src="menudata.js"></script>
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+});
+/* @license-end */</script>
+<div id="main-nav"></div>
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+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
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+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-static-attribs">Static Public Attributes</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_island-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Island Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="separator:a32f068675c8a7f999cb18464d00e8119"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a02fc26cf7fb95d750c501494b855707d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initializes an island filled the supplied genomes.  <a href="class_island.html#a02fc26cf7fb95d750c501494b855707d">More...</a><br /></td></tr>
+<tr class="separator:a02fc26cf7fb95d750c501494b855707d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aea94baab5d4faa09454131236baf187c"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#aea94baab5d4faa09454131236baf187c">get_best_fitness</a> ()</td></tr>
+<tr class="memdesc:aea94baab5d4faa09454131236baf187c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the fitness of the best genome in the island.  <a href="class_island.html#aea94baab5d4faa09454131236baf187c">More...</a><br /></td></tr>
+<tr class="separator:aea94baab5d4faa09454131236baf187c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac135f9b252512f04afcd7f8c2f3f621f"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#ac135f9b252512f04afcd7f8c2f3f621f">get_worst_fitness</a> ()</td></tr>
+<tr class="memdesc:ac135f9b252512f04afcd7f8c2f3f621f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the fitness of the worst genome in the island.  <a href="class_island.html#ac135f9b252512f04afcd7f8c2f3f621f">More...</a><br /></td></tr>
+<tr class="separator:ac135f9b252512f04afcd7f8c2f3f621f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abf327f29018863338f4eb351c1f4a2c8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#abf327f29018863338f4eb351c1f4a2c8">get_best_genome</a> ()</td></tr>
+<tr class="memdesc:abf327f29018863338f4eb351c1f4a2c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the best genomme in the island.  <a href="class_island.html#abf327f29018863338f4eb351c1f4a2c8">More...</a><br /></td></tr>
+<tr class="separator:abf327f29018863338f4eb351c1f4a2c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2f5d1d504a6bc11d0d63cf9d4bea5a63"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a2f5d1d504a6bc11d0d63cf9d4bea5a63">get_worst_genome</a> ()</td></tr>
+<tr class="memdesc:a2f5d1d504a6bc11d0d63cf9d4bea5a63"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the worst genomme in the island.  <a href="class_island.html#a2f5d1d504a6bc11d0d63cf9d4bea5a63">More...</a><br /></td></tr>
+<tr class="separator:a2f5d1d504a6bc11d0d63cf9d4bea5a63"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac5cae801aac1403f3523a7949e415417"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#ac5cae801aac1403f3523a7949e415417">get_max_size</a> ()</td></tr>
+<tr class="memdesc:ac5cae801aac1403f3523a7949e415417"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the maximum number of genomes the island can hold.  <a href="class_island.html#ac5cae801aac1403f3523a7949e415417">More...</a><br /></td></tr>
+<tr class="separator:ac5cae801aac1403f3523a7949e415417"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a41f743dc56fa3c26f1e709222416cadf"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a41f743dc56fa3c26f1e709222416cadf">size</a> ()</td></tr>
+<tr class="memdesc:a41f743dc56fa3c26f1e709222416cadf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the size of the island.  <a href="class_island.html#a41f743dc56fa3c26f1e709222416cadf">More...</a><br /></td></tr>
+<tr class="separator:a41f743dc56fa3c26f1e709222416cadf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a42a519a1626c5db6004173529a5e2627"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a42a519a1626c5db6004173529a5e2627">is_full</a> ()</td></tr>
+<tr class="memdesc:a42a519a1626c5db6004173529a5e2627"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns true if the island has <a class="el" href="class_island.html#a5973473a3aad42bec285f02522cacce8" title="The maximum number of genomes in the island.">Island::max_size</a> genomes.  <a href="class_island.html#a42a519a1626c5db6004173529a5e2627">More...</a><br /></td></tr>
+<tr class="separator:a42a519a1626c5db6004173529a5e2627"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4d7e730b2c3e9cc53ae3205b1fbe2930"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a4d7e730b2c3e9cc53ae3205b1fbe2930">is_initializing</a> ()</td></tr>
+<tr class="memdesc:a4d7e730b2c3e9cc53ae3205b1fbe2930"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns true if the island is initializing, i.e., it's size is &lt;= max_size and it hasn't been cleared out for repopulating.  <a href="class_island.html#a4d7e730b2c3e9cc53ae3205b1fbe2930">More...</a><br /></td></tr>
+<tr class="separator:a4d7e730b2c3e9cc53ae3205b1fbe2930"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a79525b52b34ef3674b837072b5d34d19"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a79525b52b34ef3674b837072b5d34d19">is_repopulating</a> ()</td></tr>
+<tr class="memdesc:a79525b52b34ef3674b837072b5d34d19"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns true if the island is repopulating, i.e., it's size is &lt;= max_size and it has been full before but cleared out for repopulation.  <a href="class_island.html#a79525b52b34ef3674b837072b5d34d19">More...</a><br /></td></tr>
+<tr class="separator:a79525b52b34ef3674b837072b5d34d19"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7c3b5331a7ee1dff6206a855e6b5c8b8"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a7c3b5331a7ee1dff6206a855e6b5c8b8">copy_random_genome</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **genome)</td></tr>
+<tr class="memdesc:a7c3b5331a7ee1dff6206a855e6b5c8b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Selects a genome from the island at random and returns a copy of it.  <a href="class_island.html#a7c3b5331a7ee1dff6206a855e6b5c8b8">More...</a><br /></td></tr>
+<tr class="separator:a7c3b5331a7ee1dff6206a855e6b5c8b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac49713b90f9110f52c5083540448df8d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#ac49713b90f9110f52c5083540448df8d">copy_two_random_genomes</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **genome1, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **genome2)</td></tr>
+<tr class="memdesc:ac49713b90f9110f52c5083540448df8d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Selects two different genomes from the island at random and returns copies of them.  <a href="class_island.html#ac49713b90f9110f52c5083540448df8d">More...</a><br /></td></tr>
+<tr class="separator:ac49713b90f9110f52c5083540448df8d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af4b7a1caadd05d62d95ae4f6b2e2d378"><td class="memItemLeft" align="right" valign="top"><a id="af4b7a1caadd05d62d95ae4f6b2e2d378"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>do_population_check</b> (int line, int initial_size)</td></tr>
+<tr class="separator:af4b7a1caadd05d62d95ae4f6b2e2d378"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a105174354a7313b3c6520892a3de653e"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a105174354a7313b3c6520892a3de653e">insert_genome</a> (<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *genome)</td></tr>
+<tr class="memdesc:a105174354a7313b3c6520892a3de653e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inserts a genome into the island.  <a href="class_island.html#a105174354a7313b3c6520892a3de653e">More...</a><br /></td></tr>
+<tr class="separator:a105174354a7313b3c6520892a3de653e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9d092c81f7d97c72972dfbdf6fb7cb14"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a9d092c81f7d97c72972dfbdf6fb7cb14">print</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> indent=&quot;&quot;)</td></tr>
+<tr class="memdesc:a9d092c81f7d97c72972dfbdf6fb7cb14"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prints out the state of this island.  <a href="class_island.html#a9d092c81f7d97c72972dfbdf6fb7cb14">More...</a><br /></td></tr>
+<tr class="separator:a9d092c81f7d97c72972dfbdf6fb7cb14"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a733a2accb72bce21194747fd3c1ee819"><td class="memItemLeft" align="right" valign="top"><a id="a733a2accb72bce21194747fd3c1ee819"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a733a2accb72bce21194747fd3c1ee819">erase_island</a> ()</td></tr>
+<tr class="memdesc:a733a2accb72bce21194747fd3c1ee819"><td class="mdescLeft">&#160;</td><td class="mdescRight">erases the entire island and set the erased_generation_id. <br /></td></tr>
+<tr class="separator:a733a2accb72bce21194747fd3c1ee819"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acb96603328b5dff91b41470424e7494e"><td class="memItemLeft" align="right" valign="top"><a id="acb96603328b5dff91b41470424e7494e"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#acb96603328b5dff91b41470424e7494e">get_erased_generation_id</a> ()</td></tr>
+<tr class="memdesc:acb96603328b5dff91b41470424e7494e"><td class="mdescLeft">&#160;</td><td class="mdescRight">returns the get_erased_generation_id. <br /></td></tr>
+<tr class="separator:acb96603328b5dff91b41470424e7494e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8c941beca36c75f2c4fc2fd0d2dfc2c5"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a8c941beca36c75f2c4fc2fd0d2dfc2c5">get_status</a> ()</td></tr>
+<tr class="separator:a8c941beca36c75f2c4fc2fd0d2dfc2c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abee9ebff7f0da46fa3dde1718f675689"><td class="memItemLeft" align="right" valign="top"><a id="abee9ebff7f0da46fa3dde1718f675689"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#abee9ebff7f0da46fa3dde1718f675689">set_status</a> (int32_t status_to_set)</td></tr>
+<tr class="memdesc:abee9ebff7f0da46fa3dde1718f675689"><td class="mdescLeft">&#160;</td><td class="mdescRight">after erasing the island, sets the island status to repopulating. <br /></td></tr>
+<tr class="separator:abee9ebff7f0da46fa3dde1718f675689"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abb653cd2fc60819a0ab2c204930a7e8a"><td class="memItemLeft" align="right" valign="top"><a id="abb653cd2fc60819a0ab2c204930a7e8a"></a>
+bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#abb653cd2fc60819a0ab2c204930a7e8a">been_erased</a> ()</td></tr>
+<tr class="memdesc:abb653cd2fc60819a0ab2c204930a7e8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">return if this island has been erased before. <br /></td></tr>
+<tr class="separator:abb653cd2fc60819a0ab2c204930a7e8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8a6f5c217a58f9a2b58c00372bea85f2"><td class="memItemLeft" align="right" valign="top"><a id="a8a6f5c217a58f9a2b58c00372bea85f2"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_genomes</b> ()</td></tr>
+<tr class="separator:a8a6f5c217a58f9a2b58c00372bea85f2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acc95dd5cc774123a9b0a24416d090c95"><td class="memItemLeft" align="right" valign="top"><a id="acc95dd5cc774123a9b0a24416d090c95"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>set_latest_generation_id</b> (int32_t _latest_generation_id)</td></tr>
+<tr class="separator:acc95dd5cc774123a9b0a24416d090c95"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab821afe58054f2a256d3bbd5c08fbee0"><td class="memItemLeft" align="right" valign="top"><a id="ab821afe58054f2a256d3bbd5c08fbee0"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><b>get_erase_again_num</b> ()</td></tr>
+<tr class="separator:ab821afe58054f2a256d3bbd5c08fbee0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad0d7c02825f98385aa9ff00ef66e20b5"><td class="memItemLeft" align="right" valign="top"><a id="ad0d7c02825f98385aa9ff00ef66e20b5"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>set_erase_again_num</b> ()</td></tr>
+<tr class="separator:ad0d7c02825f98385aa9ff00ef66e20b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-attribs"></a>
+Static Public Attributes</h2></td></tr>
+<tr class="memitem:acb98955eb9f69a25c7e3af81f4d5cc5c"><td class="memItemLeft" align="right" valign="top"><a id="acb98955eb9f69a25c7e3af81f4d5cc5c"></a>
+const static int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#acb98955eb9f69a25c7e3af81f4d5cc5c">INITIALIZING</a> = 0</td></tr>
+<tr class="memdesc:acb98955eb9f69a25c7e3af81f4d5cc5c"><td class="mdescLeft">&#160;</td><td class="mdescRight">status flag for if the island is initializing. <br /></td></tr>
+<tr class="separator:acb98955eb9f69a25c7e3af81f4d5cc5c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a857212729b8405e77721f499d0b85513"><td class="memItemLeft" align="right" valign="top"><a id="a857212729b8405e77721f499d0b85513"></a>
+const static int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a857212729b8405e77721f499d0b85513">FILLED</a> = 1</td></tr>
+<tr class="memdesc:a857212729b8405e77721f499d0b85513"><td class="mdescLeft">&#160;</td><td class="mdescRight">status flag for if the island is filled. <br /></td></tr>
+<tr class="separator:a857212729b8405e77721f499d0b85513"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a26a2558e99586f017335aa0ef4612758"><td class="memItemLeft" align="right" valign="top"><a id="a26a2558e99586f017335aa0ef4612758"></a>
+const static int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a26a2558e99586f017335aa0ef4612758">REPOPULATING</a> = 2</td></tr>
+<tr class="memdesc:a26a2558e99586f017335aa0ef4612758"><td class="mdescLeft">&#160;</td><td class="mdescRight">status flag for if the island is repopulating. <br /></td></tr>
+<tr class="separator:a26a2558e99586f017335aa0ef4612758"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a859a134cc183618af109dd69b85f2955"><td class="memItemLeft" align="right" valign="top"><a id="a859a134cc183618af109dd69b85f2955"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a859a134cc183618af109dd69b85f2955">id</a></td></tr>
+<tr class="memdesc:a859a134cc183618af109dd69b85f2955"><td class="mdescLeft">&#160;</td><td class="mdescRight">An integer ID for this island. <br /></td></tr>
+<tr class="separator:a859a134cc183618af109dd69b85f2955"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5973473a3aad42bec285f02522cacce8"><td class="memItemLeft" align="right" valign="top"><a id="a5973473a3aad42bec285f02522cacce8"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a5973473a3aad42bec285f02522cacce8">max_size</a></td></tr>
+<tr class="memdesc:a5973473a3aad42bec285f02522cacce8"><td class="mdescLeft">&#160;</td><td class="mdescRight">The maximum number of genomes in the island. <br /></td></tr>
+<tr class="separator:a5973473a3aad42bec285f02522cacce8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a054b583b4364d07d8c7819daf9bcdb47"><td class="memItemLeft" align="right" valign="top"><a id="a054b583b4364d07d8c7819daf9bcdb47"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a054b583b4364d07d8c7819daf9bcdb47">erased_generation_id</a> = -1</td></tr>
+<tr class="memdesc:a054b583b4364d07d8c7819daf9bcdb47"><td class="mdescLeft">&#160;</td><td class="mdescRight">The latest generation id of an erased island, erased_generation_id = largest_generation_id when this island is erased, to prevent deleted genomes get inserted back. <br /></td></tr>
+<tr class="separator:a054b583b4364d07d8c7819daf9bcdb47"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a24a6f4f8d54cb448ccd3be82385c2e02"><td class="memItemLeft" align="right" valign="top"><a id="a24a6f4f8d54cb448ccd3be82385c2e02"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a24a6f4f8d54cb448ccd3be82385c2e02">latest_generation_id</a></td></tr>
+<tr class="memdesc:a24a6f4f8d54cb448ccd3be82385c2e02"><td class="mdescLeft">&#160;</td><td class="mdescRight">The latest generation id of genome being generated, including the ones doing backprop by workers. <br /></td></tr>
+<tr class="separator:a24a6f4f8d54cb448ccd3be82385c2e02"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a41c1201d69104c49438c97dbc8c93db2"><td class="memItemLeft" align="right" valign="top"><a id="a41c1201d69104c49438c97dbc8c93db2"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#a41c1201d69104c49438c97dbc8c93db2">genomes</a></td></tr>
+<tr class="memdesc:a41c1201d69104c49438c97dbc8c93db2"><td class="mdescLeft">&#160;</td><td class="mdescRight">The genomes on this island, stored in sorted order best (front) to worst (back). <br /></td></tr>
+<tr class="separator:a41c1201d69104c49438c97dbc8c93db2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acec5d3319641d6b494157fdb737e0622"><td class="memItemLeft" align="right" valign="top"><a id="acec5d3319641d6b494157fdb737e0622"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/unordered_map.html">unordered_map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>structure_map</b></td></tr>
+<tr class="separator:acec5d3319641d6b494157fdb737e0622"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6cd2fa92f5e9a23dbabc47f050c1837d"><td class="memItemLeft" align="right" valign="top"><a id="a6cd2fa92f5e9a23dbabc47f050c1837d"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><b>status</b></td></tr>
+<tr class="separator:a6cd2fa92f5e9a23dbabc47f050c1837d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae46bdcec5ad489d18a4bbd9f22d9cabc"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#ae46bdcec5ad489d18a4bbd9f22d9cabc">erase_again</a></td></tr>
+<tr class="memdesc:ae46bdcec5ad489d18a4bbd9f22d9cabc"><td class="mdescLeft">&#160;</td><td class="mdescRight"><blockquote class="doxtable">
+<p>The status of this island (either <a class="el" href="class_island.html">Island</a>:INITIALIZING, <a class="el" href="class_island.html#a857212729b8405e77721f499d0b85513" title="status flag for if the island is filled.">Island::FILLED</a> or <a class="el" href="class_island.html#a26a2558e99586f017335aa0ef4612758" title="status flag for if the island is repopulating.">Island::REPOPULATING</a> </p>
+</blockquote>
+ <a href="class_island.html#ae46bdcec5ad489d18a4bbd9f22d9cabc">More...</a><br /></td></tr>
+<tr class="separator:ae46bdcec5ad489d18a4bbd9f22d9cabc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa676d36c51b69868c42d08fbcf6733c8"><td class="memItemLeft" align="right" valign="top"><a id="aa676d36c51b69868c42d08fbcf6733c8"></a>
+bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island.html#aa676d36c51b69868c42d08fbcf6733c8">erased</a></td></tr>
+<tr class="memdesc:aa676d36c51b69868c42d08fbcf6733c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">a flag to track if this islands has been erased <br /></td></tr>
+<tr class="separator:aa676d36c51b69868c42d08fbcf6733c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a32f068675c8a7f999cb18464d00e8119"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a32f068675c8a7f999cb18464d00e8119">&#9670;&nbsp;</a></span>Island() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">Island::Island </td>
+          <td>(</td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>id</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>max_size</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Initializes an island with a given max size. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">max_size</td><td>is the maximum number of genomes in the island. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a02fc26cf7fb95d750c501494b855707d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a02fc26cf7fb95d750c501494b855707d">&#9670;&nbsp;</a></span>Island() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">Island::Island </td>
+          <td>(</td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>id</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * &gt;&#160;</td>
+          <td class="paramname"><em>genomes</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Initializes an island filled the supplied genomes. </p>
+<p>The size of the island will be the size of the supplied genome vector. The island status is set to filled. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a7c3b5331a7ee1dff6206a855e6b5c8b8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7c3b5331a7ee1dff6206a855e6b5c8b8">&#9670;&nbsp;</a></span>copy_random_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Island::copy_random_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rng_0_1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;&#160;</td>
+          <td class="paramname"><em>generator</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **&#160;</td>
+          <td class="paramname"><em>genome</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Selects a genome from the island at random and returns a copy of it. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">rng_0_1</td><td>is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). </td></tr>
+    <tr><td class="paramname">generator</td><td>is the random number generator </td></tr>
+    <tr><td class="paramname">genome</td><td>will be the copied genome, an addresss to a pointer needs to be passed. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ac49713b90f9110f52c5083540448df8d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac49713b90f9110f52c5083540448df8d">&#9670;&nbsp;</a></span>copy_two_random_genomes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Island::copy_two_random_genomes </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rng_0_1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;&#160;</td>
+          <td class="paramname"><em>generator</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **&#160;</td>
+          <td class="paramname"><em>genome1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **&#160;</td>
+          <td class="paramname"><em>genome2</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Selects two different genomes from the island at random and returns copies of them. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">rng_0_1</td><td>is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). </td></tr>
+    <tr><td class="paramname">generator</td><td>is the random number generator </td></tr>
+    <tr><td class="paramname">genome1</td><td>will be the first copied genome, an addresss to a pointer needs to be passed. </td></tr>
+    <tr><td class="paramname">genome2</td><td>will be the second copied genome, an addresss to a pointer needs to be passed. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="aea94baab5d4faa09454131236baf187c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aea94baab5d4faa09454131236baf187c">&#9670;&nbsp;</a></span>get_best_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double Island::get_best_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the fitness of the best genome in the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best fitness of the island </dd></dl>
+
+</div>
+</div>
+<a id="abf327f29018863338f4eb351c1f4a2c8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abf327f29018863338f4eb351c1f4a2c8">&#9670;&nbsp;</a></span>get_best_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * Island::get_best_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the best genomme in the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best genome in the island </dd></dl>
+
+</div>
+</div>
+<a id="ac5cae801aac1403f3523a7949e415417"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac5cae801aac1403f3523a7949e415417">&#9670;&nbsp;</a></span>get_max_size()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Island::get_max_size </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the maximum number of genomes the island can hold. </p>
+<dl class="section return"><dt>Returns</dt><dd>the maximum number of genomes this island can have </dd></dl>
+
+</div>
+</div>
+<a id="a8c941beca36c75f2c4fc2fd0d2dfc2c5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8c941beca36c75f2c4fc2fd0d2dfc2c5">&#9670;&nbsp;</a></span>get_status()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Island::get_status </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the status of the island </dd></dl>
+
+</div>
+</div>
+<a id="ac135f9b252512f04afcd7f8c2f3f621f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac135f9b252512f04afcd7f8c2f3f621f">&#9670;&nbsp;</a></span>get_worst_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double Island::get_worst_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the fitness of the worst genome in the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst fitness of the island </dd></dl>
+
+</div>
+</div>
+<a id="a2f5d1d504a6bc11d0d63cf9d4bea5a63"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f5d1d504a6bc11d0d63cf9d4bea5a63">&#9670;&nbsp;</a></span>get_worst_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * Island::get_worst_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the worst genomme in the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst genome in the island </dd></dl>
+
+</div>
+</div>
+<a id="a105174354a7313b3c6520892a3de653e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a105174354a7313b3c6520892a3de653e">&#9670;&nbsp;</a></span>insert_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Island::insert_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td>
+          <td class="paramname"><em>genome</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Inserts a genome into the island. </p>
+<p>Genomes are inserted in best to worst order genomes[0] will have the best fitness and genomes[size - 1] will have the worst.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">genome</td><td>is the genome to be inserted. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>-1 if not inserted, otherwise the index it was inserted at </dd></dl>
+
+</div>
+</div>
+<a id="a42a519a1626c5db6004173529a5e2627"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a42a519a1626c5db6004173529a5e2627">&#9670;&nbsp;</a></span>is_full()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool Island::is_full </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns true if the island has <a class="el" href="class_island.html#a5973473a3aad42bec285f02522cacce8" title="The maximum number of genomes in the island.">Island::max_size</a> genomes. </p>
+<dl class="section return"><dt>Returns</dt><dd>true if the number of genomes in the island is &gt;= size (although it should never be &gt; size). </dd></dl>
+
+</div>
+</div>
+<a id="a4d7e730b2c3e9cc53ae3205b1fbe2930"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4d7e730b2c3e9cc53ae3205b1fbe2930">&#9670;&nbsp;</a></span>is_initializing()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool Island::is_initializing </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns true if the island is initializing, i.e., it's size is &lt;= max_size and it hasn't been cleared out for repopulating. </p>
+<dl class="section return"><dt>Returns</dt><dd>true if island is initializing. </dd></dl>
+
+</div>
+</div>
+<a id="a79525b52b34ef3674b837072b5d34d19"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a79525b52b34ef3674b837072b5d34d19">&#9670;&nbsp;</a></span>is_repopulating()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool Island::is_repopulating </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns true if the island is repopulating, i.e., it's size is &lt;= max_size and it has been full before but cleared out for repopulation. </p>
+<dl class="section return"><dt>Returns</dt><dd>true if island is repopulating. </dd></dl>
+
+</div>
+</div>
+<a id="a9d092c81f7d97c72972dfbdf6fb7cb14"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9d092c81f7d97c72972dfbdf6fb7cb14">&#9670;&nbsp;</a></span>print()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Island::print </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>indent</em> = <code>&quot;&quot;</code></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Prints out the state of this island. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">indent</td><td>is how much to indent what is printed out </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a41f743dc56fa3c26f1e709222416cadf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a41f743dc56fa3c26f1e709222416cadf">&#9670;&nbsp;</a></span>size()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Island::size </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the size of the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the number of genomes in this island. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ae46bdcec5ad489d18a4bbd9f22d9cabc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae46bdcec5ad489d18a4bbd9f22d9cabc">&#9670;&nbsp;</a></span>erase_again</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Island::erase_again</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p><blockquote class="doxtable">
+<p>The status of this island (either <a class="el" href="class_island.html">Island</a>:INITIALIZING, <a class="el" href="class_island.html#a857212729b8405e77721f499d0b85513" title="status flag for if the island is filled.">Island::FILLED</a> or <a class="el" href="class_island.html#a26a2558e99586f017335aa0ef4612758" title="status flag for if the island is repopulating.">Island::REPOPULATING</a> </p>
+</blockquote>
+</p>
+<p>a flag to track if this islands has been erased </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="island_8hxx_source.html">island.hxx</a></li>
+<li>rnn/island.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_island_speciation_strategy-members.html b/docs/html/class_island_speciation_strategy-members.html
new file mode 100644
index 00000000..b044e680
--- /dev/null
+++ b/docs/html/class_island_speciation_strategy-members.html
@@ -0,0 +1,119 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
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+$(function() {
+  initMenu('',true,false,'search.php','Search');
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+});
+/* @license-end */</script>
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+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">IslandSpeciationStrategy Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#acf9f4b165c831eada8b46224eab05443">extinction_event_generation_number</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#aea495f09600ae8ab003e67957d174814">fill_island</a>(int32_t best_island)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generate_for_filled_island</b>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, function&lt; void(int32_t, RNN_Genome *)&gt; &amp;mutate, function&lt; RNN_Genome *(RNN_Genome *, RNN_Genome *)&gt; &amp;crossover) (defined in <a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a1d209dc38c374ffcb8ac7c34f72b2ce9">generate_genome</a>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, function&lt; void(int32_t, RNN_Genome *)&gt; &amp;mutate, function&lt; RNN_Genome *(RNN_Genome *, RNN_Genome *)&gt; &amp;crossover)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a0878978f59055a4a5a7aa54dc4b905a3">generated_genomes</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#aab18708f4ad07f725782234e31ee011f">generation_island</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a4db5c946c86373cf256177b35553b808">get_best_fitness</a>()</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a1a8a770c165b22a5070e11a3f579375e">get_best_genome</a>()</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a2b75aca60616268e4a6aee93ee4e5aee">get_generated_genomes</a>() const</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_global_best_genome</b>() (defined in <a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#ab44e2abd372cd97932dd87ed1b9c62c2">get_inserted_genomes</a>() const</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#ae578a7475f4825a7fa7fbf70738070c5">get_strategy_information_headers</a>() const</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a2b29208908a8a27a5693e27401790a97">get_strategy_information_values</a>() const</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a516627db390391867d6dd02f78e27caf">get_worst_fitness</a>()</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a563860351e5f176d539bc297949d490f">get_worst_genome</a>()</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a4103cc2b64eb18788c8c32118094645a">get_worst_island_by_best_genome</a>()</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>global_best_genome</b> (defined in <a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a6ae98982d01c68214e4bd703fe18146f">insert_genome</a>(RNN_Genome *genome)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#af5d118e77d6c24c328f8d477f776f15e">inserted_genomes</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#af4c685f5be866da1bb4395506aec112e">inter_island_crossover_rate</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a60bc752d6262d42b1dd294d8c4da563d">intra_island_crossover_rate</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a2e62f197c3bcc0d40369ac7a7ea9ed31">island_ranking_method</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a51947f81a70302a029b332b6d097beda">islands</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a57d264f45976d729bfb0a59129e1fd5a">islands_full</a>() const</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a51a285855bc78f42965b8d68a6e36257">islands_to_exterminate</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a62a9572d5d379edd35bda87dc81b335d">IslandSpeciationStrategy</a>(int32_t _number_of_islands, int32_t _max_island_size, double _mutation_rate, double _intra_island_crossover_rate, double _inter_island_crossover_rate, RNN_Genome *_seed_genome, string _island_ranking_method, string _repopulation_method, int32_t _extinction_event_generation_number, int32_t _repopulation_mutations, int32_t _islands_to_exterminate, int32_t _max_genomes, bool _repeat_extinction, bool seed_genome_was_minimal)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a3731543755dde917289df1b0630543b7">IslandSpeciationStrategy</a>(int32_t _number_of_islands, int32_t _max_island_size, double _mutation_rate, double _intra_island_crossover_rate, double _inter_island_crossover_rate, RNN_Genome *_seed_genome, string _island_ranking_method, string _repopulation_method, int32_t _extinction_event_generation_number, int32_t _repopulation_mutations, int32_t _islands_to_exterminate, bool seed_genome_was_minimal, function&lt; void(RNN_Genome *)&gt; &amp;modify)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>max_genomes</b> (defined in <a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#ac78b4a8411e69dfea9b0a7b5aa3e3d99">max_island_size</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#aa5969191a3d5f23deea86d85c88292f0">mutation_rate</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#adf6fad09de8e0b8ccc927580e4bd68f4">number_of_islands</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#aa26da7c800d7ab2b1299554a490deb4c">parents_repopulation</a>(string method, uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, function&lt; void(int32_t, RNN_Genome *)&gt; &amp;mutate, function&lt; RNN_Genome *(RNN_Genome *, RNN_Genome *)&gt; &amp;crossover)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a4ba6785df117932f3c465cbc31a5ca3f">print</a>(string indent=&quot;&quot;) const</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a4dc7a8138b13b6ca22acbe9038e90ae4">rank_islands</a>()</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>repeat_extinction</b> (defined in <a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#adcdbda3a002564d49f286fb2699f37f5">repopulation_method</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#af8729a80fa4e31059e5ae020476e5cd3">repopulation_mutations</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a7b3dd21a20e4a14aa2a0657c73c3d608">seed_genome</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">seed_genome_was_minimal</a></td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_erased_islands_status</b>() (defined in <a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_island_speciation_strategy.html b/docs/html/class_island_speciation_strategy.html
new file mode 100644
index 00000000..0f49ab6e
--- /dev/null
+++ b/docs/html/class_island_speciation_strategy.html
@@ -0,0 +1,943 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: IslandSpeciationStrategy Class Reference</title>
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+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_island_speciation_strategy-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">IslandSpeciationStrategy Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for IslandSpeciationStrategy:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_island_speciation_strategy.png" usemap="#IslandSpeciationStrategy_map" alt=""/>
+  <map id="IslandSpeciationStrategy_map" name="IslandSpeciationStrategy_map">
+<area href="class_speciation_strategy.html" alt="SpeciationStrategy" shape="rect" coords="0,0,151,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a62a9572d5d379edd35bda87dc81b335d"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a62a9572d5d379edd35bda87dc81b335d">IslandSpeciationStrategy</a> (int32_t _number_of_islands, int32_t _max_island_size, double _mutation_rate, double _intra_island_crossover_rate, double _inter_island_crossover_rate, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *_seed_genome, <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> _island_ranking_method, <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> _repopulation_method, int32_t _extinction_event_generation_number, int32_t _repopulation_mutations, int32_t _islands_to_exterminate, int32_t _max_genomes, bool _repeat_extinction, bool <a class="el" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">seed_genome_was_minimal</a>)</td></tr>
+<tr class="memdesc:a62a9572d5d379edd35bda87dc81b335d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Creates a new <a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a>.  <a href="class_island_speciation_strategy.html#a62a9572d5d379edd35bda87dc81b335d">More...</a><br /></td></tr>
+<tr class="separator:a62a9572d5d379edd35bda87dc81b335d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3731543755dde917289df1b0630543b7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a3731543755dde917289df1b0630543b7">IslandSpeciationStrategy</a> (int32_t _number_of_islands, int32_t _max_island_size, double _mutation_rate, double _intra_island_crossover_rate, double _inter_island_crossover_rate, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *_seed_genome, <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> _island_ranking_method, <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> _repopulation_method, int32_t _extinction_event_generation_number, int32_t _repopulation_mutations, int32_t _islands_to_exterminate, bool <a class="el" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">seed_genome_was_minimal</a>, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;modify)</td></tr>
+<tr class="memdesc:a3731543755dde917289df1b0630543b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Transfer learning constructor.  <a href="class_island_speciation_strategy.html#a3731543755dde917289df1b0630543b7">More...</a><br /></td></tr>
+<tr class="separator:a3731543755dde917289df1b0630543b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2b75aca60616268e4a6aee93ee4e5aee"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a2b75aca60616268e4a6aee93ee4e5aee">get_generated_genomes</a> () const</td></tr>
+<tr class="separator:a2b75aca60616268e4a6aee93ee4e5aee"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab44e2abd372cd97932dd87ed1b9c62c2"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#ab44e2abd372cd97932dd87ed1b9c62c2">get_inserted_genomes</a> () const</td></tr>
+<tr class="separator:ab44e2abd372cd97932dd87ed1b9c62c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4db5c946c86373cf256177b35553b808"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a4db5c946c86373cf256177b35553b808">get_best_fitness</a> ()</td></tr>
+<tr class="memdesc:a4db5c946c86373cf256177b35553b808"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the fitness of the best genome of all the islands.  <a href="class_island_speciation_strategy.html#a4db5c946c86373cf256177b35553b808">More...</a><br /></td></tr>
+<tr class="separator:a4db5c946c86373cf256177b35553b808"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a516627db390391867d6dd02f78e27caf"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a516627db390391867d6dd02f78e27caf">get_worst_fitness</a> ()</td></tr>
+<tr class="memdesc:a516627db390391867d6dd02f78e27caf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the fitness of the worst genome of all the islands.  <a href="class_island_speciation_strategy.html#a516627db390391867d6dd02f78e27caf">More...</a><br /></td></tr>
+<tr class="separator:a516627db390391867d6dd02f78e27caf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1a8a770c165b22a5070e11a3f579375e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a1a8a770c165b22a5070e11a3f579375e">get_best_genome</a> ()</td></tr>
+<tr class="memdesc:a1a8a770c165b22a5070e11a3f579375e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the best genome of all the islands.  <a href="class_island_speciation_strategy.html#a1a8a770c165b22a5070e11a3f579375e">More...</a><br /></td></tr>
+<tr class="separator:a1a8a770c165b22a5070e11a3f579375e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a563860351e5f176d539bc297949d490f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a563860351e5f176d539bc297949d490f">get_worst_genome</a> ()</td></tr>
+<tr class="memdesc:a563860351e5f176d539bc297949d490f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the the worst genome of all the islands.  <a href="class_island_speciation_strategy.html#a563860351e5f176d539bc297949d490f">More...</a><br /></td></tr>
+<tr class="separator:a563860351e5f176d539bc297949d490f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a57d264f45976d729bfb0a59129e1fd5a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a57d264f45976d729bfb0a59129e1fd5a">islands_full</a> () const</td></tr>
+<tr class="separator:a57d264f45976d729bfb0a59129e1fd5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6ae98982d01c68214e4bd703fe18146f"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a6ae98982d01c68214e4bd703fe18146f">insert_genome</a> (<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *genome)</td></tr>
+<tr class="memdesc:a6ae98982d01c68214e4bd703fe18146f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inserts a <b>copy</b> of the genome into one of the islands handled by this strategy, determined by the RNN_Genome::get_group_id() method.  <a href="class_island_speciation_strategy.html#a6ae98982d01c68214e4bd703fe18146f">More...</a><br /></td></tr>
+<tr class="separator:a6ae98982d01c68214e4bd703fe18146f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4103cc2b64eb18788c8c32118094645a"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a4103cc2b64eb18788c8c32118094645a">get_worst_island_by_best_genome</a> ()</td></tr>
+<tr class="memdesc:a4103cc2b64eb18788c8c32118094645a"><td class="mdescLeft">&#160;</td><td class="mdescRight">find the worst island in the population, the worst island's best genome is the worst among all the islands  <a href="class_island_speciation_strategy.html#a4103cc2b64eb18788c8c32118094645a">More...</a><br /></td></tr>
+<tr class="separator:a4103cc2b64eb18788c8c32118094645a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4dc7a8138b13b6ca22acbe9038e90ae4"><td class="memItemLeft" align="right" valign="top"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int32_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a4dc7a8138b13b6ca22acbe9038e90ae4">rank_islands</a> ()</td></tr>
+<tr class="memdesc:a4dc7a8138b13b6ca22acbe9038e90ae4"><td class="mdescLeft">&#160;</td><td class="mdescRight">rank the islands by their best fitness, the fitness of ranked islands are in descending order  <a href="class_island_speciation_strategy.html#a4dc7a8138b13b6ca22acbe9038e90ae4">More...</a><br /></td></tr>
+<tr class="separator:a4dc7a8138b13b6ca22acbe9038e90ae4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1d209dc38c374ffcb8ac7c34f72b2ce9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a1d209dc38c374ffcb8ac7c34f72b2ce9">generate_genome</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(int32_t, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;mutate, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover)</td></tr>
+<tr class="memdesc:a1d209dc38c374ffcb8ac7c34f72b2ce9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates a new genome.  <a href="class_island_speciation_strategy.html#a1d209dc38c374ffcb8ac7c34f72b2ce9">More...</a><br /></td></tr>
+<tr class="separator:a1d209dc38c374ffcb8ac7c34f72b2ce9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8763001966861643be095b5c051fa1f9"><td class="memItemLeft" align="right" valign="top"><a id="a8763001966861643be095b5c051fa1f9"></a>
+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>generate_for_filled_island</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(int32_t, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;mutate, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover)</td></tr>
+<tr class="separator:a8763001966861643be095b5c051fa1f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4ba6785df117932f3c465cbc31a5ca3f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a4ba6785df117932f3c465cbc31a5ca3f">print</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> indent=&quot;&quot;) const</td></tr>
+<tr class="memdesc:a4ba6785df117932f3c465cbc31a5ca3f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prints out all the island's populations.  <a href="class_island_speciation_strategy.html#a4ba6785df117932f3c465cbc31a5ca3f">More...</a><br /></td></tr>
+<tr class="separator:a4ba6785df117932f3c465cbc31a5ca3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae578a7475f4825a7fa7fbf70738070c5"><td class="memItemLeft" align="right" valign="top"><a id="ae578a7475f4825a7fa7fbf70738070c5"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#ae578a7475f4825a7fa7fbf70738070c5">get_strategy_information_headers</a> () const</td></tr>
+<tr class="memdesc:ae578a7475f4825a7fa7fbf70738070c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets speciation strategy information headers for logs. <br /></td></tr>
+<tr class="separator:ae578a7475f4825a7fa7fbf70738070c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2b29208908a8a27a5693e27401790a97"><td class="memItemLeft" align="right" valign="top"><a id="a2b29208908a8a27a5693e27401790a97"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a2b29208908a8a27a5693e27401790a97">get_strategy_information_values</a> () const</td></tr>
+<tr class="memdesc:a2b29208908a8a27a5693e27401790a97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets speciation strategy information values for logs. <br /></td></tr>
+<tr class="separator:a2b29208908a8a27a5693e27401790a97"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa26da7c800d7ab2b1299554a490deb4c"><td class="memItemLeft" align="right" valign="top"><a id="aa26da7c800d7ab2b1299554a490deb4c"></a>
+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#aa26da7c800d7ab2b1299554a490deb4c">parents_repopulation</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> method, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(int32_t, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;mutate, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover)</td></tr>
+<tr class="memdesc:aa26da7c800d7ab2b1299554a490deb4c"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="class_island.html">Island</a> repopulation through two random parents from two seperate islands, parents can be random genomes or best genome from the island. <br /></td></tr>
+<tr class="separator:aa26da7c800d7ab2b1299554a490deb4c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aea495f09600ae8ab003e67957d174814"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#aea495f09600ae8ab003e67957d174814">fill_island</a> (int32_t best_island)</td></tr>
+<tr class="memdesc:aea495f09600ae8ab003e67957d174814"><td class="mdescLeft">&#160;</td><td class="mdescRight">fill a island with the best island.  <a href="class_island_speciation_strategy.html#aea495f09600ae8ab003e67957d174814">More...</a><br /></td></tr>
+<tr class="separator:aea495f09600ae8ab003e67957d174814"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af104950bd763f5166da9e574ff660be7"><td class="memItemLeft" align="right" valign="top"><a id="af104950bd763f5166da9e574ff660be7"></a>
+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>get_global_best_genome</b> ()</td></tr>
+<tr class="separator:af104950bd763f5166da9e574ff660be7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2a467e8e681d28de3c05fe4f357c75ab"><td class="memItemLeft" align="right" valign="top"><a id="a2a467e8e681d28de3c05fe4f357c75ab"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>set_erased_islands_status</b> ()</td></tr>
+<tr class="separator:a2a467e8e681d28de3c05fe4f357c75ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:aab18708f4ad07f725782234e31ee011f"><td class="memItemLeft" align="right" valign="top"><a id="aab18708f4ad07f725782234e31ee011f"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#aab18708f4ad07f725782234e31ee011f">generation_island</a></td></tr>
+<tr class="memdesc:aab18708f4ad07f725782234e31ee011f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Used to track which island to generate the next genome from. <br /></td></tr>
+<tr class="separator:aab18708f4ad07f725782234e31ee011f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adf6fad09de8e0b8ccc927580e4bd68f4"><td class="memItemLeft" align="right" valign="top"><a id="adf6fad09de8e0b8ccc927580e4bd68f4"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#adf6fad09de8e0b8ccc927580e4bd68f4">number_of_islands</a></td></tr>
+<tr class="memdesc:adf6fad09de8e0b8ccc927580e4bd68f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">the number of islands to have. <br /></td></tr>
+<tr class="separator:adf6fad09de8e0b8ccc927580e4bd68f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac78b4a8411e69dfea9b0a7b5aa3e3d99"><td class="memItemLeft" align="right" valign="top"><a id="ac78b4a8411e69dfea9b0a7b5aa3e3d99"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#ac78b4a8411e69dfea9b0a7b5aa3e3d99">max_island_size</a></td></tr>
+<tr class="memdesc:ac78b4a8411e69dfea9b0a7b5aa3e3d99"><td class="mdescLeft">&#160;</td><td class="mdescRight">the maximum number of genomes in an island. <br /></td></tr>
+<tr class="separator:ac78b4a8411e69dfea9b0a7b5aa3e3d99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa5969191a3d5f23deea86d85c88292f0"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#aa5969191a3d5f23deea86d85c88292f0">mutation_rate</a></td></tr>
+<tr class="memdesc:aa5969191a3d5f23deea86d85c88292f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">How frequently to do mutations.  <a href="class_island_speciation_strategy.html#aa5969191a3d5f23deea86d85c88292f0">More...</a><br /></td></tr>
+<tr class="separator:aa5969191a3d5f23deea86d85c88292f0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a60bc752d6262d42b1dd294d8c4da563d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a60bc752d6262d42b1dd294d8c4da563d">intra_island_crossover_rate</a></td></tr>
+<tr class="memdesc:a60bc752d6262d42b1dd294d8c4da563d"><td class="mdescLeft">&#160;</td><td class="mdescRight">How frequently to do intra-island crossovers.  <a href="class_island_speciation_strategy.html#a60bc752d6262d42b1dd294d8c4da563d">More...</a><br /></td></tr>
+<tr class="separator:a60bc752d6262d42b1dd294d8c4da563d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af4c685f5be866da1bb4395506aec112e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#af4c685f5be866da1bb4395506aec112e">inter_island_crossover_rate</a></td></tr>
+<tr class="memdesc:af4c685f5be866da1bb4395506aec112e"><td class="mdescLeft">&#160;</td><td class="mdescRight">How frequently to do inter-island crossovers.  <a href="class_island_speciation_strategy.html#af4c685f5be866da1bb4395506aec112e">More...</a><br /></td></tr>
+<tr class="separator:af4c685f5be866da1bb4395506aec112e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0878978f59055a4a5a7aa54dc4b905a3"><td class="memItemLeft" align="right" valign="top"><a id="a0878978f59055a4a5a7aa54dc4b905a3"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a0878978f59055a4a5a7aa54dc4b905a3">generated_genomes</a></td></tr>
+<tr class="memdesc:a0878978f59055a4a5a7aa54dc4b905a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">How many genomes have been generated by this speciation strategy. <br /></td></tr>
+<tr class="separator:a0878978f59055a4a5a7aa54dc4b905a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af5d118e77d6c24c328f8d477f776f15e"><td class="memItemLeft" align="right" valign="top"><a id="af5d118e77d6c24c328f8d477f776f15e"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#af5d118e77d6c24c328f8d477f776f15e">inserted_genomes</a></td></tr>
+<tr class="memdesc:af5d118e77d6c24c328f8d477f776f15e"><td class="mdescLeft">&#160;</td><td class="mdescRight">How many genomes have been inserted into this speciatoin strategy. <br /></td></tr>
+<tr class="separator:af5d118e77d6c24c328f8d477f776f15e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7b3dd21a20e4a14aa2a0657c73c3d608"><td class="memItemLeft" align="right" valign="top"><a id="a7b3dd21a20e4a14aa2a0657c73c3d608"></a>
+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a7b3dd21a20e4a14aa2a0657c73c3d608">seed_genome</a></td></tr>
+<tr class="memdesc:a7b3dd21a20e4a14aa2a0657c73c3d608"><td class="mdescLeft">&#160;</td><td class="mdescRight">keep a reference to the seed genome so we can re-use it across islands and not duplicate innovation numbers. <br /></td></tr>
+<tr class="separator:a7b3dd21a20e4a14aa2a0657c73c3d608"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2e62f197c3bcc0d40369ac7a7ea9ed31"><td class="memItemLeft" align="right" valign="top"><a id="a2e62f197c3bcc0d40369ac7a7ea9ed31"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a2e62f197c3bcc0d40369ac7a7ea9ed31">island_ranking_method</a></td></tr>
+<tr class="memdesc:a2e62f197c3bcc0d40369ac7a7ea9ed31"><td class="mdescLeft">&#160;</td><td class="mdescRight">The method used to find the worst island in population. <br /></td></tr>
+<tr class="separator:a2e62f197c3bcc0d40369ac7a7ea9ed31"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adcdbda3a002564d49f286fb2699f37f5"><td class="memItemLeft" align="right" valign="top"><a id="adcdbda3a002564d49f286fb2699f37f5"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#adcdbda3a002564d49f286fb2699f37f5">repopulation_method</a></td></tr>
+<tr class="memdesc:adcdbda3a002564d49f286fb2699f37f5"><td class="mdescLeft">&#160;</td><td class="mdescRight">The method used to repopulate the island after being erased. <br /></td></tr>
+<tr class="separator:adcdbda3a002564d49f286fb2699f37f5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acf9f4b165c831eada8b46224eab05443"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#acf9f4b165c831eada8b46224eab05443">extinction_event_generation_number</a></td></tr>
+<tr class="memdesc:acf9f4b165c831eada8b46224eab05443"><td class="mdescLeft">&#160;</td><td class="mdescRight">When <a class="el" href="class_e_x_a_m_m.html">EXAMM</a> reaches this generation id, an extinction event will be triggered (i.e.  <a href="class_island_speciation_strategy.html#acf9f4b165c831eada8b46224eab05443">More...</a><br /></td></tr>
+<tr class="separator:acf9f4b165c831eada8b46224eab05443"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af8729a80fa4e31059e5ae020476e5cd3"><td class="memItemLeft" align="right" valign="top"><a id="af8729a80fa4e31059e5ae020476e5cd3"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#af8729a80fa4e31059e5ae020476e5cd3">repopulation_mutations</a></td></tr>
+<tr class="memdesc:af8729a80fa4e31059e5ae020476e5cd3"><td class="mdescLeft">&#160;</td><td class="mdescRight">When an island is erradicated, it is repopulated with copies of the best genome that have this number of mutations applied to them. <br /></td></tr>
+<tr class="separator:af8729a80fa4e31059e5ae020476e5cd3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51a285855bc78f42965b8d68a6e36257"><td class="memItemLeft" align="right" valign="top"><a id="a51a285855bc78f42965b8d68a6e36257"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a51a285855bc78f42965b8d68a6e36257">islands_to_exterminate</a></td></tr>
+<tr class="memdesc:a51a285855bc78f42965b8d68a6e36257"><td class="mdescLeft">&#160;</td><td class="mdescRight">When an extinction event is triggered, this is the number of islands that will be exterminated. <br /></td></tr>
+<tr class="separator:a51a285855bc78f42965b8d68a6e36257"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af762308abf1f29ef20450b6d953a485f"><td class="memItemLeft" align="right" valign="top"><a id="af762308abf1f29ef20450b6d953a485f"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><b>max_genomes</b></td></tr>
+<tr class="separator:af762308abf1f29ef20450b6d953a485f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2001746533019215214d281f5a62fee2"><td class="memItemLeft" align="right" valign="top"><a id="a2001746533019215214d281f5a62fee2"></a>
+bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">seed_genome_was_minimal</a></td></tr>
+<tr class="memdesc:a2001746533019215214d281f5a62fee2"><td class="mdescLeft">&#160;</td><td class="mdescRight">is true if we passed in a minimal genome (i.e., are not using transfer learning) <br /></td></tr>
+<tr class="separator:a2001746533019215214d281f5a62fee2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a225690c3cb06534ac83236ede2abab5d"><td class="memItemLeft" align="right" valign="top"><a id="a225690c3cb06534ac83236ede2abab5d"></a>
+bool&#160;</td><td class="memItemRight" valign="bottom"><b>repeat_extinction</b></td></tr>
+<tr class="separator:a225690c3cb06534ac83236ede2abab5d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51947f81a70302a029b332b6d097beda"><td class="memItemLeft" align="right" valign="top"><a id="a51947f81a70302a029b332b6d097beda"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_island.html">Island</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_island_speciation_strategy.html#a51947f81a70302a029b332b6d097beda">islands</a></td></tr>
+<tr class="memdesc:a51947f81a70302a029b332b6d097beda"><td class="mdescLeft">&#160;</td><td class="mdescRight">All the islands which contain the genomes for this speciation strategy. <br /></td></tr>
+<tr class="separator:a51947f81a70302a029b332b6d097beda"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac5e0e57d0758c12a13f4c867cf1d9e7a"><td class="memItemLeft" align="right" valign="top"><a id="ac5e0e57d0758c12a13f4c867cf1d9e7a"></a>
+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>global_best_genome</b></td></tr>
+<tr class="separator:ac5e0e57d0758c12a13f4c867cf1d9e7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a62a9572d5d379edd35bda87dc81b335d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a62a9572d5d379edd35bda87dc81b335d">&#9670;&nbsp;</a></span>IslandSpeciationStrategy() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">IslandSpeciationStrategy::IslandSpeciationStrategy </td>
+          <td>(</td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_number_of_islands</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_max_island_size</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>_mutation_rate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>_intra_island_crossover_rate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>_inter_island_crossover_rate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td>
+          <td class="paramname"><em>_seed_genome</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>_island_ranking_method</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>_repopulation_method</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_extinction_event_generation_number</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_repopulation_mutations</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_islands_to_exterminate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_max_genomes</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>_repeat_extinction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>seed_genome_was_minimal</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Creates a new <a class="el" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">number_of_islands</td><td>specifies how many islands it will us e </td></tr>
+    <tr><td class="paramname">max_island_size</td><td>specifies the maximum number of gneomes in an island </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a3731543755dde917289df1b0630543b7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3731543755dde917289df1b0630543b7">&#9670;&nbsp;</a></span>IslandSpeciationStrategy() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">IslandSpeciationStrategy::IslandSpeciationStrategy </td>
+          <td>(</td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_number_of_islands</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_max_island_size</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>_mutation_rate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>_intra_island_crossover_rate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>_inter_island_crossover_rate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td>
+          <td class="paramname"><em>_seed_genome</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>_island_ranking_method</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>_repopulation_method</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_extinction_event_generation_number</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_repopulation_mutations</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>_islands_to_exterminate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>seed_genome_was_minimal</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>modify</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Transfer learning constructor. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">Modification</td><td>function to be applied to every copy of the seed_genome </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="aea495f09600ae8ab003e67957d174814"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aea495f09600ae8ab003e67957d174814">&#9670;&nbsp;</a></span>fill_island()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void IslandSpeciationStrategy::fill_island </td>
+          <td>(</td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>best_island</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>fill a island with the best island. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">best_island</td><td>is the island id of the best island </td></tr>
+    <tr><td class="paramname">fill_island</td><td>is the island is of the island to be filled </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a1d209dc38c374ffcb8ac7c34f72b2ce9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1d209dc38c374ffcb8ac7c34f72b2ce9">&#9670;&nbsp;</a></span>generate_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * IslandSpeciationStrategy::generate_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rng_0_1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;&#160;</td>
+          <td class="paramname"><em>generator</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(int32_t, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>mutate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>crossover</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates a new genome. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">rng_0_1</td><td>is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). </td></tr>
+    <tr><td class="paramname">generator</td><td>is the random number generator </td></tr>
+    <tr><td class="paramname">mutate</td><td>is the a function which performs a mutation on a genome </td></tr>
+    <tr><td class="paramname">crossover</td><td>is the function which performs crossover between two genomes</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>the newly generated genome. </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a76f36f0dd7c47727aef912d48f0fa26b">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a4db5c946c86373cf256177b35553b808"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4db5c946c86373cf256177b35553b808">&#9670;&nbsp;</a></span>get_best_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double IslandSpeciationStrategy::get_best_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the fitness of the best genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best fitness over all islands </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#afa3f2d35da2172a32ed06588ef09d4d0">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a1a8a770c165b22a5070e11a3f579375e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1a8a770c165b22a5070e11a3f579375e">&#9670;&nbsp;</a></span>get_best_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * IslandSpeciationStrategy::get_best_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the best genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best genome of all islands or NULL if no genomes have yet been inserted </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#ad0796098d09c25bfee14d9f264bcba2d">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a2b75aca60616268e4a6aee93ee4e5aee"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2b75aca60616268e4a6aee93ee4e5aee">&#9670;&nbsp;</a></span>get_generated_genomes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t IslandSpeciationStrategy::get_generated_genomes </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the number of generated genomes. </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a7699a7050ed5a66693f19e834e9ba082">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="ab44e2abd372cd97932dd87ed1b9c62c2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab44e2abd372cd97932dd87ed1b9c62c2">&#9670;&nbsp;</a></span>get_inserted_genomes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t IslandSpeciationStrategy::get_inserted_genomes </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the number of inserted genomes. </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a1f07309130568d8cc79da44c8da6ca69">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a516627db390391867d6dd02f78e27caf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a516627db390391867d6dd02f78e27caf">&#9670;&nbsp;</a></span>get_worst_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double IslandSpeciationStrategy::get_worst_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the fitness of the worst genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst fitness over all islands </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a6bdef578fe33c628a81db35d75eaa473">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a563860351e5f176d539bc297949d490f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a563860351e5f176d539bc297949d490f">&#9670;&nbsp;</a></span>get_worst_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * IslandSpeciationStrategy::get_worst_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the the worst genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst genome of all islands or NULL if no genomes have yet been inserted </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#ae84e9c1e0eaf02886b41b1d9adf488f4">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a4103cc2b64eb18788c8c32118094645a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4103cc2b64eb18788c8c32118094645a">&#9670;&nbsp;</a></span>get_worst_island_by_best_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t IslandSpeciationStrategy::get_worst_island_by_best_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>find the worst island in the population, the worst island's best genome is the worst among all the islands </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst island id </dd></dl>
+
+</div>
+</div>
+<a id="a6ae98982d01c68214e4bd703fe18146f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6ae98982d01c68214e4bd703fe18146f">&#9670;&nbsp;</a></span>insert_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t IslandSpeciationStrategy::insert_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td>
+          <td class="paramname"><em>genome</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Inserts a <b>copy</b> of the genome into one of the islands handled by this strategy, determined by the RNN_Genome::get_group_id() method. </p>
+<p>The caller of this method will need to free the memory of the genome passed into this method.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">genome</td><td>is the genome to insert. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>a value &lt; 0 if the genome was not inserted, 0 if it was a new best genome for all the islands, or &gt; 0 otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a1fd87178f38052aa934312e49819e509">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a57d264f45976d729bfb0a59129e1fd5a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a57d264f45976d729bfb0a59129e1fd5a">&#9670;&nbsp;</a></span>islands_full()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool IslandSpeciationStrategy::islands_full </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>true if all the islands are full </dd></dl>
+
+</div>
+</div>
+<a id="a4ba6785df117932f3c465cbc31a5ca3f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4ba6785df117932f3c465cbc31a5ca3f">&#9670;&nbsp;</a></span>print()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void IslandSpeciationStrategy::print </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>indent</em> = <code>&quot;&quot;</code></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Prints out all the island's populations. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">indent</td><td>is how much to indent what is printed out </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a1d44f4c87ab00182e61f0fb364f274a9">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a4dc7a8138b13b6ca22acbe9038e90ae4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4dc7a8138b13b6ca22acbe9038e90ae4">&#9670;&nbsp;</a></span>rank_islands()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int32_t &gt; IslandSpeciationStrategy::rank_islands </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>rank the islands by their best fitness, the fitness of ranked islands are in descending order </p>
+<dl class="section return"><dt>Returns</dt><dd>island rank from worst to the best </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="acf9f4b165c831eada8b46224eab05443"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acf9f4b165c831eada8b46224eab05443">&#9670;&nbsp;</a></span>extinction_event_generation_number</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t IslandSpeciationStrategy::extinction_event_generation_number</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>When <a class="el" href="class_e_x_a_m_m.html">EXAMM</a> reaches this generation id, an extinction event will be triggered (i.e. </p>
+<p>islands will be killed and repopulated). </p>
+
+</div>
+</div>
+<a id="af4c685f5be866da1bb4395506aec112e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af4c685f5be866da1bb4395506aec112e">&#9670;&nbsp;</a></span>inter_island_crossover_rate</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double IslandSpeciationStrategy::inter_island_crossover_rate</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>How frequently to do inter-island crossovers. </p>
+<p>Note that mutation_rate + intra_island_crossover_rate + inter_island_crossover_rate should equal 1, if not they will be scaled down such that they do. </p>
+
+</div>
+</div>
+<a id="a60bc752d6262d42b1dd294d8c4da563d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a60bc752d6262d42b1dd294d8c4da563d">&#9670;&nbsp;</a></span>intra_island_crossover_rate</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double IslandSpeciationStrategy::intra_island_crossover_rate</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>How frequently to do intra-island crossovers. </p>
+<p>Note that mutation_rate + intra_island_crossover_rate + inter_island_crossover_rate should equal 1, if not they will be scaled down such that they do. </p>
+
+</div>
+</div>
+<a id="aa5969191a3d5f23deea86d85c88292f0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa5969191a3d5f23deea86d85c88292f0">&#9670;&nbsp;</a></span>mutation_rate</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double IslandSpeciationStrategy::mutation_rate</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>How frequently to do mutations. </p>
+<p>Note that mutation_rate + intra_island_crossover_rate + inter_island_crossover_rate should equal 1, if not they will be scaled down such that they do. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="island__speciation__strategy_8hxx_source.html">island_speciation_strategy.hxx</a></li>
+<li>rnn/island_speciation_strategy.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+</table>
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">LSTM_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>cell_bias</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cell_in_tanh</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>cell_out_tanh</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cell_values</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>cell_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_cell_bias</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_cell_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_forget_gate_bias</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_forget_gate_update_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_forget_gate_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_input_gate_bias</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_input_gate_update_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_input_gate_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_output_gate_bias</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_output_gate_update_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_output_gate_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_prev_cell</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_fired</b>(int time, double error) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forget_gate_bias</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>forget_gate_update_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forget_gate_values</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>forget_gate_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gradient</b>(string gradient_name) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng1_1, double range) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired</b>(int time, double incoming_output) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_gate_bias</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_gate_update_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_gate_values</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_gate_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_cell_in</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ld_cell_out</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_forget_gate</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ld_input_gate</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_output_gate</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>LSTM_Node</b>(int _innovation_number, int _type, double _depth) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int time, double delta) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_gate_bias</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_gate_update_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_gate_values</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_gate_weight</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print_gradient</b>(string gradient_name) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int _series_length) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>try_update_deltas</b>(int time) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~LSTM_Node</b>() (defined in <a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a>)</td><td class="entry"><a class="el" href="class_l_s_t_m___node.html">LSTM_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: LSTM_Node Class Reference</title>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_l_s_t_m___node-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">LSTM_Node Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for LSTM_Node:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_l_s_t_m___node.png" usemap="#LSTM_5FNode_map" alt=""/>
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+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="memitem:aede0ded08385b7de9cd3f7be255c62c6"><td class="memItemLeft" align="right" valign="top"><a id="aede0ded08385b7de9cd3f7be255c62c6"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>LSTM_Node</b> (int _innovation_number, int _type, double _depth)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_lamarckian</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double mu, double sigma)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_xavier</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng1_1, double range)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_kaiming</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double range)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_uniform_random</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_gradient</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> gradient_name)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>print_gradient</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> gradient_name)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>input_fired</b> (int time, double incoming_output)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>try_update_deltas</b> (int time)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>error_fired</b> (int time, double error)</td></tr>
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+<p>This is the complete list of members for <a class="el" href="class_large_image.html">LargeImage</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>alpha</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>channels</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>classification</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>draw_png</b>(string filename) const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>draw_png_4channel</b>(string filename) const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>draw_png_alpha</b>(string filename) const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_alpha_unnormalized</b>(int y, int x) const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_channels</b>() const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_classification</b>() const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_height</b>() const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_subimages</b>() const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_pixel</b>(int z, int y, int x) const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_pixel_avg</b>(vector&lt; float &gt; &amp;channel_avgs) const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_pixel_unnormalized</b>(int z, int y, int x) const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_pixel_variance</b>(const vector&lt; float &gt; &amp;channel_avgs, vector&lt; float &gt; &amp;channel_variances) const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_width</b>() const (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>height</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>images</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>LargeImage</b>(ifstream &amp;infile, int _number_subimages, int _channels, int _width, int _height, int _padding, int _classification, const LargeImages *_images) (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>LargeImage</b>(int _number_subimages, int _channels, int _width, int _height, int _padding, int _classification, const vector&lt; vector&lt; vector&lt; uint8_t &gt; &gt; &gt; &amp;_pixels) (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>LargeImage</b>(int _number_subimages, int _channels, int _width, int _height, int _padding, int _classification, const vector&lt; vector&lt; vector&lt; uint8_t &gt; &gt; &gt; &amp;_pixels, const vector&lt; vector&lt; uint8_t &gt; &gt; &amp;_alpha) (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>LargeImages</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize</b>(const vector&lt; float &gt; &amp;channel_avgs, const vector&lt; float &gt; &amp;channel_std_dev) (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>number_subimages</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>padding</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>pixels</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print</b>(ostream &amp;out) (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>scale_0_1</b>() (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_alpha</b>(const vector&lt; vector&lt; uint8_t &gt; &gt; &amp;_alpha) (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_alpha</b>(const vector&lt; vector&lt; float &gt; &gt; &amp;_alpha) (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_pixel</b>(int z, int y, int x, uint8_t value) (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>width</b> (defined in <a class="el" href="class_large_image.html">LargeImage</a>)</td><td class="entry"><a class="el" href="class_large_image.html">LargeImage</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~ImageInterface</b>()=0 (defined in <a class="el" href="class_image_interface.html">ImageInterface</a>)</td><td class="entry"><a class="el" href="class_image_interface.html">ImageInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: LargeImage Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_large_image-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">LargeImage Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for LargeImage:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_large_image.png" usemap="#LargeImage_map" alt=""/>
+  <map id="LargeImage_map" name="LargeImage_map">
+<area href="class_image_interface.html" alt="ImageInterface" shape="rect" coords="0,0,95,24"/>
+  </map>
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+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a8678301873cbe109b20376af2f8072e2"><td class="memItemLeft" align="right" valign="top"><a id="a8678301873cbe109b20376af2f8072e2"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>LargeImage</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">ifstream</a> &amp;infile, int _number_subimages, int _channels, int _width, int _height, int _padding, int _classification, const <a class="el" href="class_large_images.html">LargeImages</a> *_images)</td></tr>
+<tr class="separator:a8678301873cbe109b20376af2f8072e2"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:acf887fb82a57366d4d868881198bfc3a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_classification</b> () const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_subimages</b> () const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_channels</b> () const</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>scale_0_1</b> ()</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; float &gt; &amp;channel_avgs, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; float &gt; &amp;channel_std_dev)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>print</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out)</td></tr>
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+uint8_t&#160;</td><td class="memItemRight" valign="bottom"><b>get_pixel_unnormalized</b> (int z, int y, int x) const</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>set_alpha</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; float &gt; &gt; &amp;_alpha)</td></tr>
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+<a class="el" href="class_large_image.html">LargeImage</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>copy</b> () const</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>draw_png</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> filename) const</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>draw_png_4channel</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> filename) const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>number_subimages</b></td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>padding</b></td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>channels</b></td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>height</b></td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>width</b></td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>classification</b></td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; uint8_t &gt; &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>pixels</b></td></tr>
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+<tr class="memitem:aca0fcf094ed3c4c27cff032398afef30"><td class="memItemLeft" align="right" valign="top"><a id="aca0fcf094ed3c4c27cff032398afef30"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; uint8_t &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>alpha</b></td></tr>
+<tr class="separator:aca0fcf094ed3c4c27cff032398afef30"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa1eb933aebd546a8e3ed87a2f13d0114"><td class="memItemLeft" align="right" valign="top"><a id="aa1eb933aebd546a8e3ed87a2f13d0114"></a>
+const <a class="el" href="class_large_images.html">LargeImages</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>images</b></td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
+Friends</h2></td></tr>
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+class&#160;</td><td class="memItemRight" valign="bottom"><b>LargeImages</b></td></tr>
+<tr class="separator:a5368e97073c7df237833cef145d563a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>image_tools/<a class="el" href="large__image__set_8hxx_source.html">large_image_set.hxx</a></li>
+<li>image_tools/large_image_set.cxx</li>
+</ul>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">LargeImages Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_large_images.html">LargeImages</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>calculate_avg_std_dev</b>() (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>channel_avg</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>channel_std_dev</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>channels</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>class_sizes</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy_image</b>(int i) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>filename</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_average</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_channel_avg</b>(int channel) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_channel_std_dev</b>(int channel) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_class_size</b>(int i) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_classification</b>(int subimage) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_filename</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_image_channels</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_classification</b>(int image) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_image_height</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_width</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_large_image_channels</b>(int image) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_large_image_height</b>(int image) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_large_image_width</b>(int image) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_classes</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_images</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_large_images</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_subimages</b>(int i) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_padding</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_pixel</b>(int subimage, int z, int y, int x) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_raw_pixel</b>(int subimage, int z, int y, int x) const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_std_dev</b>() const (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>images</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>LargeImages</b>(string binary_filename, int _padding, int _subimage_height, int _subimage_width) (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>LargeImages</b>(string binary_filename, int _padding, int _subimage_height, int _subimage_width, const vector&lt; float &gt; &amp;_channel_avg, const vector&lt; float &gt; &amp;channel_std_dev) (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize</b>() (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>number_classes</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_images</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>padding</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>read_images_from_file</b>(string binary_filename) (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>subimage_height</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>subimage_width</b> (defined in <a class="el" href="class_large_images.html">LargeImages</a>)</td><td class="entry"><a class="el" href="class_large_images.html">LargeImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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+<tr class="separator:ac45b1f977e41d511db018dd9bcae003a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>image_tools/<a class="el" href="large__image__set_8hxx_source.html">large_image_set.hxx</a></li>
+<li>image_tools/large_image_set.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>Line</b>(int _y1, int _x1, int _y2, int _x2) (defined in <a class="el" href="class_line.html">Line</a>)</td><td class="entry"><a class="el" href="class_line.html">Line</a></td><td class="entry"></td></tr>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>x2</b> (defined in <a class="el" href="class_line.html">Line</a>)</td><td class="entry"><a class="el" href="class_line.html">Line</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>y1</b> (defined in <a class="el" href="class_line.html">Line</a>)</td><td class="entry"><a class="el" href="class_line.html">Line</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>y2</b> (defined in <a class="el" href="class_line.html">Line</a>)</td><td class="entry"><a class="el" href="class_line.html">Line</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Line Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+/* @license-end */
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+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
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+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="class_line-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Line Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="memitem:a495909e935abfa7fe77a47be7a733a8d"><td class="memItemLeft" align="right" valign="top"><a id="a495909e935abfa7fe77a47be7a733a8d"></a>
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+<tr class="separator:a4f08d1038eba337d6f0fb32713e528f1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>image_tools/<a class="el" href="mosaic__image__set_8hxx_source.html">mosaic_image_set.hxx</a></li>
+<li>image_tools/mosaic_image_set.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
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+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
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+<script type="text/javascript">
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+<script type="text/javascript" src="menudata.js"></script>
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  initMenu('',true,false,'search.php','Search');
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+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
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+<div class="header">
+  <div class="headertitle">
+<div class="title">Log Member List</div>  </div>
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+<div class="contents">
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+<p>This is the complete list of members for <a class="el" href="class_log.html">Log</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a08b261dd43ff89110e602a3a61f6ec61">file_message_level</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#adb225c396180e0d8f73580e71eae6554">info</a>(const char *format,...)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a70efafdaaf797f644bb24a8e1c7f5643">INFO</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#a4b4380a986ebf18e448221d78a236bc3">info_no_header</a>(const char *format,...)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#afc35697517d849ab8cf4a774d2b32ba8">initialize</a>(const vector&lt; string &gt; &amp;arguments)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#a814d0d060c29987d5d43d55b3d8d542c">log_ids</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#aa8bf3e23cf88dc4e48aafd791fe93cd7">log_ids_mutex</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#aec94f82d0ed91efcb398ce15f2f14a34">max_header_length</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a5503fcf17f82f95b1090a797af98343c">max_message_length</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#a44e61f1a4560b557bd8b3374cd87e0e3">NONE</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a18dc29ac4d511d8eab1bb9bc5771e7bf">output_directory</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#afe8e50d6e52f39d4ed931f13eb49af5f">output_files</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a92a5eb55bc8e480aa984d6d592f07d69">parse_level_from_string</a>(string level)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#ad6bd8ce041323bb69e69aeb9edbe12ee">process_rank</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a1e95d22090ba14b096609c67487f9761">register_command_line_arguments</a>()</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#aecae136e87aadf153c98f4f1f92ac44f">release_id</a>(string human_readable_id)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a4718a27c58db20d66ac3c511931d475b">restrict_to_rank</a>(int32_t _restricted_rank)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#a47ec200a53bfc6b8b6a39bc91d5dbc86">restricted_rank</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#ac02fea24138d69a35521d82ee64bb90d">set_id</a>(string human_readable_id)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#a6183417026fe34b0d1494f1504b52b8f">set_rank</a>(int32_t _process_rank)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a633c6eafa442ecfb3b3322f89496e52e">std_message_level</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#a696a49a4d58146f0ee69be1562991e12">TRACE</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#ad0d504bc7f5957a814e9de5ea08f982a">trace</a>(const char *format,...)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#a5eca5217a6fc23a54cff35ff12ad04f6">trace_no_header</a>(const char *format,...)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a477d1ab8cce3a2ef12cb8006fa3c6bf5">warning</a>(const char *format,...)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#a02c6c399678d6687f38c6600751aa2e7">WARNING</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a9bbfa4b8f4fb2262d914f00ba04dd6c6">warning_no_header</a>(const char *format,...)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_log.html#aff6a4531e693fd53ad051c7fef28c6aa">write_message</a>(bool print_header, int8_t message_level, const char *message_type, const char *format, va_list arguments)</td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_log.html#a20bd437aa24965f6e9650fd5e2d48923">write_to_file</a></td><td class="entry"><a class="el" href="class_log.html">Log</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Log Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
+<a href="#pub-static-attribs">Static Public Attributes</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-static-attribs">Static Private Attributes</a> &#124;
+<a href="class_log-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Log Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
+Static Public Member Functions</h2></td></tr>
+<tr class="memitem:a1e95d22090ba14b096609c67487f9761"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a1e95d22090ba14b096609c67487f9761">register_command_line_arguments</a> ()</td></tr>
+<tr class="memdesc:a1e95d22090ba14b096609c67487f9761"><td class="mdescLeft">&#160;</td><td class="mdescRight">Registers used command line arguments and instructions with the CommandLine class.  <a href="class_log.html#a1e95d22090ba14b096609c67487f9761">More...</a><br /></td></tr>
+<tr class="separator:a1e95d22090ba14b096609c67487f9761"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a92a5eb55bc8e480aa984d6d592f07d69"><td class="memItemLeft" align="right" valign="top">static <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int8_t</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a92a5eb55bc8e480aa984d6d592f07d69">parse_level_from_string</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> level)</td></tr>
+<tr class="separator:a92a5eb55bc8e480aa984d6d592f07d69"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afc35697517d849ab8cf4a774d2b32ba8"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#afc35697517d849ab8cf4a774d2b32ba8">initialize</a> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;arguments)</td></tr>
+<tr class="memdesc:afc35697517d849ab8cf4a774d2b32ba8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initializes the <a class="el" href="class_log.html">Log</a> given arguments retreived from the CommandLine class.  <a href="class_log.html#afc35697517d849ab8cf4a774d2b32ba8">More...</a><br /></td></tr>
+<tr class="separator:afc35697517d849ab8cf4a774d2b32ba8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6183417026fe34b0d1494f1504b52b8f"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a6183417026fe34b0d1494f1504b52b8f">set_rank</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> _process_rank)</td></tr>
+<tr class="memdesc:a6183417026fe34b0d1494f1504b52b8f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the MPI process rank for this <a class="el" href="class_log.html">Log</a>.  <a href="class_log.html#a6183417026fe34b0d1494f1504b52b8f">More...</a><br /></td></tr>
+<tr class="separator:a6183417026fe34b0d1494f1504b52b8f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4718a27c58db20d66ac3c511931d475b"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a4718a27c58db20d66ac3c511931d475b">restrict_to_rank</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> _restricted_rank)</td></tr>
+<tr class="memdesc:a4718a27c58db20d66ac3c511931d475b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies which MPI process to allow messages from.  <a href="class_log.html#a4718a27c58db20d66ac3c511931d475b">More...</a><br /></td></tr>
+<tr class="separator:a4718a27c58db20d66ac3c511931d475b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1cecca268a9c418480a0ac325303f7a0"><td class="memItemLeft" align="right" valign="top"><a id="a1cecca268a9c418480a0ac325303f7a0"></a>
+static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a1cecca268a9c418480a0ac325303f7a0">clear_rank_restriction</a> ()</td></tr>
+<tr class="memdesc:a1cecca268a9c418480a0ac325303f7a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Clears the MPI process rank restriction from messages allowing any process to write to the log (sets <a class="el" href="class_log.html#a47ec200a53bfc6b8b6a39bc91d5dbc86" title="Defaults at -1, when set to a process rank (&gt;= 0) the Log will only print messages if its rank is the...">Log::restricted_rank</a> back to -1). <br /></td></tr>
+<tr class="separator:a1cecca268a9c418480a0ac325303f7a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac02fea24138d69a35521d82ee64bb90d"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#ac02fea24138d69a35521d82ee64bb90d">set_id</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> human_readable_id)</td></tr>
+<tr class="memdesc:ac02fea24138d69a35521d82ee64bb90d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets a human readable thread id for this thread.  <a href="class_log.html#ac02fea24138d69a35521d82ee64bb90d">More...</a><br /></td></tr>
+<tr class="separator:ac02fea24138d69a35521d82ee64bb90d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aecae136e87aadf153c98f4f1f92ac44f"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#aecae136e87aadf153c98f4f1f92ac44f">release_id</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> human_readable_id)</td></tr>
+<tr class="memdesc:aecae136e87aadf153c98f4f1f92ac44f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Releases a the human readable thread id previously set by by the provided human readable id;.  <a href="class_log.html#aecae136e87aadf153c98f4f1f92ac44f">More...</a><br /></td></tr>
+<tr class="separator:aecae136e87aadf153c98f4f1f92ac44f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afdfbb3c30e059607ccf10a6ef5e0de9a"><td class="memItemLeft" align="right" valign="top">static bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#afdfbb3c30e059607ccf10a6ef5e0de9a">at_level</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int8_t</a> level)</td></tr>
+<tr class="memdesc:afdfbb3c30e059607ccf10a6ef5e0de9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Determines if either output level (the file or standard output) level is above the level passed as a parameter.  <a href="class_log.html#afdfbb3c30e059607ccf10a6ef5e0de9a">More...</a><br /></td></tr>
+<tr class="separator:afdfbb3c30e059607ccf10a6ef5e0de9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a805517b44b61d2b5151a2f4794596a7e"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a805517b44b61d2b5151a2f4794596a7e">fatal</a> (const char *format,...)</td></tr>
+<tr class="memdesc:a805517b44b61d2b5151a2f4794596a7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logs a fatal message.  <a href="class_log.html#a805517b44b61d2b5151a2f4794596a7e">More...</a><br /></td></tr>
+<tr class="separator:a805517b44b61d2b5151a2f4794596a7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a89f6eebb445913e66423614839225db2"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a89f6eebb445913e66423614839225db2">error</a> (const char *format,...)</td></tr>
+<tr class="memdesc:a89f6eebb445913e66423614839225db2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logs an error message.  <a href="class_log.html#a89f6eebb445913e66423614839225db2">More...</a><br /></td></tr>
+<tr class="separator:a89f6eebb445913e66423614839225db2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a477d1ab8cce3a2ef12cb8006fa3c6bf5"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a477d1ab8cce3a2ef12cb8006fa3c6bf5">warning</a> (const char *format,...)</td></tr>
+<tr class="memdesc:a477d1ab8cce3a2ef12cb8006fa3c6bf5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logs a warning message.  <a href="class_log.html#a477d1ab8cce3a2ef12cb8006fa3c6bf5">More...</a><br /></td></tr>
+<tr class="separator:a477d1ab8cce3a2ef12cb8006fa3c6bf5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adb225c396180e0d8f73580e71eae6554"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#adb225c396180e0d8f73580e71eae6554">info</a> (const char *format,...)</td></tr>
+<tr class="memdesc:adb225c396180e0d8f73580e71eae6554"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logs an info message.  <a href="class_log.html#adb225c396180e0d8f73580e71eae6554">More...</a><br /></td></tr>
+<tr class="separator:adb225c396180e0d8f73580e71eae6554"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a044ee1254485cb519d0576dc71103f0a"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a044ee1254485cb519d0576dc71103f0a">debug</a> (const char *format,...)</td></tr>
+<tr class="memdesc:a044ee1254485cb519d0576dc71103f0a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logs a debug message.  <a href="class_log.html#a044ee1254485cb519d0576dc71103f0a">More...</a><br /></td></tr>
+<tr class="separator:a044ee1254485cb519d0576dc71103f0a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad0d504bc7f5957a814e9de5ea08f982a"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#ad0d504bc7f5957a814e9de5ea08f982a">trace</a> (const char *format,...)</td></tr>
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+<tr class="separator:ad0d504bc7f5957a814e9de5ea08f982a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad2850dbb9d26c84c3fc2bcecc93493d6"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#ad2850dbb9d26c84c3fc2bcecc93493d6">fatal_no_header</a> (const char *format,...)</td></tr>
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+<tr class="separator:ad2850dbb9d26c84c3fc2bcecc93493d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac3e898dc093679bb7d1e3a3f98872158"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#ac3e898dc093679bb7d1e3a3f98872158">error_no_header</a> (const char *format,...)</td></tr>
+<tr class="memdesc:ac3e898dc093679bb7d1e3a3f98872158"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logs an error message.  <a href="class_log.html#ac3e898dc093679bb7d1e3a3f98872158">More...</a><br /></td></tr>
+<tr class="separator:ac3e898dc093679bb7d1e3a3f98872158"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9bbfa4b8f4fb2262d914f00ba04dd6c6"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a9bbfa4b8f4fb2262d914f00ba04dd6c6">warning_no_header</a> (const char *format,...)</td></tr>
+<tr class="memdesc:a9bbfa4b8f4fb2262d914f00ba04dd6c6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logs a warning message.  <a href="class_log.html#a9bbfa4b8f4fb2262d914f00ba04dd6c6">More...</a><br /></td></tr>
+<tr class="separator:a9bbfa4b8f4fb2262d914f00ba04dd6c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4b4380a986ebf18e448221d78a236bc3"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a4b4380a986ebf18e448221d78a236bc3">info_no_header</a> (const char *format,...)</td></tr>
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+<tr class="separator:a4b4380a986ebf18e448221d78a236bc3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6c4b9de38585df6c03defcbe0e420268"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a6c4b9de38585df6c03defcbe0e420268">debug_no_header</a> (const char *format,...)</td></tr>
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+<tr class="separator:a6c4b9de38585df6c03defcbe0e420268"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5eca5217a6fc23a54cff35ff12ad04f6"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a5eca5217a6fc23a54cff35ff12ad04f6">trace_no_header</a> (const char *format,...)</td></tr>
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+<tr class="separator:a5eca5217a6fc23a54cff35ff12ad04f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-attribs"></a>
+Static Public Attributes</h2></td></tr>
+<tr class="memitem:a44e61f1a4560b557bd8b3374cd87e0e3"><td class="memItemLeft" align="right" valign="top"><a id="a44e61f1a4560b557bd8b3374cd87e0e3"></a>
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+<tr class="memdesc:a44e61f1a4560b557bd8b3374cd87e0e3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies no messages will be logged. <br /></td></tr>
+<tr class="separator:a44e61f1a4560b557bd8b3374cd87e0e3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a829c89b207740611e743a6e2f07e477f"><td class="memItemLeft" align="right" valign="top"><a id="a829c89b207740611e743a6e2f07e477f"></a>
+static const int8_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a829c89b207740611e743a6e2f07e477f">FATAL</a> = 1</td></tr>
+<tr class="memdesc:a829c89b207740611e743a6e2f07e477f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies only fatal messages will be logged. <br /></td></tr>
+<tr class="separator:a829c89b207740611e743a6e2f07e477f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af3c3afdba50a451fd24b6014a9f6e427"><td class="memItemLeft" align="right" valign="top"><a id="af3c3afdba50a451fd24b6014a9f6e427"></a>
+static const int8_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#af3c3afdba50a451fd24b6014a9f6e427">ERROR</a> = 2</td></tr>
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+<tr class="separator:af3c3afdba50a451fd24b6014a9f6e427"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+static const int8_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a02c6c399678d6687f38c6600751aa2e7">WARNING</a> = 3</td></tr>
+<tr class="memdesc:a02c6c399678d6687f38c6600751aa2e7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies warning and above messages will be logged. <br /></td></tr>
+<tr class="separator:a02c6c399678d6687f38c6600751aa2e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a70efafdaaf797f644bb24a8e1c7f5643"><td class="memItemLeft" align="right" valign="top"><a id="a70efafdaaf797f644bb24a8e1c7f5643"></a>
+static const int8_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a70efafdaaf797f644bb24a8e1c7f5643">INFO</a> = 4</td></tr>
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+<tr class="separator:a70efafdaaf797f644bb24a8e1c7f5643"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+static const int8_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#addf4eb67a84c9ee39ed3028005f25e40">DEBUG</a> = 5</td></tr>
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+<tr class="separator:addf4eb67a84c9ee39ed3028005f25e40"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+static const int8_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a696a49a4d58146f0ee69be1562991e12">TRACE</a> = 6</td></tr>
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+<tr class="separator:a696a49a4d58146f0ee69be1562991e12"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4249272125f8149b2d042101bcc6b49f"><td class="memItemLeft" align="right" valign="top"><a id="a4249272125f8149b2d042101bcc6b49f"></a>
+static const int8_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a4249272125f8149b2d042101bcc6b49f">ALL</a> = 7</td></tr>
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+<tr class="separator:a4249272125f8149b2d042101bcc6b49f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-static-methods"></a>
+Static Private Member Functions</h2></td></tr>
+<tr class="memitem:aff6a4531e693fd53ad051c7fef28c6aa"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#aff6a4531e693fd53ad051c7fef28c6aa">write_message</a> (bool print_header, <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int8_t</a> message_level, const char *message_type, const char *format, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/variadic/va_list.html">va_list</a> arguments)</td></tr>
+<tr class="memdesc:aff6a4531e693fd53ad051c7fef28c6aa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Potentially writes the message to either standard output or the log file if the message level is high enough.  <a href="class_log.html#aff6a4531e693fd53ad051c7fef28c6aa">More...</a><br /></td></tr>
+<tr class="separator:aff6a4531e693fd53ad051c7fef28c6aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-static-attribs"></a>
+Static Private Attributes</h2></td></tr>
+<tr class="memitem:a633c6eafa442ecfb3b3322f89496e52e"><td class="memItemLeft" align="right" valign="top">static int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a633c6eafa442ecfb3b3322f89496e52e">std_message_level</a> = <a class="el" href="class_log.html#a70efafdaaf797f644bb24a8e1c7f5643">INFO</a></td></tr>
+<tr class="memdesc:a633c6eafa442ecfb3b3322f89496e52e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies which messages to log.  <a href="class_log.html#a633c6eafa442ecfb3b3322f89496e52e">More...</a><br /></td></tr>
+<tr class="separator:a633c6eafa442ecfb3b3322f89496e52e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a08b261dd43ff89110e602a3a61f6ec61"><td class="memItemLeft" align="right" valign="top">static int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a08b261dd43ff89110e602a3a61f6ec61">file_message_level</a> = <a class="el" href="class_log.html#a70efafdaaf797f644bb24a8e1c7f5643">INFO</a></td></tr>
+<tr class="memdesc:a08b261dd43ff89110e602a3a61f6ec61"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies which messages to log.  <a href="class_log.html#a08b261dd43ff89110e602a3a61f6ec61">More...</a><br /></td></tr>
+<tr class="separator:a08b261dd43ff89110e602a3a61f6ec61"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a20bd437aa24965f6e9650fd5e2d48923"><td class="memItemLeft" align="right" valign="top"><a id="a20bd437aa24965f6e9650fd5e2d48923"></a>
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+<tr class="memdesc:a20bd437aa24965f6e9650fd5e2d48923"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies if the logs should also be written to a flie. <br /></td></tr>
+<tr class="separator:a20bd437aa24965f6e9650fd5e2d48923"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+static int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#aec94f82d0ed91efcb398ce15f2f14a34">max_header_length</a> = 256</td></tr>
+<tr class="memdesc:aec94f82d0ed91efcb398ce15f2f14a34"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the maximum length for the message header. <br /></td></tr>
+<tr class="separator:aec94f82d0ed91efcb398ce15f2f14a34"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5503fcf17f82f95b1090a797af98343c"><td class="memItemLeft" align="right" valign="top"><a id="a5503fcf17f82f95b1090a797af98343c"></a>
+static int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a5503fcf17f82f95b1090a797af98343c">max_message_length</a> = 1024</td></tr>
+<tr class="memdesc:a5503fcf17f82f95b1090a797af98343c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the maximum message buffer length. <br /></td></tr>
+<tr class="separator:a5503fcf17f82f95b1090a797af98343c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a18dc29ac4d511d8eab1bb9bc5771e7bf"><td class="memItemLeft" align="right" valign="top"><a id="a18dc29ac4d511d8eab1bb9bc5771e7bf"></a>
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+<tr class="separator:a18dc29ac4d511d8eab1bb9bc5771e7bf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a814d0d060c29987d5d43d55b3d8d542c"><td class="memItemLeft" align="right" valign="top">static <a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; thread::id, <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a814d0d060c29987d5d43d55b3d8d542c">log_ids</a></td></tr>
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+<tr class="separator:a814d0d060c29987d5d43d55b3d8d542c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad6bd8ce041323bb69e69aeb9edbe12ee"><td class="memItemLeft" align="right" valign="top">static int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#ad6bd8ce041323bb69e69aeb9edbe12ee">process_rank</a> = -1</td></tr>
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+<tr class="separator:ad6bd8ce041323bb69e69aeb9edbe12ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a47ec200a53bfc6b8b6a39bc91d5dbc86"><td class="memItemLeft" align="right" valign="top">static int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#a47ec200a53bfc6b8b6a39bc91d5dbc86">restricted_rank</a> = -1</td></tr>
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+<tr class="separator:a47ec200a53bfc6b8b6a39bc91d5dbc86"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afe8e50d6e52f39d4ed931f13eb49af5f"><td class="memItemLeft" align="right" valign="top"><a id="afe8e50d6e52f39d4ed931f13eb49af5f"></a>
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+<tr class="separator:afe8e50d6e52f39d4ed931f13eb49af5f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa8bf3e23cf88dc4e48aafd791fe93cd7"><td class="memItemLeft" align="right" valign="top">static shared_mutex&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_log.html#aa8bf3e23cf88dc4e48aafd791fe93cd7">log_ids_mutex</a></td></tr>
+<tr class="memdesc:aa8bf3e23cf88dc4e48aafd791fe93cd7"><td class="mdescLeft">&#160;</td><td class="mdescRight">A std::shared_mutex protecting the Log::thread_ids map.  <a href="class_log.html#aa8bf3e23cf88dc4e48aafd791fe93cd7">More...</a><br /></td></tr>
+<tr class="separator:aa8bf3e23cf88dc4e48aafd791fe93cd7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="afdfbb3c30e059607ccf10a6ef5e0de9a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afdfbb3c30e059607ccf10a6ef5e0de9a">&#9670;&nbsp;</a></span>at_level()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool Log::at_level </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int8_t</a>&#160;</td>
+          <td class="paramname"><em>level</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Determines if either output level (the file or standard output) level is above the level passed as a parameter. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">level</td><td>is the level to be greater than or equal to</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if either the file or standard output level is greater than or equal to the passed level </dd></dl>
+
+</div>
+</div>
+<a id="a044ee1254485cb519d0576dc71103f0a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a044ee1254485cb519d0576dc71103f0a">&#9670;&nbsp;</a></span>debug()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::debug </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs a debug message. </p>
+<p>varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="a6c4b9de38585df6c03defcbe0e420268"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6c4b9de38585df6c03defcbe0e420268">&#9670;&nbsp;</a></span>debug_no_header()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::debug_no_header </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs a debug message. </p>
+<p>Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="a89f6eebb445913e66423614839225db2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a89f6eebb445913e66423614839225db2">&#9670;&nbsp;</a></span>error()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::error </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs an error message. </p>
+<p>varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="ac3e898dc093679bb7d1e3a3f98872158"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac3e898dc093679bb7d1e3a3f98872158">&#9670;&nbsp;</a></span>error_no_header()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::error_no_header </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs an error message. </p>
+<p>Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="a805517b44b61d2b5151a2f4794596a7e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a805517b44b61d2b5151a2f4794596a7e">&#9670;&nbsp;</a></span>fatal()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::fatal </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs a fatal message. </p>
+<p>varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="ad2850dbb9d26c84c3fc2bcecc93493d6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad2850dbb9d26c84c3fc2bcecc93493d6">&#9670;&nbsp;</a></span>fatal_no_header()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::fatal_no_header </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs a fatal message. </p>
+<p>Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="adb225c396180e0d8f73580e71eae6554"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adb225c396180e0d8f73580e71eae6554">&#9670;&nbsp;</a></span>info()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::info </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs an info message. </p>
+<p>varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="a4b4380a986ebf18e448221d78a236bc3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4b4380a986ebf18e448221d78a236bc3">&#9670;&nbsp;</a></span>info_no_header()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::info_no_header </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs an info message. </p>
+<p>Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="afc35697517d849ab8cf4a774d2b32ba8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc35697517d849ab8cf4a774d2b32ba8">&#9670;&nbsp;</a></span>initialize()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::initialize </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>arguments</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Initializes the <a class="el" href="class_log.html">Log</a> given arguments retreived from the CommandLine class. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">arguments</td><td>the command line arguments <a class="el" href="class_log.html#a1e95d22090ba14b096609c67487f9761" title="Registers used command line arguments and instructions with the CommandLine class.">Log::register_command_line_arguments()</a> must be called before <a class="el" href="class_log.html#afc35697517d849ab8cf4a774d2b32ba8" title="Initializes the Log given arguments retreived from the CommandLine class.">Log::initialize()</a> </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a92a5eb55bc8e480aa984d6d592f07d69"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a92a5eb55bc8e480aa984d6d592f07d69">&#9670;&nbsp;</a></span>parse_level_from_string()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int8_t</a> Log::parse_level_from_string </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>level</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">a</td><td>string representation of the message level, either as text (e.g., "INFO") or as a number (e.g., 4)</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>the message level as an int8_t (i.e., one of the message level constants) </dd></dl>
+
+</div>
+</div>
+<a id="a1e95d22090ba14b096609c67487f9761"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1e95d22090ba14b096609c67487f9761">&#9670;&nbsp;</a></span>register_command_line_arguments()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::register_command_line_arguments </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Registers used command line arguments and instructions with the CommandLine class. </p>
+<p>Needs to be called at the beginning of the main method of any programming using the <a class="el" href="class_log.html">Log</a> class. Will register the following command line arguments and instructions:</p><ol type="1">
+<li>log_level : specifies the max message level of messages to be printed</li>
+<li>log_directory : specifies the output directory for message logs </li>
+</ol>
+
+</div>
+</div>
+<a id="aecae136e87aadf153c98f4f1f92ac44f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aecae136e87aadf153c98f4f1f92ac44f">&#9670;&nbsp;</a></span>release_id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::release_id </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>human_readable_id</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Releases a the human readable thread id previously set by by the provided human readable id;. </p>
+<p>This will report an error and exit if this human readable id has not already been set, or if it has been relased by another thread.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">human_readable_id</td><td>is a human readable thread id which has previously been set with <a class="el" href="class_log.html#ac02fea24138d69a35521d82ee64bb90d" title="Sets a human readable thread id for this thread.">Log::set_id(string)</a> </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a4718a27c58db20d66ac3c511931d475b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4718a27c58db20d66ac3c511931d475b">&#9670;&nbsp;</a></span>restrict_to_rank()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::restrict_to_rank </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a>&#160;</td>
+          <td class="paramname"><em>_restricted_rank</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies which MPI process to allow messages from. </p>
+<p>A value &lt; 0 will allow messages from any rank. </p><dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">_restricted_rank</td><td>is the MPI rank to only print messages from </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ac02fea24138d69a35521d82ee64bb90d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac02fea24138d69a35521d82ee64bb90d">&#9670;&nbsp;</a></span>set_id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::set_id </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>human_readable_id</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets a human readable thread id for this thread. </p>
+<p>This will use <a class="elRef" href="http://en.cppreference.com/w/cpp/thread/get_id.html">std::this_thread::get_id()</a> to get c++'s automatically generated thread id, and then put it in the Log::thread_ids map, so it can be used to write cleaner logs.</p>
+<p>This will report an error and exit if another thread has already reserved this human readable id.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">human_readable_id</td><td>a human readable thread id </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a6183417026fe34b0d1494f1504b52b8f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6183417026fe34b0d1494f1504b52b8f">&#9670;&nbsp;</a></span>set_rank()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::set_rank </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a>&#160;</td>
+          <td class="paramname"><em>_process_rank</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets the MPI process rank for this <a class="el" href="class_log.html">Log</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">_process_rank</td><td>is the MPI rank of this process </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ad0d504bc7f5957a814e9de5ea08f982a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad0d504bc7f5957a814e9de5ea08f982a">&#9670;&nbsp;</a></span>trace()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::trace </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs a trace message. </p>
+<p>varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="a5eca5217a6fc23a54cff35ff12ad04f6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5eca5217a6fc23a54cff35ff12ad04f6">&#9670;&nbsp;</a></span>trace_no_header()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::trace_no_header </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs a trace message. </p>
+<p>Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="a477d1ab8cce3a2ef12cb8006fa3c6bf5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a477d1ab8cce3a2ef12cb8006fa3c6bf5">&#9670;&nbsp;</a></span>warning()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::warning </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs a warning message. </p>
+<p>varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="a9bbfa4b8f4fb2262d914f00ba04dd6c6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9bbfa4b8f4fb2262d914f00ba04dd6c6">&#9670;&nbsp;</a></span>warning_no_header()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::warning_no_header </td>
+          <td>(</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>...</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logs a warning message. </p>
+<p>Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. </p>
+
+</div>
+</div>
+<a id="aff6a4531e693fd53ad051c7fef28c6aa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aff6a4531e693fd53ad051c7fef28c6aa">&#9670;&nbsp;</a></span>write_message()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Log::write_message </td>
+          <td>(</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>print_header</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int8_t</a>&#160;</td>
+          <td class="paramname"><em>message_level</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>message_type</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>format</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/utility/variadic/va_list.html">va_list</a>&#160;</td>
+          <td class="paramname"><em>arguments</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Potentially writes the message to either standard output or the log file if the message level is high enough. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">print_header</td><td>specifies if the header to the message should be printed out </td></tr>
+    <tr><td class="paramname">message_level</td><td>the level of the message to potentially be printed out </td></tr>
+    <tr><td class="paramname">message_type</td><td>a string representation of this message type </td></tr>
+    <tr><td class="paramname">message_type</td><td>the format string for this message (as in printf) </td></tr>
+    <tr><td class="paramname">arguments</td><td>the arguments for the print statement </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a08b261dd43ff89110e602a3a61f6ec61"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a08b261dd43ff89110e602a3a61f6ec61">&#9670;&nbsp;</a></span>file_message_level</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Log::file_message_level = <a class="el" href="class_log.html#a70efafdaaf797f644bb24a8e1c7f5643">INFO</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies which messages to log. </p>
+<p>Messages will be written to the log file if their type is &lt;= message_level. </p>
+
+</div>
+</div>
+<a id="a814d0d060c29987d5d43d55b3d8d542c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a814d0d060c29987d5d43d55b3d8d542c">&#9670;&nbsp;</a></span>log_ids</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; thread::id, <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; Log::log_ids</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>A map of C++ thread ids (which are not human readable) to human readable integer ids. </p>
+<p>Thread ids are specified with the <a class="el" href="class_log.html#ac02fea24138d69a35521d82ee64bb90d" title="Sets a human readable thread id for this thread.">Log::set_id(string)</a> method. </p>
+
+</div>
+</div>
+<a id="aa8bf3e23cf88dc4e48aafd791fe93cd7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa8bf3e23cf88dc4e48aafd791fe93cd7">&#9670;&nbsp;</a></span>log_ids_mutex</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">shared_mutex Log::log_ids_mutex</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>A std::shared_mutex protecting the Log::thread_ids map. </p>
+<p>The Log::set_thread_id(int32_t) mehod needs write access so it will use the std::shared_mutex::lock()x and std::shared_mutex()::unlock() mechanism, while the Log::get_thread_id() only needs read access and can used the std::shared_mutex::lock_shared() and std::shared_mutex::unlock_shared() methods. </p>
+
+</div>
+</div>
+<a id="ad6bd8ce041323bb69e69aeb9edbe12ee"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad6bd8ce041323bb69e69aeb9edbe12ee">&#9670;&nbsp;</a></span>process_rank</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Log::process_rank = -1</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The MPI process rank for this <a class="el" href="class_log.html">Log</a> instance. </p>
+<p>Set to -1 if not specified or not using MPI. </p>
+
+</div>
+</div>
+<a id="a47ec200a53bfc6b8b6a39bc91d5dbc86"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a47ec200a53bfc6b8b6a39bc91d5dbc86">&#9670;&nbsp;</a></span>restricted_rank</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Log::restricted_rank = -1</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Defaults at -1, when set to a process rank (&gt;= 0) the <a class="el" href="class_log.html">Log</a> will only print messages if its rank is the same as the restricted rank. </p>
+<p>This is useful, for allowing initialization messages to only be printed out by a single process. </p>
+
+</div>
+</div>
+<a id="a633c6eafa442ecfb3b3322f89496e52e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a633c6eafa442ecfb3b3322f89496e52e">&#9670;&nbsp;</a></span>std_message_level</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Log::std_message_level = <a class="el" href="class_log.html#a70efafdaaf797f644bb24a8e1c7f5643">INFO</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies which messages to log. </p>
+<p>Messages will be written to the standard output log if their type is &lt;= message_level. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>common/<a class="el" href="log_8hxx_source.html">log.hxx</a></li>
+<li>common/log.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_log_file-members.html b/docs/html/class_log_file-members.html
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+++ b/docs/html/class_log_file-members.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
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+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">LogFile Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_log_file.html">LogFile</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>file</b> (defined in <a class="el" href="class_log_file.html">LogFile</a>)</td><td class="entry"><a class="el" href="class_log_file.html">LogFile</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>file_mutex</b> (defined in <a class="el" href="class_log_file.html">LogFile</a>)</td><td class="entry"><a class="el" href="class_log_file.html">LogFile</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>Log</b> (defined in <a class="el" href="class_log_file.html">LogFile</a>)</td><td class="entry"><a class="el" href="class_log_file.html">LogFile</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>LogFile</b>(FILE *file) (defined in <a class="el" href="class_log_file.html">LogFile</a>)</td><td class="entry"><a class="el" href="class_log_file.html">LogFile</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_log_file.html b/docs/html/class_log_file.html
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+++ b/docs/html/class_log_file.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: LogFile Class Reference</title>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
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+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_log_file-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">LogFile Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aa12e8d10af350349c814ccf6b8db0492"><td class="memItemLeft" align="right" valign="top"><a id="aa12e8d10af350349c814ccf6b8db0492"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>LogFile</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/io/c.html">FILE</a> *file)</td></tr>
+<tr class="separator:aa12e8d10af350349c814ccf6b8db0492"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a816eeda13280b7a06ced4b9695e0b126"><td class="memItemLeft" align="right" valign="top"><a id="a816eeda13280b7a06ced4b9695e0b126"></a>
+FILE *&#160;</td><td class="memItemRight" valign="bottom"><b>file</b></td></tr>
+<tr class="separator:a816eeda13280b7a06ced4b9695e0b126"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1f6b5b1f5363cf079b7f46f7b6fa75f7"><td class="memItemLeft" align="right" valign="top"><a id="a1f6b5b1f5363cf079b7f46f7b6fa75f7"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/thread/mutex.html">mutex</a>&#160;</td><td class="memItemRight" valign="bottom"><b>file_mutex</b></td></tr>
+<tr class="separator:a1f6b5b1f5363cf079b7f46f7b6fa75f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:acd1b2a0733103b7bbeb76b467ea85446"><td class="memItemLeft" align="right" valign="top"><a id="acd1b2a0733103b7bbeb76b467ea85446"></a>
+class&#160;</td><td class="memItemRight" valign="bottom"><b>Log</b></td></tr>
+<tr class="separator:acd1b2a0733103b7bbeb76b467ea85446"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>common/<a class="el" href="log_8hxx_source.html">log.hxx</a></li>
+<li>common/log.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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diff --git a/docs/html/class_m_g_u___node-members.html b/docs/html/class_m_g_u___node-members.html
new file mode 100644
index 00000000..0123207a
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+++ b/docs/html/class_m_g_u___node-members.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">MGU_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_m_g_u___node.html">MGU_Node</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_f_bias</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_fu</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_fw</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_h_bias</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_h_prev</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_hu</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_hw</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_fired</b>(int time, double error) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>f</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>f_bias</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>fu</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>fw</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gradient</b>(string gradient_name) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>h_bias</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>h_tanh</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>hu</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>hw</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng1_1, double range) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired</b>(int time, double incoming_output) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_f</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ld_h_tanh</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>MGU_Node</b>(int _innovation_number, int _layer_type, double _depth) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(int time, double delta) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_gradient</b>(string gradient_name) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset</b>(int _series_length) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>try_update_deltas</b>(int time) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~MGU_Node</b>() (defined in <a class="el" href="class_m_g_u___node.html">MGU_Node</a>)</td><td class="entry"><a class="el" href="class_m_g_u___node.html">MGU_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: MGU_Node Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_m_g_u___node-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">MGU_Node Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for MGU_Node:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_m_g_u___node.png" usemap="#MGU_5FNode_map" alt=""/>
+  <map id="MGU_5FNode_map" name="MGU_5FNode_map">
+<area href="class_r_n_n___node___interface.html" alt="RNN_Node_Interface" shape="rect" coords="0,0,132,24"/>
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+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:adbfa27b40e21775d40f408f4a13cc961"><td class="memItemLeft" align="right" valign="top"><a id="adbfa27b40e21775d40f408f4a13cc961"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>MGU_Node</b> (int _innovation_number, int _layer_type, double _depth)</td></tr>
+<tr class="separator:adbfa27b40e21775d40f408f4a13cc961"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af97bed43890644f139a45e2dd38417ee"><td class="memItemLeft" align="right" valign="top"><a id="af97bed43890644f139a45e2dd38417ee"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_lamarckian</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double mu, double sigma)</td></tr>
+<tr class="separator:af97bed43890644f139a45e2dd38417ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_xavier</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng1_1, double range)</td></tr>
+<tr class="separator:ae01aaf9fde23c982d87fe4745bf4f99e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_kaiming</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double range)</td></tr>
+<tr class="separator:a84e89c422e46633eb6e9a4141a128c05"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_uniform_random</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_gradient</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> gradient_name)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>print_gradient</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> gradient_name)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>input_fired</b> (int time, double incoming_output)</td></tr>
+<tr class="separator:a7342ba8dae3a741759af7b3028a7acbd"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>try_update_deltas</b> (int time)</td></tr>
+<tr class="separator:a245f2d12613e4b369c3d6fba651668eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>error_fired</b> (int time, double error)</td></tr>
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+uint32_t&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_weights</b> () const</td></tr>
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+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="mgu__node_8hxx_source.html">mgu_node.hxx</a></li>
+<li>rnn/mgu_node.cxx</li>
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+<div class="title">MosaicImages Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_mosaic_images.html">MosaicImages</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>calculate_avg_std_dev</b>() (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>channel_avg</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>channel_std_dev</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>channels</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>class_sizes</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy_image</b>(int i) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>filenames</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_average</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_channel_avg</b>(int channel) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_channel_std_dev</b>(int channel) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_class_size</b>(int i) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_classification</b>(int subimage) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_filename</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_image_channels</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_classification</b>(int image) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_image_height</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_width</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_large_image_channels</b>(int image) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_large_image_height</b>(int image) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_large_image_width</b>(int image) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_mosaic_pixels</b>(string filename, vector&lt; vector&lt; vector&lt; uint8_t &gt; &gt; &gt; &amp;pixels, uint32_t &amp;height, uint32_t &amp;width) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_classes</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_images</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_large_images</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_subimages</b>(int i) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_padding</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_pixel</b>(int subimage, int z, int y, int x) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_raw_pixel</b>(int subimage, int z, int y, int x) const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_std_dev</b>() const (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>images</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_counts</b>(const vector&lt; vector&lt; int &gt; &gt; &amp;classes) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>MosaicImages</b>(vector&lt; string &gt; _filenames, const vector&lt; vector&lt; Point &gt; &gt; &amp;_box_centers, int _box_radius, const vector&lt; vector&lt; int &gt; &gt; &amp;_box_classes, int _padding, int _subimage_height, int _subimage_width) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>MosaicImages</b>(vector&lt; string &gt; _filenames, const vector&lt; vector&lt; Point &gt; &gt; &amp;_box_centers, int _box_radius, const vector&lt; vector&lt; int &gt; &gt; &amp;_box_classes, int _padding, int _subimage_height, int _subimage_width, const vector&lt; float &gt; &amp;_channel_avg, const vector&lt; float &gt; &amp;_channel_std_dev) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>MosaicImages</b>(vector&lt; string &gt; _filenames, const vector&lt; vector&lt; Line &gt; &gt; &amp;_lines, int _line_height, const vector&lt; vector&lt; int &gt; &gt; &amp;_line_classes, int _padding, int _subimage_height, int _subimage_width) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>MosaicImages</b>(vector&lt; string &gt; _filenames, const vector&lt; vector&lt; Line &gt; &gt; &amp;_lines, int _line_height, const vector&lt; vector&lt; int &gt; &gt; &amp;_line_classes, int _padding, int _subimage_height, int _subimage_width, const vector&lt; float &gt; &amp;_channel_avg, const vector&lt; float &gt; &amp;_channel_std_dev) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize</b>() (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>number_classes</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_images</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>padding</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>read_mosaic</b>(string filename, const vector&lt; Point &gt; &amp;box_centers, int box_radius, const vector&lt; int &gt; &amp;box_classes) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>read_mosaic</b>(string filename, const vector&lt; Line &gt; &amp;lines, int line_height, const vector&lt; int &gt; &amp;line_classes) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_alpha</b>(int i, const vector&lt; vector&lt; float &gt; &gt; &amp;_alpha) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_alpha</b>(int i, const vector&lt; vector&lt; uint8_t &gt; &gt; &amp;_alpha) (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>subimage_height</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>subimage_width</b> (defined in <a class="el" href="class_mosaic_images.html">MosaicImages</a>)</td><td class="entry"><a class="el" href="class_mosaic_images.html">MosaicImages</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: MosaicImages Class Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_mosaic_images-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">MosaicImages Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for MosaicImages:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_mosaic_images.png" usemap="#MosaicImages_map" alt=""/>
+  <map id="MosaicImages_map" name="MosaicImages_map">
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+<area href="class_images_interface.html" alt="ImagesInterface" shape="rect" coords="0,0,128,24"/>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="memitem:aac889fdea29db07b12f263cc9a825d6b"><td class="memItemLeft" align="right" valign="top"><a id="aac889fdea29db07b12f263cc9a825d6b"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>get_mosaic_pixels</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> filename, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; uint8_t &gt; &gt; &gt; &amp;pixels, uint32_t &amp;height, uint32_t &amp;width)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>read_mosaic</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> filename, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_point.html">Point</a> &gt; &amp;box_centers, int box_radius, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int &gt; &amp;box_classes)</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_large_images</b> () const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>number_images</b></td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>subimage_width</b></td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>subimage_height</b></td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_large_image.html">LargeImage</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>images</b></td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; float &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>channel_avg</b></td></tr>
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+<tr class="separator:a2aac949f567bbf8c2805c4131b76dfe4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>image_tools/<a class="el" href="mosaic__image__set_8hxx_source.html">mosaic_image_set.hxx</a></li>
+<li>image_tools/mosaic_image_set.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
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+<table cellspacing="0" cellpadding="0">
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">MultiImagesInterface Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_average</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_channel_avg</b>(int channel) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_channel_std_dev</b>(int channel) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_class_size</b>(int i) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_classification</b>(int image) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_filename</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_channels</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_image_classification</b>(int image) const =0 (defined in <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>)</td><td class="entry"><a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_image_height</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_image_width</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_large_image_channels</b>(int image) const =0 (defined in <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>)</td><td class="entry"><a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_large_image_height</b>(int image) const =0 (defined in <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>)</td><td class="entry"><a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_large_image_width</b>(int image) const =0 (defined in <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>)</td><td class="entry"><a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_classes</b>() const =0 (defined in <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>)</td><td class="entry"><a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_images</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_large_images</b>() const =0 (defined in <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>)</td><td class="entry"><a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_subimages</b>(int i) const =0 (defined in <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>)</td><td class="entry"><a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_padding</b>() const =0 (defined in <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>)</td><td class="entry"><a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_pixel</b>(int image, int z, int y, int x) const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_raw_pixel</b>(int subimage, int z, int y, int x) const =0 (defined in <a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a>)</td><td class="entry"><a class="el" href="class_multi_images_interface.html">MultiImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_std_dev</b>() const =0 (defined in <a class="el" href="class_images_interface.html">ImagesInterface</a>)</td><td class="entry"><a class="el" href="class_images_interface.html">ImagesInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="class_multi_images_interface-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">MultiImagesInterface Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div>  </div>
+</div><!--header-->
+<div class="contents">
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+<div class="dyncontent">
+ <div class="center">
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+virtual int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_subimages</b> (int i) const =0</td></tr>
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+virtual int&#160;</td><td class="memItemRight" valign="bottom"><b>get_large_image_channels</b> (int image) const =0</td></tr>
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+virtual float&#160;</td><td class="memItemRight" valign="bottom"><b>get_raw_pixel</b> (int subimage, int z, int y, int x) const =0</td></tr>
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+<tr class="separator:a3a26b620cf600922d3572c41d7d43c38 inherit pub_methods_class_images_interface"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>image_tools/<a class="el" href="image__set__interface_8hxx_source.html">image_set_interface.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">NeatSpeciationStrategy Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>check_population</b>() (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>check_species</b>() (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>fitness_threshold</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generate_for_species</b>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, function&lt; void(int32_t, RNN_Genome *)&gt; &amp;mutate, function&lt; RNN_Genome *(RNN_Genome *, RNN_Genome *)&gt; &amp;crossover) (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#ae86f8696ddab1b6cc595b6e2ef0371ae">generate_genome</a>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, function&lt; void(int32_t, RNN_Genome *)&gt; &amp;mutate, function&lt; RNN_Genome *(RNN_Genome *, RNN_Genome *)&gt; &amp;crossover)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#aa2ecd78ba30f3cc72d2bf1367d5899bc">generated_genomes</a></td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#a8c33c9c76990e80839167c2791773bfd">generation_species</a></td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generator</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99">get_best_fitness</a>()</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#aecf62aeba94c1f8d786215c10ea4774b">get_best_genome</a>()</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_distance</b>(RNN_Genome *g1, RNN_Genome *g2) (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_exceed_number</b>(vector&lt; int32_t &gt; v1, vector&lt; int32_t &gt; v2) (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#af7e48fd1afb5a9c1b422ad251366263e">get_generated_genomes</a>() const</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_global_best_genome</b>() (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#aba55a9f0006af882fd613bd0676555eb">get_inserted_genomes</a>() const</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_random_species_list</b>() (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#a0117c886c0aedbb22e8f4ee6803ab669">get_strategy_information_headers</a>() const</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#a3f5175b016921853c2e9461475bff164">get_strategy_information_values</a>() const</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#acbd3eaa05db725de60074276cd0bb449">get_worst_fitness</a>()</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#a8bc6ad6a0740e2f6072aef3ad14dd3f7">get_worst_genome</a>()</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>global_best_genome</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#aa2b2521a400435cbd1856aadda2051e0">insert_genome</a>(RNN_Genome *genome)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#a863ed8485d76c0a036f7a533148888e8">inserted_genomes</a></td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#ae407ee52a926c60746041987e60f1ecd">inter_island_crossover_rate</a></td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#ae212edf21f96938c934ad7f824f5d4d7">intra_island_crossover_rate</a></td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>max_genomes</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#ab991acafcd0032a3b7b54feae384414d">minimal_genome</a></td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#aacd4a3966b8d8578b3cc1f67c03485b2">mutation_rate</a></td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>neat_c1</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>neat_c2</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>neat_c3</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>Neat_Species</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>NeatSpeciationStrategy</b>(double _mutation_rate, double _intra_island_crossover_rate, double _inter_island_crossover_rate, RNN_Genome *_seed_genome, int32_t _max_genomes, double _species_threshold, double _fitness_threshold, double _neat_c1, double _neat_c2, double _neat_c3, minstd_rand0 &amp;_generator) (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#aa9cf3794cccbfabb1d4e32897bf3a965">population_not_improving_count</a></td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_neat_speciation_strategy.html#abef17e0293c2e0a64b3b4b3b9b7775d2">print</a>(string indent=&quot;&quot;) const</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>rank_species</b>() (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>species_count</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>species_threshold</b> (defined in <a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_neat_speciation_strategy-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">NeatSpeciationStrategy Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for NeatSpeciationStrategy:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_neat_speciation_strategy.png" usemap="#NeatSpeciationStrategy_map" alt=""/>
+  <map id="NeatSpeciationStrategy_map" name="NeatSpeciationStrategy_map">
+<area href="class_speciation_strategy.html" alt="SpeciationStrategy" shape="rect" coords="0,0,144,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a903c5e6d68d601d30ae70c5235895a13"><td class="memItemLeft" align="right" valign="top"><a id="a903c5e6d68d601d30ae70c5235895a13"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>NeatSpeciationStrategy</b> (double _mutation_rate, double _intra_island_crossover_rate, double _inter_island_crossover_rate, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *_seed_genome, int32_t _max_genomes, double _species_threshold, double _fitness_threshold, double _neat_c1, double _neat_c2, double _neat_c3, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;_generator)</td></tr>
+<tr class="separator:a903c5e6d68d601d30ae70c5235895a13"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af7e48fd1afb5a9c1b422ad251366263e"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#af7e48fd1afb5a9c1b422ad251366263e">get_generated_genomes</a> () const</td></tr>
+<tr class="separator:af7e48fd1afb5a9c1b422ad251366263e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aba55a9f0006af882fd613bd0676555eb"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#aba55a9f0006af882fd613bd0676555eb">get_inserted_genomes</a> () const</td></tr>
+<tr class="separator:aba55a9f0006af882fd613bd0676555eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99">get_best_fitness</a> ()</td></tr>
+<tr class="memdesc:a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the fitness of the best genome of all the islands.  <a href="class_neat_speciation_strategy.html#a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99">More...</a><br /></td></tr>
+<tr class="separator:a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acbd3eaa05db725de60074276cd0bb449"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#acbd3eaa05db725de60074276cd0bb449">get_worst_fitness</a> ()</td></tr>
+<tr class="memdesc:acbd3eaa05db725de60074276cd0bb449"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the fitness of the worst genome of all the islands.  <a href="class_neat_speciation_strategy.html#acbd3eaa05db725de60074276cd0bb449">More...</a><br /></td></tr>
+<tr class="separator:acbd3eaa05db725de60074276cd0bb449"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aecf62aeba94c1f8d786215c10ea4774b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#aecf62aeba94c1f8d786215c10ea4774b">get_best_genome</a> ()</td></tr>
+<tr class="memdesc:aecf62aeba94c1f8d786215c10ea4774b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the best genome of all the islands.  <a href="class_neat_speciation_strategy.html#aecf62aeba94c1f8d786215c10ea4774b">More...</a><br /></td></tr>
+<tr class="separator:aecf62aeba94c1f8d786215c10ea4774b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8bc6ad6a0740e2f6072aef3ad14dd3f7"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#a8bc6ad6a0740e2f6072aef3ad14dd3f7">get_worst_genome</a> ()</td></tr>
+<tr class="memdesc:a8bc6ad6a0740e2f6072aef3ad14dd3f7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the the worst genome of all the islands.  <a href="class_neat_speciation_strategy.html#a8bc6ad6a0740e2f6072aef3ad14dd3f7">More...</a><br /></td></tr>
+<tr class="separator:a8bc6ad6a0740e2f6072aef3ad14dd3f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa2b2521a400435cbd1856aadda2051e0"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#aa2b2521a400435cbd1856aadda2051e0">insert_genome</a> (<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *genome)</td></tr>
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+<tr class="separator:aa2b2521a400435cbd1856aadda2051e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae86f8696ddab1b6cc595b6e2ef0371ae"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#ae86f8696ddab1b6cc595b6e2ef0371ae">generate_genome</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(int32_t, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;mutate, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover)</td></tr>
+<tr class="memdesc:ae86f8696ddab1b6cc595b6e2ef0371ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates a new genome.  <a href="class_neat_speciation_strategy.html#ae86f8696ddab1b6cc595b6e2ef0371ae">More...</a><br /></td></tr>
+<tr class="separator:ae86f8696ddab1b6cc595b6e2ef0371ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0c58ebbcfbc29127d02378a46ecfcb19"><td class="memItemLeft" align="right" valign="top"><a id="a0c58ebbcfbc29127d02378a46ecfcb19"></a>
+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>generate_for_species</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(int32_t, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;mutate, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover)</td></tr>
+<tr class="separator:a0c58ebbcfbc29127d02378a46ecfcb19"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abef17e0293c2e0a64b3b4b3b9b7775d2"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#abef17e0293c2e0a64b3b4b3b9b7775d2">print</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> indent=&quot;&quot;) const</td></tr>
+<tr class="memdesc:abef17e0293c2e0a64b3b4b3b9b7775d2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prints out all the island's populations.  <a href="class_neat_speciation_strategy.html#abef17e0293c2e0a64b3b4b3b9b7775d2">More...</a><br /></td></tr>
+<tr class="separator:abef17e0293c2e0a64b3b4b3b9b7775d2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0117c886c0aedbb22e8f4ee6803ab669"><td class="memItemLeft" align="right" valign="top"><a id="a0117c886c0aedbb22e8f4ee6803ab669"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#a0117c886c0aedbb22e8f4ee6803ab669">get_strategy_information_headers</a> () const</td></tr>
+<tr class="memdesc:a0117c886c0aedbb22e8f4ee6803ab669"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets speciation strategy information headers for logs. <br /></td></tr>
+<tr class="separator:a0117c886c0aedbb22e8f4ee6803ab669"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3f5175b016921853c2e9461475bff164"><td class="memItemLeft" align="right" valign="top"><a id="a3f5175b016921853c2e9461475bff164"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#a3f5175b016921853c2e9461475bff164">get_strategy_information_values</a> () const</td></tr>
+<tr class="memdesc:a3f5175b016921853c2e9461475bff164"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets speciation strategy information values for logs. <br /></td></tr>
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+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>get_global_best_genome</b> ()</td></tr>
+<tr class="separator:a2047928c8e521b5f039ab374628b6c8f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa4fe2ee6a14cf1dcf0174c79033f0399"><td class="memItemLeft" align="right" valign="top"><a id="aa4fe2ee6a14cf1dcf0174c79033f0399"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int32_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_random_species_list</b> ()</td></tr>
+<tr class="separator:aa4fe2ee6a14cf1dcf0174c79033f0399"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_distance</b> (<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *g1, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *g2)</td></tr>
+<tr class="separator:acd0cc1b9a7b4a72dbac191d9cb384912"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_exceed_number</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int32_t &gt; v1, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int32_t &gt; v2)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>rank_species</b> ()</td></tr>
+<tr class="separator:a5b617be236a503807bf3617bf4a30bf6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>check_population</b> ()</td></tr>
+<tr class="separator:adc2f2a0cacd0bb4efcd2d2dda51dedce"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>check_species</b> ()</td></tr>
+<tr class="separator:aff8357ced2aa6777899749f62dc22a5d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a8c33c9c76990e80839167c2791773bfd"><td class="memItemLeft" align="right" valign="top"><a id="a8c33c9c76990e80839167c2791773bfd"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#a8c33c9c76990e80839167c2791773bfd">generation_species</a></td></tr>
+<tr class="memdesc:a8c33c9c76990e80839167c2791773bfd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Used to track which island to generate the next genome from. <br /></td></tr>
+<tr class="separator:a8c33c9c76990e80839167c2791773bfd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a65363f273bd436b14d5b31e01bfd4778"><td class="memItemLeft" align="right" valign="top"><a id="a65363f273bd436b14d5b31e01bfd4778"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><b>species_count</b></td></tr>
+<tr class="separator:a65363f273bd436b14d5b31e01bfd4778"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa9cf3794cccbfabb1d4e32897bf3a965"><td class="memItemLeft" align="right" valign="top"><a id="aa9cf3794cccbfabb1d4e32897bf3a965"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#aa9cf3794cccbfabb1d4e32897bf3a965">population_not_improving_count</a></td></tr>
+<tr class="memdesc:aa9cf3794cccbfabb1d4e32897bf3a965"><td class="mdescLeft">&#160;</td><td class="mdescRight">&lt; Used to keep track of the number of species generated . <br /></td></tr>
+<tr class="separator:aa9cf3794cccbfabb1d4e32897bf3a965"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a63e36d8b6a91d1f2ce76dd84606f5865"><td class="memItemLeft" align="right" valign="top"><a id="a63e36d8b6a91d1f2ce76dd84606f5865"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>species_threshold</b></td></tr>
+<tr class="separator:a63e36d8b6a91d1f2ce76dd84606f5865"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>fitness_threshold</b></td></tr>
+<tr class="separator:a24ce4ebee07701d240dbcc6a4e9561d2"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>neat_c1</b></td></tr>
+<tr class="separator:a0eb7a7bb185e655c8cdd928321aaeee1"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>neat_c2</b></td></tr>
+<tr class="separator:a0554532c31c545b4c8d5d6a073699145"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2bf558da2a6715ee6d8ae1e17ee7c6aa"><td class="memItemLeft" align="right" valign="top"><a id="a2bf558da2a6715ee6d8ae1e17ee7c6aa"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>neat_c3</b></td></tr>
+<tr class="separator:a2bf558da2a6715ee6d8ae1e17ee7c6aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:aacd4a3966b8d8578b3cc1f67c03485b2"><td class="mdescLeft">&#160;</td><td class="mdescRight">How frequently to do mutations.  <a href="class_neat_speciation_strategy.html#aacd4a3966b8d8578b3cc1f67c03485b2">More...</a><br /></td></tr>
+<tr class="separator:aacd4a3966b8d8578b3cc1f67c03485b2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae212edf21f96938c934ad7f824f5d4d7"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#ae212edf21f96938c934ad7f824f5d4d7">intra_island_crossover_rate</a></td></tr>
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+<tr class="separator:ae212edf21f96938c934ad7f824f5d4d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae407ee52a926c60746041987e60f1ecd"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#ae407ee52a926c60746041987e60f1ecd">inter_island_crossover_rate</a></td></tr>
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+<tr class="separator:ae407ee52a926c60746041987e60f1ecd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa2ecd78ba30f3cc72d2bf1367d5899bc"><td class="memItemLeft" align="right" valign="top"><a id="aa2ecd78ba30f3cc72d2bf1367d5899bc"></a>
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+<tr class="memdesc:aa2ecd78ba30f3cc72d2bf1367d5899bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">How many genomes have been generated by this speciation strategy. <br /></td></tr>
+<tr class="separator:aa2ecd78ba30f3cc72d2bf1367d5899bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a863ed8485d76c0a036f7a533148888e8"><td class="memItemLeft" align="right" valign="top"><a id="a863ed8485d76c0a036f7a533148888e8"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_neat_speciation_strategy.html#a863ed8485d76c0a036f7a533148888e8">inserted_genomes</a></td></tr>
+<tr class="memdesc:a863ed8485d76c0a036f7a533148888e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">How many genomes have been inserted into this speciatoin strategy. <br /></td></tr>
+<tr class="separator:a863ed8485d76c0a036f7a533148888e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab991acafcd0032a3b7b54feae384414d"><td class="memItemLeft" align="right" valign="top"><a id="ab991acafcd0032a3b7b54feae384414d"></a>
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+<tr class="memdesc:ab991acafcd0032a3b7b54feae384414d"><td class="mdescLeft">&#160;</td><td class="mdescRight">keep a reference to a minimal genome so we can re-use it across islands and not duplicate innovation numbers. <br /></td></tr>
+<tr class="separator:ab991acafcd0032a3b7b54feae384414d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab49abdc7dbe12df0c445d84258fa3cd5"><td class="memItemLeft" align="right" valign="top"><a id="ab49abdc7dbe12df0c445d84258fa3cd5"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><b>max_genomes</b></td></tr>
+<tr class="separator:ab49abdc7dbe12df0c445d84258fa3cd5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:afdfc19b3f2f3f7f59baf7f86844af1f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a3b5fce274787384916bc8d6c564fde3c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab6026e12cef3b892c672d3ab3297d392"><td class="memItemLeft" align="right" valign="top"><a id="ab6026e12cef3b892c672d3ab3297d392"></a>
+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>global_best_genome</b></td></tr>
+<tr class="separator:ab6026e12cef3b892c672d3ab3297d392"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ae86f8696ddab1b6cc595b6e2ef0371ae"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae86f8696ddab1b6cc595b6e2ef0371ae">&#9670;&nbsp;</a></span>generate_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * NeatSpeciationStrategy::generate_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rng_0_1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;&#160;</td>
+          <td class="paramname"><em>generator</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(int32_t, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>mutate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>crossover</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates a new genome. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">rng_0_1</td><td>is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). </td></tr>
+    <tr><td class="paramname">generator</td><td>is the random number generator </td></tr>
+    <tr><td class="paramname">mutate</td><td>is the a function which performs a mutation on a genome </td></tr>
+    <tr><td class="paramname">crossover</td><td>is the function which performs crossover between two genomes</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>the newly generated genome. </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a76f36f0dd7c47727aef912d48f0fa26b">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99">&#9670;&nbsp;</a></span>get_best_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double NeatSpeciationStrategy::get_best_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the fitness of the best genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best fitness over all islands </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#afa3f2d35da2172a32ed06588ef09d4d0">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="aecf62aeba94c1f8d786215c10ea4774b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aecf62aeba94c1f8d786215c10ea4774b">&#9670;&nbsp;</a></span>get_best_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * NeatSpeciationStrategy::get_best_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the best genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best genome of all islands </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#ad0796098d09c25bfee14d9f264bcba2d">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="af7e48fd1afb5a9c1b422ad251366263e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af7e48fd1afb5a9c1b422ad251366263e">&#9670;&nbsp;</a></span>get_generated_genomes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t NeatSpeciationStrategy::get_generated_genomes </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the number of generated genomes. </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a7699a7050ed5a66693f19e834e9ba082">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="aba55a9f0006af882fd613bd0676555eb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aba55a9f0006af882fd613bd0676555eb">&#9670;&nbsp;</a></span>get_inserted_genomes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t NeatSpeciationStrategy::get_inserted_genomes </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the number of inserted genomes. </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a1f07309130568d8cc79da44c8da6ca69">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="acbd3eaa05db725de60074276cd0bb449"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acbd3eaa05db725de60074276cd0bb449">&#9670;&nbsp;</a></span>get_worst_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double NeatSpeciationStrategy::get_worst_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the fitness of the worst genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst fitness over all islands </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a6bdef578fe33c628a81db35d75eaa473">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a8bc6ad6a0740e2f6072aef3ad14dd3f7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8bc6ad6a0740e2f6072aef3ad14dd3f7">&#9670;&nbsp;</a></span>get_worst_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * NeatSpeciationStrategy::get_worst_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the the worst genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst genome of all islands </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#ae84e9c1e0eaf02886b41b1d9adf488f4">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="aa2b2521a400435cbd1856aadda2051e0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa2b2521a400435cbd1856aadda2051e0">&#9670;&nbsp;</a></span>insert_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t NeatSpeciationStrategy::insert_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td>
+          <td class="paramname"><em>genome</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Inserts a <b>copy</b> of the genome into this speciation strategy. </p>
+<p>The caller of this method will need to free the memory of the genome passed into this method.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">genome</td><td>is the genome to insert. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>a value &lt; 0 if the genome was not inserted, 0 if it was a new best genome or &gt; 0 otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a1fd87178f38052aa934312e49819e509">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="abef17e0293c2e0a64b3b4b3b9b7775d2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abef17e0293c2e0a64b3b4b3b9b7775d2">&#9670;&nbsp;</a></span>print()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void NeatSpeciationStrategy::print </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>indent</em> = <code>&quot;&quot;</code></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Prints out all the island's populations. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">indent</td><td>is how much to indent what is printed out </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="class_speciation_strategy.html#a1d44f4c87ab00182e61f0fb364f274a9">SpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ae407ee52a926c60746041987e60f1ecd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae407ee52a926c60746041987e60f1ecd">&#9670;&nbsp;</a></span>inter_island_crossover_rate</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double NeatSpeciationStrategy::inter_island_crossover_rate</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>How frequently to do inter-island crossovers. </p>
+<p>Note that mutation_rate + intra_island_crossover_rate + inter_island_crossover_rate should equal 1, if not they will be scaled down such that they do. </p>
+
+</div>
+</div>
+<a id="ae212edf21f96938c934ad7f824f5d4d7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae212edf21f96938c934ad7f824f5d4d7">&#9670;&nbsp;</a></span>intra_island_crossover_rate</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double NeatSpeciationStrategy::intra_island_crossover_rate</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>How frequently to do intra-island crossovers. </p>
+<p>Note that mutation_rate + intra_island_crossover_rate + inter_island_crossover_rate should equal 1, if not they will be scaled down such that they do. </p>
+
+</div>
+</div>
+<a id="aacd4a3966b8d8578b3cc1f67c03485b2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aacd4a3966b8d8578b3cc1f67c03485b2">&#9670;&nbsp;</a></span>mutation_rate</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double NeatSpeciationStrategy::mutation_rate</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>How frequently to do mutations. </p>
+<p>Note that mutation_rate + intra_island_crossover_rate + inter_island_crossover_rate should equal 1, if not they will be scaled down such that they do. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="neat__speciation__strategy_8hxx_source.html">neat_speciation_strategy.hxx</a></li>
+<li>rnn/neat_speciation_strategy.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">NormalDistribution Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_normal_distribution.html">NormalDistribution</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generate</b> (defined in <a class="el" href="class_normal_distribution.html">NormalDistribution</a>)</td><td class="entry"><a class="el" href="class_normal_distribution.html">NormalDistribution</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>NormalDistribution</b>() (defined in <a class="el" href="class_normal_distribution.html">NormalDistribution</a>)</td><td class="entry"><a class="el" href="class_normal_distribution.html">NormalDistribution</a></td><td class="entry"></td></tr>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>operator&gt;&gt;</b> (defined in <a class="el" href="class_normal_distribution.html">NormalDistribution</a>)</td><td class="entry"><a class="el" href="class_normal_distribution.html">NormalDistribution</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
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+</table></div><!-- contents -->
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+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
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+ <tbody>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_normal_distribution-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">NormalDistribution Class Reference</div>  </div>
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+<div class="contents">
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+</table><table class="memberdecls">
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+<tr class="separator:ae816f2a96eda8e6de20e204179f6cef3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>common/<a class="el" href="random_8hxx_source.html">random.hxx</a></li>
+<li>common/random.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">ParseTurbines Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_parse_turbines.html">ParseTurbines</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>main</b>(String[] arguments) (defined in <a class="el" href="class_parse_turbines.html">ParseTurbines</a>)</td><td class="entry"><a class="el" href="class_parse_turbines.html">ParseTurbines</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>writeHeaders</b>(BufferedWriter bw, String[] columnNames) (defined in <a class="el" href="class_parse_turbines.html">ParseTurbines</a>)</td><td class="entry"><a class="el" href="class_parse_turbines.html">ParseTurbines</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
+</table></div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: ParseTurbines Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+ </tbody>
+</table>
+</div>
+<!-- end header part -->
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+<script type="text/javascript">
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
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+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
+<a href="#pub-static-attribs">Static Public Attributes</a> &#124;
+<a href="class_parse_turbines-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">ParseTurbines Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><b>TurbineLine</b></td></tr>
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+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>datasets/2020_engie_wind/ParseTurbines.java</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+</body>
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diff --git a/docs/html/class_point-members.html b/docs/html/class_point-members.html
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+<script type="text/javascript" src="menudata.js"></script>
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<div id="MSearchResultsWindow">
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+        name="MSearchResults" id="MSearchResults">
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+</div><!-- top -->
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+  <div class="headertitle">
+<div class="title">Point Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_point.html">Point</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>Point</b>(int _y, int _x) (defined in <a class="el" href="class_point.html">Point</a>)</td><td class="entry"><a class="el" href="class_point.html">Point</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>x</b> (defined in <a class="el" href="class_point.html">Point</a>)</td><td class="entry"><a class="el" href="class_point.html">Point</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>y</b> (defined in <a class="el" href="class_point.html">Point</a>)</td><td class="entry"><a class="el" href="class_point.html">Point</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_point.html b/docs/html/class_point.html
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+++ b/docs/html/class_point.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Point Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="class_point-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Point Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ae5af86d9f01d1707873318989f7c4088"><td class="memItemLeft" align="right" valign="top"><a id="ae5af86d9f01d1707873318989f7c4088"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>Point</b> (int _y, int _x)</td></tr>
+<tr class="separator:ae5af86d9f01d1707873318989f7c4088"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a2e1b5fb2b2a83571f5c0bc0f66a73cf7"><td class="memItemLeft" align="right" valign="top"><a id="a2e1b5fb2b2a83571f5c0bc0f66a73cf7"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>y</b></td></tr>
+<tr class="separator:a2e1b5fb2b2a83571f5c0bc0f66a73cf7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8c779e11e694b20e0946105a9f5de842"><td class="memItemLeft" align="right" valign="top"><a id="a8c779e11e694b20e0946105a9f5de842"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>x</b></td></tr>
+<tr class="separator:a8c779e11e694b20e0946105a9f5de842"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>image_tools/<a class="el" href="mosaic__image__set_8hxx_source.html">mosaic_image_set.hxx</a></li>
+<li>image_tools/mosaic_image_set.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_r_a_n_d_o_m___d_a_g___node-members.html b/docs/html/class_r_a_n_d_o_m___d_a_g___node-members.html
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@@ -0,0 +1,146 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">RANDOM_DAG_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>activation</b>(double value, int act_operator) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>activation_derivative</b>(double value, double input, int act_operator) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_h_prev</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_rw</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_weights</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_zw</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int time, double error) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradient</b>(string gradient_name) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng1_1, double range) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int time, double incoming_output) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>l_Nodes</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_output</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>Nodes</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int time, double delta) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print_gradient</b>(string gradient_name) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RANDOM_DAG_Node</b>(int _innovation_number, int _type, double _depth) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset</b>(int _series_length) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>rw</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>try_update_deltas</b>(int time) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>weights</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>zw</b> (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~RANDOM_DAG_Node</b>() (defined in <a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>)</td><td class="entry"><a class="el" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_r_a_n_d_o_m___d_a_g___node-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">RANDOM_DAG_Node Class Reference</div>  </div>
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+Inheritance diagram for RANDOM_DAG_Node:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_r_a_n_d_o_m___d_a_g___node.png" usemap="#RANDOM_5FDAG_5FNode_map" alt=""/>
+  <map id="RANDOM_5FDAG_5FNode_map" name="RANDOM_5FDAG_5FNode_map">
+<area href="class_r_n_n___node___interface.html" alt="RNN_Node_Interface" shape="rect" coords="0,0,139,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:adec1b9be9f1931ba4cf7aa01741ffed3"><td class="memItemLeft" align="right" valign="top"><a id="adec1b9be9f1931ba4cf7aa01741ffed3"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>RANDOM_DAG_Node</b> (int _innovation_number, int _type, double _depth)</td></tr>
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+  <tr class="even"><td class="entry"><a class="el" href="class_r_n_n.html#aad5f51508b5cb978a6343e3234bb8892">get_analytic_gradient</a>(const vector&lt; double &gt; &amp;test_parameters, const vector&lt; vector&lt; double &gt; &gt; &amp;inputs, const vector&lt; vector&lt; double &gt; &gt; &amp;outputs, double &amp;mse, vector&lt; double &gt; &amp;analytic_gradient, bool using_dropout, bool training, double dropout_probability)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_edge</b>(int i) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_empirical_gradient</b>(const vector&lt; double &gt; &amp;test_parameters, const vector&lt; vector&lt; double &gt; &gt; &amp;inputs, const vector&lt; vector&lt; double &gt; &gt; &amp;outputs, double &amp;mae, vector&lt; double &gt; &amp;empirical_gradient, bool using_dropout, bool training, double dropout_probability) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_mae</b> (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_mse</b> (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_node</b>(int i) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_edges</b>() (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_nodes</b>() (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_weights</b>() (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_predictions</b>(const vector&lt; vector&lt; double &gt; &gt; &amp;series_data, const vector&lt; vector&lt; double &gt; &gt; &amp;expected_outputs, bool usng_dropout, double dropout_probability) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_randomly</b>() (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_nodes</b> (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>nodes</b> (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_nodes</b> (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>prediction_mae</b>(const vector&lt; vector&lt; double &gt; &gt; &amp;series_data, const vector&lt; vector&lt; double &gt; &gt; &amp;expected_outputs, bool using_dropout, bool training, double dropout_probability) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>prediction_mse</b>(const vector&lt; vector&lt; double &gt; &gt; &amp;series_data, const vector&lt; vector&lt; double &gt; &gt; &amp;expected_outputs, bool using_dropout, bool training, double dropout_probability) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n.html#a7245cfe333987f29d59dd1c1442391ec">prediction_softmax</a>(const vector&lt; vector&lt; double &gt; &gt; &amp;series_data, const vector&lt; vector&lt; double &gt; &gt; &amp;expected_outputs, bool using_dropout, bool training, double dropout_probability)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>recurrent_edges</b> (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN</b>(vector&lt; RNN_Node_Interface * &gt; &amp;_nodes, vector&lt; RNN_Edge * &gt; &amp;_edges, const vector&lt; string &gt; &amp;input_parameter_names, const vector&lt; string &gt; &amp;output_parameter_names) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN</b>(vector&lt; RNN_Node_Interface * &gt; &amp;_nodes, vector&lt; RNN_Edge * &gt; &amp;_edges, vector&lt; RNN_Recurrent_Edge * &gt; &amp;_recurrent_edges, const vector&lt; string &gt; &amp;input_parameter_names, const vector&lt; string &gt; &amp;output_parameter_names) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n.html#ad70d91c21e6cd8890467d3f64eac0b9a">series_length</a></td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n.html#a17b9ce91b0ad9f0848f296021e5acd5f">use_regression</a></td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>validate_parameters</b>(const vector&lt; string &gt; &amp;input_parameter_names, const vector&lt; string &gt; &amp;output_parameter_names) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_predictions</b>(string output_filename, const vector&lt; string &gt; &amp;input_parameter_names, const vector&lt; string &gt; &amp;output_parameter_names, const vector&lt; vector&lt; double &gt; &gt; &amp;series_data, const vector&lt; vector&lt; double &gt; &gt; &amp;expected_outputs, TimeSeriesSets *time_series_sets, bool using_dropout, double dropout_probability) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_predictions</b>(string output_filename, const vector&lt; string &gt; &amp;input_parameter_names, const vector&lt; string &gt; &amp;output_parameter_names, const vector&lt; vector&lt; double &gt; &gt; &amp;series_data, const vector&lt; vector&lt; double &gt; &gt; &amp;expected_outputs, Corpus *word_series_sets, bool using_dropout, double dropout_probability) (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~RNN</b>() (defined in <a class="el" href="class_r_n_n.html">RNN</a>)</td><td class="entry"><a class="el" href="class_r_n_n.html">RNN</a></td><td class="entry"></td></tr>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: RNN Class Reference</title>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_r_n_n-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">RNN Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a21abeabbb35cbd741947ad14dd2b34ee"><td class="memItemLeft" align="right" valign="top"><a id="a21abeabbb35cbd741947ad14dd2b34ee"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>RNN</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> * &gt; &amp;_nodes, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a> * &gt; &amp;_edges, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;input_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;output_parameter_names)</td></tr>
+<tr class="separator:a21abeabbb35cbd741947ad14dd2b34ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a64568874f663d44ee0fef78b439e36b1"><td class="memItemLeft" align="right" valign="top"><a id="a64568874f663d44ee0fef78b439e36b1"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>RNN</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> * &gt; &amp;_nodes, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a> * &gt; &amp;_edges, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> * &gt; &amp;_recurrent_edges, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;input_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;output_parameter_names)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>fix_parameter_orders</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;input_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;output_parameter_names)</td></tr>
+<tr class="separator:a800ff6a57eda063798e081d56dad4659"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>validate_parameters</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;input_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;output_parameter_names)</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_nodes</b> ()</td></tr>
+<tr class="separator:a6b6ed3e806e12ab441a05983ede06338"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a88e40fc2dee042a8812aefce69c0c6b7"><td class="memItemLeft" align="right" valign="top"><a id="a88e40fc2dee042a8812aefce69c0c6b7"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_edges</b> ()</td></tr>
+<tr class="separator:a88e40fc2dee042a8812aefce69c0c6b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afd9b76cd6e8b6b7412fd7604e414a8e2"><td class="memItemLeft" align="right" valign="top"><a id="afd9b76cd6e8b6b7412fd7604e414a8e2"></a>
+<a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>get_node</b> (int i)</td></tr>
+<tr class="separator:afd9b76cd6e8b6b7412fd7604e414a8e2"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<a class="el" href="class_r_n_n___edge.html">RNN_Edge</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>get_edge</b> (int i)</td></tr>
+<tr class="separator:a6c481f94d0d061a102a0d4d6586452ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>forward_pass</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;series_data, bool using_dropout, bool training, double dropout_probability)</td></tr>
+<tr class="separator:a09548131fe6647737628f8803f7555b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>backward_pass</b> (double error, bool using_dropout, bool training, double dropout_probability)</td></tr>
+<tr class="separator:a36a017fe90949a25e8368a03482712b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:aa5fb8d612f560a05bfa188453578c1a2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the sum of cross entropy error by comparing the expected outputs and the predicted outputs.  <a href="class_r_n_n.html#aa5fb8d612f560a05bfa188453578c1a2">More...</a><br /></td></tr>
+<tr class="separator:aa5fb8d612f560a05bfa188453578c1a2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a99cb157b0238b827561808c92719b24f"><td class="memItemLeft" align="right" valign="top"><a id="a99cb157b0238b827561808c92719b24f"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>calculate_error_mse</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected_outputs)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>calculate_error_mae</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected_outputs)</td></tr>
+<tr class="separator:a4b33d44e30062abd3caf1582aeadadd6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7245cfe333987f29d59dd1c1442391ec"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_r_n_n.html#a7245cfe333987f29d59dd1c1442391ec">prediction_softmax</a> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;series_data, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected_outputs, bool using_dropout, bool training, double dropout_probability)</td></tr>
+<tr class="memdesc:a7245cfe333987f29d59dd1c1442391ec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calls the calculate_error_softmax after the forward pass across the rnn genome.  <a href="class_r_n_n.html#a7245cfe333987f29d59dd1c1442391ec">More...</a><br /></td></tr>
+<tr class="separator:a7245cfe333987f29d59dd1c1442391ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a70c2fd7634e15fcceba72dcc350f3cd9"><td class="memItemLeft" align="right" valign="top"><a id="a70c2fd7634e15fcceba72dcc350f3cd9"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>prediction_mse</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;series_data, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected_outputs, bool using_dropout, bool training, double dropout_probability)</td></tr>
+<tr class="separator:a70c2fd7634e15fcceba72dcc350f3cd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abc61ce5eb7ccb4b027aab28f01dfb578"><td class="memItemLeft" align="right" valign="top"><a id="abc61ce5eb7ccb4b027aab28f01dfb578"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>prediction_mae</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;series_data, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected_outputs, bool using_dropout, bool training, double dropout_probability)</td></tr>
+<tr class="separator:abc61ce5eb7ccb4b027aab28f01dfb578"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5ccda82155037f616c6db9bb73c52b3b"><td class="memItemLeft" align="right" valign="top"><a id="a5ccda82155037f616c6db9bb73c52b3b"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_predictions</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;series_data, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected_outputs, bool usng_dropout, double dropout_probability)</td></tr>
+<tr class="separator:a5ccda82155037f616c6db9bb73c52b3b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6b951718d90f8a3398a500816aa0b25a"><td class="memItemLeft" align="right" valign="top"><a id="a6b951718d90f8a3398a500816aa0b25a"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>write_predictions</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> output_filename, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;input_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;output_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;series_data, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected_outputs, <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a> *time_series_sets, bool using_dropout, double dropout_probability)</td></tr>
+<tr class="separator:a6b951718d90f8a3398a500816aa0b25a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a45ff518bedc99a07d557b9bdaacd3bcc"><td class="memItemLeft" align="right" valign="top"><a id="a45ff518bedc99a07d557b9bdaacd3bcc"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>write_predictions</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> output_filename, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;input_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;output_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;series_data, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected_outputs, <a class="el" href="class_corpus.html">Corpus</a> *word_series_sets, bool using_dropout, double dropout_probability)</td></tr>
+<tr class="separator:a45ff518bedc99a07d557b9bdaacd3bcc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a32e059e267405b96be71b7476d96e3d4"><td class="memItemLeft" align="right" valign="top"><a id="a32e059e267405b96be71b7476d96e3d4"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_randomly</b> ()</td></tr>
+<tr class="separator:a32e059e267405b96be71b7476d96e3d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a69e4bba4cb37eae14acbb56027c3ac69"><td class="memItemLeft" align="right" valign="top"><a id="a69e4bba4cb37eae14acbb56027c3ac69"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>get_weights</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;parameters)</td></tr>
+<tr class="separator:a69e4bba4cb37eae14acbb56027c3ac69"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5ab51c54eafb4349472563cd75c8da6e"><td class="memItemLeft" align="right" valign="top"><a id="a5ab51c54eafb4349472563cd75c8da6e"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>set_weights</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;parameters)</td></tr>
+<tr class="separator:a5ab51c54eafb4349472563cd75c8da6e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a31b31a223ac1d528361e537765942784"><td class="memItemLeft" align="right" valign="top"><a id="a31b31a223ac1d528361e537765942784"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>enable_use_regression</b> (bool _use_regression)</td></tr>
+<tr class="separator:a31b31a223ac1d528361e537765942784"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5078184d1b06414742a10cdf413283c2"><td class="memItemLeft" align="right" valign="top"><a id="a5078184d1b06414742a10cdf413283c2"></a>
+uint32_t&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_weights</b> ()</td></tr>
+<tr class="separator:a5078184d1b06414742a10cdf413283c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aad5f51508b5cb978a6343e3234bb8892"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_r_n_n.html#aad5f51508b5cb978a6343e3234bb8892">get_analytic_gradient</a> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;test_parameters, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;inputs, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;outputs, double &amp;mse, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;analytic_gradient, bool using_dropout, bool training, double dropout_probability)</td></tr>
+<tr class="memdesc:aad5f51508b5cb978a6343e3234bb8892"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the analytic gradients after the forward pass across the rnn genome and the backward pass sequentially.  <a href="class_r_n_n.html#aad5f51508b5cb978a6343e3234bb8892">More...</a><br /></td></tr>
+<tr class="separator:aad5f51508b5cb978a6343e3234bb8892"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7a81b82f7e69907f7d5f2ce37048db68"><td class="memItemLeft" align="right" valign="top"><a id="a7a81b82f7e69907f7d5f2ce37048db68"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>get_empirical_gradient</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;test_parameters, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;inputs, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;outputs, double &amp;mae, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;empirical_gradient, bool using_dropout, bool training, double dropout_probability)</td></tr>
+<tr class="separator:a7a81b82f7e69907f7d5f2ce37048db68"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:ad70d91c21e6cd8890467d3f64eac0b9a"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_r_n_n.html#ad70d91c21e6cd8890467d3f64eac0b9a">series_length</a></td></tr>
+<tr class="memdesc:ad70d91c21e6cd8890467d3f64eac0b9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the length of the dataset.  <a href="class_r_n_n.html#ad70d91c21e6cd8890467d3f64eac0b9a">More...</a><br /></td></tr>
+<tr class="separator:ad70d91c21e6cd8890467d3f64eac0b9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a17b9ce91b0ad9f0848f296021e5acd5f"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_r_n_n.html#a17b9ce91b0ad9f0848f296021e5acd5f">use_regression</a></td></tr>
+<tr class="memdesc:a17b9ce91b0ad9f0848f296021e5acd5f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies whether to use the regression or not.  <a href="class_r_n_n.html#a17b9ce91b0ad9f0848f296021e5acd5f">More...</a><br /></td></tr>
+<tr class="separator:a17b9ce91b0ad9f0848f296021e5acd5f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1737ef6591c418cd8accf3c55c1909c1"><td class="memItemLeft" align="right" valign="top"><a id="a1737ef6591c418cd8accf3c55c1909c1"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>input_nodes</b></td></tr>
+<tr class="separator:a1737ef6591c418cd8accf3c55c1909c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a40e160514ff6c67b7c13d9ac98cd4027"><td class="memItemLeft" align="right" valign="top"><a id="a40e160514ff6c67b7c13d9ac98cd4027"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>output_nodes</b></td></tr>
+<tr class="separator:a40e160514ff6c67b7c13d9ac98cd4027"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afe1275047d2603912692c9ee4ce371b5"><td class="memItemLeft" align="right" valign="top"><a id="afe1275047d2603912692c9ee4ce371b5"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>nodes</b></td></tr>
+<tr class="separator:afe1275047d2603912692c9ee4ce371b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6db496ced949fb7a2374b436d516cfa9"><td class="memItemLeft" align="right" valign="top"><a id="a6db496ced949fb7a2374b436d516cfa9"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>edges</b></td></tr>
+<tr class="separator:a6db496ced949fb7a2374b436d516cfa9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8538540654aacffe64fda78d83f14c69"><td class="memItemLeft" align="right" valign="top"><a id="a8538540654aacffe64fda78d83f14c69"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>recurrent_edges</b></td></tr>
+<tr class="separator:a8538540654aacffe64fda78d83f14c69"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a3c6fd1b1841f1808870f8f228c5d021e"><td class="memItemLeft" align="right" valign="top"><a id="a3c6fd1b1841f1808870f8f228c5d021e"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>get_mse</b> (<a class="el" href="class_r_n_n.html">RNN</a> *genome, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected, double &amp;mse, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;deltas)</td></tr>
+<tr class="separator:a3c6fd1b1841f1808870f8f228c5d021e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a744ea213e57442af35ac90ea397ce97c"><td class="memItemLeft" align="right" valign="top"><a id="a744ea213e57442af35ac90ea397ce97c"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>get_mae</b> (<a class="el" href="class_r_n_n.html">RNN</a> *genome, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected, double &amp;mae, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;deltas)</td></tr>
+<tr class="separator:a744ea213e57442af35ac90ea397ce97c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="aa5fb8d612f560a05bfa188453578c1a2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa5fb8d612f560a05bfa188453578c1a2">&#9670;&nbsp;</a></span>calculate_error_softmax()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double RNN::calculate_error_softmax </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>expected_outputs</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Calculates the sum of cross entropy error by comparing the expected outputs and the predicted outputs. </p>
+<p><br  />
+</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">expected_outputs</td><td>is the expected outputs according the dataset.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>sum of the cross entropy error. </dd></dl>
+
+</div>
+</div>
+<a id="aad5f51508b5cb978a6343e3234bb8892"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aad5f51508b5cb978a6343e3234bb8892">&#9670;&nbsp;</a></span>get_analytic_gradient()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void RNN::get_analytic_gradient </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>test_parameters</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>inputs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>outputs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double &amp;&#160;</td>
+          <td class="paramname"><em>mse</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>analytic_gradient</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>using_dropout</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>training</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>dropout_probability</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Updates the analytic gradients after the forward pass across the rnn genome and the backward pass sequentially. </p>
+<p><br  />
+</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">test_parameters</td><td>is the dataset parameters used for the forward pass. </td></tr>
+    <tr><td class="paramname">inputs</td><td>are the inputs according to the dataset that is pass to the for forward pass. </td></tr>
+    <tr><td class="paramname">outputs</td><td>are the expected outputs according to the dataset that is pass to the calculate error for backward pass. </td></tr>
+    <tr><td class="paramname">analytic_gradients</td><td>are the current gradients in the rnn genome that are going to be update after a single pass across the rnn genome. </td></tr>
+    <tr><td class="paramname">using_dropout</td><td>is the probability for the node being disabled while forward pass training and not during testing. <br  />
+ </td></tr>
+    <tr><td class="paramname">training</td><td>is to specify whether it is training stage or not to use dropout. </td></tr>
+    <tr><td class="paramname">dropout_probability</td><td>is the probability by which the the nodes will be disabled. will not work during testing stage and without use_droput = true.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>sum of the cross entropy error over the dataset. </dd></dl>
+
+</div>
+</div>
+<a id="a7245cfe333987f29d59dd1c1442391ec"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7245cfe333987f29d59dd1c1442391ec">&#9670;&nbsp;</a></span>prediction_softmax()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double RNN::prediction_softmax </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>series_data</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>expected_outputs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>using_dropout</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>training</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>dropout_probability</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Calls the calculate_error_softmax after the forward pass across the rnn genome. </p>
+<p><br  />
+</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">series_data</td><td>is the dataset used for the forward pass. </td></tr>
+    <tr><td class="paramname">expected_outputs</td><td>is the expected outputs according to the dataset. </td></tr>
+    <tr><td class="paramname">using_dropout</td><td>is the probability for the node being disabled while forward pass training and not during testing. <br  />
+ </td></tr>
+    <tr><td class="paramname">training</td><td>is to specify whether it is training stage or not to use dropout. </td></tr>
+    <tr><td class="paramname">dropout_probability</td><td>is the probability by which the the nodes will be disabled. will not work during testing stage and without use_droput = true.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>sum of the cross entropy error over the dataset. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ad70d91c21e6cd8890467d3f64eac0b9a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad70d91c21e6cd8890467d3f64eac0b9a">&#9670;&nbsp;</a></span>series_length</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int RNN::series_length</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies the length of the dataset. </p>
+<p><br  />
+ It can be the number of the files in case of time series or number of batches in case of word series </p>
+
+</div>
+</div>
+<a id="a17b9ce91b0ad9f0848f296021e5acd5f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a17b9ce91b0ad9f0848f296021e5acd5f">&#9670;&nbsp;</a></span>use_regression</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool RNN::use_regression</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies whether to use the regression or not. </p>
+<p><br  />
+ It will use regression in case of time series and will not use regression in case of word series </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="rnn_8hxx_source.html">rnn.hxx</a></li>
+<li>rnn/rnn.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta name="generator" content="Doxygen 1.8.17"/>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
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+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
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+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">RNN_Edge Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>(const vector&lt; RNN_Node_Interface * &gt; new_nodes) (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_weight</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>deltas</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>dropped_out</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>equals</b>(RNN_Edge *other) const (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>EXAMM</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradient</b>() const (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_input_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_input_node</b>() const (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_output_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_output_node</b>() const (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_innovation_number</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_node</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_innovation_number</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_node</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>outputs</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>propagate_backward</b>(int32_t time) (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>propagate_backward</b>(int32_t time, bool training, double dropout_probability) (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>propagate_forward</b>(int32_t time) (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>propagate_forward</b>(int32_t time, bool training, double dropout_probability) (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int32_t series_length) (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Edge</b>(int32_t _innovation_number, RNN_Node_Interface *_input_node, RNN_Node_Interface *_output_node) (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Edge</b>(int32_t _innovation_number, int32_t _input_innovation_number, int32_t _output_innovation_number, const vector&lt; RNN_Node_Interface * &gt; &amp;nodes) (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Genome</b> (defined in <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___edge.html">RNN_Edge</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
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+class&#160;</td><td class="memItemRight" valign="bottom"><b>EXAMM</b></td></tr>
+<tr class="separator:a7850c8d4e61c10934acf1a9a98347cf3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="rnn__edge_8hxx_source.html">rnn_edge.hxx</a></li>
+<li>rnn/rnn_edge.cxx</li>
+</ul>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+</html>
diff --git a/docs/html/class_r_n_n___genome-members.html b/docs/html/class_r_n_n___genome-members.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+<meta name="generator" content="Doxygen 1.8.17"/>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
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+</table>
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+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
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+<!-- iframe showing the search results (closed by default) -->
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+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
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+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">RNN_Genome Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>adapt_learning_rate</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>add_edge</b>(double mu, double sigma, int32_t &amp;edge_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_node</b>(double mu, double sigma, int node_type, uniform_int_distribution&lt; int32_t &gt; dist, int32_t &amp;edge_innovation_count, int32_t &amp;node_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>add_recurrent_edge</b>(double mu, double sigma, uniform_int_distribution&lt; int32_t &gt; rec_depth_dist, int32_t &amp;edge_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>assign_reachability</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>attempt_edge_insert</b>(RNN_Node_Interface *n1, RNN_Node_Interface *n2, double mu, double sigma, int32_t &amp;edge_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>attempt_recurrent_edge_insert</b>(RNN_Node_Interface *n1, RNN_Node_Interface *n2, double mu, double sigma, uniform_int_distribution&lt; int32_t &gt; dist, int32_t &amp;edge_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>backpropagate</b>(const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;validation_inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;validation_outputs) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backpropagate_stochastic</b>(const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;validation_inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;validation_outputs) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>best_parameters</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>best_validation_mae</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n___genome.html#a41ba624f5a9311ee8ef0803ae6063156">best_validation_mse</a></td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>bp_iterations</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>clear_generated_by</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>connect_new_input_node</b>(double mu, double sig, RNN_Node_Interface *new_node, uniform_int_distribution&lt; int32_t &gt; dist, int32_t &amp;edge_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>connect_new_output_node</b>(double mu, double sig, RNN_Node_Interface *new_node, uniform_int_distribution&lt; int32_t &gt; dist, int32_t &amp;edge_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>connect_node_to_hid_nodes</b>(double mu, double sig, RNN_Node_Interface *new_node, uniform_int_distribution&lt; int32_t &gt; dist, int32_t &amp;edge_innovation_count, bool from_input) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>create_node</b>(double mu, double sigma, int node_type, int32_t &amp;node_innovation_count, double depth) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>disable_dropout</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>disable_edge</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>disable_high_threshold</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>disable_low_threshold</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>disable_node</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>dropout_probability</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>edges</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enable_dropout</b>(double _dropout_probability) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enable_edge</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enable_high_threshold</b>(double _high_threshold) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enable_low_threshold</b>(double _low_threshold) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enable_node</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enable_use_regression</b>(bool _use_regression) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>equals</b>(RNN_Genome *other) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>EXAMM</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generate_recurrent_edges</b>(RNN_Node_Interface *node, double mu, double sigma, uniform_int_distribution&lt; int32_t &gt; dist, int32_t &amp;edge_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generated_by_map</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generated_by_string</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generation_id</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generator</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_analytic_gradient</b>(vector&lt; RNN * &gt; &amp;rnns, const vector&lt; double &gt; &amp;parameters, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs, double &amp;mse, vector&lt; double &gt; &amp;analytic_gradient, bool training) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_avg_edge_weight</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_avg_recurrent_depth</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_best_parameters</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_best_validation_mae</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_best_validation_mse</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_best_validation_softmax</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_bp_iterations</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_color</b>(double weight, bool is_recurrent) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_edge_count_str</b>(bool recurrent) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_enabled_edge_count</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_enabled_node_count</b>(int node_type) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_enabled_node_count</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_enabled_recurrent_edge_count</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_fan_in</b>(int32_t node_innovation) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_fan_out</b>(int32_t node_innovation) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n___genome.html#a38239d73966179c24fc12254810b31ad">get_fitness</a>() const</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_generated_by</b>(string type) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_generated_by_map</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_generation_id</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_group_id</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_innovation_list</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_input_edges</b>(int32_t node_innovation, vector&lt; RNN_Edge * &gt; &amp;input_edges, vector&lt; RNN_Recurrent_Edge * &gt; &amp;input_recurrent_edges) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_input_parameter_names</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_kaiming_weight</b>(RNN_Node_Interface *output_node) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_mae</b>(const vector&lt; double &gt; &amp;parameters, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n___genome.html#aaffc30ae458b6dcf16a0e7484ca7bcfc">get_max_edge_innovation_count</a>()</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_r_n_n___genome.html#ae504f790ddce6366e49a4892b86e12cb">get_max_node_innovation_count</a>()</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_mse</b>(const vector&lt; double &gt; &amp;parameters, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_mu_sigma</b>(const vector&lt; double &gt; &amp;p, double &amp;mu, double &amp;sigma) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_node_count</b>(int node_type) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_node_count</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_node_count_str</b>(int node_type) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_normalize_avgs</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_normalize_maxs</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_normalize_mins</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_normalize_std_devs</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_normalize_type</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_inputs</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_outputs</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_weights</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_output_parameter_names</b>() const (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_predictions</b>(const vector&lt; double &gt; &amp;parameters, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_random_weight</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_rnn</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_r_n_n___genome.html#a8f267b82d174d4a10bd48049e025a99b">get_softmax</a>(const vector&lt; double &gt; &amp;parameters, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n___genome.html#a280b5a80c457fd341fe82ec9cc930d01">get_structural_hash</a>() const</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_xavier_weight</b>(RNN_Node_Interface *output_node) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>group_id</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n___genome.html#a8d67b0d3f328bfc4a8dd459a61fb1cf3">has_node_with_innovation</a>(int32_t innovation_number) const</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>high_threshold</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initial_parameters</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_kaiming</b>(RNN_Node_Interface *n) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_node_randomly</b>(RNN_Node_Interface *n) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_randomly</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_xavier</b>(RNN_Node_Interface *n) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_parameter_names</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>IslandSpeciationStrategy</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>learning_rate</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>log_filename</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>low_threshold</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>merge_node</b>(double mu, double sigma, int node_type, uniform_int_distribution&lt; int32_t &gt; dist, int32_t &amp;edge_innovation_count, int32_t &amp;node_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>mutated_component_weight</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>NeatSpeciationStrategy</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>nodes</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normal_distribution</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_avgs</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_maxs</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_mins</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_std_devs</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_type</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_parameter_names</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>outputs_unreachable</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_statistics</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print_statistics_header</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>read_from_array</b>(char *array, int32_t length) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>read_from_stream</b>(istream &amp;bin_istream) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RecDepthFrequencyTable</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>recurrent_edges</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>rng</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>rng_0_1</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>rng_1_1</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Genome</b>(vector&lt; RNN_Node_Interface * &gt; &amp;_nodes, vector&lt; RNN_Edge * &gt; &amp;_edges, vector&lt; RNN_Recurrent_Edge * &gt; &amp;_recurrent_edges, WeightType _weight_initialize, WeightType _weight_inheritance, WeightType _mutated_component_weight) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Genome</b>(vector&lt; RNN_Node_Interface * &gt; &amp;_nodes, vector&lt; RNN_Edge * &gt; &amp;_edges, vector&lt; RNN_Recurrent_Edge * &gt; &amp;_recurrent_edges, uint16_t seed, WeightType _weight_initialize, WeightType _weight_inheritance, WeightType _mutated_component_weight) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Genome</b>(string binary_filename) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Genome</b>(char *array, int32_t length) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Genome</b>(istream &amp;bin_infile) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>sanity_check</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_adapt_learning_rate</b>(bool _adapt_learning_rate) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_best_parameters</b>(vector&lt; double &gt; parameters) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_bp_iterations</b>(int32_t _bp_iterations) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_generated_by</b>(string type) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_generation_id</b>(int32_t generation_id) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_group_id</b>(int32_t _group_id) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_initial_parameters</b>(vector&lt; double &gt; parameters) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_learning_rate</b>(double _learning_rate) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_log_filename</b>(string _log_filename) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_nesterov_momentum</b>(bool _use_nesterov_momentum) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_normalize_bounds</b>(string _normalize_type, const map&lt; string, double &gt; &amp;_normalize_mins, const map&lt; string, double &gt; &amp;_normalize_maxs, const map&lt; string, double &gt; &amp;_normalize_avgs, const map&lt; string, double &gt; &amp;_normalize_std_devs) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_parameter_names</b>(const vector&lt; string &gt; &amp;_input_parameter_names, const vector&lt; string &gt; &amp;_output_parameter_names) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_reset_weights</b>(bool _use_reset_weights) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sort_edges_by_depth</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>sort_nodes_by_depth</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sort_recurrent_edges_by_depth</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>split_edge</b>(double mu, double sigma, int node_type, uniform_int_distribution&lt; int32_t &gt; rec_depth_dist, int32_t &amp;edge_innovation_count, int32_t &amp;node_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>split_node</b>(double mu, double sigma, int node_type, uniform_int_distribution&lt; int32_t &gt; dist, int32_t &amp;edge_innovation_count, int32_t &amp;node_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>structural_hash</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>transfer_to</b>(const vector&lt; string &gt; &amp;new_input_parameter_names, const vector&lt; string &gt; &amp;new_output_parameter_names, string transfer_learning_version, bool epigenetic_weights, int32_t min_recurrent_depth, int32_t max_recurrent_depth) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>update_generation_map</b>(map&lt; string, int32_t &gt; &amp;generation_map) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>update_innovation_counts</b>(int32_t &amp;node_innovation_count, int32_t &amp;edge_innovation_count) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>use_dropout</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>use_high_norm</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>use_low_norm</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>use_nesterov_momentum</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n___genome.html#a32113888aee78f2b95490a5289f47a44">use_regression</a></td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>use_reset_weights</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>weight_inheritance</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>weight_initialize</b> (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_graphviz</b>(string filename) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_predictions</b>(string output_directory, const vector&lt; string &gt; &amp;input_filenames, const vector&lt; double &gt; &amp;parameters, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs, TimeSeriesSets *time_series_sets) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_r_n_n___genome.html#a99769540d03c292a1e63bd753ae58ceb">write_predictions</a>(string output_directory, const vector&lt; string &gt; &amp;input_filenames, const vector&lt; double &gt; &amp;parameters, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, const vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs, Corpus *word_series_sets)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_to_array</b>(char **array, int32_t &amp;length) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_to_file</b>(string bin_filename) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_to_stream</b>(ostream &amp;bin_stream) (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~RNN_Genome</b>() (defined in <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>)</td><td class="entry"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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@@ -0,0 +1,865 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: RNN_Genome Class Reference</title>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_r_n_n___genome-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">RNN_Genome Class Reference</div>  </div>
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+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>sort_nodes_by_depth</b> ()</td></tr>
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+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>copy</b> ()</td></tr>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>sanity_check</b> ()</td></tr>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>outputs_unreachable</b> ()</td></tr>
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+<tr class="separator:a8d67b0d3f328bfc4a8dd459a61fb1cf3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___edge.html">RNN_Edge</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>edges</b></td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a7850c8d4e61c10934acf1a9a98347cf3"><td class="memItemLeft" align="right" valign="top"><a id="a7850c8d4e61c10934acf1a9a98347cf3"></a>
+class&#160;</td><td class="memItemRight" valign="bottom"><b>EXAMM</b></td></tr>
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+class&#160;</td><td class="memItemRight" valign="bottom"><b>IslandSpeciationStrategy</b></td></tr>
+<tr class="separator:aec7752aa97db7b461eca0d28865aff20"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afde0239d25f6ec4aac551d7b6eaf5bc3"><td class="memItemLeft" align="right" valign="top"><a id="afde0239d25f6ec4aac551d7b6eaf5bc3"></a>
+class&#160;</td><td class="memItemRight" valign="bottom"><b>NeatSpeciationStrategy</b></td></tr>
+<tr class="separator:afde0239d25f6ec4aac551d7b6eaf5bc3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+class&#160;</td><td class="memItemRight" valign="bottom"><b>RecDepthFrequencyTable</b></td></tr>
+<tr class="separator:aa1d85c88a38f21ffb0ccedd474289b0e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a38239d73966179c24fc12254810b31ad"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a38239d73966179c24fc12254810b31ad">&#9670;&nbsp;</a></span>get_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double RNN_Genome::get_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Calculates the fitness of the rnn genome across the dataset. </p>
+<p><br  />
+ This will be the mean squared error in case of regression and cross entropy loss in case of classification.</p>
+<dl class="section return"><dt>Returns</dt><dd>MSE or SOFTMAX ERROR. </dd></dl>
+
+</div>
+</div>
+<a id="aaffc30ae458b6dcf16a0e7484ca7bcfc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaffc30ae458b6dcf16a0e7484ca7bcfc">&#9670;&nbsp;</a></span>get_max_edge_innovation_count()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int RNN_Genome::get_max_edge_innovation_count </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the max innovation number of any edge or recurrent edge in the genome. </dd></dl>
+
+</div>
+</div>
+<a id="ae504f790ddce6366e49a4892b86e12cb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae504f790ddce6366e49a4892b86e12cb">&#9670;&nbsp;</a></span>get_max_node_innovation_count()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int RNN_Genome::get_max_node_innovation_count </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the max innovation number of any node in the genome. </dd></dl>
+
+</div>
+</div>
+<a id="a8f267b82d174d4a10bd48049e025a99b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8f267b82d174d4a10bd48049e025a99b">&#9670;&nbsp;</a></span>get_softmax()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double RNN_Genome::get_softmax </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>parameters</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>inputs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>outputs</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Predicts the softmax error after a single pass across the rnn genome. </p>
+<p><br  />
+</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">parameters</td><td>is the parameters such as dropout, momentum type used for the forward pass. </td></tr>
+    <tr><td class="paramname">inputs</td><td>are the inputs according to the dataset that is pass to the for forward pass. </td></tr>
+    <tr><td class="paramname">outputs</td><td>are the expected outputs according to the dataset that is pass to the calculate error for backward pass.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>average of the cross entropy error over the dataset. </dd></dl>
+
+</div>
+</div>
+<a id="a280b5a80c457fd341fe82ec9cc930d01"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a280b5a80c457fd341fe82ec9cc930d01">&#9670;&nbsp;</a></span>get_structural_hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> RNN_Genome::get_structural_hash </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the structural hash (calculated when assign_reachaability is called) </dd></dl>
+
+</div>
+</div>
+<a id="a8d67b0d3f328bfc4a8dd459a61fb1cf3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8d67b0d3f328bfc4a8dd459a61fb1cf3">&#9670;&nbsp;</a></span>has_node_with_innovation()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool RNN_Genome::has_node_with_innovation </td>
+          <td>(</td>
+          <td class="paramtype">int32_t&#160;</td>
+          <td class="paramname"><em>innovation_number</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Determines if the genome contains a node with the given innovation number. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">the</td><td>innovation number to fine</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the genome has a node with the provided innovation number, false otherwise. </dd></dl>
+
+</div>
+</div>
+<a id="a99769540d03c292a1e63bd753ae58ceb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a99769540d03c292a1e63bd753ae58ceb">&#9670;&nbsp;</a></span>write_predictions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void RNN_Genome::write_predictions </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>output_directory</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>input_filenames</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>parameters</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>inputs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>outputs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="class_corpus.html">Corpus</a> *&#160;</td>
+          <td class="paramname"><em>word_series_sets</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Predicts the cross entropy loss after a single pass across the rnn genome. </p>
+<p><br  />
+</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">output_directory</td><td>is the file directory that contains all the output files. </td></tr>
+    <tr><td class="paramname">inputs_filenames</td><td>are the inputs files according to the dataset that is pass to the for forward pass. </td></tr>
+    <tr><td class="paramname">inputs</td><td>are the inputs according to the dataset that is pass to the for forward pass. <br  />
+ </td></tr>
+    <tr><td class="paramname">outputs</td><td>are the expected outputs according to the dataset that is pass to the calculate error for backward pass. </td></tr>
+    <tr><td class="paramname">parameters</td><td>is the parameters such as dropout, momentum type used for the forward pass. </td></tr>
+    <tr><td class="paramname">word_series_sets</td><td>is the <a class="el" href="class_corpus.html">Corpus</a> from the word series dataset.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>Calls the write predictions from the rnn class. <br  />
+ </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a41ba624f5a9311ee8ef0803ae6063156"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a41ba624f5a9311ee8ef0803ae6063156">&#9670;&nbsp;</a></span>best_validation_mse</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double RNN_Genome::best_validation_mse</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies the validation error across the dataset. </p>
+<p><br  />
+ It will use mean squared error when regression in case of time series and cross entropy loss when regression not used in case of word series </p>
+
+</div>
+</div>
+<a id="a32113888aee78f2b95490a5289f47a44"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a32113888aee78f2b95490a5289f47a44">&#9670;&nbsp;</a></span>use_regression</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool RNN_Genome::use_regression</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies whether to use the regression or not. </p>
+<p><br  />
+ It will use regression in case of time series and will not use regression in case of word series </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="rnn__genome_8hxx_source.html">rnn_genome.hxx</a></li>
+<li>rnn/rnn_genome.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_r_n_n___node-members.html b/docs/html/class_r_n_n___node-members.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta name="generator" content="Doxygen 1.8.17"/>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
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+var searchBox = new SearchBox("searchBox", "search",false,'Search');
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+</script>
+<script type="text/javascript" src="menudata.js"></script>
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+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">RNN_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_r_n_n___node.html">RNN_Node</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>bias</b> (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_bias</b> (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int time, double error) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng1_1, double range) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired</b>(int time, double incoming_output) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_output</b> (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(int time, double delta) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int _series_length) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node</b>(int _innovation_number, int _layer_type, double _depth, int _node_type) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node</b>(int _innovation_number, int _layer_type, double _depth, int _node_type, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>try_update_deltas</b>(int time) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~RNN_Node</b>() (defined in <a class="el" href="class_r_n_n___node.html">RNN_Node</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node.html">RNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<hr/>The documentation for this class was generated from the following files:<ul>
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+<li>rnn/rnn_node.cxx</li>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() const =0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_mae</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_mse</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_weights</b>() const =0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const =0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const =0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng_1_1, double range)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Genome</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Recurrent_Edge</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+</html>
diff --git a/docs/html/class_r_n_n___node___interface.html b/docs/html/class_r_n_n___node___interface.html
new file mode 100644
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+++ b/docs/html/class_r_n_n___node___interface.html
@@ -0,0 +1,262 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: RNN_Node_Interface Class Reference</title>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pro-attribs">Protected Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_r_n_n___node___interface-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">RNN_Node_Interface Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for RNN_Node_Interface:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_r_n_n___node___interface.png" usemap="#RNN_5FNode_5FInterface_map" alt=""/>
+  <map id="RNN_5FNode_5FInterface_map" name="RNN_5FNode_5FInterface_map">
+<area href="class_delta___node.html" alt="Delta_Node" shape="rect" coords="149,56,288,80"/>
+<area href="class_e_n_a_r_c___node.html" alt="ENARC_Node" shape="rect" coords="149,112,288,136"/>
+<area href="class_e_n_a_s___d_a_g___node.html" alt="ENAS_DAG_Node" shape="rect" coords="149,168,288,192"/>
+<area href="class_g_r_u___node.html" alt="GRU_Node" shape="rect" coords="149,224,288,248"/>
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+<tr class="memitem:a0148cba9d2537a52d5402e246e14209c"><td class="memItemLeft" align="right" valign="top"><a id="a0148cba9d2537a52d5402e246e14209c"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><b>total_outputs</b></td></tr>
+<tr class="separator:a0148cba9d2537a52d5402e246e14209c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a6ed93c885e63e64a8aa0ab2b7f637f0e"><td class="memItemLeft" align="right" valign="top"><a id="a6ed93c885e63e64a8aa0ab2b7f637f0e"></a>
+class&#160;</td><td class="memItemRight" valign="bottom"><b>RNN_Edge</b></td></tr>
+<tr class="separator:a6ed93c885e63e64a8aa0ab2b7f637f0e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4a4558cee1b41082e2c3123452a35b99"><td class="memItemLeft" align="right" valign="top"><a id="a4a4558cee1b41082e2c3123452a35b99"></a>
+class&#160;</td><td class="memItemRight" valign="bottom"><b>RNN_Recurrent_Edge</b></td></tr>
+<tr class="separator:a4a4558cee1b41082e2c3123452a35b99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a67a4ae33f841a6e1d186c84e9490a802"><td class="memItemLeft" align="right" valign="top"><a id="a67a4ae33f841a6e1d186c84e9490a802"></a>
+class&#160;</td><td class="memItemRight" valign="bottom"><b>RNN</b></td></tr>
+<tr class="separator:a67a4ae33f841a6e1d186c84e9490a802"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad7617134ea6662be9dc1ad79223de4d1"><td class="memItemLeft" align="right" valign="top"><a id="ad7617134ea6662be9dc1ad79223de4d1"></a>
+class&#160;</td><td class="memItemRight" valign="bottom"><b>RNN_Genome</b></td></tr>
+<tr class="separator:ad7617134ea6662be9dc1ad79223de4d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3c6fd1b1841f1808870f8f228c5d021e"><td class="memItemLeft" align="right" valign="top"><a id="a3c6fd1b1841f1808870f8f228c5d021e"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>get_mse</b> (<a class="el" href="class_r_n_n.html">RNN</a> *genome, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected, double &amp;mse, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;deltas)</td></tr>
+<tr class="separator:a3c6fd1b1841f1808870f8f228c5d021e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a744ea213e57442af35ac90ea397ce97c"><td class="memItemLeft" align="right" valign="top"><a id="a744ea213e57442af35ac90ea397ce97c"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>get_mae</b> (<a class="el" href="class_r_n_n.html">RNN</a> *genome, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;expected, double &amp;mae, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;deltas)</td></tr>
+<tr class="separator:a744ea213e57442af35ac90ea397ce97c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="rnn__node__interface_8hxx_source.html">rnn_node_interface.hxx</a></li>
+<li>rnn/rnn_node_interface.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_r_n_n___node___interface.png b/docs/html/class_r_n_n___node___interface.png
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new file mode 100644
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+++ b/docs/html/class_r_n_n___recurrent___edge-members.html
@@ -0,0 +1,116 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
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+</table>
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+<!-- Generated by Doxygen 1.8.17 -->
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+     onmouseout="return searchBox.OnSearchSelectHide()"
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+        name="MSearchResults" id="MSearchResults">
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">RNN_Recurrent_Edge Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>(const vector&lt; RNN_Node_Interface * &gt; new_nodes) (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_weight</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>deltas</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>equals</b>(RNN_Recurrent_Edge *other) const (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>EXAMM</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>first_propagate_backward</b>() (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>first_propagate_forward</b>() (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gradient</b>() (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_input_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_input_node</b>() const (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_output_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_output_node</b>() const (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_recurrent_depth</b>() const (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_innovation_number</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_node</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_innovation_number</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_node</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>outputs</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>propagate_backward</b>(int32_t time) (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>propagate_forward</b>(int32_t time) (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RecDepthFrequencyTable</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>recurrent_depth</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int32_t _series_length) (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Genome</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Recurrent_Edge</b>(int32_t _innovation_number, int32_t _recurrent_depth, RNN_Node_Interface *_input_node, RNN_Node_Interface *_output_node) (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Recurrent_Edge</b>(int32_t _innovation_number, int32_t _recurrent_depth, int32_t _input_innovation_number, int32_t _output_innovation_number, const vector&lt; RNN_Node_Interface * &gt; &amp;nodes) (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>weight</b> (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>)</td><td class="entry"><a class="el" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_r_n_n___recurrent___edge.html b/docs/html/class_r_n_n___recurrent___edge.html
new file mode 100644
index 00000000..63a41e50
--- /dev/null
+++ b/docs/html/class_r_n_n___recurrent___edge.html
@@ -0,0 +1,206 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">SentenceSeries Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_sentence_series.html">SentenceSeries</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_word_series</b>(string name) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>export_word_series</b>(vector&lt; vector&lt; double &gt; &gt; &amp;data, int word_offset) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>export_word_series</b>(vector&lt; vector&lt; double &gt; &gt; &amp;data) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_sentence_series.html#a71ecf2220dbde9a683361a418fd79caa">filename</a></td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_average</b>(string word) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_correlation</b>(string word1, string word2, int32_t lag) const (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_filename</b>() const (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_max</b>(string word) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_max_change</b>(string word) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_min</b>(string word) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_min_change</b>(string word) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_columns</b>() const (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_rows</b>() const (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_series</b>(string word_name, vector&lt; double &gt; &amp;series) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_std_dev</b>(string word) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_variance</b>(string word) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_word_index</b>() const (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_avg_std_dev</b>(string word, double avg, double std_dev, double norm_max) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_min_max</b>(string word, double min, double max) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_sentence_series.html#a8051bf7722f693797d589fbb6835afc2">number_rows</a></td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>select_parameters</b>(const vector&lt; string &gt; &amp;input_parameter_names, const vector&lt; string &gt; &amp;output_parameter_names) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>select_parameters</b>(const vector&lt; string &gt; &amp;parameter_names) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>SentenceSeries</b>() (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>SentenceSeries</b>(const string _filename, const vector&lt; string &gt; &amp;_word_index, const map&lt; string, int &gt; &amp;_vocab) (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_sentence_series.html#a12648e58e8101346fb1d0b9008f89084">vocab</a></td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_sentence_series.html#ad0c1da927f87e6778900f1e93faf8a8e">word_index</a></td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_sentence_series.html#a78609974545b5e015f3a5f477d876c4b">word_series</a></td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~SentenceSeries</b>() (defined in <a class="el" href="class_sentence_series.html">SentenceSeries</a>)</td><td class="entry"><a class="el" href="class_sentence_series.html">SentenceSeries</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
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diff --git a/docs/html/class_sentence_series.html b/docs/html/class_sentence_series.html
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: SentenceSeries Class Reference</title>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_sentence_series-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">SentenceSeries Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a9dd5e8b2b6405969ec0b6f1639a0cd49"><td class="memItemLeft" align="right" valign="top"><a id="a9dd5e8b2b6405969ec0b6f1639a0cd49"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>SentenceSeries</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> _filename, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;_word_index, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, int &gt; &amp;_vocab)</td></tr>
+<tr class="separator:a9dd5e8b2b6405969ec0b6f1639a0cd49"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a86183fa3e7691b3f4956e33eb5ed5036"><td class="memItemLeft" align="right" valign="top"><a id="a86183fa3e7691b3f4956e33eb5ed5036"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>add_word_series</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> name)</td></tr>
+<tr class="separator:a86183fa3e7691b3f4956e33eb5ed5036"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a256748d3020dfb23320fec748285bfcd"><td class="memItemLeft" align="right" valign="top"><a id="a256748d3020dfb23320fec748285bfcd"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_rows</b> () const</td></tr>
+<tr class="separator:a256748d3020dfb23320fec748285bfcd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa9d03674846a3ca929bf4c19f6d159a2"><td class="memItemLeft" align="right" valign="top"><a id="aa9d03674846a3ca929bf4c19f6d159a2"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_columns</b> () const</td></tr>
+<tr class="separator:aa9d03674846a3ca929bf4c19f6d159a2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa98fbace558de995c1d09fe9320786a0"><td class="memItemLeft" align="right" valign="top"><a id="aa98fbace558de995c1d09fe9320786a0"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><b>get_filename</b> () const</td></tr>
+<tr class="separator:aa98fbace558de995c1d09fe9320786a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae508f8a74847a39cd05f43933b652380"><td class="memItemLeft" align="right" valign="top"><a id="ae508f8a74847a39cd05f43933b652380"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_word_index</b> () const</td></tr>
+<tr class="separator:ae508f8a74847a39cd05f43933b652380"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a912fbfb10140e366162396c82a260a8c"><td class="memItemLeft" align="right" valign="top"><a id="a912fbfb10140e366162396c82a260a8c"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>get_series</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word_name, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;series)</td></tr>
+<tr class="separator:a912fbfb10140e366162396c82a260a8c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a192d7b7c36b2974d1a757bca19fd7116"><td class="memItemLeft" align="right" valign="top"><a id="a192d7b7c36b2974d1a757bca19fd7116"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_min</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word)</td></tr>
+<tr class="separator:a192d7b7c36b2974d1a757bca19fd7116"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_average</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word)</td></tr>
+<tr class="separator:ada1c70ab14a3af0961fa5f9536bc7a73"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_max</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word)</td></tr>
+<tr class="separator:a15e2b176f35810f7b2732aad331e71df"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_std_dev</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_variance</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_min_change</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_max_change</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word)</td></tr>
+<tr class="separator:a92b13d7397a094e5f377f2fbc4215c19"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_correlation</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word1, <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word2, <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> lag) const</td></tr>
+<tr class="separator:a69379261de439200738732a3af56b2c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab4b3eae0c436701a5350037ac0119c10"><td class="memItemLeft" align="right" valign="top"><a id="ab4b3eae0c436701a5350037ac0119c10"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_min_max</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word, double min, double max)</td></tr>
+<tr class="separator:ab4b3eae0c436701a5350037ac0119c10"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_avg_std_dev</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> word, double avg, double std_dev, double norm_max)</td></tr>
+<tr class="separator:a6ab9942ca671b0b6b1f445ef992db753"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a68a6931ce95999cb1d23ef6a39d2c65d"><td class="memItemLeft" align="right" valign="top"><a id="a68a6931ce95999cb1d23ef6a39d2c65d"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>export_word_series</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;data, int word_offset)</td></tr>
+<tr class="separator:a68a6931ce95999cb1d23ef6a39d2c65d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad6acf989bd60775b629ed3c854c024a0"><td class="memItemLeft" align="right" valign="top"><a id="ad6acf989bd60775b629ed3c854c024a0"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>export_word_series</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;data)</td></tr>
+<tr class="separator:ad6acf989bd60775b629ed3c854c024a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a836512c4aa3a805780bbc67483a78cd5"><td class="memItemLeft" align="right" valign="top"><a id="a836512c4aa3a805780bbc67483a78cd5"></a>
+<a class="el" href="class_sentence_series.html">SentenceSeries</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>copy</b> ()</td></tr>
+<tr class="separator:a836512c4aa3a805780bbc67483a78cd5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac28370290290d06f8207884a4abe9465"><td class="memItemLeft" align="right" valign="top"><a id="ac28370290290d06f8207884a4abe9465"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>select_parameters</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;input_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;output_parameter_names)</td></tr>
+<tr class="separator:ac28370290290d06f8207884a4abe9465"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac179ff27ac1d0d2373cf40ddddcf7189"><td class="memItemLeft" align="right" valign="top"><a id="ac179ff27ac1d0d2373cf40ddddcf7189"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>select_parameters</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;parameter_names)</td></tr>
+<tr class="separator:ac179ff27ac1d0d2373cf40ddddcf7189"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a8051bf7722f693797d589fbb6835afc2"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_sentence_series.html#a8051bf7722f693797d589fbb6835afc2">number_rows</a></td></tr>
+<tr class="memdesc:a8051bf7722f693797d589fbb6835afc2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the number of the rows in the dataset.  <a href="class_sentence_series.html#a8051bf7722f693797d589fbb6835afc2">More...</a><br /></td></tr>
+<tr class="separator:a8051bf7722f693797d589fbb6835afc2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a71ecf2220dbde9a683361a418fd79caa"><td class="memItemLeft" align="right" valign="top"><a id="a71ecf2220dbde9a683361a418fd79caa"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_sentence_series.html#a71ecf2220dbde9a683361a418fd79caa">filename</a></td></tr>
+<tr class="memdesc:a71ecf2220dbde9a683361a418fd79caa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifices the filename for the training or testing data. <br /></td></tr>
+<tr class="separator:a71ecf2220dbde9a683361a418fd79caa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a12648e58e8101346fb1d0b9008f89084"><td class="memItemLeft" align="right" valign="top"><a id="a12648e58e8101346fb1d0b9008f89084"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_sentence_series.html#a12648e58e8101346fb1d0b9008f89084">vocab</a></td></tr>
+<tr class="memdesc:a12648e58e8101346fb1d0b9008f89084"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps the word string to index of the word series in a particular string. <br /></td></tr>
+<tr class="separator:a12648e58e8101346fb1d0b9008f89084"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad0c1da927f87e6778900f1e93faf8a8e"><td class="memItemLeft" align="right" valign="top"><a id="ad0c1da927f87e6778900f1e93faf8a8e"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_sentence_series.html#ad0c1da927f87e6778900f1e93faf8a8e">word_index</a></td></tr>
+<tr class="memdesc:ad0c1da927f87e6778900f1e93faf8a8e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps the index to word string of the word series in a particular string. <br /></td></tr>
+<tr class="separator:ad0c1da927f87e6778900f1e93faf8a8e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a78609974545b5e015f3a5f477d876c4b"><td class="memItemLeft" align="right" valign="top"><a id="a78609974545b5e015f3a5f477d876c4b"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, <a class="el" href="class_word_series.html">WordSeries</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_sentence_series.html#a78609974545b5e015f3a5f477d876c4b">word_series</a></td></tr>
+<tr class="memdesc:a78609974545b5e015f3a5f477d876c4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps the word string to the word series in a particular string. <br /></td></tr>
+<tr class="separator:a78609974545b5e015f3a5f477d876c4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a8051bf7722f693797d589fbb6835afc2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8051bf7722f693797d589fbb6835afc2">&#9670;&nbsp;</a></span>number_rows</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int SentenceSeries::number_rows</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies the number of the rows in the dataset. </p>
+<p>This tells about the number of the unique words in the dataset. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>word_series/<a class="el" href="word__series_8hxx_source.html">word_series.hxx</a></li>
+<li>word_series/word_series.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_speciation_strategy-members.html b/docs/html/class_speciation_strategy-members.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
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+<script type="text/javascript" src="menu.js"></script>
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+/* @license-end */</script>
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+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
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+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">SpeciationStrategy Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="class_speciation_strategy.html#a76f36f0dd7c47727aef912d48f0fa26b">generate_genome</a>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, function&lt; void(int32_t, RNN_Genome *)&gt; &amp;mutate, function&lt; RNN_Genome *(RNN_Genome *, RNN_Genome *)&gt; &amp;crossover)=0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_speciation_strategy.html#afa3f2d35da2172a32ed06588ef09d4d0">get_best_fitness</a>()=0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_speciation_strategy.html#ad0796098d09c25bfee14d9f264bcba2d">get_best_genome</a>()=0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_speciation_strategy.html#a7699a7050ed5a66693f19e834e9ba082">get_generated_genomes</a>() const =0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_global_best_genome</b>()=0 (defined in <a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a>)</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_speciation_strategy.html#a1f07309130568d8cc79da44c8da6ca69">get_inserted_genomes</a>() const =0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_speciation_strategy.html#a163f199bc1dbf37157942cd3778cca20">get_strategy_information_headers</a>() const =0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_speciation_strategy.html#a5c6bbff0c19e3d347cef936d7b357fc0">get_strategy_information_values</a>() const =0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_speciation_strategy.html#a6bdef578fe33c628a81db35d75eaa473">get_worst_fitness</a>()=0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_speciation_strategy.html#ae84e9c1e0eaf02886b41b1d9adf488f4">get_worst_genome</a>()=0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_speciation_strategy.html#a1fd87178f38052aa934312e49819e509">insert_genome</a>(RNN_Genome *genome)=0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_speciation_strategy.html#a1d44f4c87ab00182e61f0fb364f274a9">print</a>(string indent=&quot;&quot;) const =0</td><td class="entry"><a class="el" href="class_speciation_strategy.html">SpeciationStrategy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
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+</html>
diff --git a/docs/html/class_speciation_strategy.html b/docs/html/class_speciation_strategy.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: SpeciationStrategy Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+var searchBox = new SearchBox("searchBox", "search",false,'Search');
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+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="class_speciation_strategy-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">SpeciationStrategy Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for SpeciationStrategy:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_speciation_strategy.png" usemap="#SpeciationStrategy_map" alt=""/>
+  <map id="SpeciationStrategy_map" name="SpeciationStrategy_map">
+<area href="class_island_speciation_strategy.html" alt="IslandSpeciationStrategy" shape="rect" coords="0,56,151,80"/>
+<area href="class_neat_speciation_strategy.html" alt="NeatSpeciationStrategy" shape="rect" coords="161,56,312,80"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a7699a7050ed5a66693f19e834e9ba082"><td class="memItemLeft" align="right" valign="top">virtual int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#a7699a7050ed5a66693f19e834e9ba082">get_generated_genomes</a> () const =0</td></tr>
+<tr class="separator:a7699a7050ed5a66693f19e834e9ba082"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1f07309130568d8cc79da44c8da6ca69"><td class="memItemLeft" align="right" valign="top">virtual int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#a1f07309130568d8cc79da44c8da6ca69">get_inserted_genomes</a> () const =0</td></tr>
+<tr class="separator:a1f07309130568d8cc79da44c8da6ca69"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afa3f2d35da2172a32ed06588ef09d4d0"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#afa3f2d35da2172a32ed06588ef09d4d0">get_best_fitness</a> ()=0</td></tr>
+<tr class="memdesc:afa3f2d35da2172a32ed06588ef09d4d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the fitness of the best genome of all the islands.  <a href="class_speciation_strategy.html#afa3f2d35da2172a32ed06588ef09d4d0">More...</a><br /></td></tr>
+<tr class="separator:afa3f2d35da2172a32ed06588ef09d4d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6bdef578fe33c628a81db35d75eaa473"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#a6bdef578fe33c628a81db35d75eaa473">get_worst_fitness</a> ()=0</td></tr>
+<tr class="memdesc:a6bdef578fe33c628a81db35d75eaa473"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the fitness of the worst genome of all the islands.  <a href="class_speciation_strategy.html#a6bdef578fe33c628a81db35d75eaa473">More...</a><br /></td></tr>
+<tr class="separator:a6bdef578fe33c628a81db35d75eaa473"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad0796098d09c25bfee14d9f264bcba2d"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#ad0796098d09c25bfee14d9f264bcba2d">get_best_genome</a> ()=0</td></tr>
+<tr class="memdesc:ad0796098d09c25bfee14d9f264bcba2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the best genome of all the islands.  <a href="class_speciation_strategy.html#ad0796098d09c25bfee14d9f264bcba2d">More...</a><br /></td></tr>
+<tr class="separator:ad0796098d09c25bfee14d9f264bcba2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae84e9c1e0eaf02886b41b1d9adf488f4"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#ae84e9c1e0eaf02886b41b1d9adf488f4">get_worst_genome</a> ()=0</td></tr>
+<tr class="memdesc:ae84e9c1e0eaf02886b41b1d9adf488f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the the worst genome of all the islands.  <a href="class_speciation_strategy.html#ae84e9c1e0eaf02886b41b1d9adf488f4">More...</a><br /></td></tr>
+<tr class="separator:ae84e9c1e0eaf02886b41b1d9adf488f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1fd87178f38052aa934312e49819e509"><td class="memItemLeft" align="right" valign="top">virtual int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#a1fd87178f38052aa934312e49819e509">insert_genome</a> (<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *genome)=0</td></tr>
+<tr class="memdesc:a1fd87178f38052aa934312e49819e509"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inserts a <b>copy</b> of the genome into this speciation strategy.  <a href="class_speciation_strategy.html#a1fd87178f38052aa934312e49819e509">More...</a><br /></td></tr>
+<tr class="separator:a1fd87178f38052aa934312e49819e509"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a76f36f0dd7c47727aef912d48f0fa26b"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#a76f36f0dd7c47727aef912d48f0fa26b">generate_genome</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(int32_t, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;mutate, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover)=0</td></tr>
+<tr class="memdesc:a76f36f0dd7c47727aef912d48f0fa26b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates a new genome.  <a href="class_speciation_strategy.html#a76f36f0dd7c47727aef912d48f0fa26b">More...</a><br /></td></tr>
+<tr class="separator:a76f36f0dd7c47727aef912d48f0fa26b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1d44f4c87ab00182e61f0fb364f274a9"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#a1d44f4c87ab00182e61f0fb364f274a9">print</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> indent=&quot;&quot;) const =0</td></tr>
+<tr class="memdesc:a1d44f4c87ab00182e61f0fb364f274a9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prints out all the island's populations.  <a href="class_speciation_strategy.html#a1d44f4c87ab00182e61f0fb364f274a9">More...</a><br /></td></tr>
+<tr class="separator:a1d44f4c87ab00182e61f0fb364f274a9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a163f199bc1dbf37157942cd3778cca20"><td class="memItemLeft" align="right" valign="top"><a id="a163f199bc1dbf37157942cd3778cca20"></a>
+virtual <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#a163f199bc1dbf37157942cd3778cca20">get_strategy_information_headers</a> () const =0</td></tr>
+<tr class="memdesc:a163f199bc1dbf37157942cd3778cca20"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets speciation strategy information headers for logs. <br /></td></tr>
+<tr class="separator:a163f199bc1dbf37157942cd3778cca20"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5c6bbff0c19e3d347cef936d7b357fc0"><td class="memItemLeft" align="right" valign="top"><a id="a5c6bbff0c19e3d347cef936d7b357fc0"></a>
+virtual <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_speciation_strategy.html#a5c6bbff0c19e3d347cef936d7b357fc0">get_strategy_information_values</a> () const =0</td></tr>
+<tr class="memdesc:a5c6bbff0c19e3d347cef936d7b357fc0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets speciation strategy information values for logs. <br /></td></tr>
+<tr class="separator:a5c6bbff0c19e3d347cef936d7b357fc0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2f6f73672fca1cc43a761c9bd15a2888"><td class="memItemLeft" align="right" valign="top"><a id="a2f6f73672fca1cc43a761c9bd15a2888"></a>
+virtual <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>get_global_best_genome</b> ()=0</td></tr>
+<tr class="separator:a2f6f73672fca1cc43a761c9bd15a2888"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a76f36f0dd7c47727aef912d48f0fa26b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a76f36f0dd7c47727aef912d48f0fa26b">&#9670;&nbsp;</a></span>generate_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>* SpeciationStrategy::generate_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rng_0_1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;&#160;</td>
+          <td class="paramname"><em>generator</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; void(int32_t, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>mutate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>crossover</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates a new genome. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">rng_0_1</td><td>is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). </td></tr>
+    <tr><td class="paramname">generator</td><td>is the random number generator </td></tr>
+    <tr><td class="paramname">mutate</td><td>is the a function which performs a mutation on a genome </td></tr>
+    <tr><td class="paramname">crossover</td><td>is the function which performs crossover between two genomes</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>the newly generated genome. </dd></dl>
+
+<p>Implemented in <a class="el" href="class_island_speciation_strategy.html#a1d209dc38c374ffcb8ac7c34f72b2ce9">IslandSpeciationStrategy</a>, and <a class="el" href="class_neat_speciation_strategy.html#ae86f8696ddab1b6cc595b6e2ef0371ae">NeatSpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="afa3f2d35da2172a32ed06588ef09d4d0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afa3f2d35da2172a32ed06588ef09d4d0">&#9670;&nbsp;</a></span>get_best_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double SpeciationStrategy::get_best_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the fitness of the best genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best fitness over all islands </dd></dl>
+
+<p>Implemented in <a class="el" href="class_island_speciation_strategy.html#a4db5c946c86373cf256177b35553b808">IslandSpeciationStrategy</a>, and <a class="el" href="class_neat_speciation_strategy.html#a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99">NeatSpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="ad0796098d09c25bfee14d9f264bcba2d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad0796098d09c25bfee14d9f264bcba2d">&#9670;&nbsp;</a></span>get_best_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>* SpeciationStrategy::get_best_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the best genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best genome of all islands </dd></dl>
+
+<p>Implemented in <a class="el" href="class_island_speciation_strategy.html#a1a8a770c165b22a5070e11a3f579375e">IslandSpeciationStrategy</a>, and <a class="el" href="class_neat_speciation_strategy.html#aecf62aeba94c1f8d786215c10ea4774b">NeatSpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a7699a7050ed5a66693f19e834e9ba082"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7699a7050ed5a66693f19e834e9ba082">&#9670;&nbsp;</a></span>get_generated_genomes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual int32_t SpeciationStrategy::get_generated_genomes </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the number of generated genomes. </dd></dl>
+
+<p>Implemented in <a class="el" href="class_island_speciation_strategy.html#a2b75aca60616268e4a6aee93ee4e5aee">IslandSpeciationStrategy</a>, and <a class="el" href="class_neat_speciation_strategy.html#af7e48fd1afb5a9c1b422ad251366263e">NeatSpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a1f07309130568d8cc79da44c8da6ca69"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1f07309130568d8cc79da44c8da6ca69">&#9670;&nbsp;</a></span>get_inserted_genomes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual int32_t SpeciationStrategy::get_inserted_genomes </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<dl class="section return"><dt>Returns</dt><dd>the number of inserted genomes. </dd></dl>
+
+<p>Implemented in <a class="el" href="class_island_speciation_strategy.html#ab44e2abd372cd97932dd87ed1b9c62c2">IslandSpeciationStrategy</a>, and <a class="el" href="class_neat_speciation_strategy.html#aba55a9f0006af882fd613bd0676555eb">NeatSpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a6bdef578fe33c628a81db35d75eaa473"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6bdef578fe33c628a81db35d75eaa473">&#9670;&nbsp;</a></span>get_worst_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double SpeciationStrategy::get_worst_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the fitness of the worst genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst fitness over all islands </dd></dl>
+
+<p>Implemented in <a class="el" href="class_island_speciation_strategy.html#a516627db390391867d6dd02f78e27caf">IslandSpeciationStrategy</a>, and <a class="el" href="class_neat_speciation_strategy.html#acbd3eaa05db725de60074276cd0bb449">NeatSpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="ae84e9c1e0eaf02886b41b1d9adf488f4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae84e9c1e0eaf02886b41b1d9adf488f4">&#9670;&nbsp;</a></span>get_worst_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a>* SpeciationStrategy::get_worst_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the the worst genome of all the islands. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst genome of all islands </dd></dl>
+
+<p>Implemented in <a class="el" href="class_island_speciation_strategy.html#a563860351e5f176d539bc297949d490f">IslandSpeciationStrategy</a>, and <a class="el" href="class_neat_speciation_strategy.html#a8bc6ad6a0740e2f6072aef3ad14dd3f7">NeatSpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a1fd87178f38052aa934312e49819e509"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1fd87178f38052aa934312e49819e509">&#9670;&nbsp;</a></span>insert_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual int32_t SpeciationStrategy::insert_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td>
+          <td class="paramname"><em>genome</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Inserts a <b>copy</b> of the genome into this speciation strategy. </p>
+<p>The caller of this method will need to free the memory of the genome passed into this method.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">genome</td><td>is the genome to insert. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>a value &lt; 0 if the genome was not inserted, 0 if it was a new best genome or &gt; 0 otherwise. </dd></dl>
+
+<p>Implemented in <a class="el" href="class_island_speciation_strategy.html#a6ae98982d01c68214e4bd703fe18146f">IslandSpeciationStrategy</a>, and <a class="el" href="class_neat_speciation_strategy.html#aa2b2521a400435cbd1856aadda2051e0">NeatSpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a1d44f4c87ab00182e61f0fb364f274a9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1d44f4c87ab00182e61f0fb364f274a9">&#9670;&nbsp;</a></span>print()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void SpeciationStrategy::print </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>indent</em> = <code>&quot;&quot;</code></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Prints out all the island's populations. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">indent</td><td>is how much to indent what is printed out </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implemented in <a class="el" href="class_island_speciation_strategy.html#a4ba6785df117932f3c465cbc31a5ca3f">IslandSpeciationStrategy</a>, and <a class="el" href="class_neat_speciation_strategy.html#abef17e0293c2e0a64b3b4b3b9b7775d2">NeatSpeciationStrategy</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>rnn/<a class="el" href="speciation__strategy_8hxx_source.html">speciation_strategy.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_speciation_strategy.png b/docs/html/class_speciation_strategy.png
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+++ b/docs/html/class_species-members.html
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+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">Species Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_species.html">Species</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="class_species.html#aac66b182441d124023b4df1167c7bc35">contains</a>(RNN_Genome *genome)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_species.html#add70418d8b64a815998e66c89824d646">copy_random_genome</a>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, RNN_Genome **genome)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_species.html#a1f3a1b23040cc266a8c9e49436f0c8a7">copy_two_random_genomes</a>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, RNN_Genome **genome1, RNN_Genome **genome2)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>erase_species</b>() (defined in <a class="el" href="class_species.html">Species</a>)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>fitness_sharing_remove</b>(double fitness_threshold, function&lt; double(RNN_Genome *, RNN_Genome *)&gt; &amp;get_distance) (defined in <a class="el" href="class_species.html">Species</a>)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_species.html#a6b156c1f48620bc39bc9efe6c9324e81">genomes</a></td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_species.html#a2e3034b48d9ed1f263128ffc8ca3a295">get_best_fitness</a>()</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_species.html#a01dcea3ec17810b46167e751b2e6f4cf">get_best_genome</a>()</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_genomes</b>() (defined in <a class="el" href="class_species.html">Species</a>)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_latested_genome</b>() (defined in <a class="el" href="class_species.html">Species</a>)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_species.html#afceb50adb6350b2576e897c30380fee5">get_random_genome</a>(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_species_not_improving_count</b>() (defined in <a class="el" href="class_species.html">Species</a>)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_species.html#a10669846e7646b47696d90838e379a94">get_worst_fitness</a>()</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_species.html#a0a224a20baa5eb5055dada490c738d30">get_worst_genome</a>()</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_species.html#a2e22624d59864dbecd5ee16103b458bd">id</a></td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_species.html#a459a9676c5c86837233c6cc4c3843475">insert_genome</a>(RNN_Genome *genome)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inserted_genome_id</b> (defined in <a class="el" href="class_species.html">Species</a>)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_species.html#a2e9e0780d547c253c8532b5866b7bd4d">print</a>(string indent=&quot;&quot;)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_species_not_improving_count</b>(int32_t count) (defined in <a class="el" href="class_species.html">Species</a>)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_species.html#af9978e8876f3d43c5238225ad7b8de34">size</a>()</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_species.html#a58b75aebb5ad400b89cb41e5d7700092">Species</a>(int32_t id)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>species_not_improving_count</b> (defined in <a class="el" href="class_species.html">Species</a>)</td><td class="entry"><a class="el" href="class_species.html">Species</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_species.html b/docs/html/class_species.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Species Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
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+  initMenu('',true,false,'search.php','Search');
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+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+
+<!-- iframe showing the search results (closed by default) -->
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+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
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+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_species-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Species Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a58b75aebb5ad400b89cb41e5d7700092"><td class="memItemLeft" align="right" valign="top"><a id="a58b75aebb5ad400b89cb41e5d7700092"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a58b75aebb5ad400b89cb41e5d7700092">Species</a> (int32_t <a class="el" href="class_species.html#a2e22624d59864dbecd5ee16103b458bd">id</a>)</td></tr>
+<tr class="memdesc:a58b75aebb5ad400b89cb41e5d7700092"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initializes a species. <br /></td></tr>
+<tr class="separator:a58b75aebb5ad400b89cb41e5d7700092"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2e3034b48d9ed1f263128ffc8ca3a295"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a2e3034b48d9ed1f263128ffc8ca3a295">get_best_fitness</a> ()</td></tr>
+<tr class="memdesc:a2e3034b48d9ed1f263128ffc8ca3a295"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the fitness of the best genome in the island.  <a href="class_species.html#a2e3034b48d9ed1f263128ffc8ca3a295">More...</a><br /></td></tr>
+<tr class="separator:a2e3034b48d9ed1f263128ffc8ca3a295"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a10669846e7646b47696d90838e379a94"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a10669846e7646b47696d90838e379a94">get_worst_fitness</a> ()</td></tr>
+<tr class="memdesc:a10669846e7646b47696d90838e379a94"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the fitness of the worst genome in the island.  <a href="class_species.html#a10669846e7646b47696d90838e379a94">More...</a><br /></td></tr>
+<tr class="separator:a10669846e7646b47696d90838e379a94"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a01dcea3ec17810b46167e751b2e6f4cf"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a01dcea3ec17810b46167e751b2e6f4cf">get_best_genome</a> ()</td></tr>
+<tr class="memdesc:a01dcea3ec17810b46167e751b2e6f4cf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the best genomme in the island.  <a href="class_species.html#a01dcea3ec17810b46167e751b2e6f4cf">More...</a><br /></td></tr>
+<tr class="separator:a01dcea3ec17810b46167e751b2e6f4cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0a224a20baa5eb5055dada490c738d30"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a0a224a20baa5eb5055dada490c738d30">get_worst_genome</a> ()</td></tr>
+<tr class="memdesc:a0a224a20baa5eb5055dada490c738d30"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the worst genomme in the island.  <a href="class_species.html#a0a224a20baa5eb5055dada490c738d30">More...</a><br /></td></tr>
+<tr class="separator:a0a224a20baa5eb5055dada490c738d30"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afceb50adb6350b2576e897c30380fee5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#afceb50adb6350b2576e897c30380fee5">get_random_genome</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator)</td></tr>
+<tr class="memdesc:afceb50adb6350b2576e897c30380fee5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the best genomme in the island.  <a href="class_species.html#afceb50adb6350b2576e897c30380fee5">More...</a><br /></td></tr>
+<tr class="separator:afceb50adb6350b2576e897c30380fee5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af9978e8876f3d43c5238225ad7b8de34"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#af9978e8876f3d43c5238225ad7b8de34">size</a> ()</td></tr>
+<tr class="memdesc:af9978e8876f3d43c5238225ad7b8de34"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the size of the island.  <a href="class_species.html#af9978e8876f3d43c5238225ad7b8de34">More...</a><br /></td></tr>
+<tr class="separator:af9978e8876f3d43c5238225ad7b8de34"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aac66b182441d124023b4df1167c7bc35"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#aac66b182441d124023b4df1167c7bc35">contains</a> (<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *genome)</td></tr>
+<tr class="memdesc:aac66b182441d124023b4df1167c7bc35"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks to see if a genome already exists in the island, using the RNN_Genome::equals method (which checks to see if all edges and nodes are the same, but not necessarily weights).  <a href="class_species.html#aac66b182441d124023b4df1167c7bc35">More...</a><br /></td></tr>
+<tr class="separator:aac66b182441d124023b4df1167c7bc35"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:add70418d8b64a815998e66c89824d646"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#add70418d8b64a815998e66c89824d646">copy_random_genome</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **genome)</td></tr>
+<tr class="memdesc:add70418d8b64a815998e66c89824d646"><td class="mdescLeft">&#160;</td><td class="mdescRight">Selects a genome from the island at random and returns a copy of it.  <a href="class_species.html#add70418d8b64a815998e66c89824d646">More...</a><br /></td></tr>
+<tr class="separator:add70418d8b64a815998e66c89824d646"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1f3a1b23040cc266a8c9e49436f0c8a7"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a1f3a1b23040cc266a8c9e49436f0c8a7">copy_two_random_genomes</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng_0_1, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **genome1, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **genome2)</td></tr>
+<tr class="memdesc:a1f3a1b23040cc266a8c9e49436f0c8a7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Selects two different genomes from the island at random and returns copies of them.  <a href="class_species.html#a1f3a1b23040cc266a8c9e49436f0c8a7">More...</a><br /></td></tr>
+<tr class="separator:a1f3a1b23040cc266a8c9e49436f0c8a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a459a9676c5c86837233c6cc4c3843475"><td class="memItemLeft" align="right" valign="top">int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a459a9676c5c86837233c6cc4c3843475">insert_genome</a> (<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *genome)</td></tr>
+<tr class="memdesc:a459a9676c5c86837233c6cc4c3843475"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inserts a genome into the island.  <a href="class_species.html#a459a9676c5c86837233c6cc4c3843475">More...</a><br /></td></tr>
+<tr class="separator:a459a9676c5c86837233c6cc4c3843475"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2e9e0780d547c253c8532b5866b7bd4d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a2e9e0780d547c253c8532b5866b7bd4d">print</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> indent=&quot;&quot;)</td></tr>
+<tr class="memdesc:a2e9e0780d547c253c8532b5866b7bd4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prints out the state of this island.  <a href="class_species.html#a2e9e0780d547c253c8532b5866b7bd4d">More...</a><br /></td></tr>
+<tr class="separator:a2e9e0780d547c253c8532b5866b7bd4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa17a7a4dbde760d366939d913b2274e0"><td class="memItemLeft" align="right" valign="top"><a id="aa17a7a4dbde760d366939d913b2274e0"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_genomes</b> ()</td></tr>
+<tr class="separator:aa17a7a4dbde760d366939d913b2274e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aae7bdabaf8e88c01b611543baa5f3e29"><td class="memItemLeft" align="right" valign="top"><a id="aae7bdabaf8e88c01b611543baa5f3e29"></a>
+<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>get_latested_genome</b> ()</td></tr>
+<tr class="separator:aae7bdabaf8e88c01b611543baa5f3e29"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac49adf285a7511ee9d0eef9abb84cb66"><td class="memItemLeft" align="right" valign="top"><a id="ac49adf285a7511ee9d0eef9abb84cb66"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>fitness_sharing_remove</b> (double fitness_threshold, <a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">function</a>&lt; double(<a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *, <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;get_distance)</td></tr>
+<tr class="separator:ac49adf285a7511ee9d0eef9abb84cb66"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0121e0eb365c4f4b599fe8f352c4e90d"><td class="memItemLeft" align="right" valign="top"><a id="a0121e0eb365c4f4b599fe8f352c4e90d"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>erase_species</b> ()</td></tr>
+<tr class="separator:a0121e0eb365c4f4b599fe8f352c4e90d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a83f64a0c9132b5c21e625500211ba130"><td class="memItemLeft" align="right" valign="top"><a id="a83f64a0c9132b5c21e625500211ba130"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><b>get_species_not_improving_count</b> ()</td></tr>
+<tr class="separator:a83f64a0c9132b5c21e625500211ba130"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa2ee080743b2d5ee89f156482736d704"><td class="memItemLeft" align="right" valign="top"><a id="aa2ee080743b2d5ee89f156482736d704"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>set_species_not_improving_count</b> (int32_t count)</td></tr>
+<tr class="separator:aa2ee080743b2d5ee89f156482736d704"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a2e22624d59864dbecd5ee16103b458bd"><td class="memItemLeft" align="right" valign="top"><a id="a2e22624d59864dbecd5ee16103b458bd"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a2e22624d59864dbecd5ee16103b458bd">id</a></td></tr>
+<tr class="memdesc:a2e22624d59864dbecd5ee16103b458bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">An integer ID for this species. <br /></td></tr>
+<tr class="separator:a2e22624d59864dbecd5ee16103b458bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a995da794f2f4a8b8b314d3d402875d5b"><td class="memItemLeft" align="right" valign="top"><a id="a995da794f2f4a8b8b314d3d402875d5b"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int32_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>inserted_genome_id</b></td></tr>
+<tr class="separator:a995da794f2f4a8b8b314d3d402875d5b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6b156c1f48620bc39bc9efe6c9324e81"><td class="memItemLeft" align="right" valign="top"><a id="a6b156c1f48620bc39bc9efe6c9324e81"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_species.html#a6b156c1f48620bc39bc9efe6c9324e81">genomes</a></td></tr>
+<tr class="memdesc:a6b156c1f48620bc39bc9efe6c9324e81"><td class="mdescLeft">&#160;</td><td class="mdescRight">The genomes on this species, stored in sorted order best (front) to worst (back). <br /></td></tr>
+<tr class="separator:a6b156c1f48620bc39bc9efe6c9324e81"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5b23e228631a99dadd9602b46324a20e"><td class="memItemLeft" align="right" valign="top"><a id="a5b23e228631a99dadd9602b46324a20e"></a>
+int32_t&#160;</td><td class="memItemRight" valign="bottom"><b>species_not_improving_count</b></td></tr>
+<tr class="separator:a5b23e228631a99dadd9602b46324a20e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="aac66b182441d124023b4df1167c7bc35"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aac66b182441d124023b4df1167c7bc35">&#9670;&nbsp;</a></span>contains()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Species::contains </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td>
+          <td class="paramname"><em>genome</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks to see if a genome already exists in the island, using the RNN_Genome::equals method (which checks to see if all edges and nodes are the same, but not necessarily weights). </p>
+<dl class="section return"><dt>Returns</dt><dd>the index in the island of the duplicate genome, -1 otherwise. </dd></dl>
+
+</div>
+</div>
+<a id="add70418d8b64a815998e66c89824d646"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#add70418d8b64a815998e66c89824d646">&#9670;&nbsp;</a></span>copy_random_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Species::copy_random_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rng_0_1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;&#160;</td>
+          <td class="paramname"><em>generator</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **&#160;</td>
+          <td class="paramname"><em>genome</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Selects a genome from the island at random and returns a copy of it. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">rng_0_1</td><td>is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). </td></tr>
+    <tr><td class="paramname">generator</td><td>is the random number generator </td></tr>
+    <tr><td class="paramname">genome</td><td>will be the copied genome, an addresss to a pointer needs to be passed. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a1f3a1b23040cc266a8c9e49436f0c8a7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1f3a1b23040cc266a8c9e49436f0c8a7">&#9670;&nbsp;</a></span>copy_two_random_genomes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Species::copy_two_random_genomes </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rng_0_1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;&#160;</td>
+          <td class="paramname"><em>generator</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **&#160;</td>
+          <td class="paramname"><em>genome1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> **&#160;</td>
+          <td class="paramname"><em>genome2</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Selects two different genomes from the island at random and returns copies of them. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">rng_0_1</td><td>is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). </td></tr>
+    <tr><td class="paramname">generator</td><td>is the random number generator </td></tr>
+    <tr><td class="paramname">genome1</td><td>will be the first copied genome, an addresss to a pointer needs to be passed. </td></tr>
+    <tr><td class="paramname">genome2</td><td>will be the second copied genome, an addresss to a pointer needs to be passed. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a2e3034b48d9ed1f263128ffc8ca3a295"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2e3034b48d9ed1f263128ffc8ca3a295">&#9670;&nbsp;</a></span>get_best_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double Species::get_best_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the fitness of the best genome in the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best fitness of the island </dd></dl>
+
+</div>
+</div>
+<a id="a01dcea3ec17810b46167e751b2e6f4cf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a01dcea3ec17810b46167e751b2e6f4cf">&#9670;&nbsp;</a></span>get_best_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * Species::get_best_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the best genomme in the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best genome in the island </dd></dl>
+
+</div>
+</div>
+<a id="afceb50adb6350b2576e897c30380fee5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afceb50adb6350b2576e897c30380fee5">&#9670;&nbsp;</a></span>get_random_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * Species::get_random_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rng_0_1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;&#160;</td>
+          <td class="paramname"><em>generator</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the best genomme in the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the best genome in the island </dd></dl>
+
+</div>
+</div>
+<a id="a10669846e7646b47696d90838e379a94"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a10669846e7646b47696d90838e379a94">&#9670;&nbsp;</a></span>get_worst_fitness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double Species::get_worst_fitness </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the fitness of the worst genome in the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst fitness of the island </dd></dl>
+
+</div>
+</div>
+<a id="a0a224a20baa5eb5055dada490c738d30"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0a224a20baa5eb5055dada490c738d30">&#9670;&nbsp;</a></span>get_worst_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> * Species::get_worst_genome </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the worst genomme in the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the worst genome in the island </dd></dl>
+
+</div>
+</div>
+<a id="a459a9676c5c86837233c6cc4c3843475"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a459a9676c5c86837233c6cc4c3843475">&#9670;&nbsp;</a></span>insert_genome()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Species::insert_genome </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="class_r_n_n___genome.html">RNN_Genome</a> *&#160;</td>
+          <td class="paramname"><em>genome</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Inserts a genome into the island. </p>
+<p>Genomes are inserted in best to worst order genomes[0] will have the best fitness and genomes[size - 1] will have the worst.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">genome</td><td>is the genome to be inserted. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>-1 if not inserted, otherwise the index it was inserted at </dd></dl>
+
+</div>
+</div>
+<a id="a2e9e0780d547c253c8532b5866b7bd4d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2e9e0780d547c253c8532b5866b7bd4d">&#9670;&nbsp;</a></span>print()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void Species::print </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td>
+          <td class="paramname"><em>indent</em> = <code>&quot;&quot;</code></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Prints out the state of this island. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">indent</td><td>is how much to indent what is printed out </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="af9978e8876f3d43c5238225ad7b8de34"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af9978e8876f3d43c5238225ad7b8de34">&#9670;&nbsp;</a></span>size()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int32_t Species::size </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the size of the island. </p>
+<dl class="section return"><dt>Returns</dt><dd>the number of genomes in this island. </dd></dl>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="species_8hxx_source.html">species.hxx</a></li>
+<li>rnn/species.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_time_series-members.html b/docs/html/class_time_series-members.html
new file mode 100644
index 00000000..6cbc40e2
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">TimeSeries Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_time_series.html">TimeSeries</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_value</b>(double value) (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>average</b> (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>calculate_statistics</b>() (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>copy_values</b>(vector&lt; double &gt; &amp;series) (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>cut</b>(int32_t start, int32_t stop) (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_average</b>() const (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_correlation</b>(const TimeSeries *other, int32_t lag) const (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_max</b>() const (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_max_change</b>() const (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_min</b>() const (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_min_change</b>() const (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_values</b>() const (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_std_dev</b>() const (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_value</b>(int i) (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_variance</b>() const (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>max</b> (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>max_change</b> (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>min</b> (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>min_change</b> (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>name</b> (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_avg_std_dev</b>(double avg, double std_dev, double norm_max) (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_min_max</b>(double min, double max) (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_statistics</b>() (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>std_dev</b> (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>TimeSeries</b>() (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>TimeSeries</b>(string _name) (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>values</b> (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>variance</b> (defined in <a class="el" href="class_time_series.html">TimeSeries</a>)</td><td class="entry"><a class="el" href="class_time_series.html">TimeSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: TimeSeries Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
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+ </tbody>
+</table>
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+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_time_series-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">TimeSeries Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="memitem:a94dec87ce25a87b4efbbfc49234d34e1"><td class="memItemLeft" align="right" valign="top"><a id="a94dec87ce25a87b4efbbfc49234d34e1"></a>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>add_value</b> (double value)</td></tr>
+<tr class="separator:af5210b5c89d3753c6ee188195c0bcd44"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_value</b> (int i)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>calculate_statistics</b> ()</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_min</b> () const</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_variance</b> () const</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_min_change</b> () const</td></tr>
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+<tr class="memitem:aead2c24ed81ffe155f8216c3f7b9095e"><td class="memItemLeft" align="right" valign="top"><a id="aead2c24ed81ffe155f8216c3f7b9095e"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_max_change</b> () const</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_min_max</b> (double min, double max)</td></tr>
+<tr class="separator:a9f747fa2694e96804f20a0626f7cb46c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_avg_std_dev</b> (double avg, double std_dev, double norm_max)</td></tr>
+<tr class="separator:a5a54bcfbadba29460621c974e2a94f44"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>cut</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> start, <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> stop)</td></tr>
+<tr class="separator:a1c87cf135c425de70550710f9c5f1d0f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_correlation</b> (const <a class="el" href="class_time_series.html">TimeSeries</a> *other, <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> lag) const</td></tr>
+<tr class="separator:ac3868470a5ed960f9a737e42b49baa4e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aff3fd5901ab67b755fec5a7d767c35a2"><td class="memItemLeft" align="right" valign="top"><a id="aff3fd5901ab67b755fec5a7d767c35a2"></a>
+<a class="el" href="class_time_series.html">TimeSeries</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>copy</b> ()</td></tr>
+<tr class="separator:aff3fd5901ab67b755fec5a7d767c35a2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a309faa5de03f6011ed67c83a6976d16a"><td class="memItemLeft" align="right" valign="top"><a id="a309faa5de03f6011ed67c83a6976d16a"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>copy_values</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;series)</td></tr>
+<tr class="separator:a309faa5de03f6011ed67c83a6976d16a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:aa9fdde695032e2f5e0c5e3f48924bd49"><td class="memItemLeft" align="right" valign="top"><a id="aa9fdde695032e2f5e0c5e3f48924bd49"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><b>name</b></td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>min</b></td></tr>
+<tr class="separator:a5dabaf7e9ae4c56b97a377ce8bd24558"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afc947d70351cc4ef3b10ed6e6d77c7ce"><td class="memItemLeft" align="right" valign="top"><a id="afc947d70351cc4ef3b10ed6e6d77c7ce"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>average</b></td></tr>
+<tr class="separator:afc947d70351cc4ef3b10ed6e6d77c7ce"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae34f322d950a627c902923ff82bcae19"><td class="memItemLeft" align="right" valign="top"><a id="ae34f322d950a627c902923ff82bcae19"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>max</b></td></tr>
+<tr class="separator:ae34f322d950a627c902923ff82bcae19"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a15bfcb1deb136cd05624a6da9c4be8cc"><td class="memItemLeft" align="right" valign="top"><a id="a15bfcb1deb136cd05624a6da9c4be8cc"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>std_dev</b></td></tr>
+<tr class="separator:a15bfcb1deb136cd05624a6da9c4be8cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab6f7818746f7178a4be203fd8add0daa"><td class="memItemLeft" align="right" valign="top"><a id="ab6f7818746f7178a4be203fd8add0daa"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>variance</b></td></tr>
+<tr class="separator:ab6f7818746f7178a4be203fd8add0daa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3aadd7d227502c90f655004014c35879"><td class="memItemLeft" align="right" valign="top"><a id="a3aadd7d227502c90f655004014c35879"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>min_change</b></td></tr>
+<tr class="separator:a3aadd7d227502c90f655004014c35879"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a44bebfe451c623358a16af4d4e2d4a38"><td class="memItemLeft" align="right" valign="top"><a id="a44bebfe451c623358a16af4d4e2d4a38"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>max_change</b></td></tr>
+<tr class="separator:a44bebfe451c623358a16af4d4e2d4a38"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a18f879a5a1d1b4efd3ed3063b1d6bf17"><td class="memItemLeft" align="right" valign="top"><a id="a18f879a5a1d1b4efd3ed3063b1d6bf17"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>values</b></td></tr>
+<tr class="separator:a18f879a5a1d1b4efd3ed3063b1d6bf17"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>time_series/<a class="el" href="time__series_8hxx_source.html">time_series.hxx</a></li>
+<li>time_series/time_series.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_time_series_set-members.html b/docs/html/class_time_series_set-members.html
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+++ b/docs/html/class_time_series_set-members.html
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+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+
+<!-- iframe showing the search results (closed by default) -->
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+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
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+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">TimeSeriesSet Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_time_series</b>(string name) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cut</b>(int32_t start, int32_t stop) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>export_time_series</b>(vector&lt; vector&lt; double &gt; &gt; &amp;data) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>export_time_series</b>(vector&lt; vector&lt; double &gt; &gt; &amp;data, const vector&lt; string &gt; &amp;requested_fields) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_time_series_set.html#ad85e413579132f448ec10545f733d452">export_time_series</a>(vector&lt; vector&lt; double &gt; &gt; &amp;data, const vector&lt; string &gt; &amp;requested_fields, const vector&lt; string &gt; &amp;shift_fields, int32_t time_offset)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>fields</b> (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>filename</b> (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_average</b>(string field) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_correlation</b>(string field1, string field2, int32_t lag) const (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_fields</b>() const (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_filename</b>() const (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_max</b>(string field) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_max_change</b>(string field) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_min</b>(string field) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_min_change</b>(string field) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_columns</b>() const (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_rows</b>() const (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_series</b>(string field_name, vector&lt; double &gt; &amp;series) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_std_dev</b>(string field) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_variance</b>(string field) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_avg_std_dev</b>(string field, double avg, double std_dev, double norm_max) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_min_max</b>(string field, double min, double max) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>number_rows</b> (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>select_parameters</b>(const vector&lt; string &gt; &amp;parameter_names) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>select_parameters</b>(const vector&lt; string &gt; &amp;input_parameter_names, const vector&lt; string &gt; &amp;output_parameter_names) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>split</b>(int slices, vector&lt; TimeSeriesSet * &gt; &amp;sub_series) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>time_series</b> (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>TimeSeriesSet</b>() (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>TimeSeriesSet</b>(string _filename, const vector&lt; string &gt; &amp;_fields) (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~TimeSeriesSet</b>() (defined in <a class="el" href="class_time_series_set.html">TimeSeriesSet</a>)</td><td class="entry"><a class="el" href="class_time_series_set.html">TimeSeriesSet</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_time_series_set.html b/docs/html/class_time_series_set.html
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_time_series_set-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">TimeSeriesSet Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a755abcf37b7074e042e88f1110911bde"><td class="memItemLeft" align="right" valign="top"><a id="a755abcf37b7074e042e88f1110911bde"></a>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>add_time_series</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> name)</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_rows</b> () const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_columns</b> () const</td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_fields</b> () const</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_min</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_average</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_max</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_std_dev</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_min_change</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_max_change</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field)</td></tr>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_correlation</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field1, <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field2, <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> lag) const</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_min_max</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field, double min, double max)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_avg_std_dev</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field, double avg, double std_dev, double norm_max)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>export_time_series</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;data)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>export_time_series</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;data, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;requested_fields)</td></tr>
+<tr class="separator:af91af3295680f6596fc68eb10c2a7845"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad85e413579132f448ec10545f733d452"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_time_series_set.html#ad85e413579132f448ec10545f733d452">export_time_series</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;data, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;requested_fields, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;shift_fields, <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> time_offset)</td></tr>
+<tr class="memdesc:ad85e413579132f448ec10545f733d452"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time offset &lt; 0 generates input data.  <a href="class_time_series_set.html#ad85e413579132f448ec10545f733d452">More...</a><br /></td></tr>
+<tr class="separator:ad85e413579132f448ec10545f733d452"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aec44a37363eaecc446c81b58cb44781b"><td class="memItemLeft" align="right" valign="top"><a id="aec44a37363eaecc446c81b58cb44781b"></a>
+<a class="el" href="class_time_series_set.html">TimeSeriesSet</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>copy</b> ()</td></tr>
+<tr class="separator:aec44a37363eaecc446c81b58cb44781b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a04988df43c793bdf97f9d2d94ca40b74"><td class="memItemLeft" align="right" valign="top"><a id="a04988df43c793bdf97f9d2d94ca40b74"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>cut</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> start, <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> stop)</td></tr>
+<tr class="separator:a04988df43c793bdf97f9d2d94ca40b74"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>split</b> (int slices, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="el" href="class_time_series_set.html">TimeSeriesSet</a> * &gt; &amp;sub_series)</td></tr>
+<tr class="separator:a9e5eff858b9fb54cff400103e47932af"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>select_parameters</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;parameter_names)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>select_parameters</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;input_parameter_names, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;output_parameter_names)</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a03997d74a405f641741509f14d3adfa5"><td class="memItemLeft" align="right" valign="top"><a id="a03997d74a405f641741509f14d3adfa5"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>number_rows</b></td></tr>
+<tr class="separator:a03997d74a405f641741509f14d3adfa5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><b>filename</b></td></tr>
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+<tr class="memitem:ae82ba27c516b80c9f581dc61298cdf09"><td class="memItemLeft" align="right" valign="top"><a id="ae82ba27c516b80c9f581dc61298cdf09"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>fields</b></td></tr>
+<tr class="separator:ae82ba27c516b80c9f581dc61298cdf09"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3a63032b26d8ace6e9ab5f9ea1e0acff"><td class="memItemLeft" align="right" valign="top"><a id="a3a63032b26d8ace6e9ab5f9ea1e0acff"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, <a class="el" href="class_time_series.html">TimeSeries</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>time_series</b></td></tr>
+<tr class="separator:a3a63032b26d8ace6e9ab5f9ea1e0acff"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ad85e413579132f448ec10545f733d452"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad85e413579132f448ec10545f733d452">&#9670;&nbsp;</a></span>export_time_series()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void TimeSeriesSet::export_time_series </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>data</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>requested_fields</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>shift_fields</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a>&#160;</td>
+          <td class="paramname"><em>time_offset</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Time offset &lt; 0 generates input data. </p>
+<p>Do not use the last &lt;time_offset&gt; values Time offset &gt; 0 generates output data. Do not use the first &lt;time_offset&gt; values </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>time_series/<a class="el" href="time__series_8hxx_source.html">time_series.hxx</a></li>
+<li>time_series/time_series.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_time_series_sets-members.html b/docs/html/class_time_series_sets-members.html
new file mode 100644
index 00000000..5a5948a8
--- /dev/null
+++ b/docs/html/class_time_series_sets-members.html
@@ -0,0 +1,124 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">TimeSeriesSets Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>all_parameter_names</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>denormalize</b>(string field_name, double value) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_time_series_sets.html#a2ee946c4092fa81d3dc2cbf4c65b3388">export_series_by_name</a>(string field_name, vector&lt; vector&lt; double &gt; &gt; &amp;exported_series)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_time_series_sets.html#a45b61a73ae84cdafce66a10dd9930534">export_test_series</a>(int time_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_time_series_sets.html#a5c8ac2daba0424ae774be8c9bee789b6">export_time_series</a>(const vector&lt; int &gt; &amp;series_indexes, int time_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_time_series_sets.html#af7b9f9319c330cb6af8475ce1c2aa545">export_training_series</a>(int time_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>filenames</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>generate_from_arguments</b>(const vector&lt; string &gt; &amp;arguments) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>generate_test</b>(const vector&lt; string &gt; &amp;_test_filenames, const vector&lt; string &gt; &amp;_input_parameter_names, const vector&lt; string &gt; &amp;_output_parameter_names) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_input_parameter_names</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_normalize_avgs</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_normalize_maxs</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_normalize_mins</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_normalize_std_devs</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_normalize_type</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_inputs</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_outputs</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_series</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_output_parameter_names</b>() const (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_set</b>(int32_t i) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>help_message</b>() (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_parameter_names</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>load_time_series</b>() (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_avg_std_dev</b>() (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_avg_std_dev</b>(const map&lt; string, double &gt; &amp;_normalize_avgs, const map&lt; string, double &gt; &amp;_normalize_std_devs, const map&lt; string, double &gt; &amp;_normalize_mins, const map&lt; string, double &gt; &amp;_normalize_maxs) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_avgs</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_maxs</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_min_max</b>() (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_min_max</b>(const map&lt; string, double &gt; &amp;_normalize_mins, const map&lt; string, double &gt; &amp;_normalize_maxs) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_mins</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_std_devs</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_type</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_parameter_names</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>parse_parameters_string</b>(const vector&lt; string &gt; &amp;p) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_test_indexes</b>(const vector&lt; int &gt; &amp;_test_indexes) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_training_indexes</b>(const vector&lt; int &gt; &amp;_training_indexes) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>shift_parameter_names</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>split_all</b>(int number_slices) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>split_series</b>(int series, int number_slices) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>test_indexes</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>time_series</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>TimeSeriesSets</b>() (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>training_indexes</b> (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_time_series_sets</b>(string base_filename) (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~TimeSeriesSets</b>() (defined in <a class="el" href="class_time_series_sets.html">TimeSeriesSets</a>)</td><td class="entry"><a class="el" href="class_time_series_sets.html">TimeSeriesSets</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_time_series_sets.html b/docs/html/class_time_series_sets.html
new file mode 100644
index 00000000..c54a64dd
--- /dev/null
+++ b/docs/html/class_time_series_sets.html
@@ -0,0 +1,232 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: TimeSeriesSets Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
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+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_time_series_sets-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">TimeSeriesSets Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ae456b414586be2e6c2f634b2583f8a1e"><td class="memItemLeft" align="right" valign="top"><a id="ae456b414586be2e6c2f634b2583f8a1e"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_min_max</b> ()</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_min_max</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt; &amp;_normalize_mins, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt; &amp;_normalize_maxs)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_avg_std_dev</b> ()</td></tr>
+<tr class="separator:a1ff984d07a5531d1781832d57376fd05"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_avg_std_dev</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt; &amp;_normalize_avgs, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt; &amp;_normalize_std_devs, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt; &amp;_normalize_mins, const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt; &amp;_normalize_maxs)</td></tr>
+<tr class="separator:ad2acd60c0e4b224fcddd42f982f2e7f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>split_series</b> (int series, int number_slices)</td></tr>
+<tr class="separator:aa405fa31b79ed889be2fc42fd847703f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>split_all</b> (int number_slices)</td></tr>
+<tr class="separator:a25e64a6ebe99d155af40fa3c4827eee0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>write_time_series_sets</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> base_filename)</td></tr>
+<tr class="separator:a617cece27b5f4d4cea003b66fb64b2fd"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_time_series_sets.html#a5c8ac2daba0424ae774be8c9bee789b6">export_time_series</a> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int &gt; &amp;series_indexes, int time_offset, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;inputs, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;outputs)</td></tr>
+<tr class="memdesc:a5c8ac2daba0424ae774be8c9bee789b6"><td class="mdescLeft">&#160;</td><td class="mdescRight">the series argument is a vector of indexes of the time series that was initially loaded that are to be exported <br /></td></tr>
+<tr class="separator:a5c8ac2daba0424ae774be8c9bee789b6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_time_series_sets.html#af7b9f9319c330cb6af8475ce1c2aa545">export_training_series</a> (int time_offset, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;inputs, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;outputs)</td></tr>
+<tr class="memdesc:af7b9f9319c330cb6af8475ce1c2aa545"><td class="mdescLeft">&#160;</td><td class="mdescRight">This exports the time series marked as training series by the training_indexes vector. <br /></td></tr>
+<tr class="separator:af7b9f9319c330cb6af8475ce1c2aa545"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_time_series_sets.html#a45b61a73ae84cdafce66a10dd9930534">export_test_series</a> (int time_offset, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;inputs, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &gt; &amp;outputs)</td></tr>
+<tr class="memdesc:a45b61a73ae84cdafce66a10dd9930534"><td class="mdescLeft">&#160;</td><td class="mdescRight">This exports the time series marked as test series by the test_indexes vector. <br /></td></tr>
+<tr class="separator:a45b61a73ae84cdafce66a10dd9930534"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_time_series_sets.html#a2ee946c4092fa81d3dc2cbf4c65b3388">export_series_by_name</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field_name, <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &gt; &amp;exported_series)</td></tr>
+<tr class="memdesc:a2ee946c4092fa81d3dc2cbf4c65b3388"><td class="mdescLeft">&#160;</td><td class="mdescRight">This exports from all the loaded time series a particular column. <br /></td></tr>
+<tr class="separator:a2ee946c4092fa81d3dc2cbf4c65b3388"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af076b335af2db7a42b0f7c08048254be"><td class="memItemLeft" align="right" valign="top"><a id="af076b335af2db7a42b0f7c08048254be"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>denormalize</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> field_name, double value)</td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><b>get_normalize_type</b> () const</td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_normalize_mins</b> () const</td></tr>
+<tr class="separator:a7937d3649074b8a4cddc89f647435109"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_normalize_maxs</b> () const</td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_normalize_avgs</b> () const</td></tr>
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+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/map.html">map</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>get_normalize_std_devs</b> () const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_series</b> () const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_inputs</b> () const</td></tr>
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+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_outputs</b> () const</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>set_training_indexes</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; int &gt; &amp;_training_indexes)</td></tr>
+<tr class="separator:ad5fea4bb76a25f3ea308624ac0e3ca44"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
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+static void&#160;</td><td class="memItemRight" valign="bottom"><b>help_message</b> ()</td></tr>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>parse_parameters_string</b> (const <a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> &gt; &amp;p)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>load_time_series</b> ()</td></tr>
+<tr class="separator:aad6705cac0f8b4dc4b862aa5f24aa04d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
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+<li>time_series/time_series.cxx</li>
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+double&#160;</td><td class="memItemRight" valign="bottom"><b>_max</b></td></tr>
+<tr class="separator:ac4bbd19641ba52bb54a38733f078c816"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af52d65a6a19b69bca42d11b513463d60"><td class="memItemLeft" align="right" valign="top"><a id="af52d65a6a19b69bca42d11b513463d60"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>values</b></td></tr>
+<tr class="separator:af52d65a6a19b69bca42d11b513463d60"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>mpi/<a class="el" href="tracker_8hxx_source.html">tracker.hxx</a></li>
+<li>mpi/tracker.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/class_u_g_r_n_n___node-members.html b/docs/html/class_u_g_r_n_n___node-members.html
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+++ b/docs/html/class_u_g_r_n_n___node-members.html
@@ -0,0 +1,151 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
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+</table>
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+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
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+var searchBox = new SearchBox("searchBox", "search",false,'Search');
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+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">UGRNN_Node Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>backward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>c</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>c_bias</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ch</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>copy</b>() const (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>cw</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_c_bias</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_ch</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_cw</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_g_bias</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_gh</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_gw</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>d_h_prev</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>d_input</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>depth</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>enabled</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>equals</b>(RNN_Node_Interface *other) const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_fired</b>(int time, double error) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>error_fired</b>(int32_t time, double error)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>error_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>forward_reachable</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>g</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>g_bias</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_depth</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gradient</b>(string gradient_name) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gradients</b>(vector&lt; double &gt; &amp;gradients) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_innovation_number</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_layer_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_node_type</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_number_weights</b>() const (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_total_inputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_total_outputs</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_weights</b>(vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_weights</b>(uint32_t &amp;offset, vector&lt; double &gt; &amp;parameters) const (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>gh</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>gw</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_kaiming</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double range) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_lamarckian</b>(minstd_rand0 &amp;generator, NormalDistribution &amp;normal_distribution, double mu, double sigma) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>initialize_uniform_random</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>initialize_xavier</b>(minstd_rand0 &amp;generator, uniform_real_distribution&lt; double &gt; &amp;rng1_1, double range) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>innovation_number</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_fired</b>(int time, double incoming_output) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>input_fired</b>(int32_t time, double incoming_output)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>input_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>inputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_enabled</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_reachable</b>() const (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>layer_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ld_c</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ld_g</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>node_type</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_fired</b>(int time, double delta) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>output_fired</b>(int32_t time, double delta)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_values</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>outputs_fired</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>parameter_name</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>print_gradient</b>(string gradient_name) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset</b>(int _series_length) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset</b>(int32_t _series_length)=0 (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Edge</b> (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>RNN_Node_Interface</b>(int32_t _innovation_number, int32_t _layer_type, double _depth, string _parameter_name) (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>series_length</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_weights</b>(const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weights</b>(uint32_t &amp;offset, const vector&lt; double &gt; &amp;parameters) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>total_inputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>total_outputs</b> (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>try_update_deltas</b>(int time) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>UGRNN_Node</b>(int _innovation_number, int _type, double _depth) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_to_stream</b>(ostream &amp;out) (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>~RNN_Node_Interface</b>() (defined in <a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>)</td><td class="entry"><a class="el" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~UGRNN_Node</b>() (defined in <a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a>)</td><td class="entry"><a class="el" href="class_u_g_r_n_n___node.html">UGRNN_Node</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: UGRNN_Node Class Reference</title>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="class_u_g_r_n_n___node-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">UGRNN_Node Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for UGRNN_Node:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_u_g_r_n_n___node.png" usemap="#UGRNN_5FNode_map" alt=""/>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="memitem:a3764b899849150018680e31a6e9bcf0e"><td class="memItemLeft" align="right" valign="top"><a id="a3764b899849150018680e31a6e9bcf0e"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>UGRNN_Node</b> (int _innovation_number, int _type, double _depth)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_lamarckian</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double mu, double sigma)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_xavier</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution</a>&lt; double &gt; &amp;rng1_1, double range)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>initialize_kaiming</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="el" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, double range)</td></tr>
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+</table>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>rnn/<a class="el" href="ugrnn__node_8hxx_source.html">ugrnn_node.hxx</a></li>
+<li>rnn/ugrnn_node.cxx</li>
+</ul>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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diff --git a/docs/html/class_word_series-members.html b/docs/html/class_word_series-members.html
new file mode 100644
index 00000000..2c59a88f
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
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+<!-- Generated by Doxygen 1.8.17 -->
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+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
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+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">WordSeries Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_word_series.html">WordSeries</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_value</b>(double value) (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="class_word_series.html#a3422e982c01b71612924ac5f1f0d2181">average</a></td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>calculate_statistics</b>() (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>copy</b>() (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>copy_values</b>(vector&lt; double &gt; &amp;series) (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>cut</b>(int32_t start, int32_t stop) (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_average</b>() const (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_correlation</b>(const WordSeries *other, int32_t lag) const (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_max</b>() const (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_max_change</b>() const (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_min</b>() const (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_min_change</b>() const (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_number_values</b>() const (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_std_dev</b>() const (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_value</b>(int i) (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_variance</b>() const (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_word_series.html#ab61bb7ef53fe10c4ef2077ad70700c25">max</a></td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>max_change</b> (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_word_series.html#a93302deb50a92c6aa6f7b2d8da29fee5">min</a></td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>min_change</b> (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_word_series.html#ad40f74a195876908084a743b66c7b208">name</a></td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>normalize_avg_std_dev</b>(double avg, double std_dev, double norm_max) (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>normalize_min_max</b>(double min, double max) (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>print_statistics</b>() (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_word_series.html#a6902b4c4b6bb2f865a59e4c5e27d7f18">std_dev</a></td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_word_series.html#aed7840684ce132999a2d34a7e26dcd97">values</a></td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_word_series.html#ad1b8dc0e4f367bf0aa4a46ddb114f8c0">variance</a></td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr><td class="entry"><a class="el" href="class_word_series.html#a0db2200d32c40a69f28f55457d05afac">vocab_size</a></td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>WordSeries</b>() (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>WordSeries</b>(string _name) (defined in <a class="el" href="class_word_series.html">WordSeries</a>)</td><td class="entry"><a class="el" href="class_word_series.html">WordSeries</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: WordSeries Class Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+ </tbody>
+</table>
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+        name="MSearchResults" id="MSearchResults">
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="class_word_series-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">WordSeries Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ad0632eb627c4275f0c01877084a265d3"><td class="memItemLeft" align="right" valign="top"><a id="ad0632eb627c4275f0c01877084a265d3"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>WordSeries</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> _name)</td></tr>
+<tr class="separator:ad0632eb627c4275f0c01877084a265d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac40abcdb2bf29aac109e4663590697cd"><td class="memItemLeft" align="right" valign="top"><a id="ac40abcdb2bf29aac109e4663590697cd"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>add_value</b> (double value)</td></tr>
+<tr class="separator:ac40abcdb2bf29aac109e4663590697cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6b53ae1e5b35716ad4f905b1eb6d665c"><td class="memItemLeft" align="right" valign="top"><a id="a6b53ae1e5b35716ad4f905b1eb6d665c"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_value</b> (int i)</td></tr>
+<tr class="separator:a6b53ae1e5b35716ad4f905b1eb6d665c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af40e1cae4cecb85c62a95f96443ebd5a"><td class="memItemLeft" align="right" valign="top"><a id="af40e1cae4cecb85c62a95f96443ebd5a"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>calculate_statistics</b> ()</td></tr>
+<tr class="separator:af40e1cae4cecb85c62a95f96443ebd5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af0641d8c6f711ebd3de17507b67997d1"><td class="memItemLeft" align="right" valign="top"><a id="af0641d8c6f711ebd3de17507b67997d1"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>print_statistics</b> ()</td></tr>
+<tr class="separator:af0641d8c6f711ebd3de17507b67997d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a828c95b1330e9327a207949560885af1"><td class="memItemLeft" align="right" valign="top"><a id="a828c95b1330e9327a207949560885af1"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>get_number_values</b> () const</td></tr>
+<tr class="separator:a828c95b1330e9327a207949560885af1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a741c2546aa8b032570813b5c6ee137a8"><td class="memItemLeft" align="right" valign="top"><a id="a741c2546aa8b032570813b5c6ee137a8"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_min</b> () const</td></tr>
+<tr class="separator:a741c2546aa8b032570813b5c6ee137a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abe65b98aea1f4f78e4e55fe8ce6735e3"><td class="memItemLeft" align="right" valign="top"><a id="abe65b98aea1f4f78e4e55fe8ce6735e3"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_average</b> () const</td></tr>
+<tr class="separator:abe65b98aea1f4f78e4e55fe8ce6735e3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac00878158175877d31997cd5cd271198"><td class="memItemLeft" align="right" valign="top"><a id="ac00878158175877d31997cd5cd271198"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_max</b> () const</td></tr>
+<tr class="separator:ac00878158175877d31997cd5cd271198"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a73c60c775afb633cd34064860dbd6d4a"><td class="memItemLeft" align="right" valign="top"><a id="a73c60c775afb633cd34064860dbd6d4a"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_std_dev</b> () const</td></tr>
+<tr class="separator:a73c60c775afb633cd34064860dbd6d4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a175cd6233bb96f88779a22223a819d2d"><td class="memItemLeft" align="right" valign="top"><a id="a175cd6233bb96f88779a22223a819d2d"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_variance</b> () const</td></tr>
+<tr class="separator:a175cd6233bb96f88779a22223a819d2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8d1197bee0719710feb3a4cc0558c7bb"><td class="memItemLeft" align="right" valign="top"><a id="a8d1197bee0719710feb3a4cc0558c7bb"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_min_change</b> () const</td></tr>
+<tr class="separator:a8d1197bee0719710feb3a4cc0558c7bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae0c1de06176025d5f8d5460391f5bbcf"><td class="memItemLeft" align="right" valign="top"><a id="ae0c1de06176025d5f8d5460391f5bbcf"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_max_change</b> () const</td></tr>
+<tr class="separator:ae0c1de06176025d5f8d5460391f5bbcf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2019e6699fc8eb8b18439bdb38a18ed6"><td class="memItemLeft" align="right" valign="top"><a id="a2019e6699fc8eb8b18439bdb38a18ed6"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_min_max</b> (double <a class="el" href="class_word_series.html#a93302deb50a92c6aa6f7b2d8da29fee5">min</a>, double <a class="el" href="class_word_series.html#ab61bb7ef53fe10c4ef2077ad70700c25">max</a>)</td></tr>
+<tr class="separator:a2019e6699fc8eb8b18439bdb38a18ed6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab45a95958471a4255ad7ecf990ab2cd3"><td class="memItemLeft" align="right" valign="top"><a id="ab45a95958471a4255ad7ecf990ab2cd3"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>normalize_avg_std_dev</b> (double avg, double <a class="el" href="class_word_series.html#a6902b4c4b6bb2f865a59e4c5e27d7f18">std_dev</a>, double norm_max)</td></tr>
+<tr class="separator:ab45a95958471a4255ad7ecf990ab2cd3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a89582ef3e5cd7a9fb39ac37e629b0287"><td class="memItemLeft" align="right" valign="top"><a id="a89582ef3e5cd7a9fb39ac37e629b0287"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>cut</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> start, <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> stop)</td></tr>
+<tr class="separator:a89582ef3e5cd7a9fb39ac37e629b0287"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae940ee5743cacb86076aac66f6010fa8"><td class="memItemLeft" align="right" valign="top"><a id="ae940ee5743cacb86076aac66f6010fa8"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>get_correlation</b> (const <a class="el" href="class_word_series.html">WordSeries</a> *other, <a class="elRef" href="http://en.cppreference.com/w/cpp/types/integer.html">int32_t</a> lag) const</td></tr>
+<tr class="separator:ae940ee5743cacb86076aac66f6010fa8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a39fe4ada8a08d95968e4b4e00665a78b"><td class="memItemLeft" align="right" valign="top"><a id="a39fe4ada8a08d95968e4b4e00665a78b"></a>
+<a class="el" href="class_word_series.html">WordSeries</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>copy</b> ()</td></tr>
+<tr class="separator:a39fe4ada8a08d95968e4b4e00665a78b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aab0949df22d0b2caad5ee6885a196180"><td class="memItemLeft" align="right" valign="top"><a id="aab0949df22d0b2caad5ee6885a196180"></a>
+void&#160;</td><td class="memItemRight" valign="bottom"><b>copy_values</b> (<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt; &amp;series)</td></tr>
+<tr class="separator:aab0949df22d0b2caad5ee6885a196180"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:ad40f74a195876908084a743b66c7b208"><td class="memItemLeft" align="right" valign="top"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_word_series.html#ad40f74a195876908084a743b66c7b208">name</a></td></tr>
+<tr class="memdesc:ad40f74a195876908084a743b66c7b208"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the string name in the data.  <a href="class_word_series.html#ad40f74a195876908084a743b66c7b208">More...</a><br /></td></tr>
+<tr class="separator:ad40f74a195876908084a743b66c7b208"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0db2200d32c40a69f28f55457d05afac"><td class="memItemLeft" align="right" valign="top"><a id="a0db2200d32c40a69f28f55457d05afac"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_word_series.html#a0db2200d32c40a69f28f55457d05afac">vocab_size</a></td></tr>
+<tr class="memdesc:a0db2200d32c40a69f28f55457d05afac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the number of the unique strings in the dataset. <br /></td></tr>
+<tr class="separator:a0db2200d32c40a69f28f55457d05afac"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a93302deb50a92c6aa6f7b2d8da29fee5"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_word_series.html#a93302deb50a92c6aa6f7b2d8da29fee5">min</a></td></tr>
+<tr class="memdesc:a93302deb50a92c6aa6f7b2d8da29fee5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the minimum of the word series in a particular string.  <a href="class_word_series.html#a93302deb50a92c6aa6f7b2d8da29fee5">More...</a><br /></td></tr>
+<tr class="separator:a93302deb50a92c6aa6f7b2d8da29fee5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3422e982c01b71612924ac5f1f0d2181"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_word_series.html#a3422e982c01b71612924ac5f1f0d2181">average</a></td></tr>
+<tr class="memdesc:a3422e982c01b71612924ac5f1f0d2181"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the average of the word series in a particular string.  <a href="class_word_series.html#a3422e982c01b71612924ac5f1f0d2181">More...</a><br /></td></tr>
+<tr class="separator:a3422e982c01b71612924ac5f1f0d2181"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab61bb7ef53fe10c4ef2077ad70700c25"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_word_series.html#ab61bb7ef53fe10c4ef2077ad70700c25">max</a></td></tr>
+<tr class="memdesc:ab61bb7ef53fe10c4ef2077ad70700c25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the maximum of the word series in a particular string.  <a href="class_word_series.html#ab61bb7ef53fe10c4ef2077ad70700c25">More...</a><br /></td></tr>
+<tr class="separator:ab61bb7ef53fe10c4ef2077ad70700c25"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6902b4c4b6bb2f865a59e4c5e27d7f18"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_word_series.html#a6902b4c4b6bb2f865a59e4c5e27d7f18">std_dev</a></td></tr>
+<tr class="memdesc:a6902b4c4b6bb2f865a59e4c5e27d7f18"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the std.  <a href="class_word_series.html#a6902b4c4b6bb2f865a59e4c5e27d7f18">More...</a><br /></td></tr>
+<tr class="separator:a6902b4c4b6bb2f865a59e4c5e27d7f18"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad1b8dc0e4f367bf0aa4a46ddb114f8c0"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_word_series.html#ad1b8dc0e4f367bf0aa4a46ddb114f8c0">variance</a></td></tr>
+<tr class="memdesc:ad1b8dc0e4f367bf0aa4a46ddb114f8c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the variance of the word series in a particular string.  <a href="class_word_series.html#ad1b8dc0e4f367bf0aa4a46ddb114f8c0">More...</a><br /></td></tr>
+<tr class="separator:ad1b8dc0e4f367bf0aa4a46ddb114f8c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a56eeff54503c725b99284c6524f704a0"><td class="memItemLeft" align="right" valign="top"><a id="a56eeff54503c725b99284c6524f704a0"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>min_change</b></td></tr>
+<tr class="separator:a56eeff54503c725b99284c6524f704a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9aee1f87534f0fff5c814afb122b69d0"><td class="memItemLeft" align="right" valign="top"><a id="a9aee1f87534f0fff5c814afb122b69d0"></a>
+double&#160;</td><td class="memItemRight" valign="bottom"><b>max_change</b></td></tr>
+<tr class="separator:a9aee1f87534f0fff5c814afb122b69d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aed7840684ce132999a2d34a7e26dcd97"><td class="memItemLeft" align="right" valign="top"><a id="aed7840684ce132999a2d34a7e26dcd97"></a>
+<a class="elRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_word_series.html#aed7840684ce132999a2d34a7e26dcd97">values</a></td></tr>
+<tr class="memdesc:aed7840684ce132999a2d34a7e26dcd97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Storers the values in the word series respective of the time in a particular string. <br /></td></tr>
+<tr class="separator:aed7840684ce132999a2d34a7e26dcd97"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a3422e982c01b71612924ac5f1f0d2181"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3422e982c01b71612924ac5f1f0d2181">&#9670;&nbsp;</a></span>average</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double WordSeries::average</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies the average of the word series in a particular string. </p>
+<p>This tells about the words which are used the most. </p>
+
+</div>
+</div>
+<a id="ab61bb7ef53fe10c4ef2077ad70700c25"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab61bb7ef53fe10c4ef2077ad70700c25">&#9670;&nbsp;</a></span>max</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double WordSeries::max</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies the maximum of the word series in a particular string. </p>
+<p>This could be 0 or 1 </p>
+
+</div>
+</div>
+<a id="a93302deb50a92c6aa6f7b2d8da29fee5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a93302deb50a92c6aa6f7b2d8da29fee5">&#9670;&nbsp;</a></span>min</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double WordSeries::min</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies the minimum of the word series in a particular string. </p>
+<p>This could be 0 or 1 </p>
+
+</div>
+</div>
+<a id="ad40f74a195876908084a743b66c7b208"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad40f74a195876908084a743b66c7b208">&#9670;&nbsp;</a></span>name</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="elRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">string</a> WordSeries::name</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies the string name in the data. </p>
+<p>All the unique strings in the datasets will have its each word series. </p>
+
+</div>
+</div>
+<a id="a6902b4c4b6bb2f865a59e4c5e27d7f18"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6902b4c4b6bb2f865a59e4c5e27d7f18">&#9670;&nbsp;</a></span>std_dev</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double WordSeries::std_dev</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies the std. </p>
+<p>deviation of the word series in a particular string. </p>
+
+</div>
+</div>
+<a id="ad1b8dc0e4f367bf0aa4a46ddb114f8c0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad1b8dc0e4f367bf0aa4a46ddb114f8c0">&#9670;&nbsp;</a></span>variance</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double WordSeries::variance</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Specifies the variance of the word series in a particular string. </p>
+<p>This tells about the closeness of a word in the dataset. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>word_series/<a class="el" href="word__series_8hxx_source.html">word_series.hxx</a></li>
+<li>word_series/word_series.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
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+<div id="MSearchSelectWindow"
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+<!-- iframe showing the search results (closed by default) -->
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+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div id="nav-path" class="navpath">
+  <ul>
+<li class="navelem"><b>config_to_arg</b></li><li class="navelem"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">ConfigToArg</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">config_to_arg.ConfigToArg Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html#a0423918c5ac9ce0372cc30c72ae803aa">__init__</a>(self, config, name, filename, config_options={}, defaults={}, types={}, constraints={})</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>config_options</b> (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>constraints</b> (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>optional_config_option_defaults</b> (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>to_args</b>(self) (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>types</b> (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/classconfig__to__arg_1_1_config_to_arg.html b/docs/html/classconfig__to__arg_1_1_config_to_arg.html
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+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: config_to_arg.ConfigToArg Class Reference</title>
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+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
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+
+<div id="nav-path" class="navpath">
+  <ul>
+<li class="navelem"><b>config_to_arg</b></li><li class="navelem"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">ConfigToArg</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="classconfig__to__arg_1_1_config_to_arg-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">config_to_arg.ConfigToArg Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="dynheader">
+Inheritance diagram for config_to_arg.ConfigToArg:</div>
+<div class="dyncontent">
+ <div class="center">
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+  </map>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a0423918c5ac9ce0372cc30c72ae803aa"><td class="memItemLeft" align="right" valign="top">def&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html#a0423918c5ac9ce0372cc30c72ae803aa">__init__</a> (self, config, name, filename, config_options={}, defaults={}, types={}, constraints={})</td></tr>
+<tr class="separator:a0423918c5ac9ce0372cc30c72ae803aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a24c44867bb2c637387ca4cb508b79613"><td class="memItemLeft" align="right" valign="top"><a id="a24c44867bb2c637387ca4cb508b79613"></a>
+def&#160;</td><td class="memItemRight" valign="bottom"><b>to_args</b> (self)</td></tr>
+<tr class="separator:a24c44867bb2c637387ca4cb508b79613"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a8cf8295fec60995e7354ebb38fd4c96b"><td class="memItemLeft" align="right" valign="top"><a id="a8cf8295fec60995e7354ebb38fd4c96b"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>config_options</b></td></tr>
+<tr class="separator:a8cf8295fec60995e7354ebb38fd4c96b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a085f7121d8a5c5125a28b2131d7ad580"><td class="memItemLeft" align="right" valign="top"><a id="a085f7121d8a5c5125a28b2131d7ad580"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>optional_config_option_defaults</b></td></tr>
+<tr class="separator:a085f7121d8a5c5125a28b2131d7ad580"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab2d0b438f05da5d9bdaa6f0ee7f184f4"><td class="memItemLeft" align="right" valign="top"><a id="ab2d0b438f05da5d9bdaa6f0ee7f184f4"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>types</b></td></tr>
+<tr class="separator:ab2d0b438f05da5d9bdaa6f0ee7f184f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab4f530603e6948c4b86e69f7e01112a1"><td class="memItemLeft" align="right" valign="top"><a id="ab4f530603e6948c4b86e69f7e01112a1"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>constraints</b></td></tr>
+<tr class="separator:ab4f530603e6948c4b86e69f7e01112a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><pre class="fragment">A easily configurable class meant to be used for different configuration sections.
+</pre> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a0423918c5ac9ce0372cc30c72ae803aa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0423918c5ac9ce0372cc30c72ae803aa">&#9670;&nbsp;</a></span>__init__()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">def config_to_arg.ConfigToArg.__init__ </td>
+          <td>(</td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>self</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>config</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>name</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>filename</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>config_options</em> = <code>{}</code>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>defaults</em> = <code>{}</code>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>types</em> = <code>{}</code>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">&#160;</td>
+          <td class="paramname"><em>constraints</em> = <code>{}</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<pre class="fragment">:param config a dictionary from the parsed config file
+:param name the name of this configuration section (e.g. examm.&lt;section_name&gt;)
+:param filename name / path of the configuration file
+
+:param config_options a map from config option name to a lambda used to turn
+the parameter into a list of command line arguments. The lambda takes self and the
+value of the parameter as arguments.
+
+:param defaults a map from config option name to a lambda that
+returns the default value of a parameter. If a config option does not appear
+in this map then it is not optional. If the value of an option is None,
+it won't be added to the argument list / it will remain unset.
+
+:param types maps config option name to a set of the valid types for that config option.
+
+:param constraints maps config option name to a tuple, the first element is a lambda that
+takes the config option value as an argument and returns True if it meets all constraints.
+The second value of the tuple is a short description of the constraints.
+</pre> 
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>cli/config_to_arg.py</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Index</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
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+<div class="qindex"><a class="qindex" href="#letter_c">c</a>&#160;|&#160;<a class="qindex" href="#letter_d">d</a>&#160;|&#160;<a class="qindex" href="#letter_e">e</a>&#160;|&#160;<a class="qindex" href="#letter_g">g</a>&#160;|&#160;<a class="qindex" href="#letter_h">h</a>&#160;|&#160;<a class="qindex" href="#letter_i">i</a>&#160;|&#160;<a class="qindex" href="#letter_l">l</a>&#160;|&#160;<a class="qindex" href="#letter_m">m</a>&#160;|&#160;<a class="qindex" href="#letter_n">n</a>&#160;|&#160;<a class="qindex" href="#letter_p">p</a>&#160;|&#160;<a class="qindex" href="#letter_r">r</a>&#160;|&#160;<a class="qindex" href="#letter_s">s</a>&#160;|&#160;<a class="qindex" href="#letter_t">t</a>&#160;|&#160;<a class="qindex" href="#letter_u">u</a>&#160;|&#160;<a class="qindex" href="#letter_w">w</a></div>
+<table class="classindex">
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<li class="navelem"><b>examm_task</b></li><li class="navelem"><a class="el" href="classexamm__task_1_1_examm_task.html">ExammTask</a></li>  </ul>
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+  <div class="headertitle">
+<div class="title">examm_task.ExammTask Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>__init__</b>(self, toml_object, file_path, run_number) (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"></td></tr>
+  <tr><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html#a0423918c5ac9ce0372cc30c72ae803aa">config_to_arg::ConfigToArg.__init__</a>(self, config, name, filename, config_options={}, defaults={}, types={}, constraints={})</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ALL_NODE_TYPES</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>all_strings</b>(self, some_list) (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>CONFIG_OPTIONS</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>config_options</b> (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>constraints</b> (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>CONSTRAINTS</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>DEFAULTS</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>examm_config</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>filename</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>glob_to_all</b>(paths) (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>optional_config_option_defaults</b> (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>output_directory</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>parallelism</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>to_args</b>(self) (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>to_command</b>(self) (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>TYPES</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>types</b> (defined in <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a>)</td><td class="entry"><a class="el" href="classconfig__to__arg_1_1_config_to_arg.html">config_to_arg.ConfigToArg</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>version</b> (defined in <a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a>)</td><td class="entry"><a class="el" href="classexamm__task_1_1_examm_task.html">examm_task.ExammTask</a></td><td class="entry"></td></tr>
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+<li class="navelem"><b>examm_task</b></li><li class="navelem"><a class="el" href="classexamm__task_1_1_examm_task.html">ExammTask</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#pub-static-attribs">Static Public Attributes</a> &#124;
+<a href="classexamm__task_1_1_examm_task-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">examm_task.ExammTask Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
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+Inheritance diagram for examm_task.ExammTask:</div>
+<div class="dyncontent">
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+  <img src="classexamm__task_1_1_examm_task.png" usemap="#examm_5Ftask.ExammTask_map" alt=""/>
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+Public Member Functions</h2></td></tr>
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+def&#160;</td><td class="memItemRight" valign="bottom"><b>to_command</b> (self)</td></tr>
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+def&#160;</td><td class="memItemRight" valign="bottom"><b>all_strings</b> (self, some_list)</td></tr>
+<tr class="separator:a2757a4f0790e4fd677a4b61afebe0943"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+def&#160;</td><td class="memItemRight" valign="bottom"><b>to_args</b> (self)</td></tr>
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+&#160;</td><td class="memItemRight" valign="bottom"><b>examm_config</b></td></tr>
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+<tr class="memitem:a752f28628fd4411a18f94d6c74a1b6de"><td class="memItemLeft" align="right" valign="top"><a id="a752f28628fd4411a18f94d6c74a1b6de"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>filename</b></td></tr>
+<tr class="separator:a752f28628fd4411a18f94d6c74a1b6de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a36260f518ff0be1f547733e8627beb23"><td class="memItemLeft" align="right" valign="top"><a id="a36260f518ff0be1f547733e8627beb23"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>version</b></td></tr>
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+&#160;</td><td class="memItemRight" valign="bottom"><b>parallelism</b></td></tr>
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+<tr class="memitem:a8cf8295fec60995e7354ebb38fd4c96b inherit pub_attribs_classconfig__to__arg_1_1_config_to_arg"><td class="memItemLeft" align="right" valign="top"><a id="a8cf8295fec60995e7354ebb38fd4c96b"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>config_options</b></td></tr>
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+&#160;</td><td class="memItemRight" valign="bottom"><b>types</b></td></tr>
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+&#160;</td><td class="memItemRight" valign="bottom"><b>constraints</b></td></tr>
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+</table><table class="memberdecls">
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+Static Public Attributes</h2></td></tr>
+<tr class="memitem:af01348dcf6873ad50c8ede43c20ac720"><td class="memItemLeft" align="right" valign="top"><a id="af01348dcf6873ad50c8ede43c20ac720"></a>
+list&#160;</td><td class="memItemRight" valign="bottom"><b>ALL_NODE_TYPES</b> = [ 'simple', 'UGRNN', 'MGU', 'GRU', 'delta', 'LSTM' , 'ENARC' ]</td></tr>
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+<tr class="memitem:aae6eeef6249cb3398c603e22259a8615"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>CONFIG_OPTIONS</b></td></tr>
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+<tr class="memitem:a6a8084b4265f660640f91d59eea44835"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>DEFAULTS</b></td></tr>
+<tr class="separator:a6a8084b4265f660640f91d59eea44835"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a94966dcee15238e180cede3c68ac7712"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>TYPES</b></td></tr>
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+<tr class="memitem:a22398504cffcc3e032690b7c55e21556"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>CONSTRAINTS</b></td></tr>
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+</table>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="aae6eeef6249cb3398c603e22259a8615"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aae6eeef6249cb3398c603e22259a8615">&#9670;&nbsp;</a></span>CONFIG_OPTIONS</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">dictionary examm_task.ExammTask.CONFIG_OPTIONS</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
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+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&quot;training_files&quot;</span>:       <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--training_filenames&#39;</span>] + ExammTask.glob_to_all(x),</div>
+<div class="line">            <span class="stringliteral">&quot;test_files&quot;</span>:           <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--test_filenames&#39;</span>] + ExammTask.glob_to_all(x),</div>
+<div class="line">            <span class="stringliteral">&quot;time_offset&quot;</span>:          <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--time_offset&#39;</span>, str(x)],</div>
+<div class="line">            <span class="stringliteral">&quot;input_parameters&quot;</span>:     <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--input_parameter_names&#39;</span>] + list(map(str, x)),</div>
+<div class="line">            <span class="stringliteral">&quot;output_parameters&quot;</span>:    <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--output_parameter_names&#39;</span>] + list(map(str, x)),</div>
+<div class="line">            <span class="stringliteral">&quot;n_islands&quot;</span>:            <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--number_islands&#39;</span>, str(x)],</div>
+<div class="line">            <span class="stringliteral">&quot;population_size&quot;</span>:      <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--population_size&#39;</span>, str(x)],</div>
+<div class="line">            <span class="stringliteral">&quot;max_genomes&quot;</span>:          <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--max_genomes&#39;</span>, str(x)],</div>
+<div class="line">            <span class="stringliteral">&quot;bp_iterations&quot;</span>:        <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--bp_iterations&#39;</span>, str(x)],</div>
+<div class="line">            <span class="stringliteral">&quot;output_directory&quot;</span>:     <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--output_directory&#39;</span>, str(x)],</div>
+<div class="line">            <span class="stringliteral">&quot;node_types&quot;</span>:           <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--possible_node_types&#39;</span>] + list(map(str, x)),</div>
+<div class="line">            <span class="stringliteral">&quot;rec&quot;</span>:                  <span class="keyword">lambda</span> self, x: RecArgs(x, self.filename).to_args(),</div>
+<div class="line">            <span class="stringliteral">&quot;island_purging&quot;</span>:       <span class="keyword">lambda</span> self, x: IslandPurgingArgs(x, self.filename).to_args()</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="a22398504cffcc3e032690b7c55e21556"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a22398504cffcc3e032690b7c55e21556">&#9670;&nbsp;</a></span>CONSTRAINTS</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">dictionary examm_task.ExammTask.CONSTRAINTS</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&quot;training_files&quot;</span>:       (<span class="keyword">lambda</span> self: self.all_strings(self.training_files),</div>
+<div class="line">                                    <span class="stringliteral">&quot;must be a list of strings&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;test_files&quot;</span>:           (<span class="keyword">lambda</span> self: self.all_strings(self.test_files),</div>
+<div class="line">                                    <span class="stringliteral">&quot;must be a list of strings&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;time_offset&quot;</span>:          (<span class="keyword">lambda</span> self: self.time_offset &gt; 0, <span class="stringliteral">&quot;must a positive integer&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;input_parameters&quot;</span>:     (<span class="keyword">lambda</span> self: self.all_strings(self.input_parameters),</div>
+<div class="line">                                    <span class="stringliteral">&quot;must be a list of strings&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;output_parameters&quot;</span>:    (<span class="keyword">lambda</span> self: self.all_strings(self.output_parameters),</div>
+<div class="line">                                    <span class="stringliteral">&quot;must be a list of strings&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;n_islands&quot;</span>:            (<span class="keyword">lambda</span> self: self.n_islands &gt; 0, <span class="stringliteral">&quot;must be a positive integer&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;population_size&quot;</span>:      (<span class="keyword">lambda</span> self: self.population_size &gt; 0, <span class="stringliteral">&quot;must be a positive integer&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;max_genomes&quot;</span>:          (<span class="keyword">lambda</span> self: self.max_genomes &gt; 0, <span class="stringliteral">&quot;must be a positive integer&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;bp_iterations&quot;</span>:        (<span class="keyword">lambda</span> self: self.bp_iterations &gt;= 0, <span class="stringliteral">&quot;must be a non-negative integer&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;output_directory&quot;</span>:     (<span class="keyword">lambda</span> self: <span class="keyword">True</span>, <span class="stringliteral">&quot;must be a valid path&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;node_types&quot;</span>:           (<span class="keyword">lambda</span> self: self.all_strings(self.node_types) \</div>
+<div class="line">                                                <span class="keywordflow">and</span> set(self.node_types).issubset(set(ExammTask.ALL_NODE_TYPES)),</div>
+<div class="line">                                    <span class="stringliteral">&quot;must be a subset of &quot;</span> + str(ALL_NODE_TYPES)),</div>
+<div class="line">            <span class="comment"># Subsections should be of type dict</span></div>
+<div class="line">            <span class="stringliteral">&quot;rec&quot;</span>:                  (<span class="keyword">lambda</span> self: <span class="keyword">True</span>, <span class="stringliteral">&quot;&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&quot;island_purging&quot;</span>:       (<span class="keyword">lambda</span> self: <span class="keyword">True</span>, <span class="stringliteral">&quot;&quot;</span>)</div>
+<div class="line"> </div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="a6a8084b4265f660640f91d59eea44835"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6a8084b4265f660640f91d59eea44835">&#9670;&nbsp;</a></span>DEFAULTS</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">dictionary examm_task.ExammTask.DEFAULTS</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&quot;node_types&quot;</span>: <span class="keyword">lambda</span>: ExammTask.ALL_NODE_TYPES,</div>
+<div class="line">            <span class="stringliteral">&quot;rec&quot;</span>: <span class="keyword">lambda</span>: dict(),</div>
+<div class="line">            <span class="stringliteral">&quot;island_purging&quot;</span>: <span class="keyword">lambda</span>: dict()</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="a94966dcee15238e180cede3c68ac7712"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a94966dcee15238e180cede3c68ac7712">&#9670;&nbsp;</a></span>TYPES</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">dictionary examm_task.ExammTask.TYPES</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&quot;training_files&quot;</span>:       {list},</div>
+<div class="line">            <span class="stringliteral">&quot;test_files&quot;</span>:           {list},</div>
+<div class="line">            <span class="stringliteral">&quot;time_offset&quot;</span>:          {int},</div>
+<div class="line">            <span class="stringliteral">&quot;input_parameters&quot;</span>:     {list},</div>
+<div class="line">            <span class="stringliteral">&quot;output_parameters&quot;</span>:    {list},</div>
+<div class="line">            <span class="stringliteral">&quot;n_islands&quot;</span>:            {int},</div>
+<div class="line">            <span class="stringliteral">&quot;population_size&quot;</span>:      {int},</div>
+<div class="line">            <span class="stringliteral">&quot;max_genomes&quot;</span>:          {int},</div>
+<div class="line">            <span class="stringliteral">&quot;bp_iterations&quot;</span>:        {int},</div>
+<div class="line">            <span class="stringliteral">&quot;output_directory&quot;</span>:     {str},</div>
+<div class="line">            <span class="stringliteral">&quot;node_types&quot;</span>:           {list},</div>
+<div class="line">            <span class="comment"># Subsections should be of type dict</span></div>
+<div class="line">            <span class="stringliteral">&quot;rec&quot;</span>:                  {dict},</div>
+<div class="line">            <span class="stringliteral">&quot;island_purging&quot;</span>:       {dict}</div>
+<div class="line"> </div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>cli/examm_task.py</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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diff --git a/docs/html/classisland__purging__args_1_1_island_purging_args-members.html b/docs/html/classisland__purging__args_1_1_island_purging_args-members.html
new file mode 100644
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div id="nav-path" class="navpath">
+  <ul>
+<li class="navelem"><b>island_purging_args</b></li><li class="navelem"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">IslandPurgingArgs</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">island_purging_args.IslandPurgingArgs Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>__init__</b>(self, rec, filename) (defined in <a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a>)</td><td class="entry"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>c2a</b> (defined in <a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a>)</td><td class="entry"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>CONFIG_OPTIONS</b> (defined in <a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a>)</td><td class="entry"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>CONSTRAINTS</b> (defined in <a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a>)</td><td class="entry"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>DEFAULTS</b> (defined in <a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a>)</td><td class="entry"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>SELECTION_METHOD_MAP</b> (defined in <a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a>)</td><td class="entry"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>to_args</b>(self) (defined in <a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a>)</td><td class="entry"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>TYPES</b> (defined in <a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a>)</td><td class="entry"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">island_purging_args.IslandPurgingArgs</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/classisland__purging__args_1_1_island_purging_args.html b/docs/html/classisland__purging__args_1_1_island_purging_args.html
new file mode 100644
index 00000000..0799a42b
--- /dev/null
+++ b/docs/html/classisland__purging__args_1_1_island_purging_args.html
@@ -0,0 +1,249 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: island_purging_args.IslandPurgingArgs Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
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+<script type="text/javascript" src="menu.js"></script>
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div id="nav-path" class="navpath">
+  <ul>
+<li class="navelem"><b>island_purging_args</b></li><li class="navelem"><a class="el" href="classisland__purging__args_1_1_island_purging_args.html">IslandPurgingArgs</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#pub-static-attribs">Static Public Attributes</a> &#124;
+<a href="classisland__purging__args_1_1_island_purging_args-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">island_purging_args.IslandPurgingArgs Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a4b9638c5cda5ea696b73d0bac5b7b646"><td class="memItemLeft" align="right" valign="top"><a id="a4b9638c5cda5ea696b73d0bac5b7b646"></a>
+def&#160;</td><td class="memItemRight" valign="bottom"><b>__init__</b> (self, rec, filename)</td></tr>
+<tr class="separator:a4b9638c5cda5ea696b73d0bac5b7b646"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+def&#160;</td><td class="memItemRight" valign="bottom"><b>to_args</b> (self)</td></tr>
+<tr class="separator:a989d7b5c2711f982f060ea0b60a7393a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a120817e8732b70bd03a800994496540e"><td class="memItemLeft" align="right" valign="top"><a id="a120817e8732b70bd03a800994496540e"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>c2a</b></td></tr>
+<tr class="separator:a120817e8732b70bd03a800994496540e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-attribs"></a>
+Static Public Attributes</h2></td></tr>
+<tr class="memitem:a3777a6ef4fac9e1e48234b5f76169614"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>SELECTION_METHOD_MAP</b></td></tr>
+<tr class="separator:a3777a6ef4fac9e1e48234b5f76169614"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac0408cda21769d62b29c0b07080ea541"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>CONFIG_OPTIONS</b></td></tr>
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+<tr class="memitem:af4b7da43c0947f3b0964a07c0df81748"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>DEFAULTS</b></td></tr>
+<tr class="separator:af4b7da43c0947f3b0964a07c0df81748"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ababdf6b88eef9038a42ca6c03c8337ab"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>TYPES</b></td></tr>
+<tr class="separator:ababdf6b88eef9038a42ca6c03c8337ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a688ff9b68d60391090be6f49ee90cc27"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>CONSTRAINTS</b></td></tr>
+<tr class="separator:a688ff9b68d60391090be6f49ee90cc27"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ac0408cda21769d62b29c0b07080ea541"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac0408cda21769d62b29c0b07080ea541">&#9670;&nbsp;</a></span>CONFIG_OPTIONS</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">dictionary island_purging_args.IslandPurgingArgs.CONFIG_OPTIONS</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&#39;selection_method&#39;</span>: <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--check_on_island_method&#39;</span>, IslandPurgingArgs.SELECTION_METHOD_MAP[x]],</div>
+<div class="line">            <span class="stringliteral">&#39;period&#39;</span>:           <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--num_genomes_check_worst_fit&#39;</span>, str(x)],</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="a688ff9b68d60391090be6f49ee90cc27"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a688ff9b68d60391090be6f49ee90cc27">&#9670;&nbsp;</a></span>CONSTRAINTS</h2>
+
+<div class="memitem">
+<div class="memproto">
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+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">dictionary island_purging_args.IslandPurgingArgs.CONSTRAINTS</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&#39;period&#39;</span>: (<span class="keyword">lambda</span> self: self.period &gt; 0,</div>
+<div class="line">                    <span class="stringliteral">&quot;must be a positive integer&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&#39;selection_method&#39;</span>: (<span class="keyword">lambda</span> self: self.selection_method <span class="keywordflow">in</span> {<span class="stringliteral">&#39;worst_best&#39;</span>},</div>
+<div class="line">                    <span class="stringliteral">&quot;must be unset or &#39;worst_best&#39;&quot;</span>)</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="af4b7da43c0947f3b0964a07c0df81748"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af4b7da43c0947f3b0964a07c0df81748">&#9670;&nbsp;</a></span>DEFAULTS</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">dictionary island_purging_args.IslandPurgingArgs.DEFAULTS</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&#39;selection_method&#39;</span>: <span class="keyword">lambda</span>: <span class="keywordtype">None</span>,</div>
+<div class="line">            <span class="stringliteral">&#39;period&#39;</span>: <span class="keyword">lambda</span>: <span class="keywordtype">None</span>,</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="a3777a6ef4fac9e1e48234b5f76169614"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3777a6ef4fac9e1e48234b5f76169614">&#9670;&nbsp;</a></span>SELECTION_METHOD_MAP</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">dictionary island_purging_args.IslandPurgingArgs.SELECTION_METHOD_MAP</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&#39;worst_best&#39;</span>: <span class="stringliteral">&#39;clear_island_with_worst_best_genome&#39;</span></div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="ababdf6b88eef9038a42ca6c03c8337ab"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ababdf6b88eef9038a42ca6c03c8337ab">&#9670;&nbsp;</a></span>TYPES</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">dictionary island_purging_args.IslandPurgingArgs.TYPES</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&#39;period&#39;</span>: {int},</div>
+<div class="line">            <span class="stringliteral">&#39;selection_method&#39;</span>: {str}</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>cli/island_purging_args.py</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">min_max_heap&lt; T &gt; Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classmin__max__heap.html#a42e3ecf3ab992eddf731bba3cdd5ce9d">cbegin</a>()</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+  <tr class="even"><td class="entry"><a class="el" href="classmin__max__heap.html#a7bc015a4db5cc82870e23732e0b01c60">clear</a>()</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>const_iterator</b> typedef (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>delete_element</b>(uint32_t z) (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>empty</b>() const (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>find_max</b>() const (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>find_min</b>() const (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>heap</b> (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_on_min_level</b>(uint32_t z) (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>left_child</b>(uint32_t z) (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>less_than</b> (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>parent</b>(uint32_t z) (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>pop</b>() (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+  <tr class="even"><td class="entry"><a class="el" href="classmin__max__heap.html#a962166c243c1a1278b41b59d397a5189">reserve</a>(size_t n)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>right_child</b>(uint32_t z) (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>size</b>() const (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>trickle_down</b>(uint32_t z) (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>trickle_down_inner</b>(const uint32_t z) (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>trickle_up</b>(uint32_t z) (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>trickle_up_inner</b>(uint32_t z) (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>~min_max_heap</b>() (defined in <a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a>)</td><td class="entry"><a class="el" href="classmin__max__heap.html">min_max_heap&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: min_max_heap&lt; T &gt; Class Template Reference</title>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-types">Private Types</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classmin__max__heap-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">min_max_heap&lt; T &gt; Class Template Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This implementation of a <a class="el" href="classmin__max__heap.html" title="This implementation of a min_max_heap was basically ripped from here: https://github....">min_max_heap</a> was basically ripped from here: <a href="https://github.com/itsjohncs/minmaxheap-cpp/blob/master/MinMaxHeap.hpp">https://github.com/itsjohncs/minmaxheap-cpp/blob/master/MinMaxHeap.hpp</a>.  
+ <a href="classmin__max__heap.html#details">More...</a></p>
+
+<p><code>#include &lt;<a class="el" href="min__max__heap_8hxx_source.html">min_max_heap.hxx</a>&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="memitem:a8150a4c81beed0795529f923cdc57751"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmin__max__heap.html#a8150a4c81beed0795529f923cdc57751">min_max_heap</a> (<a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">std::function</a>&lt; bool(const T &amp;, const T &amp;)&gt; _less_than, uint32_t size_hint=-1)</td></tr>
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+<tr class="separator:a8150a4c81beed0795529f923cdc57751"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>empty</b> () const</td></tr>
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+<tr class="separator:a9184c94f7909bc98b6097cad8a49f4bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:aa80b1443a03ec6c6f63382b8d93a4b11"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a42e3ecf3ab992eddf731bba3cdd5ce9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:afeaa2d61f64081af3645044292dac605"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmin__max__heap.html#a962166c243c1a1278b41b59d397a5189">reserve</a> (size_t n)</td></tr>
+<tr class="memdesc:a962166c243c1a1278b41b59d397a5189"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ensures that the underlying vector can hold at least n elements. <br /></td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classmin__max__heap.html#a7bc015a4db5cc82870e23732e0b01c60">clear</a> ()</td></tr>
+<tr class="memdesc:a7bc015a4db5cc82870e23732e0b01c60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deletes every element in this heap. <br /></td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>trickle_up</b> (uint32_t z)</td></tr>
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+void&#160;</td><td class="memItemRight" valign="bottom"><b>trickle_down</b> (uint32_t z)</td></tr>
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+static uint32_t&#160;</td><td class="memItemRight" valign="bottom"><b>parent</b> (uint32_t z)</td></tr>
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+static uint32_t&#160;</td><td class="memItemRight" valign="bottom"><b>right_child</b> (uint32_t z)</td></tr>
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+static bool&#160;</td><td class="memItemRight" valign="bottom"><b>is_on_max_level</b> (uint32_t z)</td></tr>
+<tr class="separator:a3f588656c909df8ecfd3686b1f6dcd91"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:adfbc5da06a1e984ab32754342df4d46f"><td class="memItemLeft" align="right" valign="top"><a id="adfbc5da06a1e984ab32754342df4d46f"></a>
+vector&lt; T &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>heap</b></td></tr>
+<tr class="separator:adfbc5da06a1e984ab32754342df4d46f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aff5a71e4120a281f3b470fefe0eae260"><td class="memItemLeft" align="right" valign="top"><a id="aff5a71e4120a281f3b470fefe0eae260"></a>
+function&lt; bool(const T &amp;, const T &amp;)&gt;&#160;</td><td class="memItemRight" valign="bottom"><b>less_than</b></td></tr>
+<tr class="separator:aff5a71e4120a281f3b470fefe0eae260"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><h3>template&lt;class T&gt;<br />
+class min_max_heap&lt; T &gt;</h3>
+
+<p>This implementation of a <a class="el" href="classmin__max__heap.html" title="This implementation of a min_max_heap was basically ripped from here: https://github....">min_max_heap</a> was basically ripped from here: <a href="https://github.com/itsjohncs/minmaxheap-cpp/blob/master/MinMaxHeap.hpp">https://github.com/itsjohncs/minmaxheap-cpp/blob/master/MinMaxHeap.hpp</a>. </p>
+<p>Along with this for reference <a href="https://en.wikipedia.org/wiki/Min-max_heap">https://en.wikipedia.org/wiki/Min-max_heap</a></p>
+<p>The first layer (e.g. the layer which only contains the root node) contains the maximum element. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a8150a4c81beed0795529f923cdc57751"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8150a4c81beed0795529f923cdc57751">&#9670;&nbsp;</a></span>min_max_heap()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;class T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classmin__max__heap.html">min_max_heap</a>&lt; T &gt;::<a class="el" href="classmin__max__heap.html">min_max_heap</a> </td>
+          <td>(</td>
+          <td class="paramtype"><a class="elRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">std::function</a>&lt; bool(const T &amp;, const T &amp;)&gt;&#160;</td>
+          <td class="paramname"><em>_less_than</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">uint32_t&#160;</td>
+          <td class="paramname"><em>size_hint</em> = <code>-1</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Creates a new <a class="el" href="classmin__max__heap.html" title="This implementation of a min_max_heap was basically ripped from here: https://github....">min_max_heap</a>. </p>
+<p>The only parameter is a function that will compare two elements, and determine if the first is less than the second. This could probably be done in a better way with generics but I'm not confident in doing so. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a42e3ecf3ab992eddf731bba3cdd5ce9d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a42e3ecf3ab992eddf731bba3cdd5ce9d">&#9670;&nbsp;</a></span>cbegin()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;class T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const_iterator <a class="el" href="classmin__max__heap.html">min_max_heap</a>&lt; T &gt;::cbegin </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
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+</table>
+</div><div class="memdoc">
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+<p>returns the const_iterator to the beginning of the underlying vector. </p>
+<p>There is no non-const iterator because the ordering of the data structure could potentially be changed. </p>
+
+</div>
+</div>
+<a id="afeaa2d61f64081af3645044292dac605"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afeaa2d61f64081af3645044292dac605">&#9670;&nbsp;</a></span>cend()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;class T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const_iterator <a class="el" href="classmin__max__heap.html">min_max_heap</a>&lt; T &gt;::cend </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>returns the const_iterator pointing past the end of the underlying vector (i.e. </p>
+<p>this is an invalid reference). There is no non-const end iterator because the ordering of the data structure must be preserved. </p>
+
+</div>
+</div>
+<a id="a9184c94f7909bc98b6097cad8a49f4bc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9184c94f7909bc98b6097cad8a49f4bc">&#9670;&nbsp;</a></span>pop_max()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;class T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T <a class="el" href="classmin__max__heap.html">min_max_heap</a>&lt; T &gt;::pop_max </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns and removes the maximum item in this min-max heap. </p>
+<p>If the heap is emoty it will throw an underflow_error </p>
+
+</div>
+</div>
+<a id="aa80b1443a03ec6c6f63382b8d93a4b11"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa80b1443a03ec6c6f63382b8d93a4b11">&#9670;&nbsp;</a></span>pop_min()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;class T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T <a class="el" href="classmin__max__heap.html">min_max_heap</a>&lt; T &gt;::pop_min </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns and removes the minimum item in this min-max heap. </p>
+<p>If the heap is empty, it will throw an underflow_error </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>rnn/<a class="el" href="min__max__heap_8hxx_source.html">min_max_heap.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
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+</div>
+</div><!-- top -->
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+  <div class="headertitle">
+<div class="title">rec_args.RecArgs Member List</div>  </div>
+</div><!--header-->
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+
+<p>This is the complete list of members for <a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>__init__</b>(self, rec, filename) (defined in <a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a>)</td><td class="entry"><a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>c2a</b> (defined in <a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a>)</td><td class="entry"><a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>CONFIG_OPTIONS</b> (defined in <a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a>)</td><td class="entry"><a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>CONSTRAINTS</b> (defined in <a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a>)</td><td class="entry"><a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>DEFAULTS</b> (defined in <a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a>)</td><td class="entry"><a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>to_args</b>(self) (defined in <a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a>)</td><td class="entry"><a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>TYPES</b> (defined in <a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a>)</td><td class="entry"><a class="el" href="classrec__args_1_1_rec_args.html">rec_args.RecArgs</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
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+  <ul>
+<li class="navelem"><b>rec_args</b></li><li class="navelem"><a class="el" href="classrec__args_1_1_rec_args.html">RecArgs</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#pub-static-attribs">Static Public Attributes</a> &#124;
+<a href="classrec__args_1_1_rec_args-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">rec_args.RecArgs Class Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ae258306971ce88fe84711f2b45b25ce2"><td class="memItemLeft" align="right" valign="top"><a id="ae258306971ce88fe84711f2b45b25ce2"></a>
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+<tr class="separator:ae258306971ce88fe84711f2b45b25ce2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adb2ba8e6bea883cedfe9734738288c67"><td class="memItemLeft" align="right" valign="top"><a id="adb2ba8e6bea883cedfe9734738288c67"></a>
+def&#160;</td><td class="memItemRight" valign="bottom"><b>to_args</b> (self)</td></tr>
+<tr class="separator:adb2ba8e6bea883cedfe9734738288c67"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:ac2af995aff9e83dcc76135264391505f"><td class="memItemLeft" align="right" valign="top"><a id="ac2af995aff9e83dcc76135264391505f"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>c2a</b></td></tr>
+<tr class="separator:ac2af995aff9e83dcc76135264391505f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-attribs"></a>
+Static Public Attributes</h2></td></tr>
+<tr class="memitem:a91b75b05d716ac2324963ebc39901b23"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>CONFIG_OPTIONS</b></td></tr>
+<tr class="separator:a91b75b05d716ac2324963ebc39901b23"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a57018418c93e6e6ed69550fb4dbfbd3f"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>DEFAULTS</b></td></tr>
+<tr class="separator:a57018418c93e6e6ed69550fb4dbfbd3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a446093f75b5a05a2d5968868600288e0"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>TYPES</b></td></tr>
+<tr class="separator:a446093f75b5a05a2d5968868600288e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2146df883b85dde5a5385fb586a5e193"><td class="memItemLeft" align="right" valign="top">dictionary&#160;</td><td class="memItemRight" valign="bottom"><b>CONSTRAINTS</b></td></tr>
+<tr class="separator:a2146df883b85dde5a5385fb586a5e193"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a91b75b05d716ac2324963ebc39901b23"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a91b75b05d716ac2324963ebc39901b23">&#9670;&nbsp;</a></span>CONFIG_OPTIONS</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">dictionary rec_args.RecArgs.CONFIG_OPTIONS</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&#39;min&#39;</span>: <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--rec_delay_min&#39;</span>, str(x)],</div>
+<div class="line">            <span class="stringliteral">&#39;max&#39;</span>: <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--rec_delay_max&#39;</span>, str(x)],</div>
+<div class="line">            <span class="stringliteral">&#39;dist&#39;</span>: <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--rec_sampling_distribution&#39;</span>, str(x)],</div>
+<div class="line">            <span class="stringliteral">&#39;population&#39;</span>: <span class="keyword">lambda</span> self, x: [<span class="stringliteral">&#39;--rec_sampling_population&#39;</span>, str(x)],</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="a2146df883b85dde5a5385fb586a5e193"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2146df883b85dde5a5385fb586a5e193">&#9670;&nbsp;</a></span>CONSTRAINTS</h2>
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+<div class="memitem">
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+      <table class="memname">
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+          <td class="memname">dictionary rec_args.RecArgs.CONSTRAINTS</td>
+        </tr>
+      </table>
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+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&#39;min&#39;</span>: (<span class="keyword">lambda</span> self: self.min &lt; self.max <span class="keywordflow">and</span> self.min &gt;= 1,</div>
+<div class="line">                    <span class="stringliteral">&quot;must be less than examm.rec.max and at least 1&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&#39;max&#39;</span>: (<span class="keyword">lambda</span> self: self.max &gt; self.min <span class="keywordflow">and</span> self.max &gt;= 2,</div>
+<div class="line">                    <span class="stringliteral">&quot;must be greater than examm.rec.min and at least 2&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&#39;dist&#39;</span>: (<span class="keyword">lambda</span> self: self.dist <span class="keywordflow">in</span> {<span class="stringliteral">&#39;uniform&#39;</span>, <span class="stringliteral">&#39;histogram&#39;</span>, <span class="stringliteral">&#39;normal&#39;</span>},</div>
+<div class="line">                    <span class="stringliteral">&quot;must be one of &#39;uniform&#39;, &#39;histogram&#39;, or &#39;normal&#39;&quot;</span>),</div>
+<div class="line">            <span class="stringliteral">&#39;population&#39;</span>: (<span class="keyword">lambda</span> self: self.population <span class="keywordflow">in</span> {<span class="stringliteral">&#39;global&#39;</span>, <span class="stringliteral">&#39;island&#39;</span>},</div>
+<div class="line">                    <span class="stringliteral">&quot;must be either &#39;global&#39; or &#39;island&#39;&quot;</span>)</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="a57018418c93e6e6ed69550fb4dbfbd3f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a57018418c93e6e6ed69550fb4dbfbd3f">&#9670;&nbsp;</a></span>DEFAULTS</h2>
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+<div class="memitem">
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+      <table class="memname">
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+          <td class="memname">dictionary rec_args.RecArgs.DEFAULTS</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&#39;min&#39;</span>: <span class="keyword">lambda</span>: 1,</div>
+<div class="line">            <span class="stringliteral">&#39;max&#39;</span>: <span class="keyword">lambda</span>: 50,</div>
+<div class="line">            <span class="stringliteral">&#39;dist&#39;</span>: <span class="keyword">lambda</span>: <span class="stringliteral">&#39;uniform&#39;</span>,</div>
+<div class="line">            <span class="stringliteral">&#39;population&#39;</span>: <span class="keyword">lambda</span>: <span class="stringliteral">&#39;global&#39;</span>,</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="a446093f75b5a05a2d5968868600288e0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a446093f75b5a05a2d5968868600288e0">&#9670;&nbsp;</a></span>TYPES</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">dictionary rec_args.RecArgs.TYPES</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">=  {</div>
+<div class="line">            <span class="stringliteral">&#39;min&#39;</span>: {int},</div>
+<div class="line">            <span class="stringliteral">&#39;max&#39;</span>: {int},</div>
+<div class="line">            <span class="stringliteral">&#39;population&#39;</span>: {str},</div>
+<div class="line">            <span class="stringliteral">&#39;dist&#39;</span>: {str},</div>
+<div class="line">    }</div>
+</div><!-- fragment -->
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>cli/rec_args.py</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
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+  <ul>
+<li class="navelem"><a class="el" href="dir_377bcd34c68cb9858f831db88dc7fd3f.html">cnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">cnn_edge.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef CNN_EDGE_H</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define CNN_EDGE_H</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ofstream.html">std::ofstream</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">std::ifstream</a>;</div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160; </div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::cout</a>;</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::cerr</a>;</div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/manip/endl.html">std::endl</a>;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a>;</div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_istream.html">std::istream</a>;</div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160; </div>
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+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160; </div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
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+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
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+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="preprocessor">#include &quot;image_tools/image_set.hxx&quot;</span></div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="preprocessor">#include &quot;common/random.hxx&quot;</span></div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160; </div>
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+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;        <span class="keywordtype">int</span> exact_id;</div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;        <span class="keywordtype">int</span> genome_id;</div>
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+<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;        <span class="keywordflow">if</span> (n1-&gt;get_input_node()-&gt;get_depth() &lt; n2-&gt;get_input_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;            <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160; </div>
+<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;        } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (n1-&gt;get_input_node()-&gt;get_depth() == n2-&gt;get_input_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;            <span class="comment">//make sure the order of the edges is *always* the same</span></div>
+<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;            <span class="comment">//going through the edges in different orders may effect the output</span></div>
+<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;            <span class="comment">//of backpropagation</span></div>
+<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;            <span class="keywordflow">if</span> (n1-&gt;get_innovation_number() &lt; n2-&gt;get_innovation_number()) {</div>
+<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;                <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;            } <span class="keywordflow">else</span> {</div>
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+<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;        }</div>
+<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;    }   </div>
+<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;};</div>
+<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160; </div>
+<div class="line"><a name="l00210"></a><span class="lineno"><a class="line" href="structsort___c_n_n___edges__by__output__depth.html">  210</a></span>&#160;<span class="keyword">struct </span><a class="code" href="structsort___c_n_n___edges__by__output__depth.html">sort_CNN_Edges_by_output_depth</a> {</div>
+<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;    <span class="keywordtype">bool</span> operator()(<a class="code" href="class_c_n_n___edge.html">CNN_Edge</a> *n1, <a class="code" href="class_c_n_n___edge.html">CNN_Edge</a> *n2) {</div>
+<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;        <span class="keywordflow">if</span> (n1-&gt;get_output_node()-&gt;get_depth() &lt; n2-&gt;get_output_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;            <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160; </div>
+<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;        } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (n1-&gt;get_output_node()-&gt;get_depth() == n2-&gt;get_output_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;            <span class="comment">//make sure the order of the edges is *always* the same</span></div>
+<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;            <span class="comment">//going through the edges in different orders may effect the output</span></div>
+<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;            <span class="comment">//of backpropagation</span></div>
+<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;            <span class="keywordflow">if</span> (n1-&gt;get_innovation_number() &lt; n2-&gt;get_innovation_number()) {</div>
+<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;                <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;            } <span class="keywordflow">else</span> {</div>
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+<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;            }</div>
+<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160; </div>
+<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;        } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;            <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;        }</div>
+<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;    }   </div>
+<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;};</div>
+<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160; </div>
+<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160; </div>
+<div class="line"><a name="l00232"></a><span class="lineno"><a class="line" href="structsort___c_n_n___edges__by__innovation.html">  232</a></span>&#160;<span class="keyword">struct </span><a class="code" href="structsort___c_n_n___edges__by__innovation.html">sort_CNN_Edges_by_innovation</a> {</div>
+<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;    <span class="keywordtype">bool</span> operator()(<a class="code" href="class_c_n_n___edge.html">CNN_Edge</a> *n1, <a class="code" href="class_c_n_n___edge.html">CNN_Edge</a> *n2) {</div>
+<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;        <span class="keywordflow">return</span> n1-&gt;get_innovation_number() &lt; n2-&gt;get_innovation_number();</div>
+<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;    }   </div>
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+<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160; </div>
+<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;<span class="preprocessor">#endif</span></div>
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+<div class="ttc" id="astructsort___c_n_n___edges__by__depth_html"><div class="ttname"><a href="structsort___c_n_n___edges__by__depth.html">sort_CNN_Edges_by_depth</a></div><div class="ttdef"><b>Definition:</b> cnn_edge.hxx:189</div></div>
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+<div class="ttc" id="aclass_c_n_n___edge_html"><div class="ttname"><a href="class_c_n_n___edge.html">CNN_Edge</a></div><div class="ttdef"><b>Definition:</b> cnn_edge.hxx:32</div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
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+<div class="ttc" id="astructsort___c_n_n___edges__by__innovation_html"><div class="ttname"><a href="structsort___c_n_n___edges__by__innovation.html">sort_CNN_Edges_by_innovation</a></div><div class="ttdef"><b>Definition:</b> cnn_edge.hxx:232</div></div>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<li class="navelem"><a class="el" href="dir_377bcd34c68cb9858f831db88dc7fd3f.html">cnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">cnn_genome.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef CNN_GENOME_H</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define CNN_GENOME_H</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">std::map</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160; </div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &quot;image_tools/image_set.hxx&quot;</span></div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="preprocessor">#include &quot;image_tools/large_image_set.hxx&quot;</span></div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &quot;cnn_node.hxx&quot;</span></div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &quot;cnn_edge.hxx&quot;</span></div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="preprocessor">#include &quot;common/random.hxx&quot;</span></div>
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+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="preprocessor">#define SANITY_CHECK_BEFORE_INSERT 0</span></div>
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+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">//mysql can&#39;t handl the max float value for some reason</span></div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="preprocessor">#define EXACT_MAX_FLOAT 10000000</span></div>
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+<div class="line"><a name="l00025"></a><span class="lineno"><a class="line" href="class_c_n_n___genome.html">   25</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_c_n_n___genome.html">CNN_Genome</a> {</div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;        <span class="keywordtype">string</span> version_str;</div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;        <span class="keywordtype">int</span> exact_id;</div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;        <span class="keywordtype">int</span> genome_id;</div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160; </div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;CNN_Node*&gt;</a> nodes;</div>
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+<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;        <span class="keywordtype">void</span> stochastic_backpropagation(<span class="keyword">const</span> <a class="code" href="class_images_interface.html">ImagesInterface</a> &amp;training_images, <span class="keyword">const</span> <a class="code" href="class_images_interface.html">ImagesInterface</a> &amp;validation_images);</div>
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+<div class="ttc" id="aclass_c_n_n___edge_html"><div class="ttname"><a href="class_c_n_n___edge.html">CNN_Edge</a></div><div class="ttdef"><b>Definition:</b> cnn_edge.hxx:32</div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
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+<div class="ttc" id="aclass_c_n_n___genome_html"><div class="ttname"><a href="class_c_n_n___genome.html">CNN_Genome</a></div><div class="ttdef"><b>Definition:</b> cnn_genome.hxx:25</div></div>
+<div class="ttc" id="aclass_c_n_n___node_html"><div class="ttname"><a href="class_c_n_n___node.html">CNN_Node</a></div><div class="ttdef"><b>Definition:</b> cnn_node.hxx:49</div></div>
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+<div class="ttc" id="aclass_images_interface_html"><div class="ttname"><a href="class_images_interface.html">ImagesInterface</a></div><div class="ttdef"><b>Definition:</b> image_set_interface.hxx:28</div></div>
+<div class="ttc" id="astructsort__genomes__by__validation__error_html"><div class="ttname"><a href="structsort__genomes__by__validation__error.html">sort_genomes_by_validation_error</a></div><div class="ttdef"><b>Definition:</b> cnn_genome.hxx:252</div></div>
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+  <ul>
+<li class="navelem"><a class="el" href="dir_377bcd34c68cb9858f831db88dc7fd3f.html">cnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">cnn_node.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef CNN_NEAT_NODE_H</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define CNN_NEAT_NODE_H</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ofstream.html">std::ofstream</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">std::ifstream</a>;</div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160; </div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::cout</a>;</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::cerr</a>;</div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/manip/endl.html">std::endl</a>;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a>;</div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_istream.html">std::istream</a>;</div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160; </div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160; </div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="preprocessor">#include &lt;sstream&gt;</span></div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_istringstream.html">std::istringstream</a>;</div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160; </div>
+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160; </div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160; </div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160; </div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="preprocessor">#include &quot;image_tools/image_set.hxx&quot;</span></div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160; </div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="preprocessor">#ifdef _MYSQL_</span></div>
+<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="preprocessor">#include &quot;common/db_conn.hxx&quot;</span></div>
+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160; </div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#include &quot;common/random.hxx&quot;</span></div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160; </div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor">#define RELU_MIN 0</span></div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#define RELU_MIN_LEAK 0.005</span></div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160; </div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#define RELU_MAX 5.5</span></div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#define RELU_MAX_LEAK 0.00</span></div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160; </div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor">#define INPUT_NODE 0</span></div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="preprocessor">#define HIDDEN_NODE 1</span></div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;<span class="preprocessor">#define OUTPUT_NODE 2</span></div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="preprocessor">#define SOFTMAX_NODE 3</span></div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160; </div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160; </div>
+<div class="line"><a name="l00049"></a><span class="lineno"><a class="line" href="class_c_n_n___node.html">   49</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_c_n_n___node.html">CNN_Node</a> {</div>
+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;        <span class="keywordtype">int</span> node_id;</div>
+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;        <span class="keywordtype">int</span> exact_id;</div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;        <span class="keywordtype">int</span> genome_id;</div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160; </div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;        <span class="keywordtype">int</span> innovation_number;</div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;        <span class="keywordtype">float</span> depth;</div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160; </div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;        <span class="keywordtype">int</span> batch_size, size_y, size_x;</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;        <span class="keywordtype">int</span> total_size;</div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160; </div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;        <span class="keywordtype">int</span> weight_count;</div>
+<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160; </div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;        <span class="keywordtype">int</span> type;</div>
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+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;        <span class="keywordtype">int</span> total_inputs;</div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;        <span class="keywordtype">int</span> inputs_fired;</div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160; </div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        <span class="keywordtype">int</span> total_outputs;</div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;        <span class="keywordtype">int</span> outputs_fired;</div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160; </div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        <span class="keywordtype">bool</span> forward_visited;</div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;        <span class="keywordtype">bool</span> reverse_visited;</div>
+<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;        <span class="keywordtype">bool</span> needs_initialization;</div>
+<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160; </div>
+<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;        <span class="keywordtype">bool</span> disabled;</div>
+<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160; </div>
+<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;        <span class="keywordtype">float</span> gamma;</div>
+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;        <span class="keywordtype">float</span> best_gamma;</div>
+<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;        <span class="keywordtype">float</span> previous_velocity_gamma;</div>
+<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160; </div>
+<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;        <span class="keywordtype">float</span> beta;</div>
+<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;        <span class="keywordtype">float</span> best_beta;</div>
+<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;        <span class="keywordtype">float</span> previous_velocity_beta;</div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160; </div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;        <span class="keywordtype">float</span> batch_mean;</div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;        <span class="keywordtype">float</span> batch_variance; <span class="comment">//sigma squared</span></div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;        <span class="keywordtype">float</span> batch_std_dev; <span class="comment">//sqrt(batch_variance + epsilon);</span></div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;        <span class="keywordtype">float</span> inverse_variance;</div>
+<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160; </div>
+<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;        <span class="keywordtype">float</span> running_mean;</div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;        <span class="keywordtype">float</span> best_running_mean;</div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        <span class="keywordtype">float</span> running_variance;</div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;        <span class="keywordtype">float</span> best_running_variance;</div>
+<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160; </div>
+<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;        <span class="comment">//batch number x size_y x size_x</span></div>
+<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;        <span class="keywordtype">float</span> *values_out;</div>
+<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;        <span class="keywordtype">float</span> *errors_out;</div>
+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <span class="keywordtype">float</span> *relu_gradients;</div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        <span class="keywordtype">float</span> *pool_gradients;</div>
+<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160; </div>
+<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;        <span class="keywordtype">float</span> *values_in;</div>
+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;        <span class="keywordtype">float</span> *errors_in;</div>
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+<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;        <span class="keywordtype">float</span> input_fired_time;</div>
+<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;        <span class="keywordtype">float</span> output_fired_time;</div>
+<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160; </div>
+<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160; </div>
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+<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;        <a class="code" href="class_c_n_n___node.html">CNN_Node</a>();</div>
+<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;        ~<a class="code" href="class_c_n_n___node.html">CNN_Node</a>();</div>
+<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160; </div>
+<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;        <a class="code" href="class_c_n_n___node.html">CNN_Node</a>(<span class="keywordtype">int</span> _innovation_number, <span class="keywordtype">float</span> _depth, <span class="keywordtype">int</span> _batch_size, <span class="keywordtype">int</span> _input_size_x, <span class="keywordtype">int</span> _input_size_y, <span class="keywordtype">int</span> type);</div>
+<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160; </div>
+<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;        <a class="code" href="class_c_n_n___node.html">CNN_Node</a>* copy() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160; </div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;<span class="preprocessor">#ifdef _MYSQL_</span></div>
+<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;        <a class="code" href="class_c_n_n___node.html">CNN_Node</a>(<span class="keywordtype">int</span> node_id);</div>
+<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;        <span class="keywordtype">void</span> export_to_database(<span class="keywordtype">int</span> exact_id, <span class="keywordtype">int</span> genome_id);</div>
+<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160; </div>
+<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;        <span class="keywordtype">int</span> get_node_id() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160; </div>
+<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;        <span class="keywordtype">bool</span> needs_init() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;        <span class="keywordtype">int</span> get_batch_size() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;        <span class="keywordtype">int</span> get_size_x() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;        <span class="keywordtype">int</span> get_size_y() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;        <span class="keywordtype">bool</span> vectors_correct() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160; </div>
+<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;        <span class="keywordtype">void</span> initialize();</div>
+<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160; </div>
+<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;        <span class="keywordtype">void</span> reset_velocities();</div>
+<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160; </div>
+<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;        <span class="keywordtype">void</span> reset_weight_count();</div>
+<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;        <span class="keywordtype">void</span> add_weight_count(<span class="keywordtype">int</span> _weight_count);</div>
+<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;        <span class="keywordtype">int</span> get_weight_count() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160; </div>
+<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;        <span class="keywordtype">int</span> get_innovation_number() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160; </div>
+<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;        <span class="keywordtype">float</span> get_depth() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160; </div>
+<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;        <span class="keywordtype">bool</span> is_fixed() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;        <span class="keywordtype">bool</span> is_hidden() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;        <span class="keywordtype">bool</span> is_input() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;        <span class="keywordtype">bool</span> is_output() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;        <span class="keywordtype">bool</span> is_softmax() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160; </div>
+<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;        <span class="keywordtype">bool</span> is_reachable() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;        <span class="keywordtype">bool</span> is_forward_visited() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;        <span class="keywordtype">bool</span> is_reverse_visited() <span class="keyword">const</span>;</div>
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#pragma once</span></div>
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+</div><!--header-->
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXACT_COMPARISON_HXX</span></div>
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+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="keywordtype">bool</span> are_different(<span class="keywordtype">string</span> variable_name, <span class="keyword">const</span> <span class="keywordtype">int</span> &amp;v1, <span class="keyword">const</span> <span class="keywordtype">int</span> &amp;v2);</div>
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+<div class="title">delta_node.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_DELTA_NODE_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_DELTA_NODE_HXX</span></div>
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+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
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+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="preprocessor">#include &quot;common/random.hxx&quot;</span></div>
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+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &quot;rnn_node_interface.hxx&quot;</span></div>
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+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160; </div>
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+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160; </div>
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+<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* copy() <span class="keyword">const</span>;</div>
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+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
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+	margin-right: 15px;
+}
+
+/* @group Link Styling */
+
+a {
+	color: #3D578C;
+	font-weight: normal;
+	text-decoration: none;
+}
+
+.contents a:visited {
+	color: #4665A2;
+}
+
+a:hover {
+	text-decoration: underline;
+}
+
+a.qindex {
+	font-weight: bold;
+}
+
+a.qindexHL {
+	font-weight: bold;
+	background-color: #9CAFD4;
+	color: #FFFFFF;
+	border: 1px double #869DCA;
+}
+
+.contents a.qindexHL:visited {
+        color: #FFFFFF;
+}
+
+a.el {
+	font-weight: bold;
+}
+
+a.elRef {
+}
+
+a.code, a.code:visited, a.line, a.line:visited {
+	color: #4665A2; 
+}
+
+a.codeRef, a.codeRef:visited, a.lineRef, a.lineRef:visited {
+	color: #4665A2; 
+}
+
+/* @end */
+
+dl.el {
+	margin-left: -1cm;
+}
+
+ul {
+  overflow: hidden; /*Fixed: list item bullets overlap floating elements*/
+}
+
+#side-nav ul {
+  overflow: visible; /* reset ul rule for scroll bar in GENERATE_TREEVIEW window */
+}
+
+#main-nav ul {
+  overflow: visible; /* reset ul rule for the navigation bar drop down lists */
+}
+
+.fragment {
+  text-align: left;
+  direction: ltr;
+  overflow-x: auto; /*Fixed: fragment lines overlap floating elements*/
+  overflow-y: hidden;
+}
+
+pre.fragment {
+        border: 1px solid #C4CFE5;
+        background-color: #FBFCFD;
+        padding: 4px 6px;
+        margin: 4px 8px 4px 2px;
+        overflow: auto;
+        word-wrap: break-word;
+        font-size:  9pt;
+        line-height: 125%;
+        font-family: monospace, fixed;
+        font-size: 105%;
+}
+
+div.fragment {
+  padding: 0 0 1px 0; /*Fixed: last line underline overlap border*/
+  margin: 4px 8px 4px 2px;
+	background-color: #FBFCFD;
+	border: 1px solid #C4CFE5;
+}
+
+div.line {
+	font-family: monospace, fixed;
+        font-size: 13px;
+	min-height: 13px;
+	line-height: 1.0;
+	text-wrap: unrestricted;
+	white-space: -moz-pre-wrap; /* Moz */
+	white-space: -pre-wrap;     /* Opera 4-6 */
+	white-space: -o-pre-wrap;   /* Opera 7 */
+	white-space: pre-wrap;      /* CSS3  */
+	word-wrap: break-word;      /* IE 5.5+ */
+	text-indent: -53px;
+	padding-left: 53px;
+	padding-bottom: 0px;
+	margin: 0px;
+	-webkit-transition-property: background-color, box-shadow;
+	-webkit-transition-duration: 0.5s;
+	-moz-transition-property: background-color, box-shadow;
+	-moz-transition-duration: 0.5s;
+	-ms-transition-property: background-color, box-shadow;
+	-ms-transition-duration: 0.5s;
+	-o-transition-property: background-color, box-shadow;
+	-o-transition-duration: 0.5s;
+	transition-property: background-color, box-shadow;
+	transition-duration: 0.5s;
+}
+
+div.line:after {
+    content:"\000A";
+    white-space: pre;
+}
+
+div.line.glow {
+	background-color: cyan;
+	box-shadow: 0 0 10px cyan;
+}
+
+
+span.lineno {
+	padding-right: 4px;
+	text-align: right;
+	border-right: 2px solid #0F0;
+	background-color: #E8E8E8;
+        white-space: pre;
+}
+span.lineno a {
+	background-color: #D8D8D8;
+}
+
+span.lineno a:hover {
+	background-color: #C8C8C8;
+}
+
+.lineno {
+	-webkit-touch-callout: none;
+	-webkit-user-select: none;
+	-khtml-user-select: none;
+	-moz-user-select: none;
+	-ms-user-select: none;
+	user-select: none;
+}
+
+div.ah, span.ah {
+	background-color: black;
+	font-weight: bold;
+	color: #FFFFFF;
+	margin-bottom: 3px;
+	margin-top: 3px;
+	padding: 0.2em;
+	border: solid thin #333;
+	border-radius: 0.5em;
+	-webkit-border-radius: .5em;
+	-moz-border-radius: .5em;
+	box-shadow: 2px 2px 3px #999;
+	-webkit-box-shadow: 2px 2px 3px #999;
+	-moz-box-shadow: rgba(0, 0, 0, 0.15) 2px 2px 2px;
+	background-image: -webkit-gradient(linear, left top, left bottom, from(#eee), to(#000),color-stop(0.3, #444));
+	background-image: -moz-linear-gradient(center top, #eee 0%, #444 40%, #000 110%);
+}
+
+div.classindex ul {
+        list-style: none;
+        padding-left: 0;
+}
+
+div.classindex span.ai {
+        display: inline-block;
+}
+
+div.groupHeader {
+	margin-left: 16px;
+	margin-top: 12px;
+	font-weight: bold;
+}
+
+div.groupText {
+	margin-left: 16px;
+	font-style: italic;
+}
+
+body {
+	background-color: white;
+	color: black;
+        margin: 0;
+}
+
+div.contents {
+	margin-top: 10px;
+	margin-left: 12px;
+	margin-right: 8px;
+}
+
+td.indexkey {
+	background-color: #EBEFF6;
+	font-weight: bold;
+	border: 1px solid #C4CFE5;
+	margin: 2px 0px 2px 0;
+	padding: 2px 10px;
+        white-space: nowrap;
+        vertical-align: top;
+}
+
+td.indexvalue {
+	background-color: #EBEFF6;
+	border: 1px solid #C4CFE5;
+	padding: 2px 10px;
+	margin: 2px 0px;
+}
+
+tr.memlist {
+	background-color: #EEF1F7;
+}
+
+p.formulaDsp {
+	text-align: center;
+}
+
+img.formulaDsp {
+	
+}
+
+img.formulaInl, img.inline {
+	vertical-align: middle;
+}
+
+div.center {
+	text-align: center;
+        margin-top: 0px;
+        margin-bottom: 0px;
+        padding: 0px;
+}
+
+div.center img {
+	border: 0px;
+}
+
+address.footer {
+	text-align: right;
+	padding-right: 12px;
+}
+
+img.footer {
+	border: 0px;
+	vertical-align: middle;
+}
+
+/* @group Code Colorization */
+
+span.keyword {
+	color: #008000
+}
+
+span.keywordtype {
+	color: #604020
+}
+
+span.keywordflow {
+	color: #e08000
+}
+
+span.comment {
+	color: #800000
+}
+
+span.preprocessor {
+	color: #806020
+}
+
+span.stringliteral {
+	color: #002080
+}
+
+span.charliteral {
+	color: #008080
+}
+
+span.vhdldigit { 
+	color: #ff00ff 
+}
+
+span.vhdlchar { 
+	color: #000000 
+}
+
+span.vhdlkeyword { 
+	color: #700070 
+}
+
+span.vhdllogic { 
+	color: #ff0000 
+}
+
+blockquote {
+        background-color: #F7F8FB;
+        border-left: 2px solid #9CAFD4;
+        margin: 0 24px 0 4px;
+        padding: 0 12px 0 16px;
+}
+
+blockquote.DocNodeRTL {
+   border-left: 0;
+   border-right: 2px solid #9CAFD4;
+   margin: 0 4px 0 24px;
+   padding: 0 16px 0 12px;
+}
+
+/* @end */
+
+/*
+.search {
+	color: #003399;
+	font-weight: bold;
+}
+
+form.search {
+	margin-bottom: 0px;
+	margin-top: 0px;
+}
+
+input.search {
+	font-size: 75%;
+	color: #000080;
+	font-weight: normal;
+	background-color: #e8eef2;
+}
+*/
+
+td.tiny {
+	font-size: 75%;
+}
+
+.dirtab {
+	padding: 4px;
+	border-collapse: collapse;
+	border: 1px solid #A3B4D7;
+}
+
+th.dirtab {
+	background: #EBEFF6;
+	font-weight: bold;
+}
+
+hr {
+	height: 0px;
+	border: none;
+	border-top: 1px solid #4A6AAA;
+}
+
+hr.footer {
+	height: 1px;
+}
+
+/* @group Member Descriptions */
+
+table.memberdecls {
+	border-spacing: 0px;
+	padding: 0px;
+}
+
+.memberdecls td, .fieldtable tr {
+	-webkit-transition-property: background-color, box-shadow;
+	-webkit-transition-duration: 0.5s;
+	-moz-transition-property: background-color, box-shadow;
+	-moz-transition-duration: 0.5s;
+	-ms-transition-property: background-color, box-shadow;
+	-ms-transition-duration: 0.5s;
+	-o-transition-property: background-color, box-shadow;
+	-o-transition-duration: 0.5s;
+	transition-property: background-color, box-shadow;
+	transition-duration: 0.5s;
+}
+
+.memberdecls td.glow, .fieldtable tr.glow {
+	background-color: cyan;
+	box-shadow: 0 0 15px cyan;
+}
+
+.mdescLeft, .mdescRight,
+.memItemLeft, .memItemRight,
+.memTemplItemLeft, .memTemplItemRight, .memTemplParams {
+	background-color: #F9FAFC;
+	border: none;
+	margin: 4px;
+	padding: 1px 0 0 8px;
+}
+
+.mdescLeft, .mdescRight {
+	padding: 0px 8px 4px 8px;
+	color: #555;
+}
+
+.memSeparator {
+        border-bottom: 1px solid #DEE4F0;
+        line-height: 1px;
+        margin: 0px;
+        padding: 0px;
+}
+
+.memItemLeft, .memTemplItemLeft {
+        white-space: nowrap;
+}
+
+.memItemRight, .memTemplItemRight {
+	width: 100%;
+}
+
+.memTemplParams {
+	color: #4665A2;
+        white-space: nowrap;
+	font-size: 80%;
+}
+
+/* @end */
+
+/* @group Member Details */
+
+/* Styles for detailed member documentation */
+
+.memtitle {
+	padding: 8px;
+	border-top: 1px solid #A8B8D9;
+	border-left: 1px solid #A8B8D9;
+	border-right: 1px solid #A8B8D9;
+	border-top-right-radius: 4px;
+	border-top-left-radius: 4px;
+	margin-bottom: -1px;
+	background-image: url('nav_f.png');
+	background-repeat: repeat-x;
+	background-color: #E2E8F2;
+	line-height: 1.25;
+	font-weight: 300;
+	float:left;
+}
+
+.permalink
+{
+        font-size: 65%;
+        display: inline-block;
+        vertical-align: middle;
+}
+
+.memtemplate {
+	font-size: 80%;
+	color: #4665A2;
+	font-weight: normal;
+	margin-left: 9px;
+}
+
+.memnav {
+	background-color: #EBEFF6;
+	border: 1px solid #A3B4D7;
+	text-align: center;
+	margin: 2px;
+	margin-right: 15px;
+	padding: 2px;
+}
+
+.mempage {
+	width: 100%;
+}
+
+.memitem {
+	padding: 0;
+	margin-bottom: 10px;
+	margin-right: 5px;
+        -webkit-transition: box-shadow 0.5s linear;
+        -moz-transition: box-shadow 0.5s linear;
+        -ms-transition: box-shadow 0.5s linear;
+        -o-transition: box-shadow 0.5s linear;
+        transition: box-shadow 0.5s linear;
+        display: table !important;
+        width: 100%;
+}
+
+.memitem.glow {
+         box-shadow: 0 0 15px cyan;
+}
+
+.memname {
+        font-weight: 400;
+        margin-left: 6px;
+}
+
+.memname td {
+	vertical-align: bottom;
+}
+
+.memproto, dl.reflist dt {
+        border-top: 1px solid #A8B8D9;
+        border-left: 1px solid #A8B8D9;
+        border-right: 1px solid #A8B8D9;
+        padding: 6px 0px 6px 0px;
+        color: #253555;
+        font-weight: bold;
+        text-shadow: 0px 1px 1px rgba(255, 255, 255, 0.9);
+        background-color: #DFE5F1;
+        /* opera specific markup */
+        box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15);
+        border-top-right-radius: 4px;
+        /* firefox specific markup */
+        -moz-box-shadow: rgba(0, 0, 0, 0.15) 5px 5px 5px;
+        -moz-border-radius-topright: 4px;
+        /* webkit specific markup */
+        -webkit-box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15);
+        -webkit-border-top-right-radius: 4px;
+
+}
+
+.overload {
+        font-family: "courier new",courier,monospace;
+	font-size: 65%;
+}
+
+.memdoc, dl.reflist dd {
+        border-bottom: 1px solid #A8B8D9;      
+        border-left: 1px solid #A8B8D9;      
+        border-right: 1px solid #A8B8D9; 
+        padding: 6px 10px 2px 10px;
+        background-color: #FBFCFD;
+        border-top-width: 0;
+        background-image:url('nav_g.png');
+        background-repeat:repeat-x;
+        background-color: #FFFFFF;
+        /* opera specific markup */
+        border-bottom-left-radius: 4px;
+        border-bottom-right-radius: 4px;
+        box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15);
+        /* firefox specific markup */
+        -moz-border-radius-bottomleft: 4px;
+        -moz-border-radius-bottomright: 4px;
+        -moz-box-shadow: rgba(0, 0, 0, 0.15) 5px 5px 5px;
+        /* webkit specific markup */
+        -webkit-border-bottom-left-radius: 4px;
+        -webkit-border-bottom-right-radius: 4px;
+        -webkit-box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15);
+}
+
+dl.reflist dt {
+        padding: 5px;
+}
+
+dl.reflist dd {
+        margin: 0px 0px 10px 0px;
+        padding: 5px;
+}
+
+.paramkey {
+	text-align: right;
+}
+
+.paramtype {
+	white-space: nowrap;
+}
+
+.paramname {
+	color: #602020;
+	white-space: nowrap;
+}
+.paramname em {
+	font-style: normal;
+}
+.paramname code {
+        line-height: 14px;
+}
+
+.params, .retval, .exception, .tparams {
+        margin-left: 0px;
+        padding-left: 0px;
+}       
+
+.params .paramname, .retval .paramname, .tparams .paramname, .exception .paramname {
+        font-weight: bold;
+        vertical-align: top;
+}
+        
+.params .paramtype, .tparams .paramtype {
+        font-style: italic;
+        vertical-align: top;
+}       
+        
+.params .paramdir, .tparams .paramdir {
+        font-family: "courier new",courier,monospace;
+        vertical-align: top;
+}
+
+table.mlabels {
+	border-spacing: 0px;
+}
+
+td.mlabels-left {
+	width: 100%;
+	padding: 0px;
+}
+
+td.mlabels-right {
+	vertical-align: bottom;
+	padding: 0px;
+	white-space: nowrap;
+}
+
+span.mlabels {
+        margin-left: 8px;
+}
+
+span.mlabel {
+        background-color: #728DC1;
+        border-top:1px solid #5373B4;
+        border-left:1px solid #5373B4;
+        border-right:1px solid #C4CFE5;
+        border-bottom:1px solid #C4CFE5;
+	text-shadow: none;
+	color: white;
+	margin-right: 4px;
+	padding: 2px 3px;
+	border-radius: 3px;
+	font-size: 7pt;
+	white-space: nowrap;
+	vertical-align: middle;
+}
+
+
+
+/* @end */
+
+/* these are for tree view inside a (index) page */
+
+div.directory {
+        margin: 10px 0px;
+        border-top: 1px solid #9CAFD4;
+        border-bottom: 1px solid #9CAFD4;
+        width: 100%;
+}
+
+.directory table {
+        border-collapse:collapse;
+}
+
+.directory td {
+        margin: 0px;
+        padding: 0px;
+	vertical-align: top;
+}
+
+.directory td.entry {
+        white-space: nowrap;
+        padding-right: 6px;
+	padding-top: 3px;
+}
+
+.directory td.entry a {
+        outline:none;
+}
+
+.directory td.entry a img {
+        border: none;
+}
+
+.directory td.desc {
+        width: 100%;
+        padding-left: 6px;
+	padding-right: 6px;
+	padding-top: 3px;
+	border-left: 1px solid rgba(0,0,0,0.05);
+}
+
+.directory tr.even {
+	padding-left: 6px;
+	background-color: #F7F8FB;
+}
+
+.directory img {
+	vertical-align: -30%;
+}
+
+.directory .levels {
+        white-space: nowrap;
+        width: 100%;
+        text-align: right;
+        font-size: 9pt;
+}
+
+.directory .levels span {
+        cursor: pointer;
+        padding-left: 2px;
+        padding-right: 2px;
+	color: #3D578C;
+}
+
+.arrow {
+    color: #9CAFD4;
+    -webkit-user-select: none;
+    -khtml-user-select: none;
+    -moz-user-select: none;
+    -ms-user-select: none;
+    user-select: none;
+    cursor: pointer;
+    font-size: 80%;
+    display: inline-block;
+    width: 16px;
+    height: 22px;
+}
+
+.icon {
+    font-family: Arial, Helvetica;
+    font-weight: bold;
+    font-size: 12px;
+    height: 14px;
+    width: 16px;
+    display: inline-block;
+    background-color: #728DC1;
+    color: white;
+    text-align: center;
+    border-radius: 4px;
+    margin-left: 2px;
+    margin-right: 2px;
+}
+
+.icona {
+    width: 24px;
+    height: 22px;
+    display: inline-block;
+}
+
+.iconfopen {
+    width: 24px;
+    height: 18px;
+    margin-bottom: 4px;
+    background-image:url('folderopen.png');
+    background-position: 0px -4px;
+    background-repeat: repeat-y;
+    vertical-align:top;
+    display: inline-block;
+}
+
+.iconfclosed {
+    width: 24px;
+    height: 18px;
+    margin-bottom: 4px;
+    background-image:url('folderclosed.png');
+    background-position: 0px -4px;
+    background-repeat: repeat-y;
+    vertical-align:top;
+    display: inline-block;
+}
+
+.icondoc {
+    width: 24px;
+    height: 18px;
+    margin-bottom: 4px;
+    background-image:url('doc.png');
+    background-position: 0px -4px;
+    background-repeat: repeat-y;
+    vertical-align:top;
+    display: inline-block;
+}
+
+table.directory {
+    font: 400 14px Roboto,sans-serif;
+}
+
+/* @end */
+
+div.dynheader {
+        margin-top: 8px;
+	-webkit-touch-callout: none;
+	-webkit-user-select: none;
+	-khtml-user-select: none;
+	-moz-user-select: none;
+	-ms-user-select: none;
+	user-select: none;
+}
+
+address {
+	font-style: normal;
+	color: #2A3D61;
+}
+
+table.doxtable caption {
+	caption-side: top;
+}
+
+table.doxtable {
+	border-collapse:collapse;
+        margin-top: 4px;
+        margin-bottom: 4px;
+}
+
+table.doxtable td, table.doxtable th {
+	border: 1px solid #2D4068;
+	padding: 3px 7px 2px;
+}
+
+table.doxtable th {
+	background-color: #374F7F;
+	color: #FFFFFF;
+	font-size: 110%;
+	padding-bottom: 4px;
+	padding-top: 5px;
+}
+
+table.fieldtable {
+        /*width: 100%;*/
+        margin-bottom: 10px;
+        border: 1px solid #A8B8D9;
+        border-spacing: 0px;
+        -moz-border-radius: 4px;
+        -webkit-border-radius: 4px;
+        border-radius: 4px;
+        -moz-box-shadow: rgba(0, 0, 0, 0.15) 2px 2px 2px;
+        -webkit-box-shadow: 2px 2px 2px rgba(0, 0, 0, 0.15);
+        box-shadow: 2px 2px 2px rgba(0, 0, 0, 0.15);
+}
+
+.fieldtable td, .fieldtable th {
+        padding: 3px 7px 2px;
+}
+
+.fieldtable td.fieldtype, .fieldtable td.fieldname {
+        white-space: nowrap;
+        border-right: 1px solid #A8B8D9;
+        border-bottom: 1px solid #A8B8D9;
+        vertical-align: top;
+}
+
+.fieldtable td.fieldname {
+        padding-top: 3px;
+}
+
+.fieldtable td.fielddoc {
+        border-bottom: 1px solid #A8B8D9;
+        /*width: 100%;*/
+}
+
+.fieldtable td.fielddoc p:first-child {
+        margin-top: 0px;
+}       
+        
+.fieldtable td.fielddoc p:last-child {
+        margin-bottom: 2px;
+}
+
+.fieldtable tr:last-child td {
+        border-bottom: none;
+}
+
+.fieldtable th {
+        background-image:url('nav_f.png');
+        background-repeat:repeat-x;
+        background-color: #E2E8F2;
+        font-size: 90%;
+        color: #253555;
+        padding-bottom: 4px;
+        padding-top: 5px;
+        text-align:left;
+        font-weight: 400;
+        -moz-border-radius-topleft: 4px;
+        -moz-border-radius-topright: 4px;
+        -webkit-border-top-left-radius: 4px;
+        -webkit-border-top-right-radius: 4px;
+        border-top-left-radius: 4px;
+        border-top-right-radius: 4px;
+        border-bottom: 1px solid #A8B8D9;
+}
+
+
+.tabsearch {
+	top: 0px;
+	left: 10px;
+	height: 36px;
+	background-image: url('tab_b.png');
+	z-index: 101;
+	overflow: hidden;
+	font-size: 13px;
+}
+
+.navpath ul
+{
+	font-size: 11px;
+	background-image:url('tab_b.png');
+	background-repeat:repeat-x;
+	background-position: 0 -5px;
+	height:30px;
+	line-height:30px;
+	color:#8AA0CC;
+	border:solid 1px #C2CDE4;
+	overflow:hidden;
+	margin:0px;
+	padding:0px;
+}
+
+.navpath li
+{
+	list-style-type:none;
+	float:left;
+	padding-left:10px;
+	padding-right:15px;
+	background-image:url('bc_s.png');
+	background-repeat:no-repeat;
+	background-position:right;
+	color:#364D7C;
+}
+
+.navpath li.navelem a
+{
+	height:32px;
+	display:block;
+	text-decoration: none;
+	outline: none;
+	color: #283A5D;
+	font-family: 'Lucida Grande',Geneva,Helvetica,Arial,sans-serif;
+	text-shadow: 0px 1px 1px rgba(255, 255, 255, 0.9);
+	text-decoration: none;        
+}
+
+.navpath li.navelem a:hover
+{
+	color:#6884BD;
+}
+
+.navpath li.footer
+{
+        list-style-type:none;
+        float:right;
+        padding-left:10px;
+        padding-right:15px;
+        background-image:none;
+        background-repeat:no-repeat;
+        background-position:right;
+        color:#364D7C;
+        font-size: 8pt;
+}
+
+
+div.summary
+{
+	float: right;
+	font-size: 8pt;
+	padding-right: 5px;
+	width: 50%;
+	text-align: right;
+}       
+
+div.summary a
+{
+	white-space: nowrap;
+}
+
+table.classindex
+{
+        margin: 10px;
+        white-space: nowrap;
+        margin-left: 3%;
+        margin-right: 3%;
+        width: 94%;
+        border: 0;
+        border-spacing: 0; 
+        padding: 0;
+}
+
+div.ingroups
+{
+	font-size: 8pt;
+	width: 50%;
+	text-align: left;
+}
+
+div.ingroups a
+{
+	white-space: nowrap;
+}
+
+div.header
+{
+        background-image:url('nav_h.png');
+        background-repeat:repeat-x;
+	background-color: #F9FAFC;
+	margin:  0px;
+	border-bottom: 1px solid #C4CFE5;
+}
+
+div.headertitle
+{
+	padding: 5px 5px 5px 10px;
+}
+
+.PageDocRTL-title div.headertitle {
+  text-align: right;
+  direction: rtl;
+}
+
+dl {
+        padding: 0 0 0 0;
+}
+
+/* dl.note, dl.warning, dl.attention, dl.pre, dl.post, dl.invariant, dl.deprecated, dl.todo, dl.test, dl.bug, dl.examples */
+dl.section {
+	margin-left: 0px;
+	padding-left: 0px;
+}
+
+dl.section.DocNodeRTL {
+  margin-right: 0px;
+  padding-right: 0px;
+}
+
+dl.note {
+  margin-left: -7px;
+  padding-left: 3px;
+  border-left: 4px solid;
+  border-color: #D0C000;
+}
+
+dl.note.DocNodeRTL {
+  margin-left: 0;
+  padding-left: 0;
+  border-left: 0;
+  margin-right: -7px;
+  padding-right: 3px;
+  border-right: 4px solid;
+  border-color: #D0C000;
+}
+
+dl.warning, dl.attention {
+  margin-left: -7px;
+  padding-left: 3px;
+  border-left: 4px solid;
+  border-color: #FF0000;
+}
+
+dl.warning.DocNodeRTL, dl.attention.DocNodeRTL {
+  margin-left: 0;
+  padding-left: 0;
+  border-left: 0;
+  margin-right: -7px;
+  padding-right: 3px;
+  border-right: 4px solid;
+  border-color: #FF0000;
+}
+
+dl.pre, dl.post, dl.invariant {
+  margin-left: -7px;
+  padding-left: 3px;
+  border-left: 4px solid;
+  border-color: #00D000;
+}
+
+dl.pre.DocNodeRTL, dl.post.DocNodeRTL, dl.invariant.DocNodeRTL {
+  margin-left: 0;
+  padding-left: 0;
+  border-left: 0;
+  margin-right: -7px;
+  padding-right: 3px;
+  border-right: 4px solid;
+  border-color: #00D000;
+}
+
+dl.deprecated {
+  margin-left: -7px;
+  padding-left: 3px;
+  border-left: 4px solid;
+  border-color: #505050;
+}
+
+dl.deprecated.DocNodeRTL {
+  margin-left: 0;
+  padding-left: 0;
+  border-left: 0;
+  margin-right: -7px;
+  padding-right: 3px;
+  border-right: 4px solid;
+  border-color: #505050;
+}
+
+dl.todo {
+  margin-left: -7px;
+  padding-left: 3px;
+  border-left: 4px solid;
+  border-color: #00C0E0;
+}
+
+dl.todo.DocNodeRTL {
+  margin-left: 0;
+  padding-left: 0;
+  border-left: 0;
+  margin-right: -7px;
+  padding-right: 3px;
+  border-right: 4px solid;
+  border-color: #00C0E0;
+}
+
+dl.test {
+  margin-left: -7px;
+  padding-left: 3px;
+  border-left: 4px solid;
+  border-color: #3030E0;
+}
+
+dl.test.DocNodeRTL {
+  margin-left: 0;
+  padding-left: 0;
+  border-left: 0;
+  margin-right: -7px;
+  padding-right: 3px;
+  border-right: 4px solid;
+  border-color: #3030E0;
+}
+
+dl.bug {
+  margin-left: -7px;
+  padding-left: 3px;
+  border-left: 4px solid;
+  border-color: #C08050;
+}
+
+dl.bug.DocNodeRTL {
+  margin-left: 0;
+  padding-left: 0;
+  border-left: 0;
+  margin-right: -7px;
+  padding-right: 3px;
+  border-right: 4px solid;
+  border-color: #C08050;
+}
+
+dl.section dd {
+	margin-bottom: 6px;
+}
+
+
+#projectlogo
+{
+	text-align: center;
+	vertical-align: bottom;
+	border-collapse: separate;
+}
+ 
+#projectlogo img
+{ 
+	border: 0px none;
+}
+ 
+#projectalign
+{
+        vertical-align: middle;
+}
+
+#projectname
+{
+	font: 300% Tahoma, Arial,sans-serif;
+	margin: 0px;
+	padding: 2px 0px;
+}
+    
+#projectbrief
+{
+	font: 120% Tahoma, Arial,sans-serif;
+	margin: 0px;
+	padding: 0px;
+}
+
+#projectnumber
+{
+	font: 50% Tahoma, Arial,sans-serif;
+	margin: 0px;
+	padding: 0px;
+}
+
+#titlearea
+{
+	padding: 0px;
+	margin: 0px;
+	width: 100%;
+	border-bottom: 1px solid #5373B4;
+}
+
+.image
+{
+        text-align: center;
+}
+
+.dotgraph
+{
+        text-align: center;
+}
+
+.mscgraph
+{
+        text-align: center;
+}
+
+.plantumlgraph
+{
+        text-align: center;
+}
+
+.diagraph
+{
+        text-align: center;
+}
+
+.caption
+{
+	font-weight: bold;
+}
+
+div.zoom
+{
+	border: 1px solid #90A5CE;
+}
+
+dl.citelist {
+        margin-bottom:50px;
+}
+
+dl.citelist dt {
+        color:#334975;
+        float:left;
+        font-weight:bold;
+        margin-right:10px;
+        padding:5px;
+}
+
+dl.citelist dd {
+        margin:2px 0;
+        padding:5px 0;
+}
+
+div.toc {
+        padding: 14px 25px;
+        background-color: #F4F6FA;
+        border: 1px solid #D8DFEE;
+        border-radius: 7px 7px 7px 7px;
+        float: right;
+        height: auto;
+        margin: 0 8px 10px 10px;
+        width: 200px;
+}
+
+.PageDocRTL-title div.toc {
+  float: left !important;
+  text-align: right;
+}
+
+div.toc li {
+        background: url("bdwn.png") no-repeat scroll 0 5px transparent;
+        font: 10px/1.2 Verdana,DejaVu Sans,Geneva,sans-serif;
+        margin-top: 5px;
+        padding-left: 10px;
+        padding-top: 2px;
+}
+
+.PageDocRTL-title div.toc li {
+  background-position-x: right !important;
+  padding-left: 0 !important;
+  padding-right: 10px;
+}
+
+div.toc h3 {
+        font: bold 12px/1.2 Arial,FreeSans,sans-serif;
+	color: #4665A2;
+        border-bottom: 0 none;
+        margin: 0;
+}
+
+div.toc ul {
+        list-style: none outside none;
+        border: medium none;
+        padding: 0px;
+}       
+
+div.toc li.level1 {
+        margin-left: 0px;
+}
+
+div.toc li.level2 {
+        margin-left: 15px;
+}
+
+div.toc li.level3 {
+        margin-left: 30px;
+}
+
+div.toc li.level4 {
+        margin-left: 45px;
+}
+
+.PageDocRTL-title div.toc li.level1 {
+  margin-left: 0 !important;
+  margin-right: 0;
+}
+
+.PageDocRTL-title div.toc li.level2 {
+  margin-left: 0 !important;
+  margin-right: 15px;
+}
+
+.PageDocRTL-title div.toc li.level3 {
+  margin-left: 0 !important;
+  margin-right: 30px;
+}
+
+.PageDocRTL-title div.toc li.level4 {
+  margin-left: 0 !important;
+  margin-right: 45px;
+}
+
+.inherit_header {
+        font-weight: bold;
+        color: gray;
+        cursor: pointer;
+	-webkit-touch-callout: none;
+	-webkit-user-select: none;
+	-khtml-user-select: none;
+	-moz-user-select: none;
+	-ms-user-select: none;
+	user-select: none;
+}
+
+.inherit_header td {
+        padding: 6px 0px 2px 5px;
+}
+
+.inherit {
+        display: none;
+}
+
+tr.heading h2 {
+        margin-top: 12px;
+        margin-bottom: 4px;
+}
+
+/* tooltip related style info */
+
+.ttc {
+        position: absolute;
+        display: none;
+}
+
+#powerTip {
+	cursor: default;
+	white-space: nowrap;
+	background-color: white;
+	border: 1px solid gray;
+	border-radius: 4px 4px 4px 4px;
+	box-shadow: 1px 1px 7px gray;
+	display: none;
+	font-size: smaller;
+	max-width: 80%;
+	opacity: 0.9;
+	padding: 1ex 1em 1em;
+	position: absolute;
+	z-index: 2147483647;
+}
+
+#powerTip div.ttdoc {
+        color: grey;
+	font-style: italic;
+}
+
+#powerTip div.ttname a {
+        font-weight: bold;
+}
+
+#powerTip div.ttname {
+        font-weight: bold;
+}
+
+#powerTip div.ttdeci {
+        color: #006318;
+}
+
+#powerTip div {
+        margin: 0px;
+        padding: 0px;
+        font: 12px/16px Roboto,sans-serif;
+}
+
+#powerTip:before, #powerTip:after {
+	content: "";
+	position: absolute;
+	margin: 0px;
+}
+
+#powerTip.n:after,  #powerTip.n:before,
+#powerTip.s:after,  #powerTip.s:before,
+#powerTip.w:after,  #powerTip.w:before,
+#powerTip.e:after,  #powerTip.e:before,
+#powerTip.ne:after, #powerTip.ne:before,
+#powerTip.se:after, #powerTip.se:before,
+#powerTip.nw:after, #powerTip.nw:before,
+#powerTip.sw:after, #powerTip.sw:before {
+	border: solid transparent;
+	content: " ";
+	height: 0;
+	width: 0;
+	position: absolute;
+}
+
+#powerTip.n:after,  #powerTip.s:after,
+#powerTip.w:after,  #powerTip.e:after,
+#powerTip.nw:after, #powerTip.ne:after,
+#powerTip.sw:after, #powerTip.se:after {
+	border-color: rgba(255, 255, 255, 0);
+}
+
+#powerTip.n:before,  #powerTip.s:before,
+#powerTip.w:before,  #powerTip.e:before,
+#powerTip.nw:before, #powerTip.ne:before,
+#powerTip.sw:before, #powerTip.se:before {
+	border-color: rgba(128, 128, 128, 0);
+}
+
+#powerTip.n:after,  #powerTip.n:before,
+#powerTip.ne:after, #powerTip.ne:before,
+#powerTip.nw:after, #powerTip.nw:before {
+	top: 100%;
+}
+
+#powerTip.n:after, #powerTip.ne:after, #powerTip.nw:after {
+	border-top-color: #FFFFFF;
+	border-width: 10px;
+	margin: 0px -10px;
+}
+#powerTip.n:before {
+	border-top-color: #808080;
+	border-width: 11px;
+	margin: 0px -11px;
+}
+#powerTip.n:after, #powerTip.n:before {
+	left: 50%;
+}
+
+#powerTip.nw:after, #powerTip.nw:before {
+	right: 14px;
+}
+
+#powerTip.ne:after, #powerTip.ne:before {
+	left: 14px;
+}
+
+#powerTip.s:after,  #powerTip.s:before,
+#powerTip.se:after, #powerTip.se:before,
+#powerTip.sw:after, #powerTip.sw:before {
+	bottom: 100%;
+}
+
+#powerTip.s:after, #powerTip.se:after, #powerTip.sw:after {
+	border-bottom-color: #FFFFFF;
+	border-width: 10px;
+	margin: 0px -10px;
+}
+
+#powerTip.s:before, #powerTip.se:before, #powerTip.sw:before {
+	border-bottom-color: #808080;
+	border-width: 11px;
+	margin: 0px -11px;
+}
+
+#powerTip.s:after, #powerTip.s:before {
+	left: 50%;
+}
+
+#powerTip.sw:after, #powerTip.sw:before {
+	right: 14px;
+}
+
+#powerTip.se:after, #powerTip.se:before {
+	left: 14px;
+}
+
+#powerTip.e:after, #powerTip.e:before {
+	left: 100%;
+}
+#powerTip.e:after {
+	border-left-color: #FFFFFF;
+	border-width: 10px;
+	top: 50%;
+	margin-top: -10px;
+}
+#powerTip.e:before {
+	border-left-color: #808080;
+	border-width: 11px;
+	top: 50%;
+	margin-top: -11px;
+}
+
+#powerTip.w:after, #powerTip.w:before {
+	right: 100%;
+}
+#powerTip.w:after {
+	border-right-color: #FFFFFF;
+	border-width: 10px;
+	top: 50%;
+	margin-top: -10px;
+}
+#powerTip.w:before {
+	border-right-color: #808080;
+	border-width: 11px;
+	top: 50%;
+	margin-top: -11px;
+}
+
+@media print
+{
+  #top { display: none; }
+  #side-nav { display: none; }
+  #nav-path { display: none; }
+  body { overflow:visible; }
+  h1, h2, h3, h4, h5, h6 { page-break-after: avoid; }
+  .summary { display: none; }
+  .memitem { page-break-inside: avoid; }
+  #doc-content
+  {
+    margin-left:0 !important;
+    height:auto !important;
+    width:auto !important;
+    overflow:inherit;
+    display:inline;
+  }
+}
+
+/* @group Markdown */
+
+/*
+table.markdownTable {
+	border-collapse:collapse;
+        margin-top: 4px;
+        margin-bottom: 4px;
+}
+
+table.markdownTable td, table.markdownTable th {
+	border: 1px solid #2D4068;
+	padding: 3px 7px 2px;
+}
+
+table.markdownTableHead tr {
+}
+
+table.markdownTableBodyLeft td, table.markdownTable th {
+	border: 1px solid #2D4068;
+	padding: 3px 7px 2px;
+}
+
+th.markdownTableHeadLeft th.markdownTableHeadRight th.markdownTableHeadCenter th.markdownTableHeadNone {
+	background-color: #374F7F;
+	color: #FFFFFF;
+	font-size: 110%;
+	padding-bottom: 4px;
+	padding-top: 5px;
+}
+
+th.markdownTableHeadLeft {
+	text-align: left
+}
+
+th.markdownTableHeadRight {
+	text-align: right
+}
+
+th.markdownTableHeadCenter {
+	text-align: center
+}
+*/
+
+table.markdownTable {
+	border-collapse:collapse;
+        margin-top: 4px;
+        margin-bottom: 4px;
+}
+
+table.markdownTable td, table.markdownTable th {
+	border: 1px solid #2D4068;
+	padding: 3px 7px 2px;
+}
+
+table.markdownTable tr {
+}
+
+th.markdownTableHeadLeft, th.markdownTableHeadRight, th.markdownTableHeadCenter, th.markdownTableHeadNone {
+	background-color: #374F7F;
+	color: #FFFFFF;
+	font-size: 110%;
+	padding-bottom: 4px;
+	padding-top: 5px;
+}
+
+th.markdownTableHeadLeft, td.markdownTableBodyLeft {
+	text-align: left
+}
+
+th.markdownTableHeadRight, td.markdownTableBodyRight {
+	text-align: right
+}
+
+th.markdownTableHeadCenter, td.markdownTableBodyCenter {
+	text-align: center
+}
+
+.DocNodeRTL {
+  text-align: right;
+  direction: rtl;
+}
+
+.DocNodeLTR {
+  text-align: left;
+  direction: ltr;
+}
+
+table.DocNodeRTL {
+   width: auto;
+   margin-right: 0;
+   margin-left: auto;
+}
+
+table.DocNodeLTR {
+   width: auto;
+   margin-right: auto;
+   margin-left: 0;
+}
+
+tt, code, kbd, samp
+{
+  display: inline-block;
+  direction:ltr; 
+}
+/* @end */
+
+u {
+	text-decoration: underline;
+}
+
diff --git a/docs/html/doxygen.png b/docs/html/doxygen.png
new file mode 100644
index 00000000..3ff17d80
Binary files /dev/null and b/docs/html/doxygen.png differ
diff --git a/docs/html/dynsections.js b/docs/html/dynsections.js
new file mode 100644
index 00000000..ea0a7b39
--- /dev/null
+++ b/docs/html/dynsections.js
@@ -0,0 +1,120 @@
+/*
+ @licstart  The following is the entire license notice for the
+ JavaScript code in this file.
+
+ Copyright (C) 1997-2017 by Dimitri van Heesch
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+ @licend  The above is the entire license notice
+ for the JavaScript code in this file
+ */
+function toggleVisibility(linkObj)
+{
+ var base = $(linkObj).attr('id');
+ var summary = $('#'+base+'-summary');
+ var content = $('#'+base+'-content');
+ var trigger = $('#'+base+'-trigger');
+ var src=$(trigger).attr('src');
+ if (content.is(':visible')===true) {
+   content.hide();
+   summary.show();
+   $(linkObj).addClass('closed').removeClass('opened');
+   $(trigger).attr('src',src.substring(0,src.length-8)+'closed.png');
+ } else {
+   content.show();
+   summary.hide();
+   $(linkObj).removeClass('closed').addClass('opened');
+   $(trigger).attr('src',src.substring(0,src.length-10)+'open.png');
+ }
+ return false;
+}
+
+function updateStripes()
+{
+  $('table.directory tr').
+       removeClass('even').filter(':visible:even').addClass('even');
+}
+
+function toggleLevel(level)
+{
+  $('table.directory tr').each(function() {
+    var l = this.id.split('_').length-1;
+    var i = $('#img'+this.id.substring(3));
+    var a = $('#arr'+this.id.substring(3));
+    if (l<level+1) {
+      i.removeClass('iconfopen iconfclosed').addClass('iconfopen');
+      a.html('&#9660;');
+      $(this).show();
+    } else if (l==level+1) {
+      i.removeClass('iconfclosed iconfopen').addClass('iconfclosed');
+      a.html('&#9658;');
+      $(this).show();
+    } else {
+      $(this).hide();
+    }
+  });
+  updateStripes();
+}
+
+function toggleFolder(id)
+{
+  // the clicked row
+  var currentRow = $('#row_'+id);
+
+  // all rows after the clicked row
+  var rows = currentRow.nextAll("tr");
+
+  var re = new RegExp('^row_'+id+'\\d+_$', "i"); //only one sub
+
+  // only match elements AFTER this one (can't hide elements before)
+  var childRows = rows.filter(function() { return this.id.match(re); });
+
+  // first row is visible we are HIDING
+  if (childRows.filter(':first').is(':visible')===true) {
+    // replace down arrow by right arrow for current row
+    var currentRowSpans = currentRow.find("span");
+    currentRowSpans.filter(".iconfopen").removeClass("iconfopen").addClass("iconfclosed");
+    currentRowSpans.filter(".arrow").html('&#9658;');
+    rows.filter("[id^=row_"+id+"]").hide(); // hide all children
+  } else { // we are SHOWING
+    // replace right arrow by down arrow for current row
+    var currentRowSpans = currentRow.find("span");
+    currentRowSpans.filter(".iconfclosed").removeClass("iconfclosed").addClass("iconfopen");
+    currentRowSpans.filter(".arrow").html('&#9660;');
+    // replace down arrows by right arrows for child rows
+    var childRowsSpans = childRows.find("span");
+    childRowsSpans.filter(".iconfopen").removeClass("iconfopen").addClass("iconfclosed");
+    childRowsSpans.filter(".arrow").html('&#9658;');
+    childRows.show(); //show all children
+  }
+  updateStripes();
+}
+
+
+function toggleInherit(id)
+{
+  var rows = $('tr.inherit.'+id);
+  var img = $('tr.inherit_header.'+id+' img');
+  var src = $(img).attr('src');
+  if (rows.filter(':first').is(':visible')===true) {
+    rows.css('display','none');
+    $(img).attr('src',src.substring(0,src.length-8)+'closed.png');
+  } else {
+    rows.css('display','table-row'); // using show() causes jump in firefox
+    $(img).attr('src',src.substring(0,src.length-10)+'open.png');
+  }
+}
+/* @license-end */
diff --git a/docs/html/enarc__node_8hxx_source.html b/docs/html/enarc__node_8hxx_source.html
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+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
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+</div><!-- top -->
+<div class="header">
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+<div class="title">enarc_node.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_ENARC_NODE_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_ENARC_NODE_HXX</span></div>
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+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
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+<div class="title">enas_dag_node.hxx</div>  </div>
+</div><!--header-->
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_ENAS_DAG_NODE_HXX</span></div>
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+<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;<span class="preprocessor">#endif</span></div>
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+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_a0676683aa9a220611f4e99a8a44e6e96"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#a0676683aa9a220611f4e99a8a44e6e96">ENAS_DAG_Node::print_gradient</a></div><div class="ttdeci">void print_gradient(string gradient_name)</div><div class="ttdoc">Gives the gradients in essence the deriviative of the weights in the memory cell in the network.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.cxx:128</div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_afac6a8241afd3cae5c8d7955e8518c59"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#afac6a8241afd3cae5c8d7955e8518c59">ENAS_DAG_Node::get_gradient</a></div><div class="ttdeci">double get_gradient(string gradient_name)</div><div class="ttdoc">Gives the gradients in essence the deriviative of the weights in the memory cell in the network.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.cxx:96</div></div>
+<div class="ttc" id="apair_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/utility/pair.html">std::pair</a></div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_a4c2c49ca7aed21901ad5d79d3f921459"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#a4c2c49ca7aed21901ad5d79d3f921459">ENAS_DAG_Node::d_rw</a></div><div class="ttdeci">vector&lt; double &gt; d_rw</div><div class="ttdoc">Gradient of the weight of the start node in the memory cell.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.hxx:49</div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_a58e17b40715e32a28a57c2ec34cd1997"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#a58e17b40715e32a28a57c2ec34cd1997">ENAS_DAG_Node::activation</a></div><div class="ttdeci">double activation(double value, int act_operator)</div><div class="ttdoc">Gives the activations of the node in the memory cell in the network.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.cxx:132</div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_ae73d6fdfcaa9f0ae60628e9529c4373d"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#ae73d6fdfcaa9f0ae60628e9529c4373d">ENAS_DAG_Node::activation_derivative</a></div><div class="ttdeci">double activation_derivative(double value, double input, int act_operator)</div><div class="ttdoc">Gives the activations derviative of the node in the memory cell in the network.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.cxx:141</div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
+<div class="ttc" id="aclass_normal_distribution_html"><div class="ttname"><a href="class_normal_distribution.html">NormalDistribution</a></div><div class="ttdef"><b>Definition:</b> random.hxx:19</div></div>
+<div class="ttc" id="auniform_real_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a></div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_a169c584563029fdec7d51390c6bef838"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#a169c584563029fdec7d51390c6bef838">ENAS_DAG_Node::weights</a></div><div class="ttdeci">vector&lt; double &gt; weights</div><div class="ttdoc">Weights of the subseqeuent nodes in topological order the memory cell.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.hxx:39</div></div>
+<div class="ttc" id="abasic_ostream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a></div></div>
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+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_ae96b8e1d3d379d097aff2d879ca25fdb"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#ae96b8e1d3d379d097aff2d879ca25fdb">ENAS_DAG_Node::Nodes</a></div><div class="ttdeci">vector&lt; vector&lt; double &gt; &gt; Nodes</div><div class="ttdoc">Outputs of the nodes in the memory cell connecting with weight wj from node with weight wi.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.hxx:64</div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html">ENAS_DAG_Node</a></div><div class="ttdef"><b>Definition:</b> enas_dag_node.hxx:23</div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_a0b7939ba90a6db0ba2dda9731eefc38a"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#a0b7939ba90a6db0ba2dda9731eefc38a">ENAS_DAG_Node::l_Nodes</a></div><div class="ttdeci">vector&lt; vector&lt; double &gt; &gt; l_Nodes</div><div class="ttdoc">Derivative of the nodes in the memory cell connecting with weight wj from node with weight wi.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.hxx:69</div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_a366df37adbb4bc2824846ef60b6707e3"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#a366df37adbb4bc2824846ef60b6707e3">ENAS_DAG_Node::d_h_prev</a></div><div class="ttdeci">vector&lt; double &gt; d_h_prev</div><div class="ttdoc">Gradient of the previous output i.e.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.hxx:59</div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_a96691f6c8700d1443045691b435db9b4"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#a96691f6c8700d1443045691b435db9b4">ENAS_DAG_Node::rw</a></div><div class="ttdeci">double rw</div><div class="ttdoc">Weight of the start node in the memory cell.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.hxx:29</div></div>
+<div class="ttc" id="amake_pair_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/utility/pair/make_pair.html">std::make_pair</a></div><div class="ttdeci">T make_pair(T... args)</div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_a127cf43bd1e8014d9fb951cf26c9b737"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#a127cf43bd1e8014d9fb951cf26c9b737">ENAS_DAG_Node::d_weights</a></div><div class="ttdeci">vector&lt; vector&lt; double &gt; &gt; d_weights</div><div class="ttdoc">Gradient of the weights of the other nodes in the memory cell.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.hxx:54</div></div>
+<div class="ttc" id="aclass_r_n_n___node___interface_html"><div class="ttname"><a href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></div><div class="ttdef"><b>Definition:</b> rnn_node_interface.hxx:133</div></div>
+<div class="ttc" id="aclass_e_n_a_s___d_a_g___node_html_a6df39cdee9de29977d989383c312afeb"><div class="ttname"><a href="class_e_n_a_s___d_a_g___node.html#a6df39cdee9de29977d989383c312afeb">ENAS_DAG_Node::d_zw</a></div><div class="ttdeci">vector&lt; double &gt; d_zw</div><div class="ttdoc">Gradient of the weight of the start node in the memory cell.</div><div class="ttdef"><b>Definition:</b> enas_dag_node.hxx:45</div></div>
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+<li class="navelem"><a class="el" href="dir_377bcd34c68cb9858f831db88dc7fd3f.html">cnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">exact.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXACT_H</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXACT_H</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;algorithm&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/algorithm/sort.html">std::sort</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_istream.html">std::istream</a>;</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160; </div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &lt;limits&gt;</span></div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/types/numeric_limits.html">std::numeric_limits</a>;</div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160; </div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/normal_distribution.html">std::normal_distribution</a>;</div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">std::uniform_int_distribution</a>;</div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
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+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="preprocessor">#include &quot;cnn_node.hxx&quot;</span></div>
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+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="preprocessor">#include &quot;cnn_genome.hxx&quot;</span></div>
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+<div class="title">examm.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ofstream.html">std::ofstream</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">std::map</a>;</div>
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+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;sstream&gt;</span></div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostringstream.html">std::ostringstream</a>;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
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+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="preprocessor">#include &quot;speciation_strategy.hxx&quot;</span></div>
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+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;        int32_t max_genomes;</div>
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+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;        <span class="keywordtype">string</span> speciation_method;</div>
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+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;        int32_t repopulation_mutations;</div>
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+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;        <span class="keywordtype">double</span> species_threshold;</div>
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+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;        int32_t edge_innovation_count;</div>
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+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160; </div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string, int32_t&gt;</a> inserted_from_map;</div>
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+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;        int32_t number_inputs;</div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;        int32_t number_outputs;</div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;        int32_t bp_iterations;</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;        <span class="keywordtype">double</span> learning_rate;</div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160; </div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;        <span class="keywordtype">bool</span> use_high_threshold;</div>
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+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;        <span class="keywordtype">bool</span> use_low_threshold;</div>
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+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;        <span class="keywordtype">bool</span> use_regression;</div>
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+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160; </div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> generator;</div>
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+<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;                int32_t _islands_to_exterminate,</div>
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+<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;                <span class="keywordtype">bool</span> _repeat_extinction,</div>
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+<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;                <span class="keywordtype">double</span> _fitness_threshold,</div>
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+<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;                <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_maxs,</div>
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+<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;                <span class="keywordtype">bool</span> _use_low_threshold, </div>
+<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;                <span class="keywordtype">double</span> _low_threshold,</div>
+<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;                <span class="keywordtype">bool</span> _use_dropout,</div>
+<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;                <span class="keywordtype">double</span> _dropout_probability,</div>
+<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;                int32_t _min_recurrent_depth,</div>
+<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;                int32_t _max_recurrent_depth,</div>
+<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;                <span class="keywordtype">bool</span> _use_regression,</div>
+<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;                <span class="keywordtype">string</span> _output_directory, </div>
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+<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160; </div>
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+<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160; </div>
+<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;        <span class="keywordtype">void</span> set_possible_node_types(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> possible_node_type_strings);</div>
+<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160; </div>
+<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">uniform_int_distribution&lt;int32_t&gt;</a> get_recurrent_depth_dist();</div>
+<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160; </div>
+<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;        <span class="keywordtype">int</span> get_random_node_type();</div>
+<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160; </div>
+<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* generate_genome();</div>
+<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;        <span class="keywordtype">bool</span> insert_genome(<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* genome);</div>
+<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160; </div>
+<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;        <span class="keywordtype">void</span> mutate(int32_t max_mutations, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *p1);</div>
+<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160; </div>
+<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;        <span class="keywordtype">void</span> attempt_node_insert(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> &amp;child_nodes, <span class="keyword">const</span> <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *node, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;new_weights);</div>
+<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;        <span class="keywordtype">void</span> attempt_edge_insert(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Edge*&gt;</a> &amp;child_edges, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> &amp;child_nodes, <a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> *edge, <a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> *second_edge, <span class="keywordtype">bool</span> set_enabled);</div>
+<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;        <span class="keywordtype">void</span> attempt_recurrent_edge_insert(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Recurrent_Edge*&gt;</a> &amp;child_recurrent_edges, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> &amp;child_nodes, <a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> *recurrent_edge, <a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> *second_edge, <span class="keywordtype">bool</span> set_enabled);</div>
+<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* crossover(<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *p1, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *p2);</div>
+<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160; </div>
+<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;        <span class="keywordtype">double</span> get_best_fitness();</div>
+<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;        <span class="keywordtype">double</span> get_worst_fitness();</div>
+<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* get_best_genome();</div>
+<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* get_worst_genome();</div>
+<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160; </div>
+<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;        <span class="keywordtype">string</span> get_output_directory() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* generate_for_transfer_learning(<span class="keywordtype">string</span> file_name, <span class="keywordtype">int</span> extra_inputs, <span class="keywordtype">int</span> extra_outputs) ;</div>
+<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160; </div>
+<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;        <span class="keywordtype">void</span> check_weight_initialize_validity();</div>
+<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;};</div>
+<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160; </div>
+<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="auniform_int_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">std::uniform_int_distribution</a></div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_r_n_n___recurrent___edge_html"><div class="ttname"><a href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_recurrent_edge.hxx:8</div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
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+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_b"></a>- b -</h3><ul>
+<li>batch_size
+: <a class="el" href="class_corpus.html#aaf5714da66d6475437fdae9fe262bb6a">Corpus</a>
+</li>
+<li>been_erased()
+: <a class="el" href="class_island.html#abb653cd2fc60819a0ab2c204930a7e8a">Island</a>
+</li>
+<li>best_validation_mse
+: <a class="el" href="class_r_n_n___genome.html#a41ba624f5a9311ee8ef0803ae6063156">RNN_Genome</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_c.html b/docs/html/functions_c.html
new file mode 100644
index 00000000..ebef142a
--- /dev/null
+++ b/docs/html/functions_c.html
@@ -0,0 +1,105 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_c"></a>- c -</h3><ul>
+<li>calculate_error_softmax()
+: <a class="el" href="class_r_n_n.html#aa5fb8d612f560a05bfa188453578c1a2">RNN</a>
+</li>
+<li>cbegin()
+: <a class="el" href="classmin__max__heap.html#a42e3ecf3ab992eddf731bba3cdd5ce9d">min_max_heap&lt; T &gt;</a>
+</li>
+<li>cend()
+: <a class="el" href="classmin__max__heap.html#afeaa2d61f64081af3645044292dac605">min_max_heap&lt; T &gt;</a>
+</li>
+<li>clear()
+: <a class="el" href="classmin__max__heap.html#a7bc015a4db5cc82870e23732e0b01c60">min_max_heap&lt; T &gt;</a>
+</li>
+<li>clear_rank_restriction()
+: <a class="el" href="class_log.html#a1cecca268a9c418480a0ac325303f7a0">Log</a>
+</li>
+<li>CNN_Genome()
+: <a class="el" href="class_c_n_n___genome.html#ae18524655bb0300fe3668d865d5c0df6">CNN_Genome</a>
+</li>
+<li>contains()
+: <a class="el" href="class_species.html#aac66b182441d124023b4df1167c7bc35">Species</a>
+</li>
+<li>copy_random_genome()
+: <a class="el" href="class_island.html#a7c3b5331a7ee1dff6206a855e6b5c8b8">Island</a>
+, <a class="el" href="class_species.html#add70418d8b64a815998e66c89824d646">Species</a>
+</li>
+<li>copy_two_random_genomes()
+: <a class="el" href="class_island.html#ac49713b90f9110f52c5083540448df8d">Island</a>
+, <a class="el" href="class_species.html#a1f3a1b23040cc266a8c9e49436f0c8a7">Species</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_d.html b/docs/html/functions_d.html
new file mode 100644
index 00000000..f50c41c8
--- /dev/null
+++ b/docs/html/functions_d.html
@@ -0,0 +1,97 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_d"></a>- d -</h3><ul>
+<li>d_h_prev
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a366df37adbb4bc2824846ef60b6707e3">ENAS_DAG_Node</a>
+</li>
+<li>d_rw
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a4c2c49ca7aed21901ad5d79d3f921459">ENAS_DAG_Node</a>
+</li>
+<li>d_weights
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a127cf43bd1e8014d9fb951cf26c9b737">ENAS_DAG_Node</a>
+</li>
+<li>d_zw
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a6df39cdee9de29977d989383c312afeb">ENAS_DAG_Node</a>
+</li>
+<li>debug()
+: <a class="el" href="class_log.html#a044ee1254485cb519d0576dc71103f0a">Log</a>
+</li>
+<li>DEBUG
+: <a class="el" href="class_log.html#addf4eb67a84c9ee39ed3028005f25e40">Log</a>
+</li>
+<li>debug_no_header()
+: <a class="el" href="class_log.html#a6c4b9de38585df6c03defcbe0e420268">Log</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_e.html b/docs/html/functions_e.html
new file mode 100644
index 00000000..1c14f03f
--- /dev/null
+++ b/docs/html/functions_e.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_e"></a>- e -</h3><ul>
+<li>enqueue()
+: <a class="el" href="classmin__max__heap.html#af3daad04ceab28dbd8f262c251925a9d">min_max_heap&lt; T &gt;</a>
+</li>
+<li>erase()
+: <a class="el" href="classmin__max__heap.html#a3296e9f6f5b4eab2818d0ae9f8510e06">min_max_heap&lt; T &gt;</a>
+</li>
+<li>erase_again
+: <a class="el" href="class_island.html#ae46bdcec5ad489d18a4bbd9f22d9cabc">Island</a>
+</li>
+<li>erase_island()
+: <a class="el" href="class_island.html#a733a2accb72bce21194747fd3c1ee819">Island</a>
+</li>
+<li>erased
+: <a class="el" href="class_island.html#aa676d36c51b69868c42d08fbcf6733c8">Island</a>
+</li>
+<li>erased_generation_id
+: <a class="el" href="class_island.html#a054b583b4364d07d8c7819daf9bcdb47">Island</a>
+</li>
+<li>ERROR
+: <a class="el" href="class_log.html#af3c3afdba50a451fd24b6014a9f6e427">Log</a>
+</li>
+<li>error()
+: <a class="el" href="class_log.html#a89f6eebb445913e66423614839225db2">Log</a>
+</li>
+<li>error_no_header()
+: <a class="el" href="class_log.html#ac3e898dc093679bb7d1e3a3f98872158">Log</a>
+</li>
+<li>export_series_by_name()
+: <a class="el" href="class_time_series_sets.html#a2ee946c4092fa81d3dc2cbf4c65b3388">TimeSeriesSets</a>
+</li>
+<li>export_test_series()
+: <a class="el" href="class_corpus.html#a1559311071b5de22e15561a39225ec12">Corpus</a>
+, <a class="el" href="class_time_series_sets.html#a45b61a73ae84cdafce66a10dd9930534">TimeSeriesSets</a>
+</li>
+<li>export_time_series()
+: <a class="el" href="class_time_series_set.html#ad85e413579132f448ec10545f733d452">TimeSeriesSet</a>
+, <a class="el" href="class_time_series_sets.html#a5c8ac2daba0424ae774be8c9bee789b6">TimeSeriesSets</a>
+</li>
+<li>export_training_series()
+: <a class="el" href="class_corpus.html#a241439045ad1a83d6104b4350961e1b3">Corpus</a>
+, <a class="el" href="class_time_series_sets.html#af7b9f9319c330cb6af8475ce1c2aa545">TimeSeriesSets</a>
+</li>
+<li>extinction_event_generation_number
+: <a class="el" href="class_island_speciation_strategy.html#acf9f4b165c831eada8b46224eab05443">IslandSpeciationStrategy</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_f.html b/docs/html/functions_f.html
new file mode 100644
index 00000000..2951eecc
--- /dev/null
+++ b/docs/html/functions_f.html
@@ -0,0 +1,100 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_f"></a>- f -</h3><ul>
+<li>fatal()
+: <a class="el" href="class_log.html#a805517b44b61d2b5151a2f4794596a7e">Log</a>
+</li>
+<li>FATAL
+: <a class="el" href="class_log.html#a829c89b207740611e743a6e2f07e477f">Log</a>
+</li>
+<li>fatal_no_header()
+: <a class="el" href="class_log.html#ad2850dbb9d26c84c3fc2bcecc93493d6">Log</a>
+</li>
+<li>file_message_level
+: <a class="el" href="class_log.html#a08b261dd43ff89110e602a3a61f6ec61">Log</a>
+</li>
+<li>filename
+: <a class="el" href="class_sentence_series.html#a71ecf2220dbde9a683361a418fd79caa">SentenceSeries</a>
+</li>
+<li>filenames
+: <a class="el" href="class_corpus.html#acdc26dc71f4664b914bc6f4ddd08f5c7">Corpus</a>
+</li>
+<li>fill_island()
+: <a class="el" href="class_island_speciation_strategy.html#aea495f09600ae8ab003e67957d174814">IslandSpeciationStrategy</a>
+</li>
+<li>FILLED
+: <a class="el" href="class_island.html#a857212729b8405e77721f499d0b85513">Island</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_func.html b/docs/html/functions_func.html
new file mode 100644
index 00000000..fd1a3b28
--- /dev/null
+++ b/docs/html/functions_func.html
@@ -0,0 +1,445 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members - Functions</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+&#160;
+
+<h3><a id="index__5F"></a>- _ -</h3><ul>
+<li>__init__()
+: <a class="el" href="classconfig__to__arg_1_1_config_to_arg.html#a0423918c5ac9ce0372cc30c72ae803aa">config_to_arg.ConfigToArg</a>
+</li>
+</ul>
+
+
+<h3><a id="index_a"></a>- a -</h3><ul>
+<li>activation()
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a58e17b40715e32a28a57c2ec34cd1997">ENAS_DAG_Node</a>
+</li>
+<li>activation_derivative()
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#ae73d6fdfcaa9f0ae60628e9529c4373d">ENAS_DAG_Node</a>
+</li>
+<li>at_level()
+: <a class="el" href="class_log.html#afdfbb3c30e059607ccf10a6ef5e0de9a">Log</a>
+</li>
+</ul>
+
+
+<h3><a id="index_b"></a>- b -</h3><ul>
+<li>been_erased()
+: <a class="el" href="class_island.html#abb653cd2fc60819a0ab2c204930a7e8a">Island</a>
+</li>
+</ul>
+
+
+<h3><a id="index_c"></a>- c -</h3><ul>
+<li>calculate_error_softmax()
+: <a class="el" href="class_r_n_n.html#aa5fb8d612f560a05bfa188453578c1a2">RNN</a>
+</li>
+<li>cbegin()
+: <a class="el" href="classmin__max__heap.html#a42e3ecf3ab992eddf731bba3cdd5ce9d">min_max_heap&lt; T &gt;</a>
+</li>
+<li>cend()
+: <a class="el" href="classmin__max__heap.html#afeaa2d61f64081af3645044292dac605">min_max_heap&lt; T &gt;</a>
+</li>
+<li>clear()
+: <a class="el" href="classmin__max__heap.html#a7bc015a4db5cc82870e23732e0b01c60">min_max_heap&lt; T &gt;</a>
+</li>
+<li>clear_rank_restriction()
+: <a class="el" href="class_log.html#a1cecca268a9c418480a0ac325303f7a0">Log</a>
+</li>
+<li>CNN_Genome()
+: <a class="el" href="class_c_n_n___genome.html#ae18524655bb0300fe3668d865d5c0df6">CNN_Genome</a>
+</li>
+<li>contains()
+: <a class="el" href="class_species.html#aac66b182441d124023b4df1167c7bc35">Species</a>
+</li>
+<li>copy_random_genome()
+: <a class="el" href="class_island.html#a7c3b5331a7ee1dff6206a855e6b5c8b8">Island</a>
+, <a class="el" href="class_species.html#add70418d8b64a815998e66c89824d646">Species</a>
+</li>
+<li>copy_two_random_genomes()
+: <a class="el" href="class_island.html#ac49713b90f9110f52c5083540448df8d">Island</a>
+, <a class="el" href="class_species.html#a1f3a1b23040cc266a8c9e49436f0c8a7">Species</a>
+</li>
+</ul>
+
+
+<h3><a id="index_d"></a>- d -</h3><ul>
+<li>debug()
+: <a class="el" href="class_log.html#a044ee1254485cb519d0576dc71103f0a">Log</a>
+</li>
+<li>debug_no_header()
+: <a class="el" href="class_log.html#a6c4b9de38585df6c03defcbe0e420268">Log</a>
+</li>
+</ul>
+
+
+<h3><a id="index_e"></a>- e -</h3><ul>
+<li>enqueue()
+: <a class="el" href="classmin__max__heap.html#af3daad04ceab28dbd8f262c251925a9d">min_max_heap&lt; T &gt;</a>
+</li>
+<li>erase()
+: <a class="el" href="classmin__max__heap.html#a3296e9f6f5b4eab2818d0ae9f8510e06">min_max_heap&lt; T &gt;</a>
+</li>
+<li>erase_island()
+: <a class="el" href="class_island.html#a733a2accb72bce21194747fd3c1ee819">Island</a>
+</li>
+<li>error()
+: <a class="el" href="class_log.html#a89f6eebb445913e66423614839225db2">Log</a>
+</li>
+<li>error_no_header()
+: <a class="el" href="class_log.html#ac3e898dc093679bb7d1e3a3f98872158">Log</a>
+</li>
+<li>export_series_by_name()
+: <a class="el" href="class_time_series_sets.html#a2ee946c4092fa81d3dc2cbf4c65b3388">TimeSeriesSets</a>
+</li>
+<li>export_test_series()
+: <a class="el" href="class_corpus.html#a1559311071b5de22e15561a39225ec12">Corpus</a>
+, <a class="el" href="class_time_series_sets.html#a45b61a73ae84cdafce66a10dd9930534">TimeSeriesSets</a>
+</li>
+<li>export_time_series()
+: <a class="el" href="class_time_series_set.html#ad85e413579132f448ec10545f733d452">TimeSeriesSet</a>
+, <a class="el" href="class_time_series_sets.html#a5c8ac2daba0424ae774be8c9bee789b6">TimeSeriesSets</a>
+</li>
+<li>export_training_series()
+: <a class="el" href="class_corpus.html#a241439045ad1a83d6104b4350961e1b3">Corpus</a>
+, <a class="el" href="class_time_series_sets.html#af7b9f9319c330cb6af8475ce1c2aa545">TimeSeriesSets</a>
+</li>
+</ul>
+
+
+<h3><a id="index_f"></a>- f -</h3><ul>
+<li>fatal()
+: <a class="el" href="class_log.html#a805517b44b61d2b5151a2f4794596a7e">Log</a>
+</li>
+<li>fatal_no_header()
+: <a class="el" href="class_log.html#ad2850dbb9d26c84c3fc2bcecc93493d6">Log</a>
+</li>
+<li>fill_island()
+: <a class="el" href="class_island_speciation_strategy.html#aea495f09600ae8ab003e67957d174814">IslandSpeciationStrategy</a>
+</li>
+</ul>
+
+
+<h3><a id="index_g"></a>- g -</h3><ul>
+<li>generate_genome()
+: <a class="el" href="class_island_speciation_strategy.html#a1d209dc38c374ffcb8ac7c34f72b2ce9">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#ae86f8696ddab1b6cc595b6e2ef0371ae">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a76f36f0dd7c47727aef912d48f0fa26b">SpeciationStrategy</a>
+</li>
+<li>get_analytic_gradient()
+: <a class="el" href="class_r_n_n.html#aad5f51508b5cb978a6343e3234bb8892">RNN</a>
+</li>
+<li>get_best_fitness()
+: <a class="el" href="class_island.html#aea94baab5d4faa09454131236baf187c">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a4db5c946c86373cf256177b35553b808">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#afa3f2d35da2172a32ed06588ef09d4d0">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a2e3034b48d9ed1f263128ffc8ca3a295">Species</a>
+</li>
+<li>get_best_genome()
+: <a class="el" href="class_island.html#abf327f29018863338f4eb351c1f4a2c8">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a1a8a770c165b22a5070e11a3f579375e">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aecf62aeba94c1f8d786215c10ea4774b">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#ad0796098d09c25bfee14d9f264bcba2d">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a01dcea3ec17810b46167e751b2e6f4cf">Species</a>
+</li>
+<li>get_erased_generation_id()
+: <a class="el" href="class_island.html#acb96603328b5dff91b41470424e7494e">Island</a>
+</li>
+<li>get_fitness()
+: <a class="el" href="class_r_n_n___genome.html#a38239d73966179c24fc12254810b31ad">RNN_Genome</a>
+</li>
+<li>get_generated_genomes()
+: <a class="el" href="class_island_speciation_strategy.html#a2b75aca60616268e4a6aee93ee4e5aee">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#af7e48fd1afb5a9c1b422ad251366263e">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a7699a7050ed5a66693f19e834e9ba082">SpeciationStrategy</a>
+</li>
+<li>get_gradient()
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#afac6a8241afd3cae5c8d7955e8518c59">ENAS_DAG_Node</a>
+</li>
+<li>get_inserted_genomes()
+: <a class="el" href="class_island_speciation_strategy.html#ab44e2abd372cd97932dd87ed1b9c62c2">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aba55a9f0006af882fd613bd0676555eb">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a1f07309130568d8cc79da44c8da6ca69">SpeciationStrategy</a>
+</li>
+<li>get_max_edge_innovation_count()
+: <a class="el" href="class_r_n_n___genome.html#aaffc30ae458b6dcf16a0e7484ca7bcfc">RNN_Genome</a>
+</li>
+<li>get_max_node_innovation_count()
+: <a class="el" href="class_r_n_n___genome.html#ae504f790ddce6366e49a4892b86e12cb">RNN_Genome</a>
+</li>
+<li>get_max_size()
+: <a class="el" href="class_island.html#ac5cae801aac1403f3523a7949e415417">Island</a>
+</li>
+<li>get_random_genome()
+: <a class="el" href="class_species.html#afceb50adb6350b2576e897c30380fee5">Species</a>
+</li>
+<li>get_softmax()
+: <a class="el" href="class_r_n_n___genome.html#a8f267b82d174d4a10bd48049e025a99b">RNN_Genome</a>
+</li>
+<li>get_status()
+: <a class="el" href="class_island.html#a8c941beca36c75f2c4fc2fd0d2dfc2c5">Island</a>
+</li>
+<li>get_strategy_information_headers()
+: <a class="el" href="class_island_speciation_strategy.html#ae578a7475f4825a7fa7fbf70738070c5">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a0117c886c0aedbb22e8f4ee6803ab669">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a163f199bc1dbf37157942cd3778cca20">SpeciationStrategy</a>
+</li>
+<li>get_strategy_information_values()
+: <a class="el" href="class_island_speciation_strategy.html#a2b29208908a8a27a5693e27401790a97">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a3f5175b016921853c2e9461475bff164">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a5c6bbff0c19e3d347cef936d7b357fc0">SpeciationStrategy</a>
+</li>
+<li>get_structural_hash()
+: <a class="el" href="class_r_n_n___genome.html#a280b5a80c457fd341fe82ec9cc930d01">RNN_Genome</a>
+</li>
+<li>get_worst_fitness()
+: <a class="el" href="class_island.html#ac135f9b252512f04afcd7f8c2f3f621f">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a516627db390391867d6dd02f78e27caf">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#acbd3eaa05db725de60074276cd0bb449">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a6bdef578fe33c628a81db35d75eaa473">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a10669846e7646b47696d90838e379a94">Species</a>
+</li>
+<li>get_worst_genome()
+: <a class="el" href="class_island.html#a2f5d1d504a6bc11d0d63cf9d4bea5a63">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a563860351e5f176d539bc297949d490f">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a8bc6ad6a0740e2f6072aef3ad14dd3f7">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#ae84e9c1e0eaf02886b41b1d9adf488f4">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a0a224a20baa5eb5055dada490c738d30">Species</a>
+</li>
+<li>get_worst_island_by_best_genome()
+: <a class="el" href="class_island_speciation_strategy.html#a4103cc2b64eb18788c8c32118094645a">IslandSpeciationStrategy</a>
+</li>
+</ul>
+
+
+<h3><a id="index_h"></a>- h -</h3><ul>
+<li>has_node_with_innovation()
+: <a class="el" href="class_r_n_n___genome.html#a8d67b0d3f328bfc4a8dd459a61fb1cf3">RNN_Genome</a>
+</li>
+</ul>
+
+
+<h3><a id="index_i"></a>- i -</h3><ul>
+<li>info()
+: <a class="el" href="class_log.html#adb225c396180e0d8f73580e71eae6554">Log</a>
+</li>
+<li>info_no_header()
+: <a class="el" href="class_log.html#a4b4380a986ebf18e448221d78a236bc3">Log</a>
+</li>
+<li>initialize()
+: <a class="el" href="class_log.html#afc35697517d849ab8cf4a774d2b32ba8">Log</a>
+</li>
+<li>insert_genome()
+: <a class="el" href="class_island.html#a105174354a7313b3c6520892a3de653e">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a6ae98982d01c68214e4bd703fe18146f">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aa2b2521a400435cbd1856aadda2051e0">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a1fd87178f38052aa934312e49819e509">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a459a9676c5c86837233c6cc4c3843475">Species</a>
+</li>
+<li>is_full()
+: <a class="el" href="class_island.html#a42a519a1626c5db6004173529a5e2627">Island</a>
+</li>
+<li>is_initializing()
+: <a class="el" href="class_island.html#a4d7e730b2c3e9cc53ae3205b1fbe2930">Island</a>
+</li>
+<li>is_repopulating()
+: <a class="el" href="class_island.html#a79525b52b34ef3674b837072b5d34d19">Island</a>
+</li>
+<li>Island()
+: <a class="el" href="class_island.html#a32f068675c8a7f999cb18464d00e8119">Island</a>
+</li>
+<li>islands_full()
+: <a class="el" href="class_island_speciation_strategy.html#a57d264f45976d729bfb0a59129e1fd5a">IslandSpeciationStrategy</a>
+</li>
+<li>IslandSpeciationStrategy()
+: <a class="el" href="class_island_speciation_strategy.html#a62a9572d5d379edd35bda87dc81b335d">IslandSpeciationStrategy</a>
+</li>
+</ul>
+
+
+<h3><a id="index_l"></a>- l -</h3><ul>
+<li>load_word_library()
+: <a class="el" href="class_corpus.html#aef1a06e5a764a0ffa2ecc8b4df042692">Corpus</a>
+</li>
+</ul>
+
+
+<h3><a id="index_m"></a>- m -</h3><ul>
+<li>min_max_heap()
+: <a class="el" href="classmin__max__heap.html#a8150a4c81beed0795529f923cdc57751">min_max_heap&lt; T &gt;</a>
+</li>
+</ul>
+
+
+<h3><a id="index_o"></a>- o -</h3><ul>
+<li>operator[]()
+: <a class="el" href="classmin__max__heap.html#a296ebbc3fe939b962f339d62aff83d15">min_max_heap&lt; T &gt;</a>
+</li>
+</ul>
+
+
+<h3><a id="index_p"></a>- p -</h3><ul>
+<li>parents_repopulation()
+: <a class="el" href="class_island_speciation_strategy.html#aa26da7c800d7ab2b1299554a490deb4c">IslandSpeciationStrategy</a>
+</li>
+<li>parse_level_from_string()
+: <a class="el" href="class_log.html#a92a5eb55bc8e480aa984d6d592f07d69">Log</a>
+</li>
+<li>pop_max()
+: <a class="el" href="classmin__max__heap.html#a9184c94f7909bc98b6097cad8a49f4bc">min_max_heap&lt; T &gt;</a>
+</li>
+<li>pop_min()
+: <a class="el" href="classmin__max__heap.html#aa80b1443a03ec6c6f63382b8d93a4b11">min_max_heap&lt; T &gt;</a>
+</li>
+<li>prediction_softmax()
+: <a class="el" href="class_r_n_n.html#a7245cfe333987f29d59dd1c1442391ec">RNN</a>
+</li>
+<li>print()
+: <a class="el" href="class_island.html#a9d092c81f7d97c72972dfbdf6fb7cb14">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a4ba6785df117932f3c465cbc31a5ca3f">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#abef17e0293c2e0a64b3b4b3b9b7775d2">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a1d44f4c87ab00182e61f0fb364f274a9">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a2e9e0780d547c253c8532b5866b7bd4d">Species</a>
+</li>
+<li>print_gradient()
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a0676683aa9a220611f4e99a8a44e6e96">ENAS_DAG_Node</a>
+</li>
+</ul>
+
+
+<h3><a id="index_r"></a>- r -</h3><ul>
+<li>rank_islands()
+: <a class="el" href="class_island_speciation_strategy.html#a4dc7a8138b13b6ca22acbe9038e90ae4">IslandSpeciationStrategy</a>
+</li>
+<li>register_command_line_arguments()
+: <a class="el" href="class_log.html#a1e95d22090ba14b096609c67487f9761">Log</a>
+</li>
+<li>release_id()
+: <a class="el" href="class_log.html#aecae136e87aadf153c98f4f1f92ac44f">Log</a>
+</li>
+<li>reserve()
+: <a class="el" href="classmin__max__heap.html#a962166c243c1a1278b41b59d397a5189">min_max_heap&lt; T &gt;</a>
+</li>
+<li>restrict_to_rank()
+: <a class="el" href="class_log.html#a4718a27c58db20d66ac3c511931d475b">Log</a>
+</li>
+</ul>
+
+
+<h3><a id="index_s"></a>- s -</h3><ul>
+<li>set_id()
+: <a class="el" href="class_log.html#ac02fea24138d69a35521d82ee64bb90d">Log</a>
+</li>
+<li>set_rank()
+: <a class="el" href="class_log.html#a6183417026fe34b0d1494f1504b52b8f">Log</a>
+</li>
+<li>set_status()
+: <a class="el" href="class_island.html#abee9ebff7f0da46fa3dde1718f675689">Island</a>
+</li>
+<li>size()
+: <a class="el" href="class_island.html#a41f743dc56fa3c26f1e709222416cadf">Island</a>
+, <a class="el" href="class_species.html#af9978e8876f3d43c5238225ad7b8de34">Species</a>
+</li>
+<li>Species()
+: <a class="el" href="class_species.html#a58b75aebb5ad400b89cb41e5d7700092">Species</a>
+</li>
+</ul>
+
+
+<h3><a id="index_t"></a>- t -</h3><ul>
+<li>trace()
+: <a class="el" href="class_log.html#ad0d504bc7f5957a814e9de5ea08f982a">Log</a>
+</li>
+<li>trace_no_header()
+: <a class="el" href="class_log.html#a5eca5217a6fc23a54cff35ff12ad04f6">Log</a>
+</li>
+</ul>
+
+
+<h3><a id="index_w"></a>- w -</h3><ul>
+<li>warning()
+: <a class="el" href="class_log.html#a477d1ab8cce3a2ef12cb8006fa3c6bf5">Log</a>
+</li>
+<li>warning_no_header()
+: <a class="el" href="class_log.html#a9bbfa4b8f4fb2262d914f00ba04dd6c6">Log</a>
+</li>
+<li>write_message()
+: <a class="el" href="class_log.html#aff6a4531e693fd53ad051c7fef28c6aa">Log</a>
+</li>
+<li>write_predictions()
+: <a class="el" href="class_r_n_n___genome.html#a99769540d03c292a1e63bd753ae58ceb">RNN_Genome</a>
+</li>
+<li>write_sentence_series_sets()
+: <a class="el" href="class_corpus.html#a45ee2e625bab4930a20b8448d0e168b0">Corpus</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_g.html b/docs/html/functions_g.html
new file mode 100644
index 00000000..a6957161
--- /dev/null
+++ b/docs/html/functions_g.html
@@ -0,0 +1,179 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_g"></a>- g -</h3><ul>
+<li>generate_genome()
+: <a class="el" href="class_island_speciation_strategy.html#a1d209dc38c374ffcb8ac7c34f72b2ce9">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#ae86f8696ddab1b6cc595b6e2ef0371ae">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a76f36f0dd7c47727aef912d48f0fa26b">SpeciationStrategy</a>
+</li>
+<li>generated_genomes
+: <a class="el" href="class_island_speciation_strategy.html#a0878978f59055a4a5a7aa54dc4b905a3">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aa2ecd78ba30f3cc72d2bf1367d5899bc">NeatSpeciationStrategy</a>
+</li>
+<li>generation_island
+: <a class="el" href="class_island_speciation_strategy.html#aab18708f4ad07f725782234e31ee011f">IslandSpeciationStrategy</a>
+</li>
+<li>generation_species
+: <a class="el" href="class_neat_speciation_strategy.html#a8c33c9c76990e80839167c2791773bfd">NeatSpeciationStrategy</a>
+</li>
+<li>genomes
+: <a class="el" href="class_island.html#a41c1201d69104c49438c97dbc8c93db2">Island</a>
+, <a class="el" href="class_species.html#a6b156c1f48620bc39bc9efe6c9324e81">Species</a>
+</li>
+<li>get_analytic_gradient()
+: <a class="el" href="class_r_n_n.html#aad5f51508b5cb978a6343e3234bb8892">RNN</a>
+</li>
+<li>get_best_fitness()
+: <a class="el" href="class_island.html#aea94baab5d4faa09454131236baf187c">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a4db5c946c86373cf256177b35553b808">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#afa3f2d35da2172a32ed06588ef09d4d0">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a2e3034b48d9ed1f263128ffc8ca3a295">Species</a>
+</li>
+<li>get_best_genome()
+: <a class="el" href="class_island.html#abf327f29018863338f4eb351c1f4a2c8">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a1a8a770c165b22a5070e11a3f579375e">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aecf62aeba94c1f8d786215c10ea4774b">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#ad0796098d09c25bfee14d9f264bcba2d">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a01dcea3ec17810b46167e751b2e6f4cf">Species</a>
+</li>
+<li>get_erased_generation_id()
+: <a class="el" href="class_island.html#acb96603328b5dff91b41470424e7494e">Island</a>
+</li>
+<li>get_fitness()
+: <a class="el" href="class_r_n_n___genome.html#a38239d73966179c24fc12254810b31ad">RNN_Genome</a>
+</li>
+<li>get_generated_genomes()
+: <a class="el" href="class_island_speciation_strategy.html#a2b75aca60616268e4a6aee93ee4e5aee">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#af7e48fd1afb5a9c1b422ad251366263e">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a7699a7050ed5a66693f19e834e9ba082">SpeciationStrategy</a>
+</li>
+<li>get_gradient()
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#afac6a8241afd3cae5c8d7955e8518c59">ENAS_DAG_Node</a>
+</li>
+<li>get_inserted_genomes()
+: <a class="el" href="class_island_speciation_strategy.html#ab44e2abd372cd97932dd87ed1b9c62c2">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aba55a9f0006af882fd613bd0676555eb">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a1f07309130568d8cc79da44c8da6ca69">SpeciationStrategy</a>
+</li>
+<li>get_max_edge_innovation_count()
+: <a class="el" href="class_r_n_n___genome.html#aaffc30ae458b6dcf16a0e7484ca7bcfc">RNN_Genome</a>
+</li>
+<li>get_max_node_innovation_count()
+: <a class="el" href="class_r_n_n___genome.html#ae504f790ddce6366e49a4892b86e12cb">RNN_Genome</a>
+</li>
+<li>get_max_size()
+: <a class="el" href="class_island.html#ac5cae801aac1403f3523a7949e415417">Island</a>
+</li>
+<li>get_random_genome()
+: <a class="el" href="class_species.html#afceb50adb6350b2576e897c30380fee5">Species</a>
+</li>
+<li>get_softmax()
+: <a class="el" href="class_r_n_n___genome.html#a8f267b82d174d4a10bd48049e025a99b">RNN_Genome</a>
+</li>
+<li>get_status()
+: <a class="el" href="class_island.html#a8c941beca36c75f2c4fc2fd0d2dfc2c5">Island</a>
+</li>
+<li>get_strategy_information_headers()
+: <a class="el" href="class_island_speciation_strategy.html#ae578a7475f4825a7fa7fbf70738070c5">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a0117c886c0aedbb22e8f4ee6803ab669">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a163f199bc1dbf37157942cd3778cca20">SpeciationStrategy</a>
+</li>
+<li>get_strategy_information_values()
+: <a class="el" href="class_island_speciation_strategy.html#a2b29208908a8a27a5693e27401790a97">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a3f5175b016921853c2e9461475bff164">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a5c6bbff0c19e3d347cef936d7b357fc0">SpeciationStrategy</a>
+</li>
+<li>get_structural_hash()
+: <a class="el" href="class_r_n_n___genome.html#a280b5a80c457fd341fe82ec9cc930d01">RNN_Genome</a>
+</li>
+<li>get_worst_fitness()
+: <a class="el" href="class_island.html#ac135f9b252512f04afcd7f8c2f3f621f">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a516627db390391867d6dd02f78e27caf">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#acbd3eaa05db725de60074276cd0bb449">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a6bdef578fe33c628a81db35d75eaa473">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a10669846e7646b47696d90838e379a94">Species</a>
+</li>
+<li>get_worst_genome()
+: <a class="el" href="class_island.html#a2f5d1d504a6bc11d0d63cf9d4bea5a63">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a563860351e5f176d539bc297949d490f">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a8bc6ad6a0740e2f6072aef3ad14dd3f7">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#ae84e9c1e0eaf02886b41b1d9adf488f4">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a0a224a20baa5eb5055dada490c738d30">Species</a>
+</li>
+<li>get_worst_island_by_best_genome()
+: <a class="el" href="class_island_speciation_strategy.html#a4103cc2b64eb18788c8c32118094645a">IslandSpeciationStrategy</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_h.html b/docs/html/functions_h.html
new file mode 100644
index 00000000..efe7391a
--- /dev/null
+++ b/docs/html/functions_h.html
@@ -0,0 +1,79 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_h"></a>- h -</h3><ul>
+<li>has_node_with_innovation()
+: <a class="el" href="class_r_n_n___genome.html#a8d67b0d3f328bfc4a8dd459a61fb1cf3">RNN_Genome</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_i.html b/docs/html/functions_i.html
new file mode 100644
index 00000000..e07b643a
--- /dev/null
+++ b/docs/html/functions_i.html
@@ -0,0 +1,144 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_i"></a>- i -</h3><ul>
+<li>id
+: <a class="el" href="class_island.html#a859a134cc183618af109dd69b85f2955">Island</a>
+, <a class="el" href="class_species.html#a2e22624d59864dbecd5ee16103b458bd">Species</a>
+</li>
+<li>INFO
+: <a class="el" href="class_log.html#a70efafdaaf797f644bb24a8e1c7f5643">Log</a>
+</li>
+<li>info()
+: <a class="el" href="class_log.html#adb225c396180e0d8f73580e71eae6554">Log</a>
+</li>
+<li>info_no_header()
+: <a class="el" href="class_log.html#a4b4380a986ebf18e448221d78a236bc3">Log</a>
+</li>
+<li>initialize()
+: <a class="el" href="class_log.html#afc35697517d849ab8cf4a774d2b32ba8">Log</a>
+</li>
+<li>INITIALIZING
+: <a class="el" href="class_island.html#acb98955eb9f69a25c7e3af81f4d5cc5c">Island</a>
+</li>
+<li>input_parameter_names
+: <a class="el" href="class_corpus.html#a21a1934fd5493a82fc572226639525c6">Corpus</a>
+</li>
+<li>insert_genome()
+: <a class="el" href="class_island.html#a105174354a7313b3c6520892a3de653e">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a6ae98982d01c68214e4bd703fe18146f">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aa2b2521a400435cbd1856aadda2051e0">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a1fd87178f38052aa934312e49819e509">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a459a9676c5c86837233c6cc4c3843475">Species</a>
+</li>
+<li>inserted_genomes
+: <a class="el" href="class_island_speciation_strategy.html#af5d118e77d6c24c328f8d477f776f15e">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a863ed8485d76c0a036f7a533148888e8">NeatSpeciationStrategy</a>
+</li>
+<li>inter_island_crossover_rate
+: <a class="el" href="class_island_speciation_strategy.html#af4c685f5be866da1bb4395506aec112e">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#ae407ee52a926c60746041987e60f1ecd">NeatSpeciationStrategy</a>
+</li>
+<li>intra_island_crossover_rate
+: <a class="el" href="class_island_speciation_strategy.html#a60bc752d6262d42b1dd294d8c4da563d">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#ae212edf21f96938c934ad7f824f5d4d7">NeatSpeciationStrategy</a>
+</li>
+<li>is_full()
+: <a class="el" href="class_island.html#a42a519a1626c5db6004173529a5e2627">Island</a>
+</li>
+<li>is_initializing()
+: <a class="el" href="class_island.html#a4d7e730b2c3e9cc53ae3205b1fbe2930">Island</a>
+</li>
+<li>is_repopulating()
+: <a class="el" href="class_island.html#a79525b52b34ef3674b837072b5d34d19">Island</a>
+</li>
+<li>Island()
+: <a class="el" href="class_island.html#a32f068675c8a7f999cb18464d00e8119">Island</a>
+</li>
+<li>island_ranking_method
+: <a class="el" href="class_island_speciation_strategy.html#a2e62f197c3bcc0d40369ac7a7ea9ed31">IslandSpeciationStrategy</a>
+</li>
+<li>islands
+: <a class="el" href="class_island_speciation_strategy.html#a51947f81a70302a029b332b6d097beda">IslandSpeciationStrategy</a>
+</li>
+<li>islands_full()
+: <a class="el" href="class_island_speciation_strategy.html#a57d264f45976d729bfb0a59129e1fd5a">IslandSpeciationStrategy</a>
+</li>
+<li>islands_to_exterminate
+: <a class="el" href="class_island_speciation_strategy.html#a51a285855bc78f42965b8d68a6e36257">IslandSpeciationStrategy</a>
+</li>
+<li>IslandSpeciationStrategy()
+: <a class="el" href="class_island_speciation_strategy.html#a62a9572d5d379edd35bda87dc81b335d">IslandSpeciationStrategy</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_l.html b/docs/html/functions_l.html
new file mode 100644
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--- /dev/null
+++ b/docs/html/functions_l.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_l"></a>- l -</h3><ul>
+<li>l_Nodes
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a0b7939ba90a6db0ba2dda9731eefc38a">ENAS_DAG_Node</a>
+</li>
+<li>latest_generation_id
+: <a class="el" href="class_island.html#a24a6f4f8d54cb448ccd3be82385c2e02">Island</a>
+</li>
+<li>load_word_library()
+: <a class="el" href="class_corpus.html#aef1a06e5a764a0ffa2ecc8b4df042692">Corpus</a>
+</li>
+<li>log_ids
+: <a class="el" href="class_log.html#a814d0d060c29987d5d43d55b3d8d542c">Log</a>
+</li>
+<li>log_ids_mutex
+: <a class="el" href="class_log.html#aa8bf3e23cf88dc4e48aafd791fe93cd7">Log</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_m.html b/docs/html/functions_m.html
new file mode 100644
index 00000000..f4f6b471
--- /dev/null
+++ b/docs/html/functions_m.html
@@ -0,0 +1,104 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_m"></a>- m -</h3><ul>
+<li>max
+: <a class="el" href="class_word_series.html#ab61bb7ef53fe10c4ef2077ad70700c25">WordSeries</a>
+</li>
+<li>max_header_length
+: <a class="el" href="class_log.html#aec94f82d0ed91efcb398ce15f2f14a34">Log</a>
+</li>
+<li>max_island_size
+: <a class="el" href="class_island_speciation_strategy.html#ac78b4a8411e69dfea9b0a7b5aa3e3d99">IslandSpeciationStrategy</a>
+</li>
+<li>max_message_length
+: <a class="el" href="class_log.html#a5503fcf17f82f95b1090a797af98343c">Log</a>
+</li>
+<li>max_size
+: <a class="el" href="class_island.html#a5973473a3aad42bec285f02522cacce8">Island</a>
+</li>
+<li>min
+: <a class="el" href="class_word_series.html#a93302deb50a92c6aa6f7b2d8da29fee5">WordSeries</a>
+</li>
+<li>min_max_heap()
+: <a class="el" href="classmin__max__heap.html#a8150a4c81beed0795529f923cdc57751">min_max_heap&lt; T &gt;</a>
+</li>
+<li>minimal_genome
+: <a class="el" href="class_neat_speciation_strategy.html#ab991acafcd0032a3b7b54feae384414d">NeatSpeciationStrategy</a>
+</li>
+<li>mutation_rate
+: <a class="el" href="class_island_speciation_strategy.html#aa5969191a3d5f23deea86d85c88292f0">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aacd4a3966b8d8578b3cc1f67c03485b2">NeatSpeciationStrategy</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_n.html b/docs/html/functions_n.html
new file mode 100644
index 00000000..cf0c6e1c
--- /dev/null
+++ b/docs/html/functions_n.html
@@ -0,0 +1,91 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_n"></a>- n -</h3><ul>
+<li>name
+: <a class="el" href="class_word_series.html#ad40f74a195876908084a743b66c7b208">WordSeries</a>
+</li>
+<li>Nodes
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#ae96b8e1d3d379d097aff2d879ca25fdb">ENAS_DAG_Node</a>
+</li>
+<li>NONE
+: <a class="el" href="class_log.html#a44e61f1a4560b557bd8b3374cd87e0e3">Log</a>
+</li>
+<li>number_of_islands
+: <a class="el" href="class_island_speciation_strategy.html#adf6fad09de8e0b8ccc927580e4bd68f4">IslandSpeciationStrategy</a>
+</li>
+<li>number_rows
+: <a class="el" href="class_sentence_series.html#a8051bf7722f693797d589fbb6835afc2">SentenceSeries</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_o.html b/docs/html/functions_o.html
new file mode 100644
index 00000000..e9c06941
--- /dev/null
+++ b/docs/html/functions_o.html
@@ -0,0 +1,88 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_o"></a>- o -</h3><ul>
+<li>operator[]()
+: <a class="el" href="classmin__max__heap.html#a296ebbc3fe939b962f339d62aff83d15">min_max_heap&lt; T &gt;</a>
+</li>
+<li>output_directory
+: <a class="el" href="class_log.html#a18dc29ac4d511d8eab1bb9bc5771e7bf">Log</a>
+</li>
+<li>output_files
+: <a class="el" href="class_log.html#afe8e50d6e52f39d4ed931f13eb49af5f">Log</a>
+</li>
+<li>output_parameter_names
+: <a class="el" href="class_corpus.html#ac7b85b5b0a376016c63b58200aa03e19">Corpus</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_p.html b/docs/html/functions_p.html
new file mode 100644
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--- /dev/null
+++ b/docs/html/functions_p.html
@@ -0,0 +1,107 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_p"></a>- p -</h3><ul>
+<li>parents_repopulation()
+: <a class="el" href="class_island_speciation_strategy.html#aa26da7c800d7ab2b1299554a490deb4c">IslandSpeciationStrategy</a>
+</li>
+<li>parse_level_from_string()
+: <a class="el" href="class_log.html#a92a5eb55bc8e480aa984d6d592f07d69">Log</a>
+</li>
+<li>pop_max()
+: <a class="el" href="classmin__max__heap.html#a9184c94f7909bc98b6097cad8a49f4bc">min_max_heap&lt; T &gt;</a>
+</li>
+<li>pop_min()
+: <a class="el" href="classmin__max__heap.html#aa80b1443a03ec6c6f63382b8d93a4b11">min_max_heap&lt; T &gt;</a>
+</li>
+<li>population_not_improving_count
+: <a class="el" href="class_neat_speciation_strategy.html#aa9cf3794cccbfabb1d4e32897bf3a965">NeatSpeciationStrategy</a>
+</li>
+<li>prediction_softmax()
+: <a class="el" href="class_r_n_n.html#a7245cfe333987f29d59dd1c1442391ec">RNN</a>
+</li>
+<li>print()
+: <a class="el" href="class_island.html#a9d092c81f7d97c72972dfbdf6fb7cb14">Island</a>
+, <a class="el" href="class_island_speciation_strategy.html#a4ba6785df117932f3c465cbc31a5ca3f">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#abef17e0293c2e0a64b3b4b3b9b7775d2">NeatSpeciationStrategy</a>
+, <a class="el" href="class_speciation_strategy.html#a1d44f4c87ab00182e61f0fb364f274a9">SpeciationStrategy</a>
+, <a class="el" href="class_species.html#a2e9e0780d547c253c8532b5866b7bd4d">Species</a>
+</li>
+<li>print_gradient()
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a0676683aa9a220611f4e99a8a44e6e96">ENAS_DAG_Node</a>
+</li>
+<li>process_rank
+: <a class="el" href="class_log.html#ad6bd8ce041323bb69e69aeb9edbe12ee">Log</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_r.html b/docs/html/functions_r.html
new file mode 100644
index 00000000..7bfcda39
--- /dev/null
+++ b/docs/html/functions_r.html
@@ -0,0 +1,106 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_r"></a>- r -</h3><ul>
+<li>rank_islands()
+: <a class="el" href="class_island_speciation_strategy.html#a4dc7a8138b13b6ca22acbe9038e90ae4">IslandSpeciationStrategy</a>
+</li>
+<li>register_command_line_arguments()
+: <a class="el" href="class_log.html#a1e95d22090ba14b096609c67487f9761">Log</a>
+</li>
+<li>release_id()
+: <a class="el" href="class_log.html#aecae136e87aadf153c98f4f1f92ac44f">Log</a>
+</li>
+<li>REPOPULATING
+: <a class="el" href="class_island.html#a26a2558e99586f017335aa0ef4612758">Island</a>
+</li>
+<li>repopulation_method
+: <a class="el" href="class_island_speciation_strategy.html#adcdbda3a002564d49f286fb2699f37f5">IslandSpeciationStrategy</a>
+</li>
+<li>repopulation_mutations
+: <a class="el" href="class_island_speciation_strategy.html#af8729a80fa4e31059e5ae020476e5cd3">IslandSpeciationStrategy</a>
+</li>
+<li>reserve()
+: <a class="el" href="classmin__max__heap.html#a962166c243c1a1278b41b59d397a5189">min_max_heap&lt; T &gt;</a>
+</li>
+<li>restrict_to_rank()
+: <a class="el" href="class_log.html#a4718a27c58db20d66ac3c511931d475b">Log</a>
+</li>
+<li>restricted_rank
+: <a class="el" href="class_log.html#a47ec200a53bfc6b8b6a39bc91d5dbc86">Log</a>
+</li>
+<li>rw
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a96691f6c8700d1443045691b435db9b4">ENAS_DAG_Node</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_s.html b/docs/html/functions_s.html
new file mode 100644
index 00000000..f9e02ffb
--- /dev/null
+++ b/docs/html/functions_s.html
@@ -0,0 +1,110 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_s"></a>- s -</h3><ul>
+<li>seed_genome
+: <a class="el" href="class_island_speciation_strategy.html#a7b3dd21a20e4a14aa2a0657c73c3d608">IslandSpeciationStrategy</a>
+</li>
+<li>seed_genome_was_minimal
+: <a class="el" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">IslandSpeciationStrategy</a>
+</li>
+<li>sent_series
+: <a class="el" href="class_corpus.html#a96d8a8ed499eb739f08d8d7536008688">Corpus</a>
+</li>
+<li>series_length
+: <a class="el" href="class_r_n_n.html#ad70d91c21e6cd8890467d3f64eac0b9a">RNN</a>
+</li>
+<li>set_id()
+: <a class="el" href="class_log.html#ac02fea24138d69a35521d82ee64bb90d">Log</a>
+</li>
+<li>set_rank()
+: <a class="el" href="class_log.html#a6183417026fe34b0d1494f1504b52b8f">Log</a>
+</li>
+<li>set_status()
+: <a class="el" href="class_island.html#abee9ebff7f0da46fa3dde1718f675689">Island</a>
+</li>
+<li>size()
+: <a class="el" href="class_island.html#a41f743dc56fa3c26f1e709222416cadf">Island</a>
+, <a class="el" href="class_species.html#af9978e8876f3d43c5238225ad7b8de34">Species</a>
+</li>
+<li>Species()
+: <a class="el" href="class_species.html#a58b75aebb5ad400b89cb41e5d7700092">Species</a>
+</li>
+<li>std_dev
+: <a class="el" href="class_word_series.html#a6902b4c4b6bb2f865a59e4c5e27d7f18">WordSeries</a>
+</li>
+<li>std_message_level
+: <a class="el" href="class_log.html#a633c6eafa442ecfb3b3322f89496e52e">Log</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_t.html b/docs/html/functions_t.html
new file mode 100644
index 00000000..791f69a6
--- /dev/null
+++ b/docs/html/functions_t.html
@@ -0,0 +1,91 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_t"></a>- t -</h3><ul>
+<li>test_indexes
+: <a class="el" href="class_corpus.html#a5bfd2fe992d2f34b735b21196b9bd18b">Corpus</a>
+</li>
+<li>TRACE
+: <a class="el" href="class_log.html#a696a49a4d58146f0ee69be1562991e12">Log</a>
+</li>
+<li>trace()
+: <a class="el" href="class_log.html#ad0d504bc7f5957a814e9de5ea08f982a">Log</a>
+</li>
+<li>trace_no_header()
+: <a class="el" href="class_log.html#a5eca5217a6fc23a54cff35ff12ad04f6">Log</a>
+</li>
+<li>training_indexes
+: <a class="el" href="class_corpus.html#acc4af3ddc788396aede04a140e15f8b6">Corpus</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_u.html b/docs/html/functions_u.html
new file mode 100644
index 00000000..2afc5d69
--- /dev/null
+++ b/docs/html/functions_u.html
@@ -0,0 +1,80 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_u"></a>- u -</h3><ul>
+<li>use_regression
+: <a class="el" href="class_r_n_n.html#a17b9ce91b0ad9f0848f296021e5acd5f">RNN</a>
+, <a class="el" href="class_r_n_n___genome.html#a32113888aee78f2b95490a5289f47a44">RNN_Genome</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_v.html b/docs/html/functions_v.html
new file mode 100644
index 00000000..b5643a37
--- /dev/null
+++ b/docs/html/functions_v.html
@@ -0,0 +1,89 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_v"></a>- v -</h3><ul>
+<li>values
+: <a class="el" href="class_word_series.html#aed7840684ce132999a2d34a7e26dcd97">WordSeries</a>
+</li>
+<li>variance
+: <a class="el" href="class_word_series.html#ad1b8dc0e4f367bf0aa4a46ddb114f8c0">WordSeries</a>
+</li>
+<li>vocab
+: <a class="el" href="class_corpus.html#a7c44a0b8ab422b3fbe30e165e6f1bd34">Corpus</a>
+, <a class="el" href="class_sentence_series.html#a12648e58e8101346fb1d0b9008f89084">SentenceSeries</a>
+</li>
+<li>vocab_size
+: <a class="el" href="class_word_series.html#a0db2200d32c40a69f28f55457d05afac">WordSeries</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_vars.html b/docs/html/functions_vars.html
new file mode 100644
index 00000000..322abd4f
--- /dev/null
+++ b/docs/html/functions_vars.html
@@ -0,0 +1,401 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members - Variables</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+&#160;
+
+<h3><a id="index_a"></a>- a -</h3><ul>
+<li>ALL
+: <a class="el" href="class_log.html#a4249272125f8149b2d042101bcc6b49f">Log</a>
+</li>
+<li>all_parameter_names
+: <a class="el" href="class_corpus.html#a084591c7f27b8ad55bc68266fe461161">Corpus</a>
+</li>
+<li>average
+: <a class="el" href="class_word_series.html#a3422e982c01b71612924ac5f1f0d2181">WordSeries</a>
+</li>
+</ul>
+
+
+<h3><a id="index_b"></a>- b -</h3><ul>
+<li>batch_size
+: <a class="el" href="class_corpus.html#aaf5714da66d6475437fdae9fe262bb6a">Corpus</a>
+</li>
+<li>best_validation_mse
+: <a class="el" href="class_r_n_n___genome.html#a41ba624f5a9311ee8ef0803ae6063156">RNN_Genome</a>
+</li>
+</ul>
+
+
+<h3><a id="index_d"></a>- d -</h3><ul>
+<li>d_h_prev
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a366df37adbb4bc2824846ef60b6707e3">ENAS_DAG_Node</a>
+</li>
+<li>d_rw
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a4c2c49ca7aed21901ad5d79d3f921459">ENAS_DAG_Node</a>
+</li>
+<li>d_weights
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a127cf43bd1e8014d9fb951cf26c9b737">ENAS_DAG_Node</a>
+</li>
+<li>d_zw
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a6df39cdee9de29977d989383c312afeb">ENAS_DAG_Node</a>
+</li>
+<li>DEBUG
+: <a class="el" href="class_log.html#addf4eb67a84c9ee39ed3028005f25e40">Log</a>
+</li>
+</ul>
+
+
+<h3><a id="index_e"></a>- e -</h3><ul>
+<li>erase_again
+: <a class="el" href="class_island.html#ae46bdcec5ad489d18a4bbd9f22d9cabc">Island</a>
+</li>
+<li>erased
+: <a class="el" href="class_island.html#aa676d36c51b69868c42d08fbcf6733c8">Island</a>
+</li>
+<li>erased_generation_id
+: <a class="el" href="class_island.html#a054b583b4364d07d8c7819daf9bcdb47">Island</a>
+</li>
+<li>ERROR
+: <a class="el" href="class_log.html#af3c3afdba50a451fd24b6014a9f6e427">Log</a>
+</li>
+<li>extinction_event_generation_number
+: <a class="el" href="class_island_speciation_strategy.html#acf9f4b165c831eada8b46224eab05443">IslandSpeciationStrategy</a>
+</li>
+</ul>
+
+
+<h3><a id="index_f"></a>- f -</h3><ul>
+<li>FATAL
+: <a class="el" href="class_log.html#a829c89b207740611e743a6e2f07e477f">Log</a>
+</li>
+<li>file_message_level
+: <a class="el" href="class_log.html#a08b261dd43ff89110e602a3a61f6ec61">Log</a>
+</li>
+<li>filename
+: <a class="el" href="class_sentence_series.html#a71ecf2220dbde9a683361a418fd79caa">SentenceSeries</a>
+</li>
+<li>filenames
+: <a class="el" href="class_corpus.html#acdc26dc71f4664b914bc6f4ddd08f5c7">Corpus</a>
+</li>
+<li>FILLED
+: <a class="el" href="class_island.html#a857212729b8405e77721f499d0b85513">Island</a>
+</li>
+</ul>
+
+
+<h3><a id="index_g"></a>- g -</h3><ul>
+<li>generated_genomes
+: <a class="el" href="class_island_speciation_strategy.html#a0878978f59055a4a5a7aa54dc4b905a3">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aa2ecd78ba30f3cc72d2bf1367d5899bc">NeatSpeciationStrategy</a>
+</li>
+<li>generation_island
+: <a class="el" href="class_island_speciation_strategy.html#aab18708f4ad07f725782234e31ee011f">IslandSpeciationStrategy</a>
+</li>
+<li>generation_species
+: <a class="el" href="class_neat_speciation_strategy.html#a8c33c9c76990e80839167c2791773bfd">NeatSpeciationStrategy</a>
+</li>
+<li>genomes
+: <a class="el" href="class_island.html#a41c1201d69104c49438c97dbc8c93db2">Island</a>
+, <a class="el" href="class_species.html#a6b156c1f48620bc39bc9efe6c9324e81">Species</a>
+</li>
+</ul>
+
+
+<h3><a id="index_i"></a>- i -</h3><ul>
+<li>id
+: <a class="el" href="class_island.html#a859a134cc183618af109dd69b85f2955">Island</a>
+, <a class="el" href="class_species.html#a2e22624d59864dbecd5ee16103b458bd">Species</a>
+</li>
+<li>INFO
+: <a class="el" href="class_log.html#a70efafdaaf797f644bb24a8e1c7f5643">Log</a>
+</li>
+<li>INITIALIZING
+: <a class="el" href="class_island.html#acb98955eb9f69a25c7e3af81f4d5cc5c">Island</a>
+</li>
+<li>input_parameter_names
+: <a class="el" href="class_corpus.html#a21a1934fd5493a82fc572226639525c6">Corpus</a>
+</li>
+<li>inserted_genomes
+: <a class="el" href="class_island_speciation_strategy.html#af5d118e77d6c24c328f8d477f776f15e">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#a863ed8485d76c0a036f7a533148888e8">NeatSpeciationStrategy</a>
+</li>
+<li>inter_island_crossover_rate
+: <a class="el" href="class_island_speciation_strategy.html#af4c685f5be866da1bb4395506aec112e">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#ae407ee52a926c60746041987e60f1ecd">NeatSpeciationStrategy</a>
+</li>
+<li>intra_island_crossover_rate
+: <a class="el" href="class_island_speciation_strategy.html#a60bc752d6262d42b1dd294d8c4da563d">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#ae212edf21f96938c934ad7f824f5d4d7">NeatSpeciationStrategy</a>
+</li>
+<li>island_ranking_method
+: <a class="el" href="class_island_speciation_strategy.html#a2e62f197c3bcc0d40369ac7a7ea9ed31">IslandSpeciationStrategy</a>
+</li>
+<li>islands
+: <a class="el" href="class_island_speciation_strategy.html#a51947f81a70302a029b332b6d097beda">IslandSpeciationStrategy</a>
+</li>
+<li>islands_to_exterminate
+: <a class="el" href="class_island_speciation_strategy.html#a51a285855bc78f42965b8d68a6e36257">IslandSpeciationStrategy</a>
+</li>
+</ul>
+
+
+<h3><a id="index_l"></a>- l -</h3><ul>
+<li>l_Nodes
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a0b7939ba90a6db0ba2dda9731eefc38a">ENAS_DAG_Node</a>
+</li>
+<li>latest_generation_id
+: <a class="el" href="class_island.html#a24a6f4f8d54cb448ccd3be82385c2e02">Island</a>
+</li>
+<li>log_ids
+: <a class="el" href="class_log.html#a814d0d060c29987d5d43d55b3d8d542c">Log</a>
+</li>
+<li>log_ids_mutex
+: <a class="el" href="class_log.html#aa8bf3e23cf88dc4e48aafd791fe93cd7">Log</a>
+</li>
+</ul>
+
+
+<h3><a id="index_m"></a>- m -</h3><ul>
+<li>max
+: <a class="el" href="class_word_series.html#ab61bb7ef53fe10c4ef2077ad70700c25">WordSeries</a>
+</li>
+<li>max_header_length
+: <a class="el" href="class_log.html#aec94f82d0ed91efcb398ce15f2f14a34">Log</a>
+</li>
+<li>max_island_size
+: <a class="el" href="class_island_speciation_strategy.html#ac78b4a8411e69dfea9b0a7b5aa3e3d99">IslandSpeciationStrategy</a>
+</li>
+<li>max_message_length
+: <a class="el" href="class_log.html#a5503fcf17f82f95b1090a797af98343c">Log</a>
+</li>
+<li>max_size
+: <a class="el" href="class_island.html#a5973473a3aad42bec285f02522cacce8">Island</a>
+</li>
+<li>min
+: <a class="el" href="class_word_series.html#a93302deb50a92c6aa6f7b2d8da29fee5">WordSeries</a>
+</li>
+<li>minimal_genome
+: <a class="el" href="class_neat_speciation_strategy.html#ab991acafcd0032a3b7b54feae384414d">NeatSpeciationStrategy</a>
+</li>
+<li>mutation_rate
+: <a class="el" href="class_island_speciation_strategy.html#aa5969191a3d5f23deea86d85c88292f0">IslandSpeciationStrategy</a>
+, <a class="el" href="class_neat_speciation_strategy.html#aacd4a3966b8d8578b3cc1f67c03485b2">NeatSpeciationStrategy</a>
+</li>
+</ul>
+
+
+<h3><a id="index_n"></a>- n -</h3><ul>
+<li>name
+: <a class="el" href="class_word_series.html#ad40f74a195876908084a743b66c7b208">WordSeries</a>
+</li>
+<li>Nodes
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#ae96b8e1d3d379d097aff2d879ca25fdb">ENAS_DAG_Node</a>
+</li>
+<li>NONE
+: <a class="el" href="class_log.html#a44e61f1a4560b557bd8b3374cd87e0e3">Log</a>
+</li>
+<li>number_of_islands
+: <a class="el" href="class_island_speciation_strategy.html#adf6fad09de8e0b8ccc927580e4bd68f4">IslandSpeciationStrategy</a>
+</li>
+<li>number_rows
+: <a class="el" href="class_sentence_series.html#a8051bf7722f693797d589fbb6835afc2">SentenceSeries</a>
+</li>
+</ul>
+
+
+<h3><a id="index_o"></a>- o -</h3><ul>
+<li>output_directory
+: <a class="el" href="class_log.html#a18dc29ac4d511d8eab1bb9bc5771e7bf">Log</a>
+</li>
+<li>output_files
+: <a class="el" href="class_log.html#afe8e50d6e52f39d4ed931f13eb49af5f">Log</a>
+</li>
+<li>output_parameter_names
+: <a class="el" href="class_corpus.html#ac7b85b5b0a376016c63b58200aa03e19">Corpus</a>
+</li>
+</ul>
+
+
+<h3><a id="index_p"></a>- p -</h3><ul>
+<li>population_not_improving_count
+: <a class="el" href="class_neat_speciation_strategy.html#aa9cf3794cccbfabb1d4e32897bf3a965">NeatSpeciationStrategy</a>
+</li>
+<li>process_rank
+: <a class="el" href="class_log.html#ad6bd8ce041323bb69e69aeb9edbe12ee">Log</a>
+</li>
+</ul>
+
+
+<h3><a id="index_r"></a>- r -</h3><ul>
+<li>REPOPULATING
+: <a class="el" href="class_island.html#a26a2558e99586f017335aa0ef4612758">Island</a>
+</li>
+<li>repopulation_method
+: <a class="el" href="class_island_speciation_strategy.html#adcdbda3a002564d49f286fb2699f37f5">IslandSpeciationStrategy</a>
+</li>
+<li>repopulation_mutations
+: <a class="el" href="class_island_speciation_strategy.html#af8729a80fa4e31059e5ae020476e5cd3">IslandSpeciationStrategy</a>
+</li>
+<li>restricted_rank
+: <a class="el" href="class_log.html#a47ec200a53bfc6b8b6a39bc91d5dbc86">Log</a>
+</li>
+<li>rw
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a96691f6c8700d1443045691b435db9b4">ENAS_DAG_Node</a>
+</li>
+</ul>
+
+
+<h3><a id="index_s"></a>- s -</h3><ul>
+<li>seed_genome
+: <a class="el" href="class_island_speciation_strategy.html#a7b3dd21a20e4a14aa2a0657c73c3d608">IslandSpeciationStrategy</a>
+</li>
+<li>seed_genome_was_minimal
+: <a class="el" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">IslandSpeciationStrategy</a>
+</li>
+<li>sent_series
+: <a class="el" href="class_corpus.html#a96d8a8ed499eb739f08d8d7536008688">Corpus</a>
+</li>
+<li>series_length
+: <a class="el" href="class_r_n_n.html#ad70d91c21e6cd8890467d3f64eac0b9a">RNN</a>
+</li>
+<li>std_dev
+: <a class="el" href="class_word_series.html#a6902b4c4b6bb2f865a59e4c5e27d7f18">WordSeries</a>
+</li>
+<li>std_message_level
+: <a class="el" href="class_log.html#a633c6eafa442ecfb3b3322f89496e52e">Log</a>
+</li>
+</ul>
+
+
+<h3><a id="index_t"></a>- t -</h3><ul>
+<li>test_indexes
+: <a class="el" href="class_corpus.html#a5bfd2fe992d2f34b735b21196b9bd18b">Corpus</a>
+</li>
+<li>TRACE
+: <a class="el" href="class_log.html#a696a49a4d58146f0ee69be1562991e12">Log</a>
+</li>
+<li>training_indexes
+: <a class="el" href="class_corpus.html#acc4af3ddc788396aede04a140e15f8b6">Corpus</a>
+</li>
+</ul>
+
+
+<h3><a id="index_u"></a>- u -</h3><ul>
+<li>use_regression
+: <a class="el" href="class_r_n_n.html#a17b9ce91b0ad9f0848f296021e5acd5f">RNN</a>
+, <a class="el" href="class_r_n_n___genome.html#a32113888aee78f2b95490a5289f47a44">RNN_Genome</a>
+</li>
+</ul>
+
+
+<h3><a id="index_v"></a>- v -</h3><ul>
+<li>values
+: <a class="el" href="class_word_series.html#aed7840684ce132999a2d34a7e26dcd97">WordSeries</a>
+</li>
+<li>variance
+: <a class="el" href="class_word_series.html#ad1b8dc0e4f367bf0aa4a46ddb114f8c0">WordSeries</a>
+</li>
+<li>vocab
+: <a class="el" href="class_corpus.html#a7c44a0b8ab422b3fbe30e165e6f1bd34">Corpus</a>
+, <a class="el" href="class_sentence_series.html#a12648e58e8101346fb1d0b9008f89084">SentenceSeries</a>
+</li>
+<li>vocab_size
+: <a class="el" href="class_word_series.html#a0db2200d32c40a69f28f55457d05afac">WordSeries</a>
+</li>
+</ul>
+
+
+<h3><a id="index_w"></a>- w -</h3><ul>
+<li>WARNING
+: <a class="el" href="class_log.html#a02c6c399678d6687f38c6600751aa2e7">Log</a>
+</li>
+<li>weights
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a169c584563029fdec7d51390c6bef838">ENAS_DAG_Node</a>
+</li>
+<li>word_index
+: <a class="el" href="class_corpus.html#ad420d9f3cecbc7ea4af0ff68a37e386d">Corpus</a>
+, <a class="el" href="class_sentence_series.html#ad0c1da927f87e6778900f1e93faf8a8e">SentenceSeries</a>
+</li>
+<li>word_series
+: <a class="el" href="class_sentence_series.html#a78609974545b5e015f3a5f477d876c4b">SentenceSeries</a>
+</li>
+<li>write_to_file
+: <a class="el" href="class_log.html#a20bd437aa24965f6e9650fd5e2d48923">Log</a>
+</li>
+</ul>
+
+
+<h3><a id="index_z"></a>- z -</h3><ul>
+<li>zw
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a543c626068b87030fb140a4ebeb38f30">ENAS_DAG_Node</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_w.html b/docs/html/functions_w.html
new file mode 100644
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--- /dev/null
+++ b/docs/html/functions_w.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_w"></a>- w -</h3><ul>
+<li>WARNING
+: <a class="el" href="class_log.html#a02c6c399678d6687f38c6600751aa2e7">Log</a>
+</li>
+<li>warning()
+: <a class="el" href="class_log.html#a477d1ab8cce3a2ef12cb8006fa3c6bf5">Log</a>
+</li>
+<li>warning_no_header()
+: <a class="el" href="class_log.html#a9bbfa4b8f4fb2262d914f00ba04dd6c6">Log</a>
+</li>
+<li>weights
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a169c584563029fdec7d51390c6bef838">ENAS_DAG_Node</a>
+</li>
+<li>word_index
+: <a class="el" href="class_corpus.html#ad420d9f3cecbc7ea4af0ff68a37e386d">Corpus</a>
+, <a class="el" href="class_sentence_series.html#ad0c1da927f87e6778900f1e93faf8a8e">SentenceSeries</a>
+</li>
+<li>word_series
+: <a class="el" href="class_sentence_series.html#a78609974545b5e015f3a5f477d876c4b">SentenceSeries</a>
+</li>
+<li>write_message()
+: <a class="el" href="class_log.html#aff6a4531e693fd53ad051c7fef28c6aa">Log</a>
+</li>
+<li>write_predictions()
+: <a class="el" href="class_r_n_n___genome.html#a99769540d03c292a1e63bd753ae58ceb">RNN_Genome</a>
+</li>
+<li>write_sentence_series_sets()
+: <a class="el" href="class_corpus.html#a45ee2e625bab4930a20b8448d0e168b0">Corpus</a>
+</li>
+<li>write_to_file
+: <a class="el" href="class_log.html#a20bd437aa24965f6e9650fd5e2d48923">Log</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/functions_z.html b/docs/html/functions_z.html
new file mode 100644
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--- /dev/null
+++ b/docs/html/functions_z.html
@@ -0,0 +1,79 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Class Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
+
+<h3><a id="index_z"></a>- z -</h3><ul>
+<li>zw
+: <a class="el" href="class_e_n_a_s___d_a_g___node.html#a543c626068b87030fb140a4ebeb38f30">ENAS_DAG_Node</a>
+</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/html/generate__nn_8hxx_source.html b/docs/html/generate__nn_8hxx_source.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: rnn/generate_nn.hxx Source File</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+<div id="nav-path" class="navpath">
+  <ul>
+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">generate_nn.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef RNN_GENERATE_NN_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define RNN_GENERATE_NN_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
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+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
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+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &quot;rnn/rnn_genome.hxx&quot;</span></div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &quot;common/weight_initialize.hxx&quot;</span></div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* create_ff(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keywordtype">int</span> number_hidden_layers, <span class="keywordtype">int</span> number_hidden_nodes, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names, <span class="keywordtype">int</span> max_recurrent_depth, WeightType weight_initialize, WeightType weight_inheritance, WeightType mutated_component_weight);</div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160; </div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* create_jordan(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keywordtype">int</span> number_hidden_layers, <span class="keywordtype">int</span> number_hidden_nodes, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names, <span class="keywordtype">int</span> max_recurrent_depth, WeightType weight_initialize);</div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160; </div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* create_elman(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keywordtype">int</span> number_hidden_layers, <span class="keywordtype">int</span> number_hidden_nodes, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names, <span class="keywordtype">int</span> max_recurrent_depth, WeightType weight_initialize);</div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160; </div>
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+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* create_ugrnn(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keywordtype">int</span> number_hidden_layers, <span class="keywordtype">int</span> number_hidden_nodes, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names, <span class="keywordtype">int</span> max_recurrent_depth, WeightType weight_initialize);</div>
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+<div class="ttc" id="aclass_r_n_n___genome_html"><div class="ttname"><a href="class_r_n_n___genome.html">RNN_Genome</a></div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:37</div></div>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: rnn_tests/gradient_test.hxx Source File</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+  <ul>
+<li class="navelem"><a class="el" href="dir_fc98784f4acdf084308cfd3aca5f5f4b.html">rnn_tests</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">gradient_test.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_GRADIENT_TEST</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_GRADIENT_TEST</span></div>
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+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;chrono&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string/getline.html">std::getline</a>;</div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">std::ifstream</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160; </div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160; </div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
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+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
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+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="preprocessor">#include &quot;common/arguments.hxx&quot;</span></div>
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+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="preprocessor">#include &quot;rnn/lstm_node.hxx&quot;</span></div>
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+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="preprocessor">#include &quot;rnn/rnn_genome.hxx&quot;</span></div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="preprocessor">#include &quot;rnn/rnn_node.hxx&quot;</span></div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="preprocessor">#include &quot;rnn/rnn_node_interface.hxx&quot;</span></div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160; </div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="preprocessor">#include &quot;rnn/generate_nn.hxx&quot;</span></div>
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+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="preprocessor">#include &quot;time_series/time_series.hxx&quot;</span></div>
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+<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="keywordtype">void</span> initialize_generator();</div>
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+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="keywordtype">void</span> gradient_test(<span class="keywordtype">string</span> name, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *genome, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;inputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;outputs);</div>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">gru_node.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_GRU_NODE_HXX</span></div>
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+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
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+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
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+<li class="navelem"><a class="el" href="dir_5886800866fd6099dc756e063000bcd7.html">image_tools</a></li>  </ul>
+</div>
+</div><!-- top -->
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+  <div class="headertitle">
+<div class="title">image_set.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef IMAGE_SET_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define IMAGE_SET_HXX</span></div>
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+  <ul>
+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">island.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_ISLAND_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_ISLAND_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;algorithm&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/algorithm/sort.html">std::sort</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/algorithm/upper_bound.html">std::upper_bound</a>;</div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160; </div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160; </div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160; </div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &lt;unordered_map&gt;</span></div>
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+<div class="line"><a name="l00026"></a><span class="lineno"><a class="line" href="class_island.html#a054b583b4364d07d8c7819daf9bcdb47">   26</a></span>&#160;        int32_t <a class="code" href="class_island.html#a054b583b4364d07d8c7819daf9bcdb47">erased_generation_id</a> = -1; </div>
+<div class="line"><a name="l00028"></a><span class="lineno"><a class="line" href="class_island.html#a24a6f4f8d54cb448ccd3be82385c2e02">   28</a></span>&#160;        int32_t <a class="code" href="class_island.html#a24a6f4f8d54cb448ccd3be82385c2e02">latest_generation_id</a>; </div>
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+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160; </div>
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+<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;        <span class="keywordtype">void</span> set_erase_again_num();</div>
+<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;};</div>
+<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160; </div>
+<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_island_html_ac135f9b252512f04afcd7f8c2f3f621f"><div class="ttname"><a href="class_island.html#ac135f9b252512f04afcd7f8c2f3f621f">Island::get_worst_fitness</a></div><div class="ttdeci">double get_worst_fitness()</div><div class="ttdoc">Returns the fitness of the worst genome in the island.</div><div class="ttdef"><b>Definition:</b> island.cxx:47</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_island_html_aea94baab5d4faa09454131236baf187c"><div class="ttname"><a href="class_island.html#aea94baab5d4faa09454131236baf187c">Island::get_best_fitness</a></div><div class="ttdeci">double get_best_fitness()</div><div class="ttdoc">Returns the fitness of the best genome in the island.</div><div class="ttdef"><b>Definition:</b> island.cxx:41</div></div>
+<div class="ttc" id="aclass_island_html_abb653cd2fc60819a0ab2c204930a7e8a"><div class="ttname"><a href="class_island.html#abb653cd2fc60819a0ab2c204930a7e8a">Island::been_erased</a></div><div class="ttdeci">bool been_erased()</div><div class="ttdoc">return if this island has been erased before.</div><div class="ttdef"><b>Definition:</b> island.cxx:361</div></div>
+<div class="ttc" id="aclass_island_html"><div class="ttname"><a href="class_island.html">Island</a></div><div class="ttdef"><b>Definition:</b> island.hxx:22</div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_island_html_a105174354a7313b3c6520892a3de653e"><div class="ttname"><a href="class_island.html#a105174354a7313b3c6520892a3de653e">Island::insert_genome</a></div><div class="ttdeci">int32_t insert_genome(RNN_Genome *genome)</div><div class="ttdoc">Inserts a genome into the island.</div><div class="ttdef"><b>Definition:</b> island.cxx:107</div></div>
+<div class="ttc" id="aclass_island_html_a8c941beca36c75f2c4fc2fd0d2dfc2c5"><div class="ttname"><a href="class_island.html#a8c941beca36c75f2c4fc2fd0d2dfc2c5">Island::get_status</a></div><div class="ttdeci">int32_t get_status()</div><div class="ttdef"><b>Definition:</b> island.cxx:346</div></div>
+<div class="ttc" id="aclass_island_html_a7c3b5331a7ee1dff6206a855e6b5c8b8"><div class="ttname"><a href="class_island.html#a7c3b5331a7ee1dff6206a855e6b5c8b8">Island::copy_random_genome</a></div><div class="ttdeci">void copy_random_genome(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, RNN_Genome **genome)</div><div class="ttdoc">Selects a genome from the island at random and returns a copy of it.</div><div class="ttdef"><b>Definition:</b> island.cxx:75</div></div>
+<div class="ttc" id="aclass_island_html_a26a2558e99586f017335aa0ef4612758"><div class="ttname"><a href="class_island.html#a26a2558e99586f017335aa0ef4612758">Island::REPOPULATING</a></div><div class="ttdeci">const static int32_t REPOPULATING</div><div class="ttdoc">status flag for if the island is repopulating.</div><div class="ttdef"><b>Definition:</b> island.hxx:44</div></div>
+<div class="ttc" id="aclass_island_html_a32f068675c8a7f999cb18464d00e8119"><div class="ttname"><a href="class_island.html#a32f068675c8a7f999cb18464d00e8119">Island::Island</a></div><div class="ttdeci">Island(int32_t id, int32_t max_size)</div><div class="ttdoc">Initializes an island with a given max size.</div><div class="ttdef"><b>Definition:</b> island.cxx:25</div></div>
+<div class="ttc" id="aclass_island_html_abee9ebff7f0da46fa3dde1718f675689"><div class="ttname"><a href="class_island.html#abee9ebff7f0da46fa3dde1718f675689">Island::set_status</a></div><div class="ttdeci">void set_status(int32_t status_to_set)</div><div class="ttdoc">after erasing the island, sets the island status to repopulating.</div><div class="ttdef"><b>Definition:</b> island.cxx:350</div></div>
+<div class="ttc" id="aclass_island_html_a41c1201d69104c49438c97dbc8c93db2"><div class="ttname"><a href="class_island.html#a41c1201d69104c49438c97dbc8c93db2">Island::genomes</a></div><div class="ttdeci">vector&lt; RNN_Genome * &gt; genomes</div><div class="ttdoc">The genomes on this island, stored in sorted order best (front) to worst (back).</div><div class="ttdef"><b>Definition:</b> island.hxx:33</div></div>
+<div class="ttc" id="aclass_island_html_ae46bdcec5ad489d18a4bbd9f22d9cabc"><div class="ttname"><a href="class_island.html#ae46bdcec5ad489d18a4bbd9f22d9cabc">Island::erase_again</a></div><div class="ttdeci">int32_t erase_again</div><div class="ttdoc">The status of this island (either Island:INITIALIZING, Island::FILLED or Island::REPOPULATING</div><div class="ttdef"><b>Definition:</b> island.hxx:38</div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
+<div class="ttc" id="aclass_island_html_aa676d36c51b69868c42d08fbcf6733c8"><div class="ttname"><a href="class_island.html#aa676d36c51b69868c42d08fbcf6733c8">Island::erased</a></div><div class="ttdeci">bool erased</div><div class="ttdoc">a flag to track if this islands has been erased</div><div class="ttdef"><b>Definition:</b> island.hxx:39</div></div>
+<div class="ttc" id="asort_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/algorithm/sort.html">std::sort</a></div><div class="ttdeci">T sort(T... args)</div></div>
+<div class="ttc" id="aclass_island_html_a054b583b4364d07d8c7819daf9bcdb47"><div class="ttname"><a href="class_island.html#a054b583b4364d07d8c7819daf9bcdb47">Island::erased_generation_id</a></div><div class="ttdeci">int32_t erased_generation_id</div><div class="ttdoc">The latest generation id of an erased island, erased_generation_id = largest_generation_id when this ...</div><div class="ttdef"><b>Definition:</b> island.hxx:26</div></div>
+<div class="ttc" id="aclass_island_html_a859a134cc183618af109dd69b85f2955"><div class="ttname"><a href="class_island.html#a859a134cc183618af109dd69b85f2955">Island::id</a></div><div class="ttdeci">int32_t id</div><div class="ttdoc">An integer ID for this island.</div><div class="ttdef"><b>Definition:</b> island.hxx:24</div></div>
+<div class="ttc" id="auniform_real_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a></div></div>
+<div class="ttc" id="aclass_island_html_a79525b52b34ef3674b837072b5d34d19"><div class="ttname"><a href="class_island.html#a79525b52b34ef3674b837072b5d34d19">Island::is_repopulating</a></div><div class="ttdeci">bool is_repopulating()</div><div class="ttdoc">Returns true if the island is repopulating, i.e., it's size is &lt;= max_size and it has been full befor...</div><div class="ttdef"><b>Definition:</b> island.cxx:69</div></div>
+<div class="ttc" id="aclass_island_html_a857212729b8405e77721f499d0b85513"><div class="ttname"><a href="class_island.html#a857212729b8405e77721f499d0b85513">Island::FILLED</a></div><div class="ttdeci">const static int32_t FILLED</div><div class="ttdoc">status flag for if the island is filled.</div><div class="ttdef"><b>Definition:</b> island.hxx:43</div></div>
+<div class="ttc" id="aclass_island_html_a9d092c81f7d97c72972dfbdf6fb7cb14"><div class="ttname"><a href="class_island.html#a9d092c81f7d97c72972dfbdf6fb7cb14">Island::print</a></div><div class="ttdeci">void print(string indent=&quot;&quot;)</div><div class="ttdoc">Prints out the state of this island.</div><div class="ttdef"><b>Definition:</b> island.cxx:314</div></div>
+<div class="ttc" id="aclass_island_html_a5973473a3aad42bec285f02522cacce8"><div class="ttname"><a href="class_island.html#a5973473a3aad42bec285f02522cacce8">Island::max_size</a></div><div class="ttdeci">int32_t max_size</div><div class="ttdoc">The maximum number of genomes in the island.</div><div class="ttdef"><b>Definition:</b> island.hxx:25</div></div>
+<div class="ttc" id="aclass_island_html_a24a6f4f8d54cb448ccd3be82385c2e02"><div class="ttname"><a href="class_island.html#a24a6f4f8d54cb448ccd3be82385c2e02">Island::latest_generation_id</a></div><div class="ttdeci">int32_t latest_generation_id</div><div class="ttdoc">The latest generation id of genome being generated, including the ones doing backprop by workers.</div><div class="ttdef"><b>Definition:</b> island.hxx:28</div></div>
+<div class="ttc" id="aclass_island_html_a42a519a1626c5db6004173529a5e2627"><div class="ttname"><a href="class_island.html#a42a519a1626c5db6004173529a5e2627">Island::is_full</a></div><div class="ttdeci">bool is_full()</div><div class="ttdoc">Returns true if the island has Island::max_size genomes.</div><div class="ttdef"><b>Definition:</b> island.cxx:61</div></div>
+<div class="ttc" id="aclass_island_html_a2f5d1d504a6bc11d0d63cf9d4bea5a63"><div class="ttname"><a href="class_island.html#a2f5d1d504a6bc11d0d63cf9d4bea5a63">Island::get_worst_genome</a></div><div class="ttdeci">RNN_Genome * get_worst_genome()</div><div class="ttdoc">Returns the worst genomme in the island.</div><div class="ttdef"><b>Definition:</b> island.cxx:36</div></div>
+<div class="ttc" id="aclass_island_html_acb98955eb9f69a25c7e3af81f4d5cc5c"><div class="ttname"><a href="class_island.html#acb98955eb9f69a25c7e3af81f4d5cc5c">Island::INITIALIZING</a></div><div class="ttdeci">const static int32_t INITIALIZING</div><div class="ttdoc">status flag for if the island is initializing.</div><div class="ttdef"><b>Definition:</b> island.hxx:42</div></div>
+<div class="ttc" id="aclass_island_html_acb96603328b5dff91b41470424e7494e"><div class="ttname"><a href="class_island.html#acb96603328b5dff91b41470424e7494e">Island::get_erased_generation_id</a></div><div class="ttdeci">int32_t get_erased_generation_id()</div><div class="ttdoc">returns the get_erased_generation_id.</div><div class="ttdef"><b>Definition:</b> island.cxx:342</div></div>
+<div class="ttc" id="aupper_bound_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/algorithm/upper_bound.html">std::upper_bound</a></div><div class="ttdeci">T upper_bound(T... args)</div></div>
+<div class="ttc" id="aclass_island_html_a733a2accb72bce21194747fd3c1ee819"><div class="ttname"><a href="class_island.html#a733a2accb72bce21194747fd3c1ee819">Island::erase_island</a></div><div class="ttdeci">void erase_island()</div><div class="ttdoc">erases the entire island and set the erased_generation_id.</div><div class="ttdef"><b>Definition:</b> island.cxx:325</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html"><div class="ttname"><a href="class_r_n_n___genome.html">RNN_Genome</a></div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:37</div></div>
+<div class="ttc" id="aclass_island_html_a4d7e730b2c3e9cc53ae3205b1fbe2930"><div class="ttname"><a href="class_island.html#a4d7e730b2c3e9cc53ae3205b1fbe2930">Island::is_initializing</a></div><div class="ttdeci">bool is_initializing()</div><div class="ttdoc">Returns true if the island is initializing, i.e., it's size is &lt;= max_size and it hasn't been cleared...</div><div class="ttdef"><b>Definition:</b> island.cxx:65</div></div>
+<div class="ttc" id="aclass_island_html_ac49713b90f9110f52c5083540448df8d"><div class="ttname"><a href="class_island.html#ac49713b90f9110f52c5083540448df8d">Island::copy_two_random_genomes</a></div><div class="ttdeci">void copy_two_random_genomes(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, RNN_Genome **genome1, RNN_Genome **genome2)</div><div class="ttdoc">Selects two different genomes from the island at random and returns copies of them.</div><div class="ttdef"><b>Definition:</b> island.cxx:80</div></div>
+<div class="ttc" id="aclass_island_html_a41f743dc56fa3c26f1e709222416cadf"><div class="ttname"><a href="class_island.html#a41f743dc56fa3c26f1e709222416cadf">Island::size</a></div><div class="ttdeci">int32_t size()</div><div class="ttdoc">Returns the size of the island.</div><div class="ttdef"><b>Definition:</b> island.cxx:57</div></div>
+<div class="ttc" id="aclass_island_html_ac5cae801aac1403f3523a7949e415417"><div class="ttname"><a href="class_island.html#ac5cae801aac1403f3523a7949e415417">Island::get_max_size</a></div><div class="ttdeci">int32_t get_max_size()</div><div class="ttdoc">Returns the maximum number of genomes the island can hold.</div><div class="ttdef"><b>Definition:</b> island.cxx:53</div></div>
+<div class="ttc" id="aclass_island_html_abf327f29018863338f4eb351c1f4a2c8"><div class="ttname"><a href="class_island.html#abf327f29018863338f4eb351c1f4a2c8">Island::get_best_genome</a></div><div class="ttdeci">RNN_Genome * get_best_genome()</div><div class="ttdoc">Returns the best genomme in the island.</div><div class="ttdef"><b>Definition:</b> island.cxx:31</div></div>
+<div class="ttc" id="aunordered_map_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/unordered_map.html">std::unordered_map</a></div></div>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">island_speciation_strategy.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_ISLAND_SPECIATION_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_ISLAND_SPECIATION_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;functional&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">std::function</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160; </div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160; </div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160; </div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &quot;island.hxx&quot;</span></div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &quot;rnn_genome.hxx&quot;</span></div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="preprocessor">#include &quot;speciation_strategy.hxx&quot;</span></div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160; </div>
+<div class="line"><a name="l00019"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html">   19</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a> : <span class="keyword">public</span> <a class="code" href="class_speciation_strategy.html">SpeciationStrategy</a> {</div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00021"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#aab18708f4ad07f725782234e31ee011f">   21</a></span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#aab18708f4ad07f725782234e31ee011f">generation_island</a>; </div>
+<div class="line"><a name="l00023"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#adf6fad09de8e0b8ccc927580e4bd68f4">   23</a></span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#adf6fad09de8e0b8ccc927580e4bd68f4">number_of_islands</a>; </div>
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+<div class="line"><a name="l00028"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#a60bc752d6262d42b1dd294d8c4da563d">   28</a></span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_island_speciation_strategy.html#a60bc752d6262d42b1dd294d8c4da563d">intra_island_crossover_rate</a>; </div>
+<div class="line"><a name="l00029"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#af4c685f5be866da1bb4395506aec112e">   29</a></span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_island_speciation_strategy.html#af4c685f5be866da1bb4395506aec112e">inter_island_crossover_rate</a>; </div>
+<div class="line"><a name="l00031"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#a0878978f59055a4a5a7aa54dc4b905a3">   31</a></span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#a0878978f59055a4a5a7aa54dc4b905a3">generated_genomes</a>; </div>
+<div class="line"><a name="l00032"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#af5d118e77d6c24c328f8d477f776f15e">   32</a></span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#af5d118e77d6c24c328f8d477f776f15e">inserted_genomes</a>; </div>
+<div class="line"><a name="l00034"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#a7b3dd21a20e4a14aa2a0657c73c3d608">   34</a></span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *<a class="code" href="class_island_speciation_strategy.html#a7b3dd21a20e4a14aa2a0657c73c3d608">seed_genome</a>; </div>
+<div class="line"><a name="l00036"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#a2e62f197c3bcc0d40369ac7a7ea9ed31">   36</a></span>&#160;        <span class="keywordtype">string</span> <a class="code" href="class_island_speciation_strategy.html#a2e62f197c3bcc0d40369ac7a7ea9ed31">island_ranking_method</a>; </div>
+<div class="line"><a name="l00038"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#adcdbda3a002564d49f286fb2699f37f5">   38</a></span>&#160;        <span class="keywordtype">string</span> <a class="code" href="class_island_speciation_strategy.html#adcdbda3a002564d49f286fb2699f37f5">repopulation_method</a>; </div>
+<div class="line"><a name="l00040"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#acf9f4b165c831eada8b46224eab05443">   40</a></span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#acf9f4b165c831eada8b46224eab05443">extinction_event_generation_number</a>; </div>
+<div class="line"><a name="l00041"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#af8729a80fa4e31059e5ae020476e5cd3">   41</a></span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#af8729a80fa4e31059e5ae020476e5cd3">repopulation_mutations</a>; </div>
+<div class="line"><a name="l00042"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#a51a285855bc78f42965b8d68a6e36257">   42</a></span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#a51a285855bc78f42965b8d68a6e36257">islands_to_exterminate</a>; </div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;        int32_t max_genomes;</div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160; </div>
+<div class="line"><a name="l00045"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">   45</a></span>&#160;        <span class="keywordtype">bool</span> <a class="code" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">seed_genome_was_minimal</a>; </div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;        <span class="keywordtype">bool</span> repeat_extinction;</div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;        <span class="comment">// int32_t worst_island;</span></div>
+<div class="line"><a name="l00052"></a><span class="lineno"><a class="line" href="class_island_speciation_strategy.html#a51947f81a70302a029b332b6d097beda">   52</a></span>&#160;<span class="comment"></span>        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;Island*&gt;</a> <a class="code" href="class_island_speciation_strategy.html#a51947f81a70302a029b332b6d097beda">islands</a>;</div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* global_best_genome;</div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;    </div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;        <span class="comment">//static void register_command_line_arguments();</span></div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;        <span class="comment">//static IslandSpeciationStrategy* generate_from_command_line();</span></div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160; </div>
+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;        <a class="code" href="class_island_speciation_strategy.html#a62a9572d5d379edd35bda87dc81b335d">IslandSpeciationStrategy</a>(int32_t _number_of_islands, int32_t _max_island_size, </div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;                                <span class="keywordtype">double</span> _mutation_rate, <span class="keywordtype">double</span> _intra_island_crossover_rate, </div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;                                <span class="keywordtype">double</span> _inter_island_crossover_rate, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *_seed_genome,</div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;                                <span class="keywordtype">string</span> _island_ranking_method, <span class="keywordtype">string</span> _repopulation_method,</div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;                                int32_t _extinction_event_generation_number, int32_t _repopulation_mutations,</div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;                                int32_t _islands_to_exterminate, int32_t _max_genomes,</div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;                                <span class="keywordtype">bool</span> _repeat_extinction, <span class="keywordtype">bool</span> <a class="code" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">seed_genome_was_minimal</a>);</div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;        </div>
+<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;        <a class="code" href="class_island_speciation_strategy.html#a62a9572d5d379edd35bda87dc81b335d">IslandSpeciationStrategy</a>(int32_t _number_of_islands, int32_t _max_island_size,</div>
+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;                                <span class="keywordtype">double</span> _mutation_rate, <span class="keywordtype">double</span> _intra_island_crossover_rate,</div>
+<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;                                <span class="keywordtype">double</span> _inter_island_crossover_rate, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *_seed_genome, </div>
+<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;                                <span class="keywordtype">string</span> _island_ranking_method, <span class="keywordtype">string</span> _repopulation_method,</div>
+<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;                                int32_t _extinction_event_generation_number, int32_t _repopulation_mutations,</div>
+<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;                                int32_t _islands_to_exterminate, <span class="keywordtype">bool</span> <a class="code" href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">seed_genome_was_minimal</a>, <span class="keyword">function</span>&lt;<span class="keywordtype">void</span> (<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*)&gt; &amp;modify);</div>
+<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;        </div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#a2b75aca60616268e4a6aee93ee4e5aee">get_generated_genomes</a>() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160; </div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#ab44e2abd372cd97932dd87ed1b9c62c2">get_inserted_genomes</a>() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160; </div>
+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_island_speciation_strategy.html#a4db5c946c86373cf256177b35553b808">get_best_fitness</a>();</div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160; </div>
+<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_island_speciation_strategy.html#a516627db390391867d6dd02f78e27caf">get_worst_fitness</a>();</div>
+<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160; </div>
+<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* <a class="code" href="class_island_speciation_strategy.html#a1a8a770c165b22a5070e11a3f579375e">get_best_genome</a>();</div>
+<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160; </div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* <a class="code" href="class_island_speciation_strategy.html#a563860351e5f176d539bc297949d490f">get_worst_genome</a>();</div>
+<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160; </div>
+<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;        <span class="keywordtype">bool</span> <a class="code" href="class_island_speciation_strategy.html#a57d264f45976d729bfb0a59129e1fd5a">islands_full</a>() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160; </div>
+<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#a6ae98982d01c68214e4bd703fe18146f">insert_genome</a>(<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* genome);</div>
+<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160; </div>
+<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;        int32_t <a class="code" href="class_island_speciation_strategy.html#a4103cc2b64eb18788c8c32118094645a">get_worst_island_by_best_genome</a>();</div>
+<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160; </div>
+<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int32_t&gt;</a> <a class="code" href="class_island_speciation_strategy.html#a4dc7a8138b13b6ca22acbe9038e90ae4">rank_islands</a>();</div>
+<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160; </div>
+<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* <a class="code" href="class_island_speciation_strategy.html#a1d209dc38c374ffcb8ac7c34f72b2ce9">generate_genome</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng_0_1, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <span class="keyword">function</span>&lt;<span class="keywordtype">void</span> (int32_t, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*)&gt; &amp;mutate, <span class="keyword">function</span>&lt;<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* (<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover);</div>
+<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160; </div>
+<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* generate_for_filled_island(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng_0_1, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <span class="keyword">function</span>&lt;<span class="keywordtype">void</span> (int32_t, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*)&gt; &amp;mutate, <span class="keyword">function</span>&lt;<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* (<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover);</div>
+<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_island_speciation_strategy.html#a4ba6785df117932f3c465cbc31a5ca3f">print</a>(<span class="keywordtype">string</span> indent = <span class="stringliteral">&quot;&quot;</span>) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160; </div>
+<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;        <span class="keywordtype">string</span> <a class="code" href="class_island_speciation_strategy.html#ae578a7475f4825a7fa7fbf70738070c5">get_strategy_information_headers</a>() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160; </div>
+<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;        <span class="keywordtype">string</span> <a class="code" href="class_island_speciation_strategy.html#a2b29208908a8a27a5693e27401790a97">get_strategy_information_values</a>() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160; </div>
+<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* <a class="code" href="class_island_speciation_strategy.html#aa26da7c800d7ab2b1299554a490deb4c">parents_repopulation</a>(<span class="keywordtype">string</span> method,<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng_0_1, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <span class="keyword">function</span>&lt;<span class="keywordtype">void</span> (int32_t, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*)&gt; &amp;mutate, <span class="keyword">function</span>&lt;<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* (<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover);</div>
+<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;       </div>
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+<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160; </div>
+<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* get_global_best_genome();</div>
+<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160; </div>
+<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;        <span class="keywordtype">void</span> set_erased_islands_status();</div>
+<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160; </div>
+<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;};</div>
+<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160; </div>
+<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160; </div>
+<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_island_speciation_strategy_html_af4c685f5be866da1bb4395506aec112e"><div class="ttname"><a href="class_island_speciation_strategy.html#af4c685f5be866da1bb4395506aec112e">IslandSpeciationStrategy::inter_island_crossover_rate</a></div><div class="ttdeci">double inter_island_crossover_rate</div><div class="ttdoc">How frequently to do inter-island crossovers.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:29</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_ac78b4a8411e69dfea9b0a7b5aa3e3d99"><div class="ttname"><a href="class_island_speciation_strategy.html#ac78b4a8411e69dfea9b0a7b5aa3e3d99">IslandSpeciationStrategy::max_island_size</a></div><div class="ttdeci">int32_t max_island_size</div><div class="ttdoc">the maximum number of genomes in an island.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:25</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a2b75aca60616268e4a6aee93ee4e5aee"><div class="ttname"><a href="class_island_speciation_strategy.html#a2b75aca60616268e4a6aee93ee4e5aee">IslandSpeciationStrategy::get_generated_genomes</a></div><div class="ttdeci">int32_t get_generated_genomes() const</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:132</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_aa5969191a3d5f23deea86d85c88292f0"><div class="ttname"><a href="class_island_speciation_strategy.html#aa5969191a3d5f23deea86d85c88292f0">IslandSpeciationStrategy::mutation_rate</a></div><div class="ttdeci">double mutation_rate</div><div class="ttdoc">How frequently to do mutations.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:27</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a2b29208908a8a27a5693e27401790a97"><div class="ttname"><a href="class_island_speciation_strategy.html#a2b29208908a8a27a5693e27401790a97">IslandSpeciationStrategy::get_strategy_information_values</a></div><div class="ttdeci">string get_strategy_information_values() const</div><div class="ttdoc">Gets speciation strategy information values for logs.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:560</div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_aab18708f4ad07f725782234e31ee011f"><div class="ttname"><a href="class_island_speciation_strategy.html#aab18708f4ad07f725782234e31ee011f">IslandSpeciationStrategy::generation_island</a></div><div class="ttdeci">int32_t generation_island</div><div class="ttdoc">Used to track which island to generate the next genome from.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:21</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_af8729a80fa4e31059e5ae020476e5cd3"><div class="ttname"><a href="class_island_speciation_strategy.html#af8729a80fa4e31059e5ae020476e5cd3">IslandSpeciationStrategy::repopulation_mutations</a></div><div class="ttdeci">int32_t repopulation_mutations</div><div class="ttdoc">When an island is erradicated, it is repopulated with copies of the best genome that have this number...</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:41</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a51947f81a70302a029b332b6d097beda"><div class="ttname"><a href="class_island_speciation_strategy.html#a51947f81a70302a029b332b6d097beda">IslandSpeciationStrategy::islands</a></div><div class="ttdeci">vector&lt; Island * &gt; islands</div><div class="ttdoc">All the islands which contain the genomes for this speciation strategy.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:52</div></div>
+<div class="ttc" id="afunction_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/utility/functional/function.html">std::function</a></div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
+<div class="ttc" id="aclass_speciation_strategy_html"><div class="ttname"><a href="class_speciation_strategy.html">SpeciationStrategy</a></div><div class="ttdef"><b>Definition:</b> speciation_strategy.hxx:13</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_acf9f4b165c831eada8b46224eab05443"><div class="ttname"><a href="class_island_speciation_strategy.html#acf9f4b165c831eada8b46224eab05443">IslandSpeciationStrategy::extinction_event_generation_number</a></div><div class="ttdeci">int32_t extinction_event_generation_number</div><div class="ttdoc">When EXAMM reaches this generation id, an extinction event will be triggered (i.e.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:40</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html"><div class="ttname"><a href="class_island_speciation_strategy.html">IslandSpeciationStrategy</a></div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:19</div></div>
+<div class="ttc" id="auniform_real_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a></div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_adcdbda3a002564d49f286fb2699f37f5"><div class="ttname"><a href="class_island_speciation_strategy.html#adcdbda3a002564d49f286fb2699f37f5">IslandSpeciationStrategy::repopulation_method</a></div><div class="ttdeci">string repopulation_method</div><div class="ttdoc">The method used to repopulate the island after being erased.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:38</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a7b3dd21a20e4a14aa2a0657c73c3d608"><div class="ttname"><a href="class_island_speciation_strategy.html#a7b3dd21a20e4a14aa2a0657c73c3d608">IslandSpeciationStrategy::seed_genome</a></div><div class="ttdeci">RNN_Genome * seed_genome</div><div class="ttdoc">keep a reference to the seed genome so we can re-use it across islands and not duplicate innovation n...</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:34</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_af5d118e77d6c24c328f8d477f776f15e"><div class="ttname"><a href="class_island_speciation_strategy.html#af5d118e77d6c24c328f8d477f776f15e">IslandSpeciationStrategy::inserted_genomes</a></div><div class="ttdeci">int32_t inserted_genomes</div><div class="ttdoc">How many genomes have been inserted into this speciatoin strategy.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:32</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a57d264f45976d729bfb0a59129e1fd5a"><div class="ttname"><a href="class_island_speciation_strategy.html#a57d264f45976d729bfb0a59129e1fd5a">IslandSpeciationStrategy::islands_full</a></div><div class="ttdeci">bool islands_full() const</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:179</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a6ae98982d01c68214e4bd703fe18146f"><div class="ttname"><a href="class_island_speciation_strategy.html#a6ae98982d01c68214e4bd703fe18146f">IslandSpeciationStrategy::insert_genome</a></div><div class="ttdeci">int32_t insert_genome(RNN_Genome *genome)</div><div class="ttdoc">Inserts a copy of the genome into one of the islands handled by this strategy, determined by the RNN_...</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:190</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a1a8a770c165b22a5070e11a3f579375e"><div class="ttname"><a href="class_island_speciation_strategy.html#a1a8a770c165b22a5070e11a3f579375e">IslandSpeciationStrategy::get_best_genome</a></div><div class="ttdeci">RNN_Genome * get_best_genome()</div><div class="ttdoc">Gets the best genome of all the islands.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:140</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a4dc7a8138b13b6ca22acbe9038e90ae4"><div class="ttname"><a href="class_island_speciation_strategy.html#a4dc7a8138b13b6ca22acbe9038e90ae4">IslandSpeciationStrategy::rank_islands</a></div><div class="ttdeci">vector&lt; int32_t &gt; rank_islands()</div><div class="ttdoc">rank the islands by their best fitness, the fitness of ranked islands are in descending order</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:258</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a51a285855bc78f42965b8d68a6e36257"><div class="ttname"><a href="class_island_speciation_strategy.html#a51a285855bc78f42965b8d68a6e36257">IslandSpeciationStrategy::islands_to_exterminate</a></div><div class="ttdeci">int32_t islands_to_exterminate</div><div class="ttdoc">When an extinction event is triggered, this is the number of islands that will be exterminated.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:42</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a1d209dc38c374ffcb8ac7c34f72b2ce9"><div class="ttname"><a href="class_island_speciation_strategy.html#a1d209dc38c374ffcb8ac7c34f72b2ce9">IslandSpeciationStrategy::generate_genome</a></div><div class="ttdeci">RNN_Genome * generate_genome(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, function&lt; void(int32_t, RNN_Genome *)&gt; &amp;mutate, function&lt; RNN_Genome *(RNN_Genome *, RNN_Genome *)&gt; &amp;crossover)</div><div class="ttdoc">Generates a new genome.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:299</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html"><div class="ttname"><a href="class_r_n_n___genome.html">RNN_Genome</a></div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:37</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a62a9572d5d379edd35bda87dc81b335d"><div class="ttname"><a href="class_island_speciation_strategy.html#a62a9572d5d379edd35bda87dc81b335d">IslandSpeciationStrategy::IslandSpeciationStrategy</a></div><div class="ttdeci">IslandSpeciationStrategy(int32_t _number_of_islands, int32_t _max_island_size, double _mutation_rate, double _intra_island_crossover_rate, double _inter_island_crossover_rate, RNN_Genome *_seed_genome, string _island_ranking_method, string _repopulation_method, int32_t _extinction_event_generation_number, int32_t _repopulation_mutations, int32_t _islands_to_exterminate, int32_t _max_genomes, bool _repeat_extinction, bool seed_genome_was_minimal)</div><div class="ttdoc">Creates a new IslandSpeciationStrategy.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:25</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_ae578a7475f4825a7fa7fbf70738070c5"><div class="ttname"><a href="class_island_speciation_strategy.html#ae578a7475f4825a7fa7fbf70738070c5">IslandSpeciationStrategy::get_strategy_information_headers</a></div><div class="ttdeci">string get_strategy_information_headers() const</div><div class="ttdoc">Gets speciation strategy information headers for logs.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:542</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a4db5c946c86373cf256177b35553b808"><div class="ttname"><a href="class_island_speciation_strategy.html#a4db5c946c86373cf256177b35553b808">IslandSpeciationStrategy::get_best_fitness</a></div><div class="ttdeci">double get_best_fitness()</div><div class="ttdoc">Gets the fitness of the best genome of all the islands.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:167</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_adf6fad09de8e0b8ccc927580e4bd68f4"><div class="ttname"><a href="class_island_speciation_strategy.html#adf6fad09de8e0b8ccc927580e4bd68f4">IslandSpeciationStrategy::number_of_islands</a></div><div class="ttdeci">int32_t number_of_islands</div><div class="ttdoc">the number of islands to have.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:23</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_ab44e2abd372cd97932dd87ed1b9c62c2"><div class="ttname"><a href="class_island_speciation_strategy.html#ab44e2abd372cd97932dd87ed1b9c62c2">IslandSpeciationStrategy::get_inserted_genomes</a></div><div class="ttdeci">int32_t get_inserted_genomes() const</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:136</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a563860351e5f176d539bc297949d490f"><div class="ttname"><a href="class_island_speciation_strategy.html#a563860351e5f176d539bc297949d490f">IslandSpeciationStrategy::get_worst_genome</a></div><div class="ttdeci">RNN_Genome * get_worst_genome()</div><div class="ttdoc">Gets the the worst genome of all the islands.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:145</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_aea495f09600ae8ab003e67957d174814"><div class="ttname"><a href="class_island_speciation_strategy.html#aea495f09600ae8ab003e67957d174814">IslandSpeciationStrategy::fill_island</a></div><div class="ttdeci">void fill_island(int32_t best_island)</div><div class="ttdoc">fill a island with the best island.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:615</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a60bc752d6262d42b1dd294d8c4da563d"><div class="ttname"><a href="class_island_speciation_strategy.html#a60bc752d6262d42b1dd294d8c4da563d">IslandSpeciationStrategy::intra_island_crossover_rate</a></div><div class="ttdeci">double intra_island_crossover_rate</div><div class="ttdoc">How frequently to do intra-island crossovers.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:28</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a4103cc2b64eb18788c8c32118094645a"><div class="ttname"><a href="class_island_speciation_strategy.html#a4103cc2b64eb18788c8c32118094645a">IslandSpeciationStrategy::get_worst_island_by_best_genome</a></div><div class="ttdeci">int32_t get_worst_island_by_best_genome()</div><div class="ttdoc">find the worst island in the population, the worst island's best genome is the worst among all the is...</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:242</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a0878978f59055a4a5a7aa54dc4b905a3"><div class="ttname"><a href="class_island_speciation_strategy.html#a0878978f59055a4a5a7aa54dc4b905a3">IslandSpeciationStrategy::generated_genomes</a></div><div class="ttdeci">int32_t generated_genomes</div><div class="ttdoc">How many genomes have been generated by this speciation strategy.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:31</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a4ba6785df117932f3c465cbc31a5ca3f"><div class="ttname"><a href="class_island_speciation_strategy.html#a4ba6785df117932f3c465cbc31a5ca3f">IslandSpeciationStrategy::print</a></div><div class="ttdeci">void print(string indent=&quot;&quot;) const</div><div class="ttdoc">Prints out all the island's populations.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:531</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_aa26da7c800d7ab2b1299554a490deb4c"><div class="ttname"><a href="class_island_speciation_strategy.html#aa26da7c800d7ab2b1299554a490deb4c">IslandSpeciationStrategy::parents_repopulation</a></div><div class="ttdeci">RNN_Genome * parents_repopulation(string method, uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, function&lt; void(int32_t, RNN_Genome *)&gt; &amp;mutate, function&lt; RNN_Genome *(RNN_Genome *, RNN_Genome *)&gt; &amp;crossover)</div><div class="ttdoc">Island repopulation through two random parents from two seperate islands, parents can be random genom...</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:573</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a2001746533019215214d281f5a62fee2"><div class="ttname"><a href="class_island_speciation_strategy.html#a2001746533019215214d281f5a62fee2">IslandSpeciationStrategy::seed_genome_was_minimal</a></div><div class="ttdeci">bool seed_genome_was_minimal</div><div class="ttdoc">is true if we passed in a minimal genome (i.e., are not using transfer learning)</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:45</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a516627db390391867d6dd02f78e27caf"><div class="ttname"><a href="class_island_speciation_strategy.html#a516627db390391867d6dd02f78e27caf">IslandSpeciationStrategy::get_worst_fitness</a></div><div class="ttdeci">double get_worst_fitness()</div><div class="ttdoc">Gets the fitness of the worst genome of all the islands.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.cxx:173</div></div>
+<div class="ttc" id="aclass_island_speciation_strategy_html_a2e62f197c3bcc0d40369ac7a7ea9ed31"><div class="ttname"><a href="class_island_speciation_strategy.html#a2e62f197c3bcc0d40369ac7a7ea9ed31">IslandSpeciationStrategy::island_ranking_method</a></div><div class="ttdeci">string island_ranking_method</div><div class="ttdoc">The method used to find the worst island in population.</div><div class="ttdef"><b>Definition:</b> island_speciation_strategy.hxx:36</div></div>
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s=[],n=this;return e=t.extend({element:this.element,classes:this.options.classes||{}},e),this._on(e.element,{remove:"_untrackClassesElement"}),e.keys&&i(e.keys.match(/\S+/g)||[],!0),e.extra&&i(e.extra.match(/\S+/g)||[]),s.join(" ")},_untrackClassesElement:function(e){var i=this;t.each(i.classesElementLookup,function(s,n){-1!==t.inArray(e.target,n)&&(i.classesElementLookup[s]=t(n.not(e.target).get()))})},_removeClass:function(t,e,i){return this._toggleClass(t,e,i,!1)},_addClass:function(t,e,i){return this._toggleClass(t,e,i,!0)},_toggleClass:function(t,e,i,s){s="boolean"==typeof s?s:i;var n="string"==typeof t||null===t,o={extra:n?e:i,keys:n?t:e,element:n?this.element:t,add:s};return o.element.toggleClass(this._classes(o),s),this},_on:function(e,i,s){var n,o=this;"boolean"!=typeof e&&(s=i,i=e,e=!1),s?(i=n=t(i),this.bindings=this.bindings.add(i)):(s=i,i=this.element,n=this.widget()),t.each(s,function(s,a){function r(){return e||o.options.disabled!==!0&&!t(this).hasClass("ui-state-disabled")?("string"==typeof a?o[a]:a).apply(o,arguments):void 0}"string"!=typeof a&&(r.guid=a.guid=a.guid||r.guid||t.guid++);var h=s.match(/^([\w:-]*)\s*(.*)$/),l=h[1]+o.eventNamespace,c=h[2];c?n.on(l,c,r):i.on(l,r)})},_off:function(e,i){i=(i||"").split(" ").join(this.eventNamespace+" ")+this.eventNamespace,e.off(i).off(i),this.bindings=t(this.bindings.not(e).get()),this.focusable=t(this.focusable.not(e).get()),this.hoverable=t(this.hoverable.not(e).get())},_delay:function(t,e){function i(){return("string"==typeof t?s[t]:t).apply(s,arguments)}var s=this;return setTimeout(i,e||0)},_hoverable:function(e){this.hoverable=this.hoverable.add(e),this._on(e,{mouseenter:function(e){this._addClass(t(e.currentTarget),null,"ui-state-hover")},mouseleave:function(e){this._removeClass(t(e.currentTarget),null,"ui-state-hover")}})},_focusable:function(e){this.focusable=this.focusable.add(e),this._on(e,{focusin:function(e){this._addClass(t(e.currentTarget),null,"ui-state-focus")},focusout:function(e){this._removeClass(t(e.currentTarget),null,"ui-state-focus")}})},_trigger:function(e,i,s){var n,o,a=this.options[e];if(s=s||{},i=t.Event(i),i.type=(e===this.widgetEventPrefix?e:this.widgetEventPrefix+e).toLowerCase(),i.target=this.element[0],o=i.originalEvent)for(n in o)n in i||(i[n]=o[n]);return this.element.trigger(i,s),!(t.isFunction(a)&&a.apply(this.element[0],[i].concat(s))===!1||i.isDefaultPrevented())}},t.each({show:"fadeIn",hide:"fadeOut"},function(e,i){t.Widget.prototype["_"+e]=function(s,n,o){"string"==typeof n&&(n={effect:n});var a,r=n?n===!0||"number"==typeof n?i:n.effect||i:e;n=n||{},"number"==typeof n&&(n={duration:n}),a=!t.isEmptyObject(n),n.complete=o,n.delay&&s.delay(n.delay),a&&t.effects&&t.effects.effect[r]?s[e](n):r!==e&&s[r]?s[r](n.duration,n.easing,o):s.queue(function(i){t(this)[e](),o&&o.call(s[0]),i()})}}),t.widget,function(){function e(t,e,i){return[parseFloat(t[0])*(u.test(t[0])?e/100:1),parseFloat(t[1])*(u.test(t[1])?i/100:1)]}function i(e,i){return parseInt(t.css(e,i),10)||0}function s(e){var i=e[0];return 9===i.nodeType?{width:e.width(),height:e.height(),offset:{top:0,left:0}}:t.isWindow(i)?{width:e.width(),height:e.height(),offset:{top:e.scrollTop(),left:e.scrollLeft()}}:i.preventDefault?{width:0,height:0,offset:{top:i.pageY,left:i.pageX}}:{width:e.outerWidth(),height:e.outerHeight(),offset:e.offset()}}var n,o=Math.max,a=Math.abs,r=/left|center|right/,h=/top|center|bottom/,l=/[\+\-]\d+(\.[\d]+)?%?/,c=/^\w+/,u=/%$/,d=t.fn.position;t.position={scrollbarWidth:function(){if(void 0!==n)return n;var e,i,s=t("<div style='display:block;position:absolute;width:50px;height:50px;overflow:hidden;'><div style='height:100px;width:auto;'></div></div>"),o=s.children()[0];return t("body").append(s),e=o.offsetWidth,s.css("overflow","scroll"),i=o.offsetWidth,e===i&&(i=s[0].clientWidth),s.remove(),n=e-i},getScrollInfo:function(e){var i=e.isWindow||e.isDocument?"":e.element.css("overflow-x"),s=e.isWindow||e.isDocument?"":e.element.css("overflow-y"),n="scroll"===i||"auto"===i&&e.width<e.element[0].scrollWidth,o="scroll"===s||"auto"===s&&e.height<e.element[0].scrollHeight;return{width:o?t.position.scrollbarWidth():0,height:n?t.position.scrollbarWidth():0}},getWithinInfo:function(e){var i=t(e||window),s=t.isWindow(i[0]),n=!!i[0]&&9===i[0].nodeType,o=!s&&!n;return{element:i,isWindow:s,isDocument:n,offset:o?t(e).offset():{left:0,top:0},scrollLeft:i.scrollLeft(),scrollTop:i.scrollTop(),width:i.outerWidth(),height:i.outerHeight()}}},t.fn.position=function(n){if(!n||!n.of)return d.apply(this,arguments);n=t.extend({},n);var u,p,f,m,g,_,v=t(n.of),b=t.position.getWithinInfo(n.within),y=t.position.getScrollInfo(b),w=(n.collision||"flip").split(" "),x={};return _=s(v),v[0].preventDefault&&(n.at="left top"),p=_.width,f=_.height,m=_.offset,g=t.extend({},m),t.each(["my","at"],function(){var t,e,i=(n[this]||"").split(" ");1===i.length&&(i=r.test(i[0])?i.concat(["center"]):h.test(i[0])?["center"].concat(i):["center","center"]),i[0]=r.test(i[0])?i[0]:"center",i[1]=h.test(i[1])?i[1]:"center",t=l.exec(i[0]),e=l.exec(i[1]),x[this]=[t?t[0]:0,e?e[0]:0],n[this]=[c.exec(i[0])[0],c.exec(i[1])[0]]}),1===w.length&&(w[1]=w[0]),"right"===n.at[0]?g.left+=p:"center"===n.at[0]&&(g.left+=p/2),"bottom"===n.at[1]?g.top+=f:"center"===n.at[1]&&(g.top+=f/2),u=e(x.at,p,f),g.left+=u[0],g.top+=u[1],this.each(function(){var s,r,h=t(this),l=h.outerWidth(),c=h.outerHeight(),d=i(this,"marginLeft"),_=i(this,"marginTop"),k=l+d+i(this,"marginRight")+y.width,C=c+_+i(this,"marginBottom")+y.height,D=t.extend({},g),T=e(x.my,h.outerWidth(),h.outerHeight());"right"===n.my[0]?D.left-=l:"center"===n.my[0]&&(D.left-=l/2),"bottom"===n.my[1]?D.top-=c:"center"===n.my[1]&&(D.top-=c/2),D.left+=T[0],D.top+=T[1],s={marginLeft:d,marginTop:_},t.each(["left","top"],function(e,i){t.ui.position[w[e]]&&t.ui.position[w[e]][i](D,{targetWidth:p,targetHeight:f,elemWidth:l,elemHeight:c,collisionPosition:s,collisionWidth:k,collisionHeight:C,offset:[u[0]+T[0],u[1]+T[1]],my:n.my,at:n.at,within:b,elem:h})}),n.using&&(r=function(t){var e=m.left-D.left,i=e+p-l,s=m.top-D.top,r=s+f-c,u={target:{element:v,left:m.left,top:m.top,width:p,height:f},element:{element:h,left:D.left,top:D.top,width:l,height:c},horizontal:0>i?"left":e>0?"right":"center",vertical:0>r?"top":s>0?"bottom":"middle"};l>p&&p>a(e+i)&&(u.horizontal="center"),c>f&&f>a(s+r)&&(u.vertical="middle"),u.important=o(a(e),a(i))>o(a(s),a(r))?"horizontal":"vertical",n.using.call(this,t,u)}),h.offset(t.extend(D,{using:r}))})},t.ui.position={fit:{left:function(t,e){var i,s=e.within,n=s.isWindow?s.scrollLeft:s.offset.left,a=s.width,r=t.left-e.collisionPosition.marginLeft,h=n-r,l=r+e.collisionWidth-a-n;e.collisionWidth>a?h>0&&0>=l?(i=t.left+h+e.collisionWidth-a-n,t.left+=h-i):t.left=l>0&&0>=h?n:h>l?n+a-e.collisionWidth:n:h>0?t.left+=h:l>0?t.left-=l:t.left=o(t.left-r,t.left)},top:function(t,e){var i,s=e.within,n=s.isWindow?s.scrollTop:s.offset.top,a=e.within.height,r=t.top-e.collisionPosition.marginTop,h=n-r,l=r+e.collisionHeight-a-n;e.collisionHeight>a?h>0&&0>=l?(i=t.top+h+e.collisionHeight-a-n,t.top+=h-i):t.top=l>0&&0>=h?n:h>l?n+a-e.collisionHeight:n:h>0?t.top+=h:l>0?t.top-=l:t.top=o(t.top-r,t.top)}},flip:{left:function(t,e){var i,s,n=e.within,o=n.offset.left+n.scrollLeft,r=n.width,h=n.isWindow?n.scrollLeft:n.offset.left,l=t.left-e.collisionPosition.marginLeft,c=l-h,u=l+e.collisionWidth-r-h,d="left"===e.my[0]?-e.elemWidth:"right"===e.my[0]?e.elemWidth:0,p="left"===e.at[0]?e.targetWidth:"right"===e.at[0]?-e.targetWidth:0,f=-2*e.offset[0];0>c?(i=t.left+d+p+f+e.collisionWidth-r-o,(0>i||a(c)>i)&&(t.left+=d+p+f)):u>0&&(s=t.left-e.collisionPosition.marginLeft+d+p+f-h,(s>0||u>a(s))&&(t.left+=d+p+f))},top:function(t,e){var i,s,n=e.within,o=n.offset.top+n.scrollTop,r=n.height,h=n.isWindow?n.scrollTop:n.offset.top,l=t.top-e.collisionPosition.marginTop,c=l-h,u=l+e.collisionHeight-r-h,d="top"===e.my[1],p=d?-e.elemHeight:"bottom"===e.my[1]?e.elemHeight:0,f="top"===e.at[1]?e.targetHeight:"bottom"===e.at[1]?-e.targetHeight:0,m=-2*e.offset[1];0>c?(s=t.top+p+f+m+e.collisionHeight-r-o,(0>s||a(c)>s)&&(t.top+=p+f+m)):u>0&&(i=t.top-e.collisionPosition.marginTop+p+f+m-h,(i>0||u>a(i))&&(t.top+=p+f+m))}},flipfit:{left:function(){t.ui.position.flip.left.apply(this,arguments),t.ui.position.fit.left.apply(this,arguments)},top:function(){t.ui.position.flip.top.apply(this,arguments),t.ui.position.fit.top.apply(this,arguments)}}}}(),t.ui.position,t.extend(t.expr[":"],{data:t.expr.createPseudo?t.expr.createPseudo(function(e){return function(i){return!!t.data(i,e)}}):function(e,i,s){return!!t.data(e,s[3])}}),t.fn.extend({disableSelection:function(){var t="onselectstart"in 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i=e.data("ui-form-reset-instances");t.each(i,function(){this.refresh()})})},_bindFormResetHandler:function(){if(this.form=this.element.form(),this.form.length){var t=this.form.data("ui-form-reset-instances")||[];t.length||this.form.on("reset.ui-form-reset",this._formResetHandler),t.push(this),this.form.data("ui-form-reset-instances",t)}},_unbindFormResetHandler:function(){if(this.form.length){var e=this.form.data("ui-form-reset-instances");e.splice(t.inArray(this,e),1),e.length?this.form.data("ui-form-reset-instances",e):this.form.removeData("ui-form-reset-instances").off("reset.ui-form-reset")}}},"1.7"===t.fn.jquery.substring(0,3)&&(t.each(["Width","Height"],function(e,i){function s(e,i,s,o){return t.each(n,function(){i-=parseFloat(t.css(e,"padding"+this))||0,s&&(i-=parseFloat(t.css(e,"border"+this+"Width"))||0),o&&(i-=parseFloat(t.css(e,"margin"+this))||0)}),i}var n="Width"===i?["Left","Right"]:["Top","Bottom"],o=i.toLowerCase(),a={innerWidth:t.fn.innerWidth,innerHeight:t.fn.innerHeight,outerWidth:t.fn.outerWidth,outerHeight:t.fn.outerHeight};t.fn["inner"+i]=function(e){return void 0===e?a["inner"+i].call(this):this.each(function(){t(this).css(o,s(this,e)+"px")})},t.fn["outer"+i]=function(e,n){return"number"!=typeof e?a["outer"+i].call(this,e):this.each(function(){t(this).css(o,s(this,e,!0,n)+"px")})}}),t.fn.addBack=function(t){return this.add(null==t?this.prevObject:this.prevObject.filter(t))}),t.ui.keyCode={BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38},t.ui.escapeSelector=function(){var t=/([!"#$%&'()*+,./:;<=>?@[\]^`{|}~])/g;return function(e){return e.replace(t,"\\$1")}}(),t.fn.labels=function(){var e,i,s,n,o;return this[0].labels&&this[0].labels.length?this.pushStack(this[0].labels):(n=this.eq(0).parents("label"),s=this.attr("id"),s&&(e=this.eq(0).parents().last(),o=e.add(e.length?e.siblings():this.siblings()),i="label[for='"+t.ui.escapeSelector(s)+"']",n=n.add(o.find(i).addBack(i))),this.pushStack(n))},t.fn.scrollParent=function(e){var i=this.css("position"),s="absolute"===i,n=e?/(auto|scroll|hidden)/:/(auto|scroll)/,o=this.parents().filter(function(){var e=t(this);return s&&"static"===e.css("position")?!1:n.test(e.css("overflow")+e.css("overflow-y")+e.css("overflow-x"))}).eq(0);return"fixed"!==i&&o.length?o:t(this[0].ownerDocument||document)},t.extend(t.expr[":"],{tabbable:function(e){var i=t.attr(e,"tabindex"),s=null!=i;return(!s||i>=0)&&t.ui.focusable(e,s)}}),t.fn.extend({uniqueId:function(){var t=0;return function(){return this.each(function(){this.id||(this.id="ui-id-"+ ++t)})}}(),removeUniqueId:function(){return this.each(function(){/^ui-id-\d+$/.test(this.id)&&t(this).removeAttr("id")})}}),t.ui.ie=!!/msie [\w.]+/.exec(navigator.userAgent.toLowerCase());var n=!1;t(document).on("mouseup",function(){n=!1}),t.widget("ui.mouse",{version:"1.12.1",options:{cancel:"input, textarea, button, select, option",distance:1,delay:0},_mouseInit:function(){var e=this;this.element.on("mousedown."+this.widgetName,function(t){return e._mouseDown(t)}).on("click."+this.widgetName,function(i){return!0===t.data(i.target,e.widgetName+".preventClickEvent")?(t.removeData(i.target,e.widgetName+".preventClickEvent"),i.stopImmediatePropagation(),!1):void 0}),this.started=!1},_mouseDestroy:function(){this.element.off("."+this.widgetName),this._mouseMoveDelegate&&this.document.off("mousemove."+this.widgetName,this._mouseMoveDelegate).off("mouseup."+this.widgetName,this._mouseUpDelegate)},_mouseDown:function(e){if(!n){this._mouseMoved=!1,this._mouseStarted&&this._mouseUp(e),this._mouseDownEvent=e;var i=this,s=1===e.which,o="string"==typeof this.options.cancel&&e.target.nodeName?t(e.target).closest(this.options.cancel).length:!1;return s&&!o&&this._mouseCapture(e)?(this.mouseDelayMet=!this.options.delay,this.mouseDelayMet||(this._mouseDelayTimer=setTimeout(function(){i.mouseDelayMet=!0},this.options.delay)),this._mouseDistanceMet(e)&&this._mouseDelayMet(e)&&(this._mouseStarted=this._mouseStart(e)!==!1,!this._mouseStarted)?(e.preventDefault(),!0):(!0===t.data(e.target,this.widgetName+".preventClickEvent")&&t.removeData(e.target,this.widgetName+".preventClickEvent"),this._mouseMoveDelegate=function(t){return i._mouseMove(t)},this._mouseUpDelegate=function(t){return i._mouseUp(t)},this.document.on("mousemove."+this.widgetName,this._mouseMoveDelegate).on("mouseup."+this.widgetName,this._mouseUpDelegate),e.preventDefault(),n=!0,!0)):!0}},_mouseMove:function(e){if(this._mouseMoved){if(t.ui.ie&&(!document.documentMode||9>document.documentMode)&&!e.button)return this._mouseUp(e);if(!e.which)if(e.originalEvent.altKey||e.originalEvent.ctrlKey||e.originalEvent.metaKey||e.originalEvent.shiftKey)this.ignoreMissingWhich=!0;else if(!this.ignoreMissingWhich)return this._mouseUp(e)}return(e.which||e.button)&&(this._mouseMoved=!0),this._mouseStarted?(this._mouseDrag(e),e.preventDefault()):(this._mouseDistanceMet(e)&&this._mouseDelayMet(e)&&(this._mouseStarted=this._mouseStart(this._mouseDownEvent,e)!==!1,this._mouseStarted?this._mouseDrag(e):this._mouseUp(e)),!this._mouseStarted)},_mouseUp:function(e){this.document.off("mousemove."+this.widgetName,this._mouseMoveDelegate).off("mouseup."+this.widgetName,this._mouseUpDelegate),this._mouseStarted&&(this._mouseStarted=!1,e.target===this._mouseDownEvent.target&&t.data(e.target,this.widgetName+".preventClickEvent",!0),this._mouseStop(e)),this._mouseDelayTimer&&(clearTimeout(this._mouseDelayTimer),delete this._mouseDelayTimer),this.ignoreMissingWhich=!1,n=!1,e.preventDefault()},_mouseDistanceMet:function(t){return Math.max(Math.abs(this._mouseDownEvent.pageX-t.pageX),Math.abs(this._mouseDownEvent.pageY-t.pageY))>=this.options.distance},_mouseDelayMet:function(){return this.mouseDelayMet},_mouseStart:function(){},_mouseDrag:function(){},_mouseStop:function(){},_mouseCapture:function(){return!0}}),t.ui.plugin={add:function(e,i,s){var n,o=t.ui[e].prototype;for(n in s)o.plugins[n]=o.plugins[n]||[],o.plugins[n].push([i,s[n]])},call:function(t,e,i,s){var n,o=t.plugins[e];if(o&&(s||t.element[0].parentNode&&11!==t.element[0].parentNode.nodeType))for(n=0;o.length>n;n++)t.options[o[n][0]]&&o[n][1].apply(t.element,i)}},t.widget("ui.resizable",t.ui.mouse,{version:"1.12.1",widgetEventPrefix:"resize",options:{alsoResize:!1,animate:!1,animateDuration:"slow",animateEasing:"swing",aspectRatio:!1,autoHide:!1,classes:{"ui-resizable-se":"ui-icon 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hidden;'></div>").css({position:this.element.css("position"),width:this.element.outerWidth(),height:this.element.outerHeight(),top:this.element.css("top"),left:this.element.css("left")})),this.element=this.element.parent().data("ui-resizable",this.element.resizable("instance")),this.elementIsWrapper=!0,e={marginTop:this.originalElement.css("marginTop"),marginRight:this.originalElement.css("marginRight"),marginBottom:this.originalElement.css("marginBottom"),marginLeft:this.originalElement.css("marginLeft")},this.element.css(e),this.originalElement.css("margin",0),this.originalResizeStyle=this.originalElement.css("resize"),this.originalElement.css("resize","none"),this._proportionallyResizeElements.push(this.originalElement.css({position:"static",zoom:1,display:"block"})),this.originalElement.css(e),this._proportionallyResize()),this._setupHandles(),i.autoHide&&t(this.element).on("mouseenter",function(){i.disabled||(s._removeClass("ui-resizable-autohide"),s._handles.show())}).on("mouseleave",function(){i.disabled||s.resizing||(s._addClass("ui-resizable-autohide"),s._handles.hide())}),this._mouseInit()},_destroy:function(){this._mouseDestroy();var e,i=function(e){t(e).removeData("resizable").removeData("ui-resizable").off(".resizable").find(".ui-resizable-handle").remove()};return this.elementIsWrapper&&(i(this.element),e=this.element,this.originalElement.css({position:e.css("position"),width:e.outerWidth(),height:e.outerHeight(),top:e.css("top"),left:e.css("left")}).insertAfter(e),e.remove()),this.originalElement.css("resize",this.originalResizeStyle),i(this.originalElement),this},_setOption:function(t,e){switch(this._super(t,e),t){case"handles":this._removeHandles(),this._setupHandles();break;default:}},_setupHandles:function(){var e,i,s,n,o,a=this.options,r=this;if(this.handles=a.handles||(t(".ui-resizable-handle",this.element).length?{n:".ui-resizable-n",e:".ui-resizable-e",s:".ui-resizable-s",w:".ui-resizable-w",se:".ui-resizable-se",sw:".ui-resizable-sw",ne:".ui-resizable-ne",nw:".ui-resizable-nw"}:"e,s,se"),this._handles=t(),this.handles.constructor===String)for("all"===this.handles&&(this.handles="n,e,s,w,se,sw,ne,nw"),s=this.handles.split(","),this.handles={},i=0;s.length>i;i++)e=t.trim(s[i]),n="ui-resizable-"+e,o=t("<div>"),this._addClass(o,"ui-resizable-handle "+n),o.css({zIndex:a.zIndex}),this.handles[e]=".ui-resizable-"+e,this.element.append(o);this._renderAxis=function(e){var i,s,n,o;e=e||this.element;for(i in 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i,s,n=!1;for(i in this.handles)s=t(this.handles[i])[0],(s===e.target||t.contains(s,e.target))&&(n=!0);return!this.options.disabled&&n},_mouseStart:function(e){var i,s,n,o=this.options,a=this.element;return this.resizing=!0,this._renderProxy(),i=this._num(this.helper.css("left")),s=this._num(this.helper.css("top")),o.containment&&(i+=t(o.containment).scrollLeft()||0,s+=t(o.containment).scrollTop()||0),this.offset=this.helper.offset(),this.position={left:i,top:s},this.size=this._helper?{width:this.helper.width(),height:this.helper.height()}:{width:a.width(),height:a.height()},this.originalSize=this._helper?{width:a.outerWidth(),height:a.outerHeight()}:{width:a.width(),height:a.height()},this.sizeDiff={width:a.outerWidth()-a.width(),height:a.outerHeight()-a.height()},this.originalPosition={left:i,top:s},this.originalMousePosition={left:e.pageX,top:e.pageY},this.aspectRatio="number"==typeof 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+},_change:{e:function(t,e){return{width:this.originalSize.width+e}},w:function(t,e){var i=this.originalSize,s=this.originalPosition;return{left:s.left+e,width:i.width-e}},n:function(t,e,i){var s=this.originalSize,n=this.originalPosition;return{top:n.top+i,height:s.height-i}},s:function(t,e,i){return{height:this.originalSize.height+i}},se:function(e,i,s){return t.extend(this._change.s.apply(this,arguments),this._change.e.apply(this,[e,i,s]))},sw:function(e,i,s){return t.extend(this._change.s.apply(this,arguments),this._change.w.apply(this,[e,i,s]))},ne:function(e,i,s){return t.extend(this._change.n.apply(this,arguments),this._change.e.apply(this,[e,i,s]))},nw:function(e,i,s){return t.extend(this._change.n.apply(this,arguments),this._change.w.apply(this,[e,i,s]))}},_propagate:function(e,i){t.ui.plugin.call(this,e,[i,this.ui()]),"resize"!==e&&this._trigger(e,i,this.ui())},plugins:{},ui:function(){return{originalElement:this.originalElement,element:this.element,helper:this.helper,position:this.position,size:this.size,originalSize:this.originalSize,originalPosition:this.originalPosition}}}),t.ui.plugin.add("resizable","animate",{stop:function(e){var i=t(this).resizable("instance"),s=i.options,n=i._proportionallyResizeElements,o=n.length&&/textarea/i.test(n[0].nodeName),a=o&&i._hasScroll(n[0],"left")?0:i.sizeDiff.height,r=o?0:i.sizeDiff.width,h={width:i.size.width-r,height:i.size.height-a},l=parseFloat(i.element.css("left"))+(i.position.left-i.originalPosition.left)||null,c=parseFloat(i.element.css("top"))+(i.position.top-i.originalPosition.top)||null;i.element.animate(t.extend(h,c&&l?{top:c,left:l}:{}),{duration:s.animateDuration,easing:s.animateEasing,step:function(){var s={width:parseFloat(i.element.css("width")),height:parseFloat(i.element.css("height")),top:parseFloat(i.element.css("top")),left:parseFloat(i.element.css("left"))};n&&n.length&&t(n[0]).css({width:s.width,height:s.height}),i._updateCache(s),i._propagate("resize",e)}})}}),t.ui.plugin.add("resizable","containment",{start:function(){var e,i,s,n,o,a,r,h=t(this).resizable("instance"),l=h.options,c=h.element,u=l.containment,d=u instanceof t?u.get(0):/parent/.test(u)?c.parent().get(0):u;d&&(h.containerElement=t(d),/document/.test(u)||u===document?(h.containerOffset={left:0,top:0},h.containerPosition={left:0,top:0},h.parentData={element:t(document),left:0,top:0,width:t(document).width(),height:t(document).height()||document.body.parentNode.scrollHeight}):(e=t(d),i=[],t(["Top","Right","Left","Bottom"]).each(function(t,s){i[t]=h._num(e.css("padding"+s))}),h.containerOffset=e.offset(),h.containerPosition=e.position(),h.containerSize={height:e.innerHeight()-i[3],width:e.innerWidth()-i[1]},s=h.containerOffset,n=h.containerSize.height,o=h.containerSize.width,a=h._hasScroll(d,"left")?d.scrollWidth:o,r=h._hasScroll(d)?d.scrollHeight:n,h.parentData={element:d,left:s.left,top:s.top,width:a,height:r}))},resize:function(e){var i,s,n,o,a=t(this).resizable("instance"),r=a.options,h=a.containerOffset,l=a.position,c=a._aspectRatio||e.shiftKey,u={top:0,left:0},d=a.containerElement,p=!0;d[0]!==document&&/static/.test(d.css("position"))&&(u=h),l.left<(a._helper?h.left:0)&&(a.size.width=a.size.width+(a._helper?a.position.left-h.left:a.position.left-u.left),c&&(a.size.height=a.size.width/a.aspectRatio,p=!1),a.position.left=r.helper?h.left:0),l.top<(a._helper?h.top:0)&&(a.size.height=a.size.height+(a._helper?a.position.top-h.top:a.position.top),c&&(a.size.width=a.size.height*a.aspectRatio,p=!1),a.position.top=a._helper?h.top:0),n=a.containerElement.get(0)===a.element.parent().get(0),o=/relative|absolute/.test(a.containerElement.css("position")),n&&o?(a.offset.left=a.parentData.left+a.position.left,a.offset.top=a.parentData.top+a.position.top):(a.offset.left=a.element.offset().left,a.offset.top=a.element.offset().top),i=Math.abs(a.sizeDiff.width+(a._helper?a.offset.left-u.left:a.offset.left-h.left)),s=Math.abs(a.sizeDiff.height+(a._helper?a.offset.top-u.top:a.offset.top-h.top)),i+a.size.width>=a.parentData.width&&(a.size.width=a.parentData.width-i,c&&(a.size.height=a.size.width/a.aspectRatio,p=!1)),s+a.size.height>=a.parentData.height&&(a.size.height=a.parentData.height-s,c&&(a.size.width=a.size.height*a.aspectRatio,p=!1)),p||(a.position.left=a.prevPosition.left,a.position.top=a.prevPosition.top,a.size.width=a.prevSize.width,a.size.height=a.prevSize.height)},stop:function(){var e=t(this).resizable("instance"),i=e.options,s=e.containerOffset,n=e.containerPosition,o=e.containerElement,a=t(e.helper),r=a.offset(),h=a.outerWidth()-e.sizeDiff.width,l=a.outerHeight()-e.sizeDiff.height;e._helper&&!i.animate&&/relative/.test(o.css("position"))&&t(this).css({left:r.left-n.left-s.left,width:h,height:l}),e._helper&&!i.animate&&/static/.test(o.css("position"))&&t(this).css({left:r.left-n.left-s.left,width:h,height:l})}}),t.ui.plugin.add("resizable","alsoResize",{start:function(){var e=t(this).resizable("instance"),i=e.options;t(i.alsoResize).each(function(){var e=t(this);e.data("ui-resizable-alsoresize",{width:parseFloat(e.width()),height:parseFloat(e.height()),left:parseFloat(e.css("left")),top:parseFloat(e.css("top"))})})},resize:function(e,i){var s=t(this).resizable("instance"),n=s.options,o=s.originalSize,a=s.originalPosition,r={height:s.size.height-o.height||0,width:s.size.width-o.width||0,top:s.position.top-a.top||0,left:s.position.left-a.left||0};t(n.alsoResize).each(function(){var e=t(this),s=t(this).data("ui-resizable-alsoresize"),n={},o=e.parents(i.originalElement[0]).length?["width","height"]:["width","height","top","left"];t.each(o,function(t,e){var i=(s[e]||0)+(r[e]||0);i&&i>=0&&(n[e]=i||null)}),e.css(n)})},stop:function(){t(this).removeData("ui-resizable-alsoresize")}}),t.ui.plugin.add("resizable","ghost",{start:function(){var e=t(this).resizable("instance"),i=e.size;e.ghost=e.originalElement.clone(),e.ghost.css({opacity:.25,display:"block",position:"relative",height:i.height,width:i.width,margin:0,left:0,top:0}),e._addClass(e.ghost,"ui-resizable-ghost"),t.uiBackCompat!==!1&&"string"==typeof e.options.ghost&&e.ghost.addClass(this.options.ghost),e.ghost.appendTo(e.helper)},resize:function(){var e=t(this).resizable("instance");e.ghost&&e.ghost.css({position:"relative",height:e.size.height,width:e.size.width})},stop:function(){var e=t(this).resizable("instance");e.ghost&&e.helper&&e.helper.get(0).removeChild(e.ghost.get(0))}}),t.ui.plugin.add("resizable","grid",{resize:function(){var e,i=t(this).resizable("instance"),s=i.options,n=i.size,o=i.originalSize,a=i.originalPosition,r=i.axis,h="number"==typeof s.grid?[s.grid,s.grid]:s.grid,l=h[0]||1,c=h[1]||1,u=Math.round((n.width-o.width)/l)*l,d=Math.round((n.height-o.height)/c)*c,p=o.width+u,f=o.height+d,m=s.maxWidth&&p>s.maxWidth,g=s.maxHeight&&f>s.maxHeight,_=s.minWidth&&s.minWidth>p,v=s.minHeight&&s.minHeight>f;s.grid=h,_&&(p+=l),v&&(f+=c),m&&(p-=l),g&&(f-=c),/^(se|s|e)$/.test(r)?(i.size.width=p,i.size.height=f):/^(ne)$/.test(r)?(i.size.width=p,i.size.height=f,i.position.top=a.top-d):/^(sw)$/.test(r)?(i.size.width=p,i.size.height=f,i.position.left=a.left-u):((0>=f-c||0>=p-l)&&(e=i._getPaddingPlusBorderDimensions(this)),f-c>0?(i.size.height=f,i.position.top=a.top-d):(f=c-e.height,i.size.height=f,i.position.top=a.top+o.height-f),p-l>0?(i.size.width=p,i.position.left=a.left-u):(p=l-e.width,i.size.width=p,i.position.left=a.left+o.width-p))}}),t.ui.resizable});/**
+ * Copyright (c) 2007 Ariel Flesler - aflesler ○ gmail • com | https://github.com/flesler
+ * Licensed under MIT
+ * @author Ariel Flesler
+ * @version 2.1.2
+ */
+;(function(f){"use strict";"function"===typeof define&&define.amd?define(["jquery"],f):"undefined"!==typeof module&&module.exports?module.exports=f(require("jquery")):f(jQuery)})(function($){"use strict";function n(a){return!a.nodeName||-1!==$.inArray(a.nodeName.toLowerCase(),["iframe","#document","html","body"])}function h(a){return $.isFunction(a)||$.isPlainObject(a)?a:{top:a,left:a}}var p=$.scrollTo=function(a,d,b){return $(window).scrollTo(a,d,b)};p.defaults={axis:"xy",duration:0,limit:!0};$.fn.scrollTo=function(a,d,b){"object"=== typeof d&&(b=d,d=0);"function"===typeof b&&(b={onAfter:b});"max"===a&&(a=9E9);b=$.extend({},p.defaults,b);d=d||b.duration;var u=b.queue&&1<b.axis.length;u&&(d/=2);b.offset=h(b.offset);b.over=h(b.over);return this.each(function(){function k(a){var k=$.extend({},b,{queue:!0,duration:d,complete:a&&function(){a.call(q,e,b)}});r.animate(f,k)}if(null!==a){var l=n(this),q=l?this.contentWindow||window:this,r=$(q),e=a,f={},t;switch(typeof e){case "number":case "string":if(/^([+-]=?)?\d+(\.\d+)?(px|%)?$/.test(e)){e= h(e);break}e=l?$(e):$(e,q);case "object":if(e.length===0)return;if(e.is||e.style)t=(e=$(e)).offset()}var v=$.isFunction(b.offset)&&b.offset(q,e)||b.offset;$.each(b.axis.split(""),function(a,c){var d="x"===c?"Left":"Top",m=d.toLowerCase(),g="scroll"+d,h=r[g](),n=p.max(q,c);t?(f[g]=t[m]+(l?0:h-r.offset()[m]),b.margin&&(f[g]-=parseInt(e.css("margin"+d),10)||0,f[g]-=parseInt(e.css("border"+d+"Width"),10)||0),f[g]+=v[m]||0,b.over[m]&&(f[g]+=e["x"===c?"width":"height"]()*b.over[m])):(d=e[m],f[g]=d.slice&& "%"===d.slice(-1)?parseFloat(d)/100*n:d);b.limit&&/^\d+$/.test(f[g])&&(f[g]=0>=f[g]?0:Math.min(f[g],n));!a&&1<b.axis.length&&(h===f[g]?f={}:u&&(k(b.onAfterFirst),f={}))});k(b.onAfter)}})};p.max=function(a,d){var b="x"===d?"Width":"Height",h="scroll"+b;if(!n(a))return a[h]-$(a)[b.toLowerCase()]();var b="client"+b,k=a.ownerDocument||a.document,l=k.documentElement,k=k.body;return Math.max(l[h],k[h])-Math.min(l[b],k[b])};$.Tween.propHooks.scrollLeft=$.Tween.propHooks.scrollTop={get:function(a){return $(a.elem)[a.prop]()}, set:function(a){var d=this.get(a);if(a.options.interrupt&&a._last&&a._last!==d)return $(a.elem).stop();var b=Math.round(a.now);d!==b&&($(a.elem)[a.prop](b),a._last=this.get(a))}};return p});
+/*!
+ PowerTip v1.3.1 (2018-04-15)
+ https://stevenbenner.github.io/jquery-powertip/
+ Copyright (c) 2018 Steven Benner (http://stevenbenner.com/).
+ Released under MIT license.
+ https://raw.github.com/stevenbenner/jquery-powertip/master/LICENSE.txt
+*/
+(function(root,factory){if(typeof define==="function"&&define.amd){define(["jquery"],factory)}else if(typeof module==="object"&&module.exports){module.exports=factory(require("jquery"))}else{factory(root.jQuery)}})(this,function($){var $document=$(document),$window=$(window),$body=$("body");var DATA_DISPLAYCONTROLLER="displayController",DATA_HASACTIVEHOVER="hasActiveHover",DATA_FORCEDOPEN="forcedOpen",DATA_HASMOUSEMOVE="hasMouseMove",DATA_MOUSEONTOTIP="mouseOnToPopup",DATA_ORIGINALTITLE="originalTitle",DATA_POWERTIP="powertip",DATA_POWERTIPJQ="powertipjq",DATA_POWERTIPTARGET="powertiptarget",EVENT_NAMESPACE=".powertip",RAD2DEG=180/Math.PI,MOUSE_EVENTS=["click","dblclick","mousedown","mouseup","mousemove","mouseover","mouseout","mouseenter","mouseleave","contextmenu"];var 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+ * jQuery UI Touch Punch 0.2.3
+ *
+ * Copyright 2011–2014, Dave Furfero
+ * Dual licensed under the MIT or GPL Version 2 licenses.
+ *
+ * Depends:
+ *  jquery.ui.widget.js
+ *  jquery.ui.mouse.js
+ */
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+ * http://www.smartmenus.org/
+ * Copyright Vasil Dinkov, Vadikom Web Ltd. http://vadikom.com; Licensed MIT */(function(t){"function"==typeof define&&define.amd?define(["jquery"],t):"object"==typeof module&&"object"==typeof module.exports?module.exports=t(require("jquery")):t(jQuery)})(function($){function initMouseDetection(t){var e=".smartmenus_mouse";if(mouseDetectionEnabled||t)mouseDetectionEnabled&&t&&($(document).off(e),mouseDetectionEnabled=!1);else{var i=!0,s=null,o={mousemove:function(t){var e={x:t.pageX,y:t.pageY,timeStamp:(new Date).getTime()};if(s){var o=Math.abs(s.x-e.x),a=Math.abs(s.y-e.y);if((o>0||a>0)&&2>=o&&2>=a&&300>=e.timeStamp-s.timeStamp&&(mouse=!0,i)){var n=$(t.target).closest("a");n.is("a")&&$.each(menuTrees,function(){return $.contains(this.$root[0],n[0])?(this.itemEnter({currentTarget:n[0]}),!1):void 0}),i=!1}}s=e}};o[touchEvents?"touchstart":"pointerover pointermove pointerout MSPointerOver MSPointerMove 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$.SmartMenus=function(t,e){this.$root=$(t),this.opts=e,this.rootId="",this.accessIdPrefix="",this.$subArrow=null,this.activatedItems=[],this.visibleSubMenus=[],this.showTimeout=0,this.hideTimeout=0,this.scrollTimeout=0,this.clickActivated=!1,this.focusActivated=!1,this.zIndexInc=0,this.idInc=0,this.$firstLink=null,this.$firstSub=null,this.disabled=!1,this.$disableOverlay=null,this.$touchScrollingSub=null,this.cssTransforms3d="perspective"in t.style||"webkitPerspective"in t.style,this.wasCollapsible=!1,this.init()},$.extend($.SmartMenus,{hideAll:function(){$.each(menuTrees,function(){this.menuHideAll()})},destroy:function(){for(;menuTrees.length;)menuTrees[0].destroy();initMouseDetection(!0)},prototype:{init:function(t){var e=this;if(!t){menuTrees.push(this),this.rootId=((new Date).getTime()+Math.random()+"").replace(/\D/g,""),this.accessIdPrefix="sm-"+this.rootId+"-",this.$root.hasClass("sm-rtl")&&(this.opts.rightToLeftSubMenus=!0);var i=".smartmenus";this.$root.data("smartmenus",this).attr("data-smartmenus-id",this.rootId).dataSM("level",1).on(getEventsNS({"mouseover focusin":$.proxy(this.rootOver,this),"mouseout focusout":$.proxy(this.rootOut,this),keydown:$.proxy(this.rootKeyDown,this)},i)).on(getEventsNS({mouseenter:$.proxy(this.itemEnter,this),mouseleave:$.proxy(this.itemLeave,this),mousedown:$.proxy(this.itemDown,this),focus:$.proxy(this.itemFocus,this),blur:$.proxy(this.itemBlur,this),click:$.proxy(this.itemClick,this)},i),"a"),i+=this.rootId,this.opts.hideOnClick&&$(document).on(getEventsNS({touchstart:$.proxy(this.docTouchStart,this),touchmove:$.proxy(this.docTouchMove,this),touchend:$.proxy(this.docTouchEnd,this),click:$.proxy(this.docClick,this)},i)),$(window).on(getEventsNS({"resize orientationchange":$.proxy(this.winResize,this)},i)),this.opts.subIndicators&&(this.$subArrow=$("<span/>").addClass("sub-arrow"),this.opts.subIndicatorsText&&this.$subArrow.html(this.opts.subIndicatorsText)),initMouseDetection()}if(this.$firstSub=this.$root.find("ul").each(function(){e.menuInit($(this))}).eq(0),this.$firstLink=this.$root.find("a").eq(0),this.opts.markCurrentItem){var s=/(index|default)\.[^#\?\/]*/i,o=/#.*/,a=window.location.href.replace(s,""),n=a.replace(o,"");this.$root.find("a").each(function(){var t=this.href.replace(s,""),i=$(this);(t==a||t==n)&&(i.addClass("current"),e.opts.markCurrentTree&&i.parentsUntil("[data-smartmenus-id]","ul").each(function(){$(this).dataSM("parent-a").addClass("current")}))})}this.wasCollapsible=this.isCollapsible()},destroy:function(t){if(!t){var e=".smartmenus";this.$root.removeData("smartmenus").removeAttr("data-smartmenus-id").removeDataSM("level").off(e),e+=this.rootId,$(document).off(e),$(window).off(e),this.opts.subIndicators&&(this.$subArrow=null)}this.menuHideAll();var i=this;this.$root.find("ul").each(function(){var t=$(this);t.dataSM("scroll-arrows")&&t.dataSM("scroll-arrows").remove(),t.dataSM("shown-before")&&((i.opts.subMenusMinWidth||i.opts.subMenusMaxWidth)&&t.css({width:"",minWidth:"",maxWidth:""}).removeClass("sm-nowrap"),t.dataSM("scroll-arrows")&&t.dataSM("scroll-arrows").remove(),t.css({zIndex:"",top:"",left:"",marginLeft:"",marginTop:"",display:""})),0==(t.attr("id")||"").indexOf(i.accessIdPrefix)&&t.removeAttr("id")}).removeDataSM("in-mega").removeDataSM("shown-before").removeDataSM("scroll-arrows").removeDataSM("parent-a").removeDataSM("level").removeDataSM("beforefirstshowfired").removeAttr("role").removeAttr("aria-hidden").removeAttr("aria-labelledby").removeAttr("aria-expanded"),this.$root.find("a.has-submenu").each(function(){var t=$(this);0==t.attr("id").indexOf(i.accessIdPrefix)&&t.removeAttr("id")}).removeClass("has-submenu").removeDataSM("sub").removeAttr("aria-haspopup").removeAttr("aria-controls").removeAttr("aria-expanded").closest("li").removeDataSM("sub"),this.opts.subIndicators&&this.$root.find("span.sub-arrow").remove(),this.opts.markCurrentItem&&this.$root.find("a.current").removeClass("current"),t||(this.$root=null,this.$firstLink=null,this.$firstSub=null,this.$disableOverlay&&(this.$disableOverlay.remove(),this.$disableOverlay=null),menuTrees.splice($.inArray(this,menuTrees),1))},disable:function(t){if(!this.disabled){if(this.menuHideAll(),!t&&!this.opts.isPopup&&this.$root.is(":visible")){var e=this.$root.offset();this.$disableOverlay=$('<div class="sm-jquery-disable-overlay"/>').css({position:"absolute",top:e.top,left:e.left,width:this.$root.outerWidth(),height:this.$root.outerHeight(),zIndex:this.getStartZIndex(!0),opacity:0}).appendTo(document.body)}this.disabled=!0}},docClick:function(t){return this.$touchScrollingSub?(this.$touchScrollingSub=null,void 0):((this.visibleSubMenus.length&&!$.contains(this.$root[0],t.target)||$(t.target).closest("a").length)&&this.menuHideAll(),void 0)},docTouchEnd:function(){if(this.lastTouch){if(!(!this.visibleSubMenus.length||void 0!==this.lastTouch.x2&&this.lastTouch.x1!=this.lastTouch.x2||void 0!==this.lastTouch.y2&&this.lastTouch.y1!=this.lastTouch.y2||this.lastTouch.target&&$.contains(this.$root[0],this.lastTouch.target))){this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0);var t=this;this.hideTimeout=setTimeout(function(){t.menuHideAll()},350)}this.lastTouch=null}},docTouchMove:function(t){if(this.lastTouch){var e=t.originalEvent.touches[0];this.lastTouch.x2=e.pageX,this.lastTouch.y2=e.pageY}},docTouchStart:function(t){var e=t.originalEvent.touches[0];this.lastTouch={x1:e.pageX,y1:e.pageY,target:e.target}},enable:function(){this.disabled&&(this.$disableOverlay&&(this.$disableOverlay.remove(),this.$disableOverlay=null),this.disabled=!1)},getClosestMenu:function(t){for(var e=$(t).closest("ul");e.dataSM("in-mega");)e=e.parent().closest("ul");return e[0]||null},getHeight:function(t){return this.getOffset(t,!0)},getOffset:function(t,e){var i;"none"==t.css("display")&&(i={position:t[0].style.position,visibility:t[0].style.visibility},t.css({position:"absolute",visibility:"hidden"}).show());var s=t[0].getBoundingClientRect&&t[0].getBoundingClientRect(),o=s&&(e?s.height||s.bottom-s.top:s.width||s.right-s.left);return o||0===o||(o=e?t[0].offsetHeight:t[0].offsetWidth),i&&t.hide().css(i),o},getStartZIndex:function(t){var e=parseInt(this[t?"$root":"$firstSub"].css("z-index"));return!t&&isNaN(e)&&(e=parseInt(this.$root.css("z-index"))),isNaN(e)?1:e},getTouchPoint:function(t){return t.touches&&t.touches[0]||t.changedTouches&&t.changedTouches[0]||t},getViewport:function(t){var e=t?"Height":"Width",i=document.documentElement["client"+e],s=window["inner"+e];return s&&(i=Math.min(i,s)),i},getViewportHeight:function(){return this.getViewport(!0)},getViewportWidth:function(){return this.getViewport()},getWidth:function(t){return this.getOffset(t)},handleEvents:function(){return!this.disabled&&this.isCSSOn()},handleItemEvents:function(t){return this.handleEvents()&&!this.isLinkInMegaMenu(t)},isCollapsible:function(){return"static"==this.$firstSub.css("position")},isCSSOn:function(){return"inline"!=this.$firstLink.css("display")},isFixed:function(){var t="fixed"==this.$root.css("position");return t||this.$root.parentsUntil("body").each(function(){return"fixed"==$(this).css("position")?(t=!0,!1):void 0}),t},isLinkInMegaMenu:function(t){return $(this.getClosestMenu(t[0])).hasClass("mega-menu")},isTouchMode:function(){return!mouse||this.opts.noMouseOver||this.isCollapsible()},itemActivate:function(t,e){var i=t.closest("ul"),s=i.dataSM("level");if(s>1&&(!this.activatedItems[s-2]||this.activatedItems[s-2][0]!=i.dataSM("parent-a")[0])){var o=this;$(i.parentsUntil("[data-smartmenus-id]","ul").get().reverse()).add(i).each(function(){o.itemActivate($(this).dataSM("parent-a"))})}if((!this.isCollapsible()||e)&&this.menuHideSubMenus(this.activatedItems[s-1]&&this.activatedItems[s-1][0]==t[0]?s:s-1),this.activatedItems[s-1]=t,this.$root.triggerHandler("activate.smapi",t[0])!==!1){var a=t.dataSM("sub");a&&(this.isTouchMode()||!this.opts.showOnClick||this.clickActivated)&&this.menuShow(a)}},itemBlur:function(t){var e=$(t.currentTarget);this.handleItemEvents(e)&&this.$root.triggerHandler("blur.smapi",e[0])},itemClick:function(t){var e=$(t.currentTarget);if(this.handleItemEvents(e)){if(this.$touchScrollingSub&&this.$touchScrollingSub[0]==e.closest("ul")[0])return this.$touchScrollingSub=null,t.stopPropagation(),!1;if(this.$root.triggerHandler("click.smapi",e[0])===!1)return!1;var i=$(t.target).is(".sub-arrow"),s=e.dataSM("sub"),o=s?2==s.dataSM("level"):!1,a=this.isCollapsible(),n=/toggle$/.test(this.opts.collapsibleBehavior),r=/link$/.test(this.opts.collapsibleBehavior),h=/^accordion/.test(this.opts.collapsibleBehavior);if(s&&!s.is(":visible")){if((!r||!a||i)&&(this.opts.showOnClick&&o&&(this.clickActivated=!0),this.itemActivate(e,h),s.is(":visible")))return this.focusActivated=!0,!1}else if(a&&(n||i))return this.itemActivate(e,h),this.menuHide(s),n&&(this.focusActivated=!1),!1;return this.opts.showOnClick&&o||e.hasClass("disabled")||this.$root.triggerHandler("select.smapi",e[0])===!1?!1:void 0}},itemDown:function(t){var e=$(t.currentTarget);this.handleItemEvents(e)&&e.dataSM("mousedown",!0)},itemEnter:function(t){var e=$(t.currentTarget);if(this.handleItemEvents(e)){if(!this.isTouchMode()){this.showTimeout&&(clearTimeout(this.showTimeout),this.showTimeout=0);var i=this;this.showTimeout=setTimeout(function(){i.itemActivate(e)},this.opts.showOnClick&&1==e.closest("ul").dataSM("level")?1:this.opts.showTimeout)}this.$root.triggerHandler("mouseenter.smapi",e[0])}},itemFocus:function(t){var e=$(t.currentTarget);this.handleItemEvents(e)&&(!this.focusActivated||this.isTouchMode()&&e.dataSM("mousedown")||this.activatedItems.length&&this.activatedItems[this.activatedItems.length-1][0]==e[0]||this.itemActivate(e,!0),this.$root.triggerHandler("focus.smapi",e[0]))},itemLeave:function(t){var e=$(t.currentTarget);this.handleItemEvents(e)&&(this.isTouchMode()||(e[0].blur(),this.showTimeout&&(clearTimeout(this.showTimeout),this.showTimeout=0)),e.removeDataSM("mousedown"),this.$root.triggerHandler("mouseleave.smapi",e[0]))},menuHide:function(t){if(this.$root.triggerHandler("beforehide.smapi",t[0])!==!1&&(canAnimate&&t.stop(!0,!0),"none"!=t.css("display"))){var e=function(){t.css("z-index","")};this.isCollapsible()?canAnimate&&this.opts.collapsibleHideFunction?this.opts.collapsibleHideFunction.call(this,t,e):t.hide(this.opts.collapsibleHideDuration,e):canAnimate&&this.opts.hideFunction?this.opts.hideFunction.call(this,t,e):t.hide(this.opts.hideDuration,e),t.dataSM("scroll")&&(this.menuScrollStop(t),t.css({"touch-action":"","-ms-touch-action":"","-webkit-transform":"",transform:""}).off(".smartmenus_scroll").removeDataSM("scroll").dataSM("scroll-arrows").hide()),t.dataSM("parent-a").removeClass("highlighted").attr("aria-expanded","false"),t.attr({"aria-expanded":"false","aria-hidden":"true"});var i=t.dataSM("level");this.activatedItems.splice(i-1,1),this.visibleSubMenus.splice($.inArray(t,this.visibleSubMenus),1),this.$root.triggerHandler("hide.smapi",t[0])}},menuHideAll:function(){this.showTimeout&&(clearTimeout(this.showTimeout),this.showTimeout=0);for(var t=this.opts.isPopup?1:0,e=this.visibleSubMenus.length-1;e>=t;e--)this.menuHide(this.visibleSubMenus[e]);this.opts.isPopup&&(canAnimate&&this.$root.stop(!0,!0),this.$root.is(":visible")&&(canAnimate&&this.opts.hideFunction?this.opts.hideFunction.call(this,this.$root):this.$root.hide(this.opts.hideDuration))),this.activatedItems=[],this.visibleSubMenus=[],this.clickActivated=!1,this.focusActivated=!1,this.zIndexInc=0,this.$root.triggerHandler("hideAll.smapi")},menuHideSubMenus:function(t){for(var e=this.activatedItems.length-1;e>=t;e--){var i=this.activatedItems[e].dataSM("sub");i&&this.menuHide(i)}},menuInit:function(t){if(!t.dataSM("in-mega")){t.hasClass("mega-menu")&&t.find("ul").dataSM("in-mega",!0);for(var e=2,i=t[0];(i=i.parentNode.parentNode)!=this.$root[0];)e++;var s=t.prevAll("a").eq(-1);s.length||(s=t.prevAll().find("a").eq(-1)),s.addClass("has-submenu").dataSM("sub",t),t.dataSM("parent-a",s).dataSM("level",e).parent().dataSM("sub",t);var o=s.attr("id")||this.accessIdPrefix+ 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e,i,s=t.dataSM("parent-a"),o=s.closest("li"),a=o.parent(),n=t.dataSM("level"),r=this.getWidth(t),h=this.getHeight(t),u=s.offset(),l=u.left,c=u.top,d=this.getWidth(s),m=this.getHeight(s),p=$(window),f=p.scrollLeft(),v=p.scrollTop(),b=this.getViewportWidth(),S=this.getViewportHeight(),g=a.parent().is("[data-sm-horizontal-sub]")||2==n&&!a.hasClass("sm-vertical"),M=this.opts.rightToLeftSubMenus&&!o.is("[data-sm-reverse]")||!this.opts.rightToLeftSubMenus&&o.is("[data-sm-reverse]"),w=2==n?this.opts.mainMenuSubOffsetX:this.opts.subMenusSubOffsetX,T=2==n?this.opts.mainMenuSubOffsetY:this.opts.subMenusSubOffsetY;if(g?(e=M?d-r-w:w,i=this.opts.bottomToTopSubMenus?-h-T:m+T):(e=M?w-r:d-w,i=this.opts.bottomToTopSubMenus?m-T-h:T),this.opts.keepInViewport){var y=l+e,I=c+i;if(M&&f>y?e=g?f-y+e:d-w:!M&&y+r>f+b&&(e=g?f+b-r-y+e:w-r),g||(S>h&&I+h>v+S?i+=v+S-h-I:(h>=S||v>I)&&(i+=v-I)),g&&(I+h>v+S+.49||v>I)||!g&&h>S+.49){var x=this;t.dataSM("scroll-arrows")||t.dataSM("scroll-arrows",$([$('<span 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r=t.dataSM("level");if(this.activatedItems[r-1]&&this.activatedItems[r-1].dataSM("sub")&&this.activatedItems[r-1].dataSM("sub").is(":visible")&&this.menuHideSubMenus(r-1),o.y=o.up&&o.y>=n||!o.up&&n>=o.y?o.y:Math.abs(n-o.y)>s?o.y+(o.up?s:-s):n,t.css(this.cssTransforms3d?{"-webkit-transform":"translate3d(0, "+o.y+"px, 0)",transform:"translate3d(0, "+o.y+"px, 0)"}:{marginTop:o.y}),mouse&&(o.up&&o.y>o.downEnd||!o.up&&o.y<o.upEnd)&&a.eq(o.up?1:0).show(),o.y==n)mouse&&a.eq(o.up?0:1).hide(),this.menuScrollStop(t);else if(!e){this.opts.scrollAccelerate&&o.step<this.opts.scrollStep&&(o.step+=.2);var h=this;this.scrollTimeout=requestAnimationFrame(function(){h.menuScroll(t)})}},menuScrollMousewheel:function(t,e){if(this.getClosestMenu(e.target)==t[0]){e=e.originalEvent;var i=(e.wheelDelta||-e.detail)>0;t.dataSM("scroll-arrows").eq(i?0:1).is(":visible")&&(t.dataSM("scroll").up=i,this.menuScroll(t,!0))}e.preventDefault()},menuScrollOut:function(t,e){mouse&&(/^scroll-(up|down)/.test((e.relatedTarget||"").className)||(t[0]==e.relatedTarget||$.contains(t[0],e.relatedTarget))&&this.getClosestMenu(e.relatedTarget)==t[0]||t.dataSM("scroll-arrows").css("visibility","hidden"))},menuScrollOver:function(t,e){if(mouse&&!/^scroll-(up|down)/.test(e.target.className)&&this.getClosestMenu(e.target)==t[0]){this.menuScrollRefreshData(t);var i=t.dataSM("scroll"),s=$(window).scrollTop()-t.dataSM("parent-a").offset().top-i.itemH;t.dataSM("scroll-arrows").eq(0).css("margin-top",s).end().eq(1).css("margin-top",s+this.getViewportHeight()-i.arrowDownH).end().css("visibility","visible")}},menuScrollRefreshData:function(t){var e=t.dataSM("scroll"),i=$(window).scrollTop()-t.dataSM("parent-a").offset().top-e.itemH;this.cssTransforms3d&&(i=-(parseFloat(t.css("margin-top"))-i)),$.extend(e,{upEnd:i,downEnd:i+this.getViewportHeight()-e.subH})},menuScrollStop:function(t){return this.scrollTimeout?(cancelAnimationFrame(this.scrollTimeout),this.scrollTimeout=0,t.dataSM("scroll").step=1,!0):void 0},menuScrollTouch:function(t,e){if(e=e.originalEvent,isTouchEvent(e)){var i=this.getTouchPoint(e);if(this.getClosestMenu(i.target)==t[0]){var s=t.dataSM("scroll");if(/(start|down)$/i.test(e.type))this.menuScrollStop(t)?(e.preventDefault(),this.$touchScrollingSub=t):this.$touchScrollingSub=null,this.menuScrollRefreshData(t),$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp});else if(/move$/i.test(e.type)){var o=void 0!==s.touchY?s.touchY:s.touchStartY;if(void 0!==o&&o!=i.pageY){this.$touchScrollingSub=t;var a=i.pageY>o;void 0!==s.up&&s.up!=a&&$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp}),$.extend(s,{up:a,touchY:i.pageY}),this.menuScroll(t,!0,Math.abs(i.pageY-o))}e.preventDefault()}else void 0!==s.touchY&&((s.momentum=15*Math.pow(Math.abs(i.pageY-s.touchStartY)/(e.timeStamp-s.touchStartTime),2))&&(this.menuScrollStop(t),this.menuScroll(t),e.preventDefault()),delete s.touchY)}}},menuShow:function(t){if((t.dataSM("beforefirstshowfired")||(t.dataSM("beforefirstshowfired",!0),this.$root.triggerHandler("beforefirstshow.smapi",t[0])!==!1))&&this.$root.triggerHandler("beforeshow.smapi",t[0])!==!1&&(t.dataSM("shown-before",!0),canAnimate&&t.stop(!0,!0),!t.is(":visible"))){var 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+<title>EXONA: Evolutionary eXploration of Neural Architectures: image_tools/large_image_set.hxx Source File</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
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+<table cellspacing="0" cellpadding="0">
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+  <ul>
+<li class="navelem"><a class="el" href="dir_5886800866fd6099dc756e063000bcd7.html">image_tools</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">large_image_set.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef LARGE_IMAGE_SET_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define LARGE_IMAGE_SET_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">std::ifstream</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160; </div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160; </div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &quot;image_set_interface.hxx&quot;</span></div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160; </div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="keyword">typedef</span> <span class="keyword">class </span><a class="code" href="class_large_images.html">LargeImages</a> <a class="code" href="class_large_images.html">LargeImages</a>;</div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160; </div>
+<div class="line"><a name="l00020"></a><span class="lineno"><a class="line" href="class_large_image.html">   20</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_large_image.html">LargeImage</a> : <span class="keyword">public</span> <a class="code" href="class_image_interface.html">ImageInterface</a> {</div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;    <span class="keyword">private</span>:</div>
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+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;        <span class="keywordtype">int</span> number_subimages;</div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;        <span class="keywordtype">int</span> padding;</div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;        <span class="keywordtype">int</span> channels;</div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;        <span class="keywordtype">int</span> height;</div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;        <span class="keywordtype">int</span> width;</div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;        <span class="keywordtype">int</span> classification;</div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt; vector&lt; vector&lt;uint8_t&gt;</a> &gt; &gt; pixels;</div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt; vector&lt;uint8_t&gt;</a> &gt; alpha;</div>
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+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;        <span class="comment">//reference to images to get channel avgs and std_Devs</span></div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;        <span class="keyword">const</span> <a class="code" href="class_large_images.html">LargeImages</a> *images;</div>
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+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160; </div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;        <a class="code" href="class_large_image.html">LargeImage</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">ifstream</a> &amp;infile, <span class="keywordtype">int</span> _number_subimages, <span class="keywordtype">int</span> _channels, <span class="keywordtype">int</span> _width, <span class="keywordtype">int</span> _height, <span class="keywordtype">int</span> _padding, <span class="keywordtype">int</span> _classification, <span class="keyword">const</span> <a class="code" href="class_large_images.html">LargeImages</a> *_images);</div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;        <a class="code" href="class_large_image.html">LargeImage</a>(<span class="keywordtype">int</span> _number_subimages, <span class="keywordtype">int</span> _channels, <span class="keywordtype">int</span> _width, <span class="keywordtype">int</span> _height, <span class="keywordtype">int</span> _padding, <span class="keywordtype">int</span> _classification, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;uint8_t&gt;</a> &gt; &gt; &amp;_pixels);</div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;        <a class="code" href="class_large_image.html">LargeImage</a>(<span class="keywordtype">int</span> _number_subimages, <span class="keywordtype">int</span> _channels, <span class="keywordtype">int</span> _width, <span class="keywordtype">int</span> _height, <span class="keywordtype">int</span> _padding, <span class="keywordtype">int</span> _classification, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;uint8_t&gt;</a> &gt; &gt; &amp;_pixels, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;uint8_t&gt;</a> &gt; &amp;_alpha);</div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160; </div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;        <span class="keywordtype">int</span> get_classification() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160; </div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;        <span class="keywordtype">int</span> get_number_subimages() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;        <span class="keywordtype">int</span> get_channels() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;        <span class="keywordtype">int</span> get_height() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;        <span class="keywordtype">int</span> get_width() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160; </div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;        <span class="keywordtype">void</span> scale_0_1();</div>
+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;        <span class="keywordtype">void</span> get_pixel_avg(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> &amp;channel_avgs) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;        <span class="keywordtype">void</span> get_pixel_variance(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> &amp;channel_avgs, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> &amp;channel_variances) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;        <span class="keywordtype">void</span> normalize(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> &amp;channel_avgs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> &amp;channel_std_dev);</div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160; </div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;        <span class="keywordtype">void</span> print(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out);</div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160; </div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;        uint8_t get_pixel_unnormalized(<span class="keywordtype">int</span> z, <span class="keywordtype">int</span> y, <span class="keywordtype">int</span> x) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;        uint8_t get_alpha_unnormalized(<span class="keywordtype">int</span> y, <span class="keywordtype">int</span> x) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;        <span class="keywordtype">void</span> set_pixel(<span class="keywordtype">int</span> z, <span class="keywordtype">int</span> y, <span class="keywordtype">int</span> x, uint8_t value);</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;        uint8_t get_pixel(<span class="keywordtype">int</span> z, <span class="keywordtype">int</span> y, <span class="keywordtype">int</span> x) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160; </div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;        <span class="keywordtype">void</span> set_alpha(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;uint8_t&gt;</a> &gt; &amp;_alpha);</div>
+<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;        <span class="keywordtype">void</span> set_alpha(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> &gt; &amp;_alpha);</div>
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+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        <span class="keywordtype">void</span> draw_png_alpha(<span class="keywordtype">string</span> filename) <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;<span class="preprocessor">#ifdef _HAS_TIFF_</span></div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        <span class="keywordtype">void</span> draw_tiff(<span class="keywordtype">string</span> filename) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;        <span class="keywordtype">void</span> draw_tiff_4channel(<span class="keywordtype">string</span> filename) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;        <span class="keywordtype">void</span> draw_tiff_alpha(<span class="keywordtype">string</span> filename) <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="class_large_images.html">   77</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_large_images.html">LargeImages</a> : <span class="keyword">public</span> <a class="code" href="class_multi_images_interface.html">MultiImagesInterface</a> {</div>
+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;    <span class="keyword">private</span>:</div>
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+<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160; </div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> class_sizes;</div>
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+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;        <span class="keywordtype">int</span> channels;</div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;        <span class="keywordtype">int</span> subimage_width, subimage_height;</div>
+<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160; </div>
+<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;LargeImage&gt;</a> images;</div>
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+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> channel_avg;</div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> channel_std_dev;</div>
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+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <a class="code" href="class_large_images.html">LargeImages</a>(<span class="keywordtype">string</span> binary_filename, <span class="keywordtype">int</span> _padding, <span class="keywordtype">int</span> _subimage_height, <span class="keywordtype">int</span> _subimage_width);</div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        <a class="code" href="class_large_images.html">LargeImages</a>(<span class="keywordtype">string</span> binary_filename, <span class="keywordtype">int</span> _padding, <span class="keywordtype">int</span> _subimage_height, <span class="keywordtype">int</span> _subimage_width, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> &amp;_channel_avg, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> &amp;channel_std_dev);</div>
+<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160; </div>
+<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;        <span class="keywordtype">string</span> get_filename() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160; </div>
+<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;        <span class="keywordtype">int</span> get_class_size(<span class="keywordtype">int</span> i) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160; </div>
+<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;        <span class="keywordtype">int</span> get_number_classes() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160; </div>
+<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;        <span class="keywordtype">int</span> get_number_images() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;        <span class="keywordtype">int</span> get_number_large_images() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;        <span class="keywordtype">int</span> get_number_subimages(<span class="keywordtype">int</span> i) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160; </div>
+<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;        <span class="keywordtype">int</span> get_padding() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160; </div>
+<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;        <span class="keywordtype">int</span> get_image_channels() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;        <span class="keywordtype">int</span> get_image_width() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;        <span class="keywordtype">int</span> get_image_height() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160; </div>
+<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;        <span class="keywordtype">int</span> get_large_image_channels(<span class="keywordtype">int</span> image) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;        <span class="keywordtype">int</span> get_large_image_width(<span class="keywordtype">int</span> image) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;        <span class="keywordtype">int</span> get_large_image_height(<span class="keywordtype">int</span> image) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160; </div>
+<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160; </div>
+<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;        <span class="keywordtype">int</span> get_image_classification(<span class="keywordtype">int</span> image) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;        <span class="keywordtype">int</span> get_classification(<span class="keywordtype">int</span> subimage) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;        <span class="keywordtype">float</span> get_pixel(<span class="keywordtype">int</span> subimage, <span class="keywordtype">int</span> z, <span class="keywordtype">int</span> y, <span class="keywordtype">int</span> x) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;        <span class="keywordtype">float</span> get_raw_pixel(<span class="keywordtype">int</span> subimage, <span class="keywordtype">int</span> z, <span class="keywordtype">int</span> y, <span class="keywordtype">int</span> x) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160; </div>
+<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;        <span class="keywordtype">void</span> calculate_avg_std_dev();</div>
+<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160; </div>
+<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;        <span class="keywordtype">float</span> get_channel_avg(<span class="keywordtype">int</span> channel) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160; </div>
+<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;        <span class="keywordtype">float</span> get_channel_std_dev(<span class="keywordtype">int</span> channel) <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160; </div>
+<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;        <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a>&amp; get_average() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;        <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a>&amp; get_std_dev() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160; </div>
+<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;        <span class="keywordtype">void</span> normalize();</div>
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+<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;        <a class="code" href="class_large_image.html">LargeImage</a>* copy_image(<span class="keywordtype">int</span> i) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160; </div>
+<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;<span class="preprocessor">#ifdef _HAS_TIFF_</span></div>
+<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;        <span class="keywordtype">int</span> read_images_from_directory(<span class="keywordtype">string</span> directory);</div>
+<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;        <span class="keywordtype">int</span> read_images_from_directories(<span class="keywordtype">string</span> directory);</div>
+<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;};</div>
+<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160; </div>
+<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160; </div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_multi_images_interface_html"><div class="ttname"><a href="class_multi_images_interface.html">MultiImagesInterface</a></div><div class="ttdef"><b>Definition:</b> image_set_interface.hxx:52</div></div>
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+<div class="ttc" id="aclass_large_image_html"><div class="ttname"><a href="class_large_image.html">LargeImage</a></div><div class="ttdef"><b>Definition:</b> large_image_set.hxx:20</div></div>
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+<div class="ttc" id="abasic_ifstream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">std::ifstream</a></div></div>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <ul>
+<li class="navelem"><a class="el" href="dir_5886800866fd6099dc756e063000bcd7.html">image_tools</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">lodepng.h</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">LodePNG version 20131222</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">Copyright (c) 2005-2013 Lode Vandevenne</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">This software is provided &#39;as-is&#39;, without any express or implied</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">warranty. In no event will the authors be held liable for any damages</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">arising from the use of this software.</span></div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">Permission is granted to anyone to use this software for any purpose,</span></div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">including commercial applications, and to alter it and redistribute it</span></div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">freely, subject to the following restrictions:</span></div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">    1. The origin of this software must not be misrepresented; you must not</span></div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">    claim that you wrote the original software. If you use this software</span></div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">    in a product, an acknowledgment in the product documentation would be</span></div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">    appreciated but is not required.</span></div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">    2. Altered source versions must be plainly marked as such, and must not be</span></div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="comment">    misrepresented as being the original software.</span></div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">    3. This notice may not be removed or altered from any source</span></div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="comment">    distribution.</span></div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160; </div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="preprocessor">#ifndef LODEPNG_H</span></div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="preprocessor">#define LODEPNG_H</span></div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160; </div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="preprocessor">#include &lt;string.h&gt;</span> <span class="comment">/*for size_t*/</span></div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160; </div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="preprocessor">#ifdef __cplusplus</span></div>
+<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*__cplusplus*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160; </div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="comment">The following #defines are used to create code sections. They can be disabled</span></div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="comment">to disable code sections, which can give faster compile time and smaller binary.</span></div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="comment">The &quot;NO_COMPILE&quot; defines are designed to be used to pass as defines to the</span></div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="comment">compiler command to disable them without modifying this header, e.g.</span></div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="comment">-DLODEPNG_NO_COMPILE_ZLIB for gcc.</span></div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="comment">/*deflate &amp; zlib. If disabled, you must specify alternative zlib functions in</span></div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="comment">the custom_zlib field of the compress and decompress settings*/</span></div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;<span class="preprocessor">#ifndef LODEPNG_NO_COMPILE_ZLIB</span></div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="preprocessor">#define LODEPNG_COMPILE_ZLIB</span></div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;<span class="comment">/*png encoder and png decoder*/</span></div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;<span class="preprocessor">#ifndef LODEPNG_NO_COMPILE_PNG</span></div>
+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;<span class="preprocessor">#define LODEPNG_COMPILE_PNG</span></div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;<span class="comment">/*deflate&amp;zlib decoder and png decoder*/</span></div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;<span class="preprocessor">#ifndef LODEPNG_NO_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;<span class="preprocessor">#define LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;<span class="comment">/*deflate&amp;zlib encoder and png encoder*/</span></div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;<span class="preprocessor">#ifndef LODEPNG_NO_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;<span class="preprocessor">#define LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;<span class="comment">/*the optional built in harddisk file loading and saving functions*/</span></div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;<span class="preprocessor">#ifndef LODEPNG_NO_COMPILE_DISK</span></div>
+<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;<span class="preprocessor">#define LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;<span class="comment">/*support for chunks other than IHDR, IDAT, PLTE, tRNS, IEND: ancillary and unknown chunks*/</span></div>
+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;<span class="preprocessor">#ifndef LODEPNG_NO_COMPILE_ANCILLARY_CHUNKS</span></div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;<span class="preprocessor">#define LODEPNG_COMPILE_ANCILLARY_CHUNKS</span></div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;<span class="comment">/*ability to convert error numerical codes to English text string*/</span></div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;<span class="preprocessor">#ifndef LODEPNG_NO_COMPILE_ERROR_TEXT</span></div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;<span class="preprocessor">#define LODEPNG_COMPILE_ERROR_TEXT</span></div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;<span class="comment">/*Compile the default allocators (C&#39;s free, malloc and realloc). If you disable this,</span></div>
+<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;<span class="comment">you can define the functions lodepng_free, lodepng_malloc and lodepng_realloc in your</span></div>
+<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;<span class="comment">source files with custom allocators.*/</span></div>
+<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;<span class="preprocessor">#ifndef LODEPNG_NO_COMPILE_ALLOCATORS</span></div>
+<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;<span class="preprocessor">#define LODEPNG_COMPILE_ALLOCATORS</span></div>
+<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;<span class="comment">/*compile the C++ version (you can disable the C++ wrapper here even when compiling for C++)*/</span></div>
+<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;<span class="preprocessor">#ifdef __cplusplus</span></div>
+<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;<span class="preprocessor">#ifndef LODEPNG_NO_COMPILE_CPP</span></div>
+<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;<span class="preprocessor">#define LODEPNG_COMPILE_CPP</span></div>
+<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160; </div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_PNG</span></div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;<span class="comment">/*The PNG color types (also used for raw).*/</span></div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;<span class="keyword">typedef</span> <span class="keyword">enum</span> LodePNGColorType</div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;{</div>
+<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;  LCT_GREY = 0, <span class="comment">/*greyscale: 1,2,4,8,16 bit*/</span></div>
+<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;  LCT_RGB = 2, <span class="comment">/*RGB: 8,16 bit*/</span></div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;  LCT_PALETTE = 3, <span class="comment">/*palette: 1,2,4,8 bit*/</span></div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;  LCT_GREY_ALPHA = 4, <span class="comment">/*greyscale with alpha: 8,16 bit*/</span></div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;  LCT_RGBA = 6 <span class="comment">/*RGB with alpha: 8,16 bit*/</span></div>
+<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;} LodePNGColorType;</div>
+<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160; </div>
+<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;<span class="comment">Converts PNG data in memory to raw pixel data.</span></div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;<span class="comment">out: Output parameter. Pointer to buffer that will contain the raw pixel data.</span></div>
+<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;<span class="comment">     After decoding, its size is w * h * (bytes per pixel) bytes larger than</span></div>
+<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;<span class="comment">     initially. Bytes per pixel depends on colortype and bitdepth.</span></div>
+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;<span class="comment">     Must be freed after usage with free(*out).</span></div>
+<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;<span class="comment">     Note: for 16-bit per channel colors, uses big endian format like PNG does.</span></div>
+<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;<span class="comment">w: Output parameter. Pointer to width of pixel data.</span></div>
+<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;<span class="comment">h: Output parameter. Pointer to height of pixel data.</span></div>
+<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;<span class="comment">in: Memory buffer with the PNG file.</span></div>
+<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;<span class="comment">insize: size of the in buffer.</span></div>
+<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;<span class="comment">colortype: the desired color type for the raw output image. See explanation on PNG color types.</span></div>
+<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;<span class="comment">bitdepth: the desired bit depth for the raw output image. See explanation on PNG color types.</span></div>
+<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;<span class="comment">Return value: LodePNG error code (0 means no error).</span></div>
+<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;<span class="keywordtype">unsigned</span> lodepng_decode_memory(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">unsigned</span>* w, <span class="keywordtype">unsigned</span>* h,</div>
+<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;                               <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize,</div>
+<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;                               LodePNGColorType colortype, <span class="keywordtype">unsigned</span> bitdepth);</div>
+<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160; </div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;<span class="comment">/*Same as lodepng_decode_memory, but always decodes to 32-bit RGBA raw image*/</span></div>
+<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;<span class="keywordtype">unsigned</span> lodepng_decode32(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">unsigned</span>* w, <span class="keywordtype">unsigned</span>* h,</div>
+<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;                          <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize);</div>
+<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160; </div>
+<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;<span class="comment">/*Same as lodepng_decode_memory, but always decodes to 24-bit RGB raw image*/</span></div>
+<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;<span class="keywordtype">unsigned</span> lodepng_decode24(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">unsigned</span>* w, <span class="keywordtype">unsigned</span>* h,</div>
+<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;                          <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize);</div>
+<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160; </div>
+<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;<span class="comment">Load PNG from disk, from file with given name.</span></div>
+<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;<span class="comment">Same as the other decode functions, but instead takes a filename as input.</span></div>
+<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;<span class="keywordtype">unsigned</span> lodepng_decode_file(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">unsigned</span>* w, <span class="keywordtype">unsigned</span>* h,</div>
+<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;                             <span class="keyword">const</span> <span class="keywordtype">char</span>* filename,</div>
+<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;                             LodePNGColorType colortype, <span class="keywordtype">unsigned</span> bitdepth);</div>
+<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160; </div>
+<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;<span class="comment">/*Same as lodepng_decode_file, but always decodes to 32-bit RGBA raw image.*/</span></div>
+<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;<span class="keywordtype">unsigned</span> lodepng_decode32_file(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">unsigned</span>* w, <span class="keywordtype">unsigned</span>* h,</div>
+<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;                               <span class="keyword">const</span> <span class="keywordtype">char</span>* filename);</div>
+<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160; </div>
+<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;<span class="comment">/*Same as lodepng_decode_file, but always decodes to 24-bit RGB raw image.*/</span></div>
+<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;<span class="keywordtype">unsigned</span> lodepng_decode24_file(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">unsigned</span>* w, <span class="keywordtype">unsigned</span>* h,</div>
+<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;                               <span class="keyword">const</span> <span class="keywordtype">char</span>* filename);</div>
+<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DISK*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DECODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160; </div>
+<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160; </div>
+<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;<span class="comment">Converts raw pixel data into a PNG image in memory. The colortype and bitdepth</span></div>
+<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;<span class="comment">  of the output PNG image cannot be chosen, they are automatically determined</span></div>
+<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;<span class="comment">  by the colortype, bitdepth and content of the input pixel data.</span></div>
+<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;<span class="comment">  Note: for 16-bit per channel colors, needs big endian format like PNG does.</span></div>
+<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;<span class="comment">out: Output parameter. Pointer to buffer that will contain the PNG image data.</span></div>
+<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;<span class="comment">     Must be freed after usage with free(*out).</span></div>
+<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;<span class="comment">outsize: Output parameter. Pointer to the size in bytes of the out buffer.</span></div>
+<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;<span class="comment">image: The raw pixel data to encode. The size of this buffer should be</span></div>
+<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;<span class="comment">       w * h * (bytes per pixel), bytes per pixel depends on colortype and bitdepth.</span></div>
+<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;<span class="comment">w: width of the raw pixel data in pixels.</span></div>
+<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;<span class="comment">h: height of the raw pixel data in pixels.</span></div>
+<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;<span class="comment">colortype: the color type of the raw input image. See explanation on PNG color types.</span></div>
+<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;<span class="comment">bitdepth: the bit depth of the raw input image. See explanation on PNG color types.</span></div>
+<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;<span class="comment">Return value: LodePNG error code (0 means no error).</span></div>
+<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;<span class="keywordtype">unsigned</span> lodepng_encode_memory(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outsize,</div>
+<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;                               <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* image, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;                               LodePNGColorType colortype, <span class="keywordtype">unsigned</span> bitdepth);</div>
+<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160; </div>
+<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;<span class="comment">/*Same as lodepng_encode_memory, but always encodes from 32-bit RGBA raw image.*/</span></div>
+<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;<span class="keywordtype">unsigned</span> lodepng_encode32(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outsize,</div>
+<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;                          <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* image, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h);</div>
+<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160; </div>
+<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;<span class="comment">/*Same as lodepng_encode_memory, but always encodes from 24-bit RGB raw image.*/</span></div>
+<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;<span class="keywordtype">unsigned</span> lodepng_encode24(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outsize,</div>
+<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;                          <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* image, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h);</div>
+<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160; </div>
+<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;<span class="comment">Converts raw pixel data into a PNG file on disk.</span></div>
+<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;<span class="comment">Same as the other encode functions, but instead takes a filename as output.</span></div>
+<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;<span class="comment">NOTE: This overwrites existing files without warning!</span></div>
+<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;<span class="keywordtype">unsigned</span> lodepng_encode_file(<span class="keyword">const</span> <span class="keywordtype">char</span>* filename,</div>
+<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;                             <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* image, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;                             LodePNGColorType colortype, <span class="keywordtype">unsigned</span> bitdepth);</div>
+<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160; </div>
+<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;<span class="comment">/*Same as lodepng_encode_file, but always encodes from 32-bit RGBA raw image.*/</span></div>
+<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;<span class="keywordtype">unsigned</span> lodepng_encode32_file(<span class="keyword">const</span> <span class="keywordtype">char</span>* filename,</div>
+<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;                               <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* image, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h);</div>
+<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160; </div>
+<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;<span class="comment">/*Same as lodepng_encode_file, but always encodes from 24-bit RGB raw image.*/</span></div>
+<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;<span class="keywordtype">unsigned</span> lodepng_encode24_file(<span class="keyword">const</span> <span class="keywordtype">char</span>* filename,</div>
+<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;                               <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* image, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h);</div>
+<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DISK*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ENCODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160; </div>
+<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160; </div>
+<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_CPP</span></div>
+<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;<span class="keyword">namespace </span>lodepng</div>
+<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;{</div>
+<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;<span class="comment">/*Same as lodepng_decode_memory, but decodes to an std::vector.*/</span></div>
+<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;<span class="keywordtype">unsigned</span> decode(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out, <span class="keywordtype">unsigned</span>&amp; w, <span class="keywordtype">unsigned</span>&amp; h,</div>
+<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;                <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize,</div>
+<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;                LodePNGColorType colortype = LCT_RGBA, <span class="keywordtype">unsigned</span> bitdepth = 8);</div>
+<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;<span class="keywordtype">unsigned</span> decode(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out, <span class="keywordtype">unsigned</span>&amp; w, <span class="keywordtype">unsigned</span>&amp; h,</div>
+<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;                <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; in,</div>
+<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;                LodePNGColorType colortype = LCT_RGBA, <span class="keywordtype">unsigned</span> bitdepth = 8);</div>
+<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;<span class="comment">Converts PNG file from disk to raw pixel data in memory.</span></div>
+<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;<span class="comment">Same as the other decode functions, but instead takes a filename as input.</span></div>
+<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;<span class="keywordtype">unsigned</span> decode(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out, <span class="keywordtype">unsigned</span>&amp; w, <span class="keywordtype">unsigned</span>&amp; h,</div>
+<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;                <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>&amp; filename,</div>
+<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;                LodePNGColorType colortype = LCT_RGBA, <span class="keywordtype">unsigned</span> bitdepth = 8);</div>
+<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;<span class="preprocessor">#endif //LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;<span class="preprocessor">#endif //LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160; </div>
+<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;<span class="comment">/*Same as lodepng_encode_memory, but encodes to an std::vector.*/</span></div>
+<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;<span class="keywordtype">unsigned</span> encode(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out,</div>
+<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;                <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;                LodePNGColorType colortype = LCT_RGBA, <span class="keywordtype">unsigned</span> bitdepth = 8);</div>
+<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;<span class="keywordtype">unsigned</span> encode(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out,</div>
+<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;                <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; in, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;                LodePNGColorType colortype = LCT_RGBA, <span class="keywordtype">unsigned</span> bitdepth = 8);</div>
+<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;<span class="comment">Converts 32-bit RGBA raw pixel data into a PNG file on disk.</span></div>
+<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;<span class="comment">Same as the other encode functions, but instead takes a filename as output.</span></div>
+<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;<span class="comment">NOTE: This overwrites existing files without warning!</span></div>
+<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;<span class="keywordtype">unsigned</span> encode(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>&amp; filename,</div>
+<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;                <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;                LodePNGColorType colortype = LCT_RGBA, <span class="keywordtype">unsigned</span> bitdepth = 8);</div>
+<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;<span class="keywordtype">unsigned</span> encode(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>&amp; filename,</div>
+<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;                <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; in, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;                LodePNGColorType colortype = LCT_RGBA, <span class="keywordtype">unsigned</span> bitdepth = 8);</div>
+<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;<span class="preprocessor">#endif //LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;<span class="preprocessor">#endif //LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;} <span class="comment">//namespace lodepng</span></div>
+<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_CPP*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_PNG*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160; </div>
+<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ERROR_TEXT</span></div>
+<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;<span class="comment">/*Returns an English description of the numerical error code.*/</span></div>
+<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;<span class="keyword">const</span> <span class="keywordtype">char</span>* lodepng_error_text(<span class="keywordtype">unsigned</span> code);</div>
+<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ERROR_TEXT*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160; </div>
+<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;<span class="comment">/*Settings for zlib decompression*/</span></div>
+<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;<span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a> <a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>;</div>
+<div class="line"><a name="l00250"></a><span class="lineno"><a class="line" href="struct_lode_p_n_g_decompress_settings.html">  250</a></span>&#160;<span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a></div>
+<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;{</div>
+<div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;  <span class="keywordtype">unsigned</span> ignore_adler32; <span class="comment">/*if 1, continue and don&#39;t give an error message if the Adler32 checksum is corrupted*/</span></div>
+<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160; </div>
+<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;  <span class="comment">/*use custom zlib decoder instead of built in one (default: null)*/</span></div>
+<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;  unsigned (*custom_zlib)(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>**, <span class="keywordtype">size_t</span>*,</div>
+<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;                          <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>*, size_t,</div>
+<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;                          <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>*);</div>
+<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;  <span class="comment">/*use custom deflate decoder instead of built in one (default: null)</span></div>
+<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;<span class="comment">  if custom_zlib is used, custom_deflate is ignored since only the built in</span></div>
+<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;<span class="comment">  zlib function will call custom_deflate*/</span></div>
+<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;  unsigned (*custom_inflate)(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>**, <span class="keywordtype">size_t</span>*,</div>
+<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;                             <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>*, size_t,</div>
+<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;                             <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>*);</div>
+<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160; </div>
+<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;  <span class="keyword">const</span> <span class="keywordtype">void</span>* custom_context; <span class="comment">/*optional custom settings for custom functions*/</span></div>
+<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;};</div>
+<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160; </div>
+<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;<span class="keyword">extern</span> <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a> lodepng_default_decompress_settings;</div>
+<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;<span class="keywordtype">void</span> lodepng_decompress_settings_init(<a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>* settings);</div>
+<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DECODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160; </div>
+<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;<span class="comment">Settings for zlib compression. Tweaking these settings tweaks the balance</span></div>
+<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;<span class="comment">between speed and compression ratio.</span></div>
+<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;<span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a> <a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>;</div>
+<div class="line"><a name="l00278"></a><span class="lineno"><a class="line" href="struct_lode_p_n_g_compress_settings.html">  278</a></span>&#160;<span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a> <span class="comment">/*deflate = compress*/</span></div>
+<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;{</div>
+<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;  <span class="comment">/*LZ77 related settings*/</span></div>
+<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;  <span class="keywordtype">unsigned</span> btype; <span class="comment">/*the block type for LZ (0, 1, 2 or 3, see zlib standard). Should be 2 for proper compression.*/</span></div>
+<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;  <span class="keywordtype">unsigned</span> use_lz77; <span class="comment">/*whether or not to use LZ77. Should be 1 for proper compression.*/</span></div>
+<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;  <span class="keywordtype">unsigned</span> windowsize; <span class="comment">/*must be a power of two &lt;= 32768. higher compresses more but is slower. Typical value: 2048.*/</span></div>
+<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;  <span class="keywordtype">unsigned</span> minmatch; <span class="comment">/*mininum lz77 length. 3 is normally best, 6 can be better for some PNGs. Default: 0*/</span></div>
+<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;  <span class="keywordtype">unsigned</span> nicematch; <span class="comment">/*stop searching if &gt;= this length found. Set to 258 for best compression. Default: 128*/</span></div>
+<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;  <span class="keywordtype">unsigned</span> lazymatching; <span class="comment">/*use lazy matching: better compression but a bit slower. Default: true*/</span></div>
+<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160; </div>
+<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;  <span class="comment">/*use custom zlib encoder instead of built in one (default: null)*/</span></div>
+<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160;  unsigned (*custom_zlib)(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>**, <span class="keywordtype">size_t</span>*,</div>
+<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;                          <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>*, size_t,</div>
+<div class="line"><a name="l00291"></a><span class="lineno">  291</span>&#160;                          <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>*);</div>
+<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;  <span class="comment">/*use custom deflate encoder instead of built in one (default: null)</span></div>
+<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;<span class="comment">  if custom_zlib is used, custom_deflate is ignored since only the built in</span></div>
+<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;<span class="comment">  zlib function will call custom_deflate*/</span></div>
+<div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160;  unsigned (*custom_deflate)(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>**, <span class="keywordtype">size_t</span>*,</div>
+<div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;                             <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>*, size_t,</div>
+<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;                             <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>*);</div>
+<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160; </div>
+<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;  <span class="keyword">const</span> <span class="keywordtype">void</span>* custom_context; <span class="comment">/*optional custom settings for custom functions*/</span></div>
+<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;};</div>
+<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160; </div>
+<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;<span class="keyword">extern</span> <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a> lodepng_default_compress_settings;</div>
+<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;<span class="keywordtype">void</span> lodepng_compress_settings_init(<a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>* settings);</div>
+<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ENCODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160; </div>
+<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_PNG</span></div>
+<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;<span class="comment">Color mode of an image. Contains all information required to decode the pixel</span></div>
+<div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;<span class="comment">bits to RGBA colors. This information is the same as used in the PNG file</span></div>
+<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;<span class="comment">format, and is used both for PNG and raw image data in LodePNG.</span></div>
+<div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00312"></a><span class="lineno"><a class="line" href="struct_lode_p_n_g_color_mode.html">  312</a></span>&#160;<span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a></div>
+<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;{</div>
+<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;  <span class="comment">/*header (IHDR)*/</span></div>
+<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;  LodePNGColorType colortype; <span class="comment">/*color type, see PNG standard or documentation further in this header file*/</span></div>
+<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;  <span class="keywordtype">unsigned</span> bitdepth;  <span class="comment">/*bits per sample, see PNG standard or documentation further in this header file*/</span></div>
+<div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160; </div>
+<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;<span class="comment">  palette (PLTE and tRNS)</span></div>
+<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;<span class="comment">  Dynamically allocated with the colors of the palette, including alpha.</span></div>
+<div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160;<span class="comment">  When encoding a PNG, to store your colors in the palette of the LodePNGColorMode, first use</span></div>
+<div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160;<span class="comment">  lodepng_palette_clear, then for each color use lodepng_palette_add.</span></div>
+<div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;<span class="comment">  If you encode an image without alpha with palette, don&#39;t forget to put value 255 in each A byte of the palette.</span></div>
+<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160;<span class="comment">  When decoding, by default you can ignore this palette, since LodePNG already</span></div>
+<div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;<span class="comment">  fills the palette colors in the pixels of the raw RGBA output.</span></div>
+<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;<span class="comment">  The palette is only supported for color type 3.</span></div>
+<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;  <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* palette; <span class="comment">/*palette in RGBARGBA... order. When allocated, must be either 0, or have size 1024*/</span></div>
+<div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160;  <span class="keywordtype">size_t</span> palettesize; <span class="comment">/*palette size in number of colors (amount of bytes is 4 * palettesize)*/</span></div>
+<div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160; </div>
+<div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;<span class="comment">  transparent color key (tRNS)</span></div>
+<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;<span class="comment">  This color uses the same bit depth as the bitdepth value in this struct, which can be 1-bit to 16-bit.</span></div>
+<div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;<span class="comment">  For greyscale PNGs, r, g and b will all 3 be set to the same.</span></div>
+<div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160;<span class="comment">  When decoding, by default you can ignore this information, since LodePNG sets</span></div>
+<div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;<span class="comment">  pixels with this key to transparent already in the raw RGBA output.</span></div>
+<div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00343"></a><span class="lineno">  343</span>&#160;<span class="comment">  The color key is only supported for color types 0 and 2.</span></div>
+<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00345"></a><span class="lineno">  345</span>&#160;  <span class="keywordtype">unsigned</span> key_defined; <span class="comment">/*is a transparent color key given? 0 = false, 1 = true*/</span></div>
+<div class="line"><a name="l00346"></a><span class="lineno">  346</span>&#160;  <span class="keywordtype">unsigned</span> key_r;       <span class="comment">/*red/greyscale component of color key*/</span></div>
+<div class="line"><a name="l00347"></a><span class="lineno">  347</span>&#160;  <span class="keywordtype">unsigned</span> key_g;       <span class="comment">/*green component of color key*/</span></div>
+<div class="line"><a name="l00348"></a><span class="lineno">  348</span>&#160;  <span class="keywordtype">unsigned</span> key_b;       <span class="comment">/*blue component of color key*/</span></div>
+<div class="line"><a name="l00349"></a><span class="lineno">  349</span>&#160;} <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>;</div>
+<div class="line"><a name="l00350"></a><span class="lineno">  350</span>&#160; </div>
+<div class="line"><a name="l00351"></a><span class="lineno">  351</span>&#160;<span class="comment">/*init, cleanup and copy functions to use with this struct*/</span></div>
+<div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160;<span class="keywordtype">void</span> lodepng_color_mode_init(<a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00353"></a><span class="lineno">  353</span>&#160;<span class="keywordtype">void</span> lodepng_color_mode_cleanup(<a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00354"></a><span class="lineno">  354</span>&#160;<span class="comment">/*return value is error code (0 means no error)*/</span></div>
+<div class="line"><a name="l00355"></a><span class="lineno">  355</span>&#160;<span class="keywordtype">unsigned</span> lodepng_color_mode_copy(<a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* dest, <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* source);</div>
+<div class="line"><a name="l00356"></a><span class="lineno">  356</span>&#160; </div>
+<div class="line"><a name="l00357"></a><span class="lineno">  357</span>&#160;<span class="keywordtype">void</span> lodepng_palette_clear(<a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00358"></a><span class="lineno">  358</span>&#160;<span class="comment">/*add 1 color to the palette*/</span></div>
+<div class="line"><a name="l00359"></a><span class="lineno">  359</span>&#160;<span class="keywordtype">unsigned</span> lodepng_palette_add(<a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info,</div>
+<div class="line"><a name="l00360"></a><span class="lineno">  360</span>&#160;                             <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> r, <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> g, <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> b, <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> a);</div>
+<div class="line"><a name="l00361"></a><span class="lineno">  361</span>&#160; </div>
+<div class="line"><a name="l00362"></a><span class="lineno">  362</span>&#160;<span class="comment">/*get the total amount of bits per pixel, based on colortype and bitdepth in the struct*/</span></div>
+<div class="line"><a name="l00363"></a><span class="lineno">  363</span>&#160;<span class="keywordtype">unsigned</span> lodepng_get_bpp(<span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00364"></a><span class="lineno">  364</span>&#160;<span class="comment">/*get the amount of color channels used, based on colortype in the struct.</span></div>
+<div class="line"><a name="l00365"></a><span class="lineno">  365</span>&#160;<span class="comment">If a palette is used, it counts as 1 channel.*/</span></div>
+<div class="line"><a name="l00366"></a><span class="lineno">  366</span>&#160;<span class="keywordtype">unsigned</span> lodepng_get_channels(<span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00367"></a><span class="lineno">  367</span>&#160;<span class="comment">/*is it a greyscale type? (only colortype 0 or 4)*/</span></div>
+<div class="line"><a name="l00368"></a><span class="lineno">  368</span>&#160;<span class="keywordtype">unsigned</span> lodepng_is_greyscale_type(<span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00369"></a><span class="lineno">  369</span>&#160;<span class="comment">/*has it got an alpha channel? (only colortype 2 or 6)*/</span></div>
+<div class="line"><a name="l00370"></a><span class="lineno">  370</span>&#160;<span class="keywordtype">unsigned</span> lodepng_is_alpha_type(<span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00371"></a><span class="lineno">  371</span>&#160;<span class="comment">/*has it got a palette? (only colortype 3)*/</span></div>
+<div class="line"><a name="l00372"></a><span class="lineno">  372</span>&#160;<span class="keywordtype">unsigned</span> lodepng_is_palette_type(<span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00373"></a><span class="lineno">  373</span>&#160;<span class="comment">/*only returns true if there is a palette and there is a value in the palette with alpha &lt; 255.</span></div>
+<div class="line"><a name="l00374"></a><span class="lineno">  374</span>&#160;<span class="comment">Loops through the palette to check this.*/</span></div>
+<div class="line"><a name="l00375"></a><span class="lineno">  375</span>&#160;<span class="keywordtype">unsigned</span> lodepng_has_palette_alpha(<span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00376"></a><span class="lineno">  376</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00377"></a><span class="lineno">  377</span>&#160;<span class="comment">Check if the given color info indicates the possibility of having non-opaque pixels in the PNG image.</span></div>
+<div class="line"><a name="l00378"></a><span class="lineno">  378</span>&#160;<span class="comment">Returns true if the image can have translucent or invisible pixels (it still be opaque if it doesn&#39;t use such pixels).</span></div>
+<div class="line"><a name="l00379"></a><span class="lineno">  379</span>&#160;<span class="comment">Returns false if the image can only have opaque pixels.</span></div>
+<div class="line"><a name="l00380"></a><span class="lineno">  380</span>&#160;<span class="comment">In detail, it returns true only if it&#39;s a color type with alpha, or has a palette with non-opaque values,</span></div>
+<div class="line"><a name="l00381"></a><span class="lineno">  381</span>&#160;<span class="comment">or if &quot;key_defined&quot; is true.</span></div>
+<div class="line"><a name="l00382"></a><span class="lineno">  382</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00383"></a><span class="lineno">  383</span>&#160;<span class="keywordtype">unsigned</span> lodepng_can_have_alpha(<span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* info);</div>
+<div class="line"><a name="l00384"></a><span class="lineno">  384</span>&#160;<span class="comment">/*Returns the byte size of a raw image buffer with given width, height and color mode*/</span></div>
+<div class="line"><a name="l00385"></a><span class="lineno">  385</span>&#160;<span class="keywordtype">size_t</span> lodepng_get_raw_size(<span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h, <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* color);</div>
+<div class="line"><a name="l00386"></a><span class="lineno">  386</span>&#160; </div>
+<div class="line"><a name="l00387"></a><span class="lineno">  387</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ANCILLARY_CHUNKS</span></div>
+<div class="line"><a name="l00388"></a><span class="lineno">  388</span>&#160;<span class="comment">/*The information of a Time chunk in PNG.*/</span></div>
+<div class="line"><a name="l00389"></a><span class="lineno"><a class="line" href="struct_lode_p_n_g_time.html">  389</a></span>&#160;<span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_time.html">LodePNGTime</a></div>
+<div class="line"><a name="l00390"></a><span class="lineno">  390</span>&#160;{</div>
+<div class="line"><a name="l00391"></a><span class="lineno">  391</span>&#160;  <span class="keywordtype">unsigned</span> year;    <span class="comment">/*2 bytes used (0-65535)*/</span></div>
+<div class="line"><a name="l00392"></a><span class="lineno">  392</span>&#160;  <span class="keywordtype">unsigned</span> month;   <span class="comment">/*1-12*/</span></div>
+<div class="line"><a name="l00393"></a><span class="lineno">  393</span>&#160;  <span class="keywordtype">unsigned</span> day;     <span class="comment">/*1-31*/</span></div>
+<div class="line"><a name="l00394"></a><span class="lineno">  394</span>&#160;  <span class="keywordtype">unsigned</span> hour;    <span class="comment">/*0-23*/</span></div>
+<div class="line"><a name="l00395"></a><span class="lineno">  395</span>&#160;  <span class="keywordtype">unsigned</span> minute;  <span class="comment">/*0-59*/</span></div>
+<div class="line"><a name="l00396"></a><span class="lineno">  396</span>&#160;  <span class="keywordtype">unsigned</span> second;  <span class="comment">/*0-60 (to allow for leap seconds)*/</span></div>
+<div class="line"><a name="l00397"></a><span class="lineno">  397</span>&#160;} <a class="code" href="struct_lode_p_n_g_time.html">LodePNGTime</a>;</div>
+<div class="line"><a name="l00398"></a><span class="lineno">  398</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ANCILLARY_CHUNKS*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00399"></a><span class="lineno">  399</span>&#160; </div>
+<div class="line"><a name="l00400"></a><span class="lineno">  400</span>&#160;<span class="comment">/*Information about the PNG image, except pixels, width and height.*/</span></div>
+<div class="line"><a name="l00401"></a><span class="lineno"><a class="line" href="struct_lode_p_n_g_info.html">  401</a></span>&#160;<span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></div>
+<div class="line"><a name="l00402"></a><span class="lineno">  402</span>&#160;{</div>
+<div class="line"><a name="l00403"></a><span class="lineno">  403</span>&#160;  <span class="comment">/*header (IHDR), palette (PLTE) and transparency (tRNS) chunks*/</span></div>
+<div class="line"><a name="l00404"></a><span class="lineno">  404</span>&#160;  <span class="keywordtype">unsigned</span> compression_method;<span class="comment">/*compression method of the original file. Always 0.*/</span></div>
+<div class="line"><a name="l00405"></a><span class="lineno">  405</span>&#160;  <span class="keywordtype">unsigned</span> filter_method;     <span class="comment">/*filter method of the original file*/</span></div>
+<div class="line"><a name="l00406"></a><span class="lineno">  406</span>&#160;  <span class="keywordtype">unsigned</span> interlace_method;  <span class="comment">/*interlace method of the original file*/</span></div>
+<div class="line"><a name="l00407"></a><span class="lineno">  407</span>&#160;  <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a> color;     <span class="comment">/*color type and bits, palette and transparency of the PNG file*/</span></div>
+<div class="line"><a name="l00408"></a><span class="lineno">  408</span>&#160; </div>
+<div class="line"><a name="l00409"></a><span class="lineno">  409</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ANCILLARY_CHUNKS</span></div>
+<div class="line"><a name="l00410"></a><span class="lineno">  410</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00411"></a><span class="lineno">  411</span>&#160;<span class="comment">  suggested background color chunk (bKGD)</span></div>
+<div class="line"><a name="l00412"></a><span class="lineno">  412</span>&#160;<span class="comment">  This color uses the same color mode as the PNG (except alpha channel), which can be 1-bit to 16-bit.</span></div>
+<div class="line"><a name="l00413"></a><span class="lineno">  413</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00414"></a><span class="lineno">  414</span>&#160;<span class="comment">  For greyscale PNGs, r, g and b will all 3 be set to the same. When encoding</span></div>
+<div class="line"><a name="l00415"></a><span class="lineno">  415</span>&#160;<span class="comment">  the encoder writes the red one. For palette PNGs: When decoding, the RGB value</span></div>
+<div class="line"><a name="l00416"></a><span class="lineno">  416</span>&#160;<span class="comment">  will be stored, not a palette index. But when encoding, specify the index of</span></div>
+<div class="line"><a name="l00417"></a><span class="lineno">  417</span>&#160;<span class="comment">  the palette in background_r, the other two are then ignored.</span></div>
+<div class="line"><a name="l00418"></a><span class="lineno">  418</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00419"></a><span class="lineno">  419</span>&#160;<span class="comment">  The decoder does not use this background color to edit the color of pixels.</span></div>
+<div class="line"><a name="l00420"></a><span class="lineno">  420</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00421"></a><span class="lineno">  421</span>&#160;  <span class="keywordtype">unsigned</span> background_defined; <span class="comment">/*is a suggested background color given?*/</span></div>
+<div class="line"><a name="l00422"></a><span class="lineno">  422</span>&#160;  <span class="keywordtype">unsigned</span> background_r;       <span class="comment">/*red component of suggested background color*/</span></div>
+<div class="line"><a name="l00423"></a><span class="lineno">  423</span>&#160;  <span class="keywordtype">unsigned</span> background_g;       <span class="comment">/*green component of suggested background color*/</span></div>
+<div class="line"><a name="l00424"></a><span class="lineno">  424</span>&#160;  <span class="keywordtype">unsigned</span> background_b;       <span class="comment">/*blue component of suggested background color*/</span></div>
+<div class="line"><a name="l00425"></a><span class="lineno">  425</span>&#160; </div>
+<div class="line"><a name="l00426"></a><span class="lineno">  426</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00427"></a><span class="lineno">  427</span>&#160;<span class="comment">  non-international text chunks (tEXt and zTXt)</span></div>
+<div class="line"><a name="l00428"></a><span class="lineno">  428</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00429"></a><span class="lineno">  429</span>&#160;<span class="comment">  The char** arrays each contain num strings. The actual messages are in</span></div>
+<div class="line"><a name="l00430"></a><span class="lineno">  430</span>&#160;<span class="comment">  text_strings, while text_keys are keywords that give a short description what</span></div>
+<div class="line"><a name="l00431"></a><span class="lineno">  431</span>&#160;<span class="comment">  the actual text represents, e.g. Title, Author, Description, or anything else.</span></div>
+<div class="line"><a name="l00432"></a><span class="lineno">  432</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00433"></a><span class="lineno">  433</span>&#160;<span class="comment">  A keyword is minimum 1 character and maximum 79 characters long. It&#39;s</span></div>
+<div class="line"><a name="l00434"></a><span class="lineno">  434</span>&#160;<span class="comment">  discouraged to use a single line length longer than 79 characters for texts.</span></div>
+<div class="line"><a name="l00435"></a><span class="lineno">  435</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00436"></a><span class="lineno">  436</span>&#160;<span class="comment">  Don&#39;t allocate these text buffers yourself. Use the init/cleanup functions</span></div>
+<div class="line"><a name="l00437"></a><span class="lineno">  437</span>&#160;<span class="comment">  correctly and use lodepng_add_text and lodepng_clear_text.</span></div>
+<div class="line"><a name="l00438"></a><span class="lineno">  438</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00439"></a><span class="lineno">  439</span>&#160;  <span class="keywordtype">size_t</span> text_num; <span class="comment">/*the amount of texts in these char** buffers (there may be more texts in itext)*/</span></div>
+<div class="line"><a name="l00440"></a><span class="lineno">  440</span>&#160;  <span class="keywordtype">char</span>** text_keys; <span class="comment">/*the keyword of a text chunk (e.g. &quot;Comment&quot;)*/</span></div>
+<div class="line"><a name="l00441"></a><span class="lineno">  441</span>&#160;  <span class="keywordtype">char</span>** text_strings; <span class="comment">/*the actual text*/</span></div>
+<div class="line"><a name="l00442"></a><span class="lineno">  442</span>&#160; </div>
+<div class="line"><a name="l00443"></a><span class="lineno">  443</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00444"></a><span class="lineno">  444</span>&#160;<span class="comment">  international text chunks (iTXt)</span></div>
+<div class="line"><a name="l00445"></a><span class="lineno">  445</span>&#160;<span class="comment">  Similar to the non-international text chunks, but with additional strings</span></div>
+<div class="line"><a name="l00446"></a><span class="lineno">  446</span>&#160;<span class="comment">  &quot;langtags&quot; and &quot;transkeys&quot;.</span></div>
+<div class="line"><a name="l00447"></a><span class="lineno">  447</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00448"></a><span class="lineno">  448</span>&#160;  <span class="keywordtype">size_t</span> itext_num; <span class="comment">/*the amount of international texts in this PNG*/</span></div>
+<div class="line"><a name="l00449"></a><span class="lineno">  449</span>&#160;  <span class="keywordtype">char</span>** itext_keys; <span class="comment">/*the English keyword of the text chunk (e.g. &quot;Comment&quot;)*/</span></div>
+<div class="line"><a name="l00450"></a><span class="lineno">  450</span>&#160;  <span class="keywordtype">char</span>** itext_langtags; <span class="comment">/*language tag for this text&#39;s language, ISO/IEC 646 string, e.g. ISO 639 language tag*/</span></div>
+<div class="line"><a name="l00451"></a><span class="lineno">  451</span>&#160;  <span class="keywordtype">char</span>** itext_transkeys; <span class="comment">/*keyword translated to the international language - UTF-8 string*/</span></div>
+<div class="line"><a name="l00452"></a><span class="lineno">  452</span>&#160;  <span class="keywordtype">char</span>** itext_strings; <span class="comment">/*the actual international text - UTF-8 string*/</span></div>
+<div class="line"><a name="l00453"></a><span class="lineno">  453</span>&#160; </div>
+<div class="line"><a name="l00454"></a><span class="lineno">  454</span>&#160;  <span class="comment">/*time chunk (tIME)*/</span></div>
+<div class="line"><a name="l00455"></a><span class="lineno">  455</span>&#160;  <span class="keywordtype">unsigned</span> time_defined; <span class="comment">/*set to 1 to make the encoder generate a tIME chunk*/</span></div>
+<div class="line"><a name="l00456"></a><span class="lineno">  456</span>&#160;  <a class="code" href="struct_lode_p_n_g_time.html">LodePNGTime</a> time;</div>
+<div class="line"><a name="l00457"></a><span class="lineno">  457</span>&#160; </div>
+<div class="line"><a name="l00458"></a><span class="lineno">  458</span>&#160;  <span class="comment">/*phys chunk (pHYs)*/</span></div>
+<div class="line"><a name="l00459"></a><span class="lineno">  459</span>&#160;  <span class="keywordtype">unsigned</span> phys_defined; <span class="comment">/*if 0, there is no pHYs chunk and the values below are undefined, if 1 else there is one*/</span></div>
+<div class="line"><a name="l00460"></a><span class="lineno">  460</span>&#160;  <span class="keywordtype">unsigned</span> phys_x; <span class="comment">/*pixels per unit in x direction*/</span></div>
+<div class="line"><a name="l00461"></a><span class="lineno">  461</span>&#160;  <span class="keywordtype">unsigned</span> phys_y; <span class="comment">/*pixels per unit in y direction*/</span></div>
+<div class="line"><a name="l00462"></a><span class="lineno">  462</span>&#160;  <span class="keywordtype">unsigned</span> phys_unit; <span class="comment">/*may be 0 (unknown unit) or 1 (metre)*/</span></div>
+<div class="line"><a name="l00463"></a><span class="lineno">  463</span>&#160; </div>
+<div class="line"><a name="l00464"></a><span class="lineno">  464</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00465"></a><span class="lineno">  465</span>&#160;<span class="comment">  unknown chunks</span></div>
+<div class="line"><a name="l00466"></a><span class="lineno">  466</span>&#160;<span class="comment">  There are 3 buffers, one for each position in the PNG where unknown chunks can appear</span></div>
+<div class="line"><a name="l00467"></a><span class="lineno">  467</span>&#160;<span class="comment">  each buffer contains all unknown chunks for that position consecutively</span></div>
+<div class="line"><a name="l00468"></a><span class="lineno">  468</span>&#160;<span class="comment">  The 3 buffers are the unknown chunks between certain critical chunks:</span></div>
+<div class="line"><a name="l00469"></a><span class="lineno">  469</span>&#160;<span class="comment">  0: IHDR-PLTE, 1: PLTE-IDAT, 2: IDAT-IEND</span></div>
+<div class="line"><a name="l00470"></a><span class="lineno">  470</span>&#160;<span class="comment">  Do not allocate or traverse this data yourself. Use the chunk traversing functions declared</span></div>
+<div class="line"><a name="l00471"></a><span class="lineno">  471</span>&#160;<span class="comment">  later, such as lodepng_chunk_next and lodepng_chunk_append, to read/write this struct.</span></div>
+<div class="line"><a name="l00472"></a><span class="lineno">  472</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00473"></a><span class="lineno">  473</span>&#160;  <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* unknown_chunks_data[3];</div>
+<div class="line"><a name="l00474"></a><span class="lineno">  474</span>&#160;  <span class="keywordtype">size_t</span> unknown_chunks_size[3]; <span class="comment">/*size in bytes of the unknown chunks, given for protection*/</span></div>
+<div class="line"><a name="l00475"></a><span class="lineno">  475</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ANCILLARY_CHUNKS*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00476"></a><span class="lineno">  476</span>&#160;} <a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>;</div>
+<div class="line"><a name="l00477"></a><span class="lineno">  477</span>&#160; </div>
+<div class="line"><a name="l00478"></a><span class="lineno">  478</span>&#160;<span class="comment">/*init, cleanup and copy functions to use with this struct*/</span></div>
+<div class="line"><a name="l00479"></a><span class="lineno">  479</span>&#160;<span class="keywordtype">void</span> lodepng_info_init(<a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>* info);</div>
+<div class="line"><a name="l00480"></a><span class="lineno">  480</span>&#160;<span class="keywordtype">void</span> lodepng_info_cleanup(<a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>* info);</div>
+<div class="line"><a name="l00481"></a><span class="lineno">  481</span>&#160;<span class="comment">/*return value is error code (0 means no error)*/</span></div>
+<div class="line"><a name="l00482"></a><span class="lineno">  482</span>&#160;<span class="keywordtype">unsigned</span> lodepng_info_copy(<a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>* dest, <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>* source);</div>
+<div class="line"><a name="l00483"></a><span class="lineno">  483</span>&#160; </div>
+<div class="line"><a name="l00484"></a><span class="lineno">  484</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ANCILLARY_CHUNKS</span></div>
+<div class="line"><a name="l00485"></a><span class="lineno">  485</span>&#160;<span class="keywordtype">void</span> lodepng_clear_text(<a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>* info); <span class="comment">/*use this to clear the texts again after you filled them in*/</span></div>
+<div class="line"><a name="l00486"></a><span class="lineno">  486</span>&#160;<span class="keywordtype">unsigned</span> lodepng_add_text(<a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>* info, <span class="keyword">const</span> <span class="keywordtype">char</span>* key, <span class="keyword">const</span> <span class="keywordtype">char</span>* str); <span class="comment">/*push back both texts at once*/</span></div>
+<div class="line"><a name="l00487"></a><span class="lineno">  487</span>&#160; </div>
+<div class="line"><a name="l00488"></a><span class="lineno">  488</span>&#160;<span class="keywordtype">void</span> lodepng_clear_itext(<a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>* info); <span class="comment">/*use this to clear the itexts again after you filled them in*/</span></div>
+<div class="line"><a name="l00489"></a><span class="lineno">  489</span>&#160;<span class="keywordtype">unsigned</span> lodepng_add_itext(<a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>* info, <span class="keyword">const</span> <span class="keywordtype">char</span>* key, <span class="keyword">const</span> <span class="keywordtype">char</span>* langtag,</div>
+<div class="line"><a name="l00490"></a><span class="lineno">  490</span>&#160;                           <span class="keyword">const</span> <span class="keywordtype">char</span>* transkey, <span class="keyword">const</span> <span class="keywordtype">char</span>* str); <span class="comment">/*push back the 4 texts of 1 chunk at once*/</span></div>
+<div class="line"><a name="l00491"></a><span class="lineno">  491</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ANCILLARY_CHUNKS*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00492"></a><span class="lineno">  492</span>&#160; </div>
+<div class="line"><a name="l00493"></a><span class="lineno">  493</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00494"></a><span class="lineno">  494</span>&#160;<span class="comment">Converts raw buffer from one color type to another color type, based on</span></div>
+<div class="line"><a name="l00495"></a><span class="lineno">  495</span>&#160;<span class="comment">LodePNGColorMode structs to describe the input and output color type.</span></div>
+<div class="line"><a name="l00496"></a><span class="lineno">  496</span>&#160;<span class="comment">See the reference manual at the end of this header file to see which color conversions are supported.</span></div>
+<div class="line"><a name="l00497"></a><span class="lineno">  497</span>&#160;<span class="comment">return value = LodePNG error code (0 if all went ok, an error if the conversion isn&#39;t supported)</span></div>
+<div class="line"><a name="l00498"></a><span class="lineno">  498</span>&#160;<span class="comment">The out buffer must have size (w * h * bpp + 7) / 8, where bpp is the bits per pixel</span></div>
+<div class="line"><a name="l00499"></a><span class="lineno">  499</span>&#160;<span class="comment">of the output color type (lodepng_get_bpp)</span></div>
+<div class="line"><a name="l00500"></a><span class="lineno">  500</span>&#160;<span class="comment">The fix_png value works as described in struct LodePNGDecoderSettings.</span></div>
+<div class="line"><a name="l00501"></a><span class="lineno">  501</span>&#160;<span class="comment">Note: for 16-bit per channel colors, uses big endian format like PNG does.</span></div>
+<div class="line"><a name="l00502"></a><span class="lineno">  502</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00503"></a><span class="lineno">  503</span>&#160;<span class="keywordtype">unsigned</span> lodepng_convert(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* out, <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in,</div>
+<div class="line"><a name="l00504"></a><span class="lineno">  504</span>&#160;                         <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* mode_out, <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* mode_in,</div>
+<div class="line"><a name="l00505"></a><span class="lineno">  505</span>&#160;                         <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h, <span class="keywordtype">unsigned</span> fix_png);</div>
+<div class="line"><a name="l00506"></a><span class="lineno">  506</span>&#160; </div>
+<div class="line"><a name="l00507"></a><span class="lineno">  507</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00508"></a><span class="lineno">  508</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00509"></a><span class="lineno">  509</span>&#160;<span class="comment">Settings for the decoder. This contains settings for the PNG and the Zlib</span></div>
+<div class="line"><a name="l00510"></a><span class="lineno">  510</span>&#160;<span class="comment">decoder, but not the Info settings from the Info structs.</span></div>
+<div class="line"><a name="l00511"></a><span class="lineno">  511</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00512"></a><span class="lineno"><a class="line" href="struct_lode_p_n_g_decoder_settings.html">  512</a></span>&#160;<span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a></div>
+<div class="line"><a name="l00513"></a><span class="lineno">  513</span>&#160;{</div>
+<div class="line"><a name="l00514"></a><span class="lineno">  514</span>&#160;  <a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a> zlibsettings; <span class="comment">/*in here is the setting to ignore Adler32 checksums*/</span></div>
+<div class="line"><a name="l00515"></a><span class="lineno">  515</span>&#160; </div>
+<div class="line"><a name="l00516"></a><span class="lineno">  516</span>&#160;  <span class="keywordtype">unsigned</span> ignore_crc; <span class="comment">/*ignore CRC checksums*/</span></div>
+<div class="line"><a name="l00517"></a><span class="lineno">  517</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00518"></a><span class="lineno">  518</span>&#160;<span class="comment">  The fix_png setting, if 1, makes the decoder tolerant towards some PNG images</span></div>
+<div class="line"><a name="l00519"></a><span class="lineno">  519</span>&#160;<span class="comment">  that do not correctly follow the PNG specification. This only supports errors</span></div>
+<div class="line"><a name="l00520"></a><span class="lineno">  520</span>&#160;<span class="comment">  that are fixable, were found in images that are actually used on the web, and</span></div>
+<div class="line"><a name="l00521"></a><span class="lineno">  521</span>&#160;<span class="comment">  are silently tolerated by other decoders as well. Currently only one such fix</span></div>
+<div class="line"><a name="l00522"></a><span class="lineno">  522</span>&#160;<span class="comment">  is implemented: if a palette index is out of bounds given the palette size,</span></div>
+<div class="line"><a name="l00523"></a><span class="lineno">  523</span>&#160;<span class="comment">  interpret it as opaque black.</span></div>
+<div class="line"><a name="l00524"></a><span class="lineno">  524</span>&#160;<span class="comment">  By default this value is 0, which makes it stop with an error on such images.</span></div>
+<div class="line"><a name="l00525"></a><span class="lineno">  525</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00526"></a><span class="lineno">  526</span>&#160;  <span class="keywordtype">unsigned</span> fix_png;</div>
+<div class="line"><a name="l00527"></a><span class="lineno">  527</span>&#160;  <span class="keywordtype">unsigned</span> color_convert; <span class="comment">/*whether to convert the PNG to the color type you want. Default: yes*/</span></div>
+<div class="line"><a name="l00528"></a><span class="lineno">  528</span>&#160; </div>
+<div class="line"><a name="l00529"></a><span class="lineno">  529</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ANCILLARY_CHUNKS</span></div>
+<div class="line"><a name="l00530"></a><span class="lineno">  530</span>&#160;  <span class="keywordtype">unsigned</span> read_text_chunks; <span class="comment">/*if false but remember_unknown_chunks is true, they&#39;re stored in the unknown chunks*/</span></div>
+<div class="line"><a name="l00531"></a><span class="lineno">  531</span>&#160;  <span class="comment">/*store all bytes from unknown chunks in the LodePNGInfo (off by default, useful for a png editor)*/</span></div>
+<div class="line"><a name="l00532"></a><span class="lineno">  532</span>&#160;  <span class="keywordtype">unsigned</span> remember_unknown_chunks;</div>
+<div class="line"><a name="l00533"></a><span class="lineno">  533</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ANCILLARY_CHUNKS*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00534"></a><span class="lineno">  534</span>&#160;} <a class="code" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a>;</div>
+<div class="line"><a name="l00535"></a><span class="lineno">  535</span>&#160; </div>
+<div class="line"><a name="l00536"></a><span class="lineno">  536</span>&#160;<span class="keywordtype">void</span> lodepng_decoder_settings_init(<a class="code" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a>* settings);</div>
+<div class="line"><a name="l00537"></a><span class="lineno">  537</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DECODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00538"></a><span class="lineno">  538</span>&#160; </div>
+<div class="line"><a name="l00539"></a><span class="lineno">  539</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00540"></a><span class="lineno">  540</span>&#160;<span class="comment">/*automatically use color type with less bits per pixel if losslessly possible. Default: AUTO*/</span></div>
+<div class="line"><a name="l00541"></a><span class="lineno">  541</span>&#160;<span class="keyword">typedef</span> <span class="keyword">enum</span> LodePNGFilterStrategy</div>
+<div class="line"><a name="l00542"></a><span class="lineno">  542</span>&#160;{</div>
+<div class="line"><a name="l00543"></a><span class="lineno">  543</span>&#160;  <span class="comment">/*every filter at zero*/</span></div>
+<div class="line"><a name="l00544"></a><span class="lineno">  544</span>&#160;  LFS_ZERO,</div>
+<div class="line"><a name="l00545"></a><span class="lineno">  545</span>&#160;  <span class="comment">/*Use filter that gives minumum sum, as described in the official PNG filter heuristic.*/</span></div>
+<div class="line"><a name="l00546"></a><span class="lineno">  546</span>&#160;  LFS_MINSUM,</div>
+<div class="line"><a name="l00547"></a><span class="lineno">  547</span>&#160;  <span class="comment">/*Use the filter type that gives smallest Shannon entropy for this scanline. Depending</span></div>
+<div class="line"><a name="l00548"></a><span class="lineno">  548</span>&#160;<span class="comment">  on the image, this is better or worse than minsum.*/</span></div>
+<div class="line"><a name="l00549"></a><span class="lineno">  549</span>&#160;  LFS_ENTROPY,</div>
+<div class="line"><a name="l00550"></a><span class="lineno">  550</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00551"></a><span class="lineno">  551</span>&#160;<span class="comment">  Brute-force-search PNG filters by compressing each filter for each scanline.</span></div>
+<div class="line"><a name="l00552"></a><span class="lineno">  552</span>&#160;<span class="comment">  Experimental, very slow, and only rarely gives better compression than MINSUM.</span></div>
+<div class="line"><a name="l00553"></a><span class="lineno">  553</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00554"></a><span class="lineno">  554</span>&#160;  LFS_BRUTE_FORCE,</div>
+<div class="line"><a name="l00555"></a><span class="lineno">  555</span>&#160;  <span class="comment">/*use predefined_filters buffer: you specify the filter type for each scanline*/</span></div>
+<div class="line"><a name="l00556"></a><span class="lineno">  556</span>&#160;  LFS_PREDEFINED</div>
+<div class="line"><a name="l00557"></a><span class="lineno">  557</span>&#160;} LodePNGFilterStrategy;</div>
+<div class="line"><a name="l00558"></a><span class="lineno">  558</span>&#160; </div>
+<div class="line"><a name="l00559"></a><span class="lineno">  559</span>&#160;<span class="comment">/*automatically use color type with less bits per pixel if losslessly possible. Default: LAC_AUTO*/</span></div>
+<div class="line"><a name="l00560"></a><span class="lineno">  560</span>&#160;<span class="keyword">typedef</span> <span class="keyword">enum</span> LodePNGAutoConvert</div>
+<div class="line"><a name="l00561"></a><span class="lineno">  561</span>&#160;{</div>
+<div class="line"><a name="l00562"></a><span class="lineno">  562</span>&#160;  LAC_NO, <span class="comment">/*use color type user requested*/</span></div>
+<div class="line"><a name="l00563"></a><span class="lineno">  563</span>&#160;  LAC_ALPHA, <span class="comment">/*use color type user requested, but if only opaque pixels and RGBA or grey+alpha, use RGB or grey*/</span></div>
+<div class="line"><a name="l00564"></a><span class="lineno">  564</span>&#160;  LAC_AUTO, <span class="comment">/*use PNG color type that can losslessly represent the uncompressed image the smallest possible*/</span></div>
+<div class="line"><a name="l00565"></a><span class="lineno">  565</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00566"></a><span class="lineno">  566</span>&#160;<span class="comment">  like AUTO, but do not choose 1, 2 or 4 bit per pixel types.</span></div>
+<div class="line"><a name="l00567"></a><span class="lineno">  567</span>&#160;<span class="comment">  sometimes a PNG image compresses worse if less than 8 bits per pixels.</span></div>
+<div class="line"><a name="l00568"></a><span class="lineno">  568</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00569"></a><span class="lineno">  569</span>&#160;  LAC_AUTO_NO_NIBBLES,</div>
+<div class="line"><a name="l00570"></a><span class="lineno">  570</span>&#160;  <span class="comment">/*</span></div>
+<div class="line"><a name="l00571"></a><span class="lineno">  571</span>&#160;<span class="comment">  like AUTO, but never choose palette color type. For small images, encoding</span></div>
+<div class="line"><a name="l00572"></a><span class="lineno">  572</span>&#160;<span class="comment">  the palette may take more bytes than what is gained. Note that AUTO also</span></div>
+<div class="line"><a name="l00573"></a><span class="lineno">  573</span>&#160;<span class="comment">  already prevents encoding the palette for extremely small images, but that may</span></div>
+<div class="line"><a name="l00574"></a><span class="lineno">  574</span>&#160;<span class="comment">  not be sufficient because due to the compression it cannot predict when to</span></div>
+<div class="line"><a name="l00575"></a><span class="lineno">  575</span>&#160;<span class="comment">  switch.</span></div>
+<div class="line"><a name="l00576"></a><span class="lineno">  576</span>&#160;<span class="comment">  */</span></div>
+<div class="line"><a name="l00577"></a><span class="lineno">  577</span>&#160;  LAC_AUTO_NO_PALETTE,</div>
+<div class="line"><a name="l00578"></a><span class="lineno">  578</span>&#160;  LAC_AUTO_NO_NIBBLES_NO_PALETTE</div>
+<div class="line"><a name="l00579"></a><span class="lineno">  579</span>&#160;} LodePNGAutoConvert;</div>
+<div class="line"><a name="l00580"></a><span class="lineno">  580</span>&#160; </div>
+<div class="line"><a name="l00581"></a><span class="lineno">  581</span>&#160; </div>
+<div class="line"><a name="l00582"></a><span class="lineno">  582</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00583"></a><span class="lineno">  583</span>&#160;<span class="comment">Automatically chooses color type that gives smallest amount of bits in the</span></div>
+<div class="line"><a name="l00584"></a><span class="lineno">  584</span>&#160;<span class="comment">output image, e.g. grey if there are only greyscale pixels, palette if there</span></div>
+<div class="line"><a name="l00585"></a><span class="lineno">  585</span>&#160;<span class="comment">are less than 256 colors, ...</span></div>
+<div class="line"><a name="l00586"></a><span class="lineno">  586</span>&#160;<span class="comment">The auto_convert parameter allows limiting it to not use palette, ...</span></div>
+<div class="line"><a name="l00587"></a><span class="lineno">  587</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00588"></a><span class="lineno">  588</span>&#160;<span class="keywordtype">unsigned</span> lodepng_auto_choose_color(<a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* mode_out,</div>
+<div class="line"><a name="l00589"></a><span class="lineno">  589</span>&#160;                                   <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* image, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00590"></a><span class="lineno">  590</span>&#160;                                   <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>* mode_in,</div>
+<div class="line"><a name="l00591"></a><span class="lineno">  591</span>&#160;                                   LodePNGAutoConvert auto_convert);</div>
+<div class="line"><a name="l00592"></a><span class="lineno">  592</span>&#160; </div>
+<div class="line"><a name="l00593"></a><span class="lineno">  593</span>&#160;<span class="comment">/*Settings for the encoder.*/</span></div>
+<div class="line"><a name="l00594"></a><span class="lineno"><a class="line" href="struct_lode_p_n_g_encoder_settings.html">  594</a></span>&#160;<span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></div>
+<div class="line"><a name="l00595"></a><span class="lineno">  595</span>&#160;{</div>
+<div class="line"><a name="l00596"></a><span class="lineno">  596</span>&#160;  <a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a> zlibsettings; <span class="comment">/*settings for the zlib encoder, such as window size, ...*/</span></div>
+<div class="line"><a name="l00597"></a><span class="lineno">  597</span>&#160; </div>
+<div class="line"><a name="l00598"></a><span class="lineno">  598</span>&#160;  LodePNGAutoConvert auto_convert; <span class="comment">/*how to automatically choose output PNG color type, if at all*/</span></div>
+<div class="line"><a name="l00599"></a><span class="lineno">  599</span>&#160; </div>
+<div class="line"><a name="l00600"></a><span class="lineno">  600</span>&#160;  <span class="comment">/*If true, follows the official PNG heuristic: if the PNG uses a palette or lower than</span></div>
+<div class="line"><a name="l00601"></a><span class="lineno">  601</span>&#160;<span class="comment">  8 bit depth, set all filters to zero. Otherwise use the filter_strategy. Note that to</span></div>
+<div class="line"><a name="l00602"></a><span class="lineno">  602</span>&#160;<span class="comment">  completely follow the official PNG heuristic, filter_palette_zero must be true and</span></div>
+<div class="line"><a name="l00603"></a><span class="lineno">  603</span>&#160;<span class="comment">  filter_strategy must be LFS_MINSUM*/</span></div>
+<div class="line"><a name="l00604"></a><span class="lineno">  604</span>&#160;  <span class="keywordtype">unsigned</span> filter_palette_zero;</div>
+<div class="line"><a name="l00605"></a><span class="lineno">  605</span>&#160;  <span class="comment">/*Which filter strategy to use when not using zeroes due to filter_palette_zero.</span></div>
+<div class="line"><a name="l00606"></a><span class="lineno">  606</span>&#160;<span class="comment">  Set filter_palette_zero to 0 to ensure always using your chosen strategy. Default: LFS_MINSUM*/</span></div>
+<div class="line"><a name="l00607"></a><span class="lineno">  607</span>&#160;  LodePNGFilterStrategy filter_strategy;</div>
+<div class="line"><a name="l00608"></a><span class="lineno">  608</span>&#160;  <span class="comment">/*used if filter_strategy is LFS_PREDEFINED. In that case, this must point to a buffer with</span></div>
+<div class="line"><a name="l00609"></a><span class="lineno">  609</span>&#160;<span class="comment">  the same length as the amount of scanlines in the image, and each value must &lt;= 5. You</span></div>
+<div class="line"><a name="l00610"></a><span class="lineno">  610</span>&#160;<span class="comment">  have to cleanup this buffer, LodePNG will never free it. Don&#39;t forget that filter_palette_zero</span></div>
+<div class="line"><a name="l00611"></a><span class="lineno">  611</span>&#160;<span class="comment">  must be set to 0 to ensure this is also used on palette or low bitdepth images.*/</span></div>
+<div class="line"><a name="l00612"></a><span class="lineno">  612</span>&#160;  <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* predefined_filters;</div>
+<div class="line"><a name="l00613"></a><span class="lineno">  613</span>&#160; </div>
+<div class="line"><a name="l00614"></a><span class="lineno">  614</span>&#160;  <span class="comment">/*force creating a PLTE chunk if colortype is 2 or 6 (= a suggested palette).</span></div>
+<div class="line"><a name="l00615"></a><span class="lineno">  615</span>&#160;<span class="comment">  If colortype is 3, PLTE is _always_ created.*/</span></div>
+<div class="line"><a name="l00616"></a><span class="lineno">  616</span>&#160;  <span class="keywordtype">unsigned</span> force_palette;</div>
+<div class="line"><a name="l00617"></a><span class="lineno">  617</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ANCILLARY_CHUNKS</span></div>
+<div class="line"><a name="l00618"></a><span class="lineno">  618</span>&#160;  <span class="comment">/*add LodePNG identifier and version as a text chunk, for debugging*/</span></div>
+<div class="line"><a name="l00619"></a><span class="lineno">  619</span>&#160;  <span class="keywordtype">unsigned</span> add_id;</div>
+<div class="line"><a name="l00620"></a><span class="lineno">  620</span>&#160;  <span class="comment">/*encode text chunks as zTXt chunks instead of tEXt chunks, and use compression in iTXt chunks*/</span></div>
+<div class="line"><a name="l00621"></a><span class="lineno">  621</span>&#160;  <span class="keywordtype">unsigned</span> text_compression;</div>
+<div class="line"><a name="l00622"></a><span class="lineno">  622</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ANCILLARY_CHUNKS*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00623"></a><span class="lineno">  623</span>&#160;} <a class="code" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>;</div>
+<div class="line"><a name="l00624"></a><span class="lineno">  624</span>&#160; </div>
+<div class="line"><a name="l00625"></a><span class="lineno">  625</span>&#160;<span class="keywordtype">void</span> lodepng_encoder_settings_init(<a class="code" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>* settings);</div>
+<div class="line"><a name="l00626"></a><span class="lineno">  626</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ENCODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00627"></a><span class="lineno">  627</span>&#160; </div>
+<div class="line"><a name="l00628"></a><span class="lineno">  628</span>&#160; </div>
+<div class="line"><a name="l00629"></a><span class="lineno">  629</span>&#160;<span class="preprocessor">#if defined(LODEPNG_COMPILE_DECODER) || defined(LODEPNG_COMPILE_ENCODER)</span></div>
+<div class="line"><a name="l00630"></a><span class="lineno">  630</span>&#160;<span class="comment">/*The settings, state and information for extended encoding and decoding.*/</span></div>
+<div class="line"><a name="l00631"></a><span class="lineno"><a class="line" href="struct_lode_p_n_g_state.html">  631</a></span>&#160;<span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a></div>
+<div class="line"><a name="l00632"></a><span class="lineno">  632</span>&#160;{</div>
+<div class="line"><a name="l00633"></a><span class="lineno">  633</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00634"></a><span class="lineno">  634</span>&#160;  <a class="code" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a> decoder; <span class="comment">/*the decoding settings*/</span></div>
+<div class="line"><a name="l00635"></a><span class="lineno">  635</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DECODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00636"></a><span class="lineno">  636</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00637"></a><span class="lineno">  637</span>&#160;  <a class="code" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a> encoder; <span class="comment">/*the encoding settings*/</span></div>
+<div class="line"><a name="l00638"></a><span class="lineno">  638</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ENCODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00639"></a><span class="lineno">  639</span>&#160;  <a class="code" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a> info_raw; <span class="comment">/*specifies the format in which you would like to get the raw pixel buffer*/</span></div>
+<div class="line"><a name="l00640"></a><span class="lineno">  640</span>&#160;  <a class="code" href="struct_lode_p_n_g_info.html">LodePNGInfo</a> info_png; <span class="comment">/*info of the PNG image obtained after decoding*/</span></div>
+<div class="line"><a name="l00641"></a><span class="lineno">  641</span>&#160;  <span class="keywordtype">unsigned</span> error;</div>
+<div class="line"><a name="l00642"></a><span class="lineno">  642</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_CPP</span></div>
+<div class="line"><a name="l00643"></a><span class="lineno">  643</span>&#160;  <span class="comment">//For the lodepng::State subclass.</span></div>
+<div class="line"><a name="l00644"></a><span class="lineno">  644</span>&#160;  <span class="keyword">virtual</span> ~<a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a>(){}</div>
+<div class="line"><a name="l00645"></a><span class="lineno">  645</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00646"></a><span class="lineno">  646</span>&#160;} <a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a>;</div>
+<div class="line"><a name="l00647"></a><span class="lineno">  647</span>&#160; </div>
+<div class="line"><a name="l00648"></a><span class="lineno">  648</span>&#160;<span class="comment">/*init, cleanup and copy functions to use with this struct*/</span></div>
+<div class="line"><a name="l00649"></a><span class="lineno">  649</span>&#160;<span class="keywordtype">void</span> lodepng_state_init(<a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a>* state);</div>
+<div class="line"><a name="l00650"></a><span class="lineno">  650</span>&#160;<span class="keywordtype">void</span> lodepng_state_cleanup(<a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a>* state);</div>
+<div class="line"><a name="l00651"></a><span class="lineno">  651</span>&#160;<span class="keywordtype">void</span> lodepng_state_copy(<a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a>* dest, <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a>* source);</div>
+<div class="line"><a name="l00652"></a><span class="lineno">  652</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/* defined(LODEPNG_COMPILE_DECODER) || defined(LODEPNG_COMPILE_ENCODER) */</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00653"></a><span class="lineno">  653</span>&#160; </div>
+<div class="line"><a name="l00654"></a><span class="lineno">  654</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00655"></a><span class="lineno">  655</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00656"></a><span class="lineno">  656</span>&#160;<span class="comment">Same as lodepng_decode_memory, but uses a LodePNGState to allow custom settings and</span></div>
+<div class="line"><a name="l00657"></a><span class="lineno">  657</span>&#160;<span class="comment">getting much more information about the PNG image and color mode.</span></div>
+<div class="line"><a name="l00658"></a><span class="lineno">  658</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00659"></a><span class="lineno">  659</span>&#160;<span class="keywordtype">unsigned</span> lodepng_decode(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">unsigned</span>* w, <span class="keywordtype">unsigned</span>* h,</div>
+<div class="line"><a name="l00660"></a><span class="lineno">  660</span>&#160;                        <a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a>* state,</div>
+<div class="line"><a name="l00661"></a><span class="lineno">  661</span>&#160;                        <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize);</div>
+<div class="line"><a name="l00662"></a><span class="lineno">  662</span>&#160; </div>
+<div class="line"><a name="l00663"></a><span class="lineno">  663</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00664"></a><span class="lineno">  664</span>&#160;<span class="comment">Read the PNG header, but not the actual data. This returns only the information</span></div>
+<div class="line"><a name="l00665"></a><span class="lineno">  665</span>&#160;<span class="comment">that is in the header chunk of the PNG, such as width, height and color type. The</span></div>
+<div class="line"><a name="l00666"></a><span class="lineno">  666</span>&#160;<span class="comment">information is placed in the info_png field of the LodePNGState.</span></div>
+<div class="line"><a name="l00667"></a><span class="lineno">  667</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00668"></a><span class="lineno">  668</span>&#160;<span class="keywordtype">unsigned</span> lodepng_inspect(<span class="keywordtype">unsigned</span>* w, <span class="keywordtype">unsigned</span>* h,</div>
+<div class="line"><a name="l00669"></a><span class="lineno">  669</span>&#160;                         <a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a>* state,</div>
+<div class="line"><a name="l00670"></a><span class="lineno">  670</span>&#160;                         <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize);</div>
+<div class="line"><a name="l00671"></a><span class="lineno">  671</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DECODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00672"></a><span class="lineno">  672</span>&#160; </div>
+<div class="line"><a name="l00673"></a><span class="lineno">  673</span>&#160; </div>
+<div class="line"><a name="l00674"></a><span class="lineno">  674</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00675"></a><span class="lineno">  675</span>&#160;<span class="comment">/*This function allocates the out buffer with standard malloc and stores the size in *outsize.*/</span></div>
+<div class="line"><a name="l00676"></a><span class="lineno">  676</span>&#160;<span class="keywordtype">unsigned</span> lodepng_encode(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outsize,</div>
+<div class="line"><a name="l00677"></a><span class="lineno">  677</span>&#160;                        <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* image, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00678"></a><span class="lineno">  678</span>&#160;                        <a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a>* state);</div>
+<div class="line"><a name="l00679"></a><span class="lineno">  679</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ENCODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00680"></a><span class="lineno">  680</span>&#160; </div>
+<div class="line"><a name="l00681"></a><span class="lineno">  681</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00682"></a><span class="lineno">  682</span>&#160;<span class="comment">The lodepng_chunk functions are normally not needed, except to traverse the</span></div>
+<div class="line"><a name="l00683"></a><span class="lineno">  683</span>&#160;<span class="comment">unknown chunks stored in the LodePNGInfo struct, or add new ones to it.</span></div>
+<div class="line"><a name="l00684"></a><span class="lineno">  684</span>&#160;<span class="comment">It also allows traversing the chunks of an encoded PNG file yourself.</span></div>
+<div class="line"><a name="l00685"></a><span class="lineno">  685</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00686"></a><span class="lineno">  686</span>&#160;<span class="comment">PNG standard chunk naming conventions:</span></div>
+<div class="line"><a name="l00687"></a><span class="lineno">  687</span>&#160;<span class="comment">First byte: uppercase = critical, lowercase = ancillary</span></div>
+<div class="line"><a name="l00688"></a><span class="lineno">  688</span>&#160;<span class="comment">Second byte: uppercase = public, lowercase = private</span></div>
+<div class="line"><a name="l00689"></a><span class="lineno">  689</span>&#160;<span class="comment">Third byte: must be uppercase</span></div>
+<div class="line"><a name="l00690"></a><span class="lineno">  690</span>&#160;<span class="comment">Fourth byte: uppercase = unsafe to copy, lowercase = safe to copy</span></div>
+<div class="line"><a name="l00691"></a><span class="lineno">  691</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00692"></a><span class="lineno">  692</span>&#160; </div>
+<div class="line"><a name="l00693"></a><span class="lineno">  693</span>&#160;<span class="comment">/*get the length of the data of the chunk. Total chunk length has 12 bytes more.*/</span></div>
+<div class="line"><a name="l00694"></a><span class="lineno">  694</span>&#160;<span class="keywordtype">unsigned</span> lodepng_chunk_length(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00695"></a><span class="lineno">  695</span>&#160; </div>
+<div class="line"><a name="l00696"></a><span class="lineno">  696</span>&#160;<span class="comment">/*puts the 4-byte type in null terminated string*/</span></div>
+<div class="line"><a name="l00697"></a><span class="lineno">  697</span>&#160;<span class="keywordtype">void</span> lodepng_chunk_type(<span class="keywordtype">char</span> type[5], <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00698"></a><span class="lineno">  698</span>&#160; </div>
+<div class="line"><a name="l00699"></a><span class="lineno">  699</span>&#160;<span class="comment">/*check if the type is the given type*/</span></div>
+<div class="line"><a name="l00700"></a><span class="lineno">  700</span>&#160;<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> lodepng_chunk_type_equals(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk, <span class="keyword">const</span> <span class="keywordtype">char</span>* type);</div>
+<div class="line"><a name="l00701"></a><span class="lineno">  701</span>&#160; </div>
+<div class="line"><a name="l00702"></a><span class="lineno">  702</span>&#160;<span class="comment">/*0: it&#39;s one of the critical chunk types, 1: it&#39;s an ancillary chunk (see PNG standard)*/</span></div>
+<div class="line"><a name="l00703"></a><span class="lineno">  703</span>&#160;<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> lodepng_chunk_ancillary(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00704"></a><span class="lineno">  704</span>&#160; </div>
+<div class="line"><a name="l00705"></a><span class="lineno">  705</span>&#160;<span class="comment">/*0: public, 1: private (see PNG standard)*/</span></div>
+<div class="line"><a name="l00706"></a><span class="lineno">  706</span>&#160;<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> lodepng_chunk_private(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00707"></a><span class="lineno">  707</span>&#160; </div>
+<div class="line"><a name="l00708"></a><span class="lineno">  708</span>&#160;<span class="comment">/*0: the chunk is unsafe to copy, 1: the chunk is safe to copy (see PNG standard)*/</span></div>
+<div class="line"><a name="l00709"></a><span class="lineno">  709</span>&#160;<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> lodepng_chunk_safetocopy(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00710"></a><span class="lineno">  710</span>&#160; </div>
+<div class="line"><a name="l00711"></a><span class="lineno">  711</span>&#160;<span class="comment">/*get pointer to the data of the chunk, where the input points to the header of the chunk*/</span></div>
+<div class="line"><a name="l00712"></a><span class="lineno">  712</span>&#160;<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* lodepng_chunk_data(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00713"></a><span class="lineno">  713</span>&#160;<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* lodepng_chunk_data_const(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00714"></a><span class="lineno">  714</span>&#160; </div>
+<div class="line"><a name="l00715"></a><span class="lineno">  715</span>&#160;<span class="comment">/*returns 0 if the crc is correct, 1 if it&#39;s incorrect (0 for OK as usual!)*/</span></div>
+<div class="line"><a name="l00716"></a><span class="lineno">  716</span>&#160;<span class="keywordtype">unsigned</span> lodepng_chunk_check_crc(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00717"></a><span class="lineno">  717</span>&#160; </div>
+<div class="line"><a name="l00718"></a><span class="lineno">  718</span>&#160;<span class="comment">/*generates the correct CRC from the data and puts it in the last 4 bytes of the chunk*/</span></div>
+<div class="line"><a name="l00719"></a><span class="lineno">  719</span>&#160;<span class="keywordtype">void</span> lodepng_chunk_generate_crc(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00720"></a><span class="lineno">  720</span>&#160; </div>
+<div class="line"><a name="l00721"></a><span class="lineno">  721</span>&#160;<span class="comment">/*iterate to next chunks. don&#39;t use on IEND chunk, as there is no next chunk then*/</span></div>
+<div class="line"><a name="l00722"></a><span class="lineno">  722</span>&#160;<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* lodepng_chunk_next(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00723"></a><span class="lineno">  723</span>&#160;<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* lodepng_chunk_next_const(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00724"></a><span class="lineno">  724</span>&#160; </div>
+<div class="line"><a name="l00725"></a><span class="lineno">  725</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00726"></a><span class="lineno">  726</span>&#160;<span class="comment">Appends chunk to the data in out. The given chunk should already have its chunk header.</span></div>
+<div class="line"><a name="l00727"></a><span class="lineno">  727</span>&#160;<span class="comment">The out variable and outlength are updated to reflect the new reallocated buffer.</span></div>
+<div class="line"><a name="l00728"></a><span class="lineno">  728</span>&#160;<span class="comment">Returns error code (0 if it went ok)</span></div>
+<div class="line"><a name="l00729"></a><span class="lineno">  729</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00730"></a><span class="lineno">  730</span>&#160;<span class="keywordtype">unsigned</span> lodepng_chunk_append(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outlength, <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* chunk);</div>
+<div class="line"><a name="l00731"></a><span class="lineno">  731</span>&#160; </div>
+<div class="line"><a name="l00732"></a><span class="lineno">  732</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00733"></a><span class="lineno">  733</span>&#160;<span class="comment">Appends new chunk to out. The chunk to append is given by giving its length, type</span></div>
+<div class="line"><a name="l00734"></a><span class="lineno">  734</span>&#160;<span class="comment">and data separately. The type is a 4-letter string.</span></div>
+<div class="line"><a name="l00735"></a><span class="lineno">  735</span>&#160;<span class="comment">The out variable and outlength are updated to reflect the new reallocated buffer.</span></div>
+<div class="line"><a name="l00736"></a><span class="lineno">  736</span>&#160;<span class="comment">Returne error code (0 if it went ok)</span></div>
+<div class="line"><a name="l00737"></a><span class="lineno">  737</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00738"></a><span class="lineno">  738</span>&#160;<span class="keywordtype">unsigned</span> lodepng_chunk_create(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outlength, <span class="keywordtype">unsigned</span> length,</div>
+<div class="line"><a name="l00739"></a><span class="lineno">  739</span>&#160;                              <span class="keyword">const</span> <span class="keywordtype">char</span>* type, <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* data);</div>
+<div class="line"><a name="l00740"></a><span class="lineno">  740</span>&#160; </div>
+<div class="line"><a name="l00741"></a><span class="lineno">  741</span>&#160; </div>
+<div class="line"><a name="l00742"></a><span class="lineno">  742</span>&#160;<span class="comment">/*Calculate CRC32 of buffer*/</span></div>
+<div class="line"><a name="l00743"></a><span class="lineno">  743</span>&#160;<span class="keywordtype">unsigned</span> lodepng_crc32(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* buf, <span class="keywordtype">size_t</span> len);</div>
+<div class="line"><a name="l00744"></a><span class="lineno">  744</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_PNG*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00745"></a><span class="lineno">  745</span>&#160; </div>
+<div class="line"><a name="l00746"></a><span class="lineno">  746</span>&#160; </div>
+<div class="line"><a name="l00747"></a><span class="lineno">  747</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ZLIB</span></div>
+<div class="line"><a name="l00748"></a><span class="lineno">  748</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00749"></a><span class="lineno">  749</span>&#160;<span class="comment">This zlib part can be used independently to zlib compress and decompress a</span></div>
+<div class="line"><a name="l00750"></a><span class="lineno">  750</span>&#160;<span class="comment">buffer. It cannot be used to create gzip files however, and it only supports the</span></div>
+<div class="line"><a name="l00751"></a><span class="lineno">  751</span>&#160;<span class="comment">part of zlib that is required for PNG, it does not support dictionaries.</span></div>
+<div class="line"><a name="l00752"></a><span class="lineno">  752</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00753"></a><span class="lineno">  753</span>&#160; </div>
+<div class="line"><a name="l00754"></a><span class="lineno">  754</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00755"></a><span class="lineno">  755</span>&#160;<span class="comment">/*Inflate a buffer. Inflate is the decompression step of deflate. Out buffer must be freed after use.*/</span></div>
+<div class="line"><a name="l00756"></a><span class="lineno">  756</span>&#160;<span class="keywordtype">unsigned</span> lodepng_inflate(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outsize,</div>
+<div class="line"><a name="l00757"></a><span class="lineno">  757</span>&#160;                         <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize,</div>
+<div class="line"><a name="l00758"></a><span class="lineno">  758</span>&#160;                         <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>* settings);</div>
+<div class="line"><a name="l00759"></a><span class="lineno">  759</span>&#160; </div>
+<div class="line"><a name="l00760"></a><span class="lineno">  760</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00761"></a><span class="lineno">  761</span>&#160;<span class="comment">Decompresses Zlib data. Reallocates the out buffer and appends the data. The</span></div>
+<div class="line"><a name="l00762"></a><span class="lineno">  762</span>&#160;<span class="comment">data must be according to the zlib specification.</span></div>
+<div class="line"><a name="l00763"></a><span class="lineno">  763</span>&#160;<span class="comment">Either, *out must be NULL and *outsize must be 0, or, *out must be a valid</span></div>
+<div class="line"><a name="l00764"></a><span class="lineno">  764</span>&#160;<span class="comment">buffer and *outsize its size in bytes. out must be freed by user after usage.</span></div>
+<div class="line"><a name="l00765"></a><span class="lineno">  765</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00766"></a><span class="lineno">  766</span>&#160;<span class="keywordtype">unsigned</span> lodepng_zlib_decompress(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outsize,</div>
+<div class="line"><a name="l00767"></a><span class="lineno">  767</span>&#160;                                 <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize,</div>
+<div class="line"><a name="l00768"></a><span class="lineno">  768</span>&#160;                                 <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>* settings);</div>
+<div class="line"><a name="l00769"></a><span class="lineno">  769</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DECODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00770"></a><span class="lineno">  770</span>&#160; </div>
+<div class="line"><a name="l00771"></a><span class="lineno">  771</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00772"></a><span class="lineno">  772</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00773"></a><span class="lineno">  773</span>&#160;<span class="comment">Compresses data with Zlib. Reallocates the out buffer and appends the data.</span></div>
+<div class="line"><a name="l00774"></a><span class="lineno">  774</span>&#160;<span class="comment">Zlib adds a small header and trailer around the deflate data.</span></div>
+<div class="line"><a name="l00775"></a><span class="lineno">  775</span>&#160;<span class="comment">The data is output in the format of the zlib specification.</span></div>
+<div class="line"><a name="l00776"></a><span class="lineno">  776</span>&#160;<span class="comment">Either, *out must be NULL and *outsize must be 0, or, *out must be a valid</span></div>
+<div class="line"><a name="l00777"></a><span class="lineno">  777</span>&#160;<span class="comment">buffer and *outsize its size in bytes. out must be freed by user after usage.</span></div>
+<div class="line"><a name="l00778"></a><span class="lineno">  778</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00779"></a><span class="lineno">  779</span>&#160;<span class="keywordtype">unsigned</span> lodepng_zlib_compress(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outsize,</div>
+<div class="line"><a name="l00780"></a><span class="lineno">  780</span>&#160;                               <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize,</div>
+<div class="line"><a name="l00781"></a><span class="lineno">  781</span>&#160;                               <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>* settings);</div>
+<div class="line"><a name="l00782"></a><span class="lineno">  782</span>&#160; </div>
+<div class="line"><a name="l00783"></a><span class="lineno">  783</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00784"></a><span class="lineno">  784</span>&#160;<span class="comment">Find length-limited Huffman code for given frequencies. This function is in the</span></div>
+<div class="line"><a name="l00785"></a><span class="lineno">  785</span>&#160;<span class="comment">public interface only for tests, it&#39;s used internally by lodepng_deflate.</span></div>
+<div class="line"><a name="l00786"></a><span class="lineno">  786</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00787"></a><span class="lineno">  787</span>&#160;<span class="keywordtype">unsigned</span> lodepng_huffman_code_lengths(<span class="keywordtype">unsigned</span>* lengths, <span class="keyword">const</span> <span class="keywordtype">unsigned</span>* frequencies,</div>
+<div class="line"><a name="l00788"></a><span class="lineno">  788</span>&#160;                                      <span class="keywordtype">size_t</span> numcodes, <span class="keywordtype">unsigned</span> maxbitlen);</div>
+<div class="line"><a name="l00789"></a><span class="lineno">  789</span>&#160; </div>
+<div class="line"><a name="l00790"></a><span class="lineno">  790</span>&#160;<span class="comment">/*Compress a buffer with deflate. See RFC 1951. Out buffer must be freed after use.*/</span></div>
+<div class="line"><a name="l00791"></a><span class="lineno">  791</span>&#160;<span class="keywordtype">unsigned</span> lodepng_deflate(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outsize,</div>
+<div class="line"><a name="l00792"></a><span class="lineno">  792</span>&#160;                         <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize,</div>
+<div class="line"><a name="l00793"></a><span class="lineno">  793</span>&#160;                         <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>* settings);</div>
+<div class="line"><a name="l00794"></a><span class="lineno">  794</span>&#160; </div>
+<div class="line"><a name="l00795"></a><span class="lineno">  795</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ENCODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00796"></a><span class="lineno">  796</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ZLIB*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00797"></a><span class="lineno">  797</span>&#160; </div>
+<div class="line"><a name="l00798"></a><span class="lineno">  798</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00799"></a><span class="lineno">  799</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00800"></a><span class="lineno">  800</span>&#160;<span class="comment">Load a file from disk into buffer. The function allocates the out buffer, and</span></div>
+<div class="line"><a name="l00801"></a><span class="lineno">  801</span>&#160;<span class="comment">after usage you should free it.</span></div>
+<div class="line"><a name="l00802"></a><span class="lineno">  802</span>&#160;<span class="comment">out: output parameter, contains pointer to loaded buffer.</span></div>
+<div class="line"><a name="l00803"></a><span class="lineno">  803</span>&#160;<span class="comment">outsize: output parameter, size of the allocated out buffer</span></div>
+<div class="line"><a name="l00804"></a><span class="lineno">  804</span>&#160;<span class="comment">filename: the path to the file to load</span></div>
+<div class="line"><a name="l00805"></a><span class="lineno">  805</span>&#160;<span class="comment">return value: error code (0 means ok)</span></div>
+<div class="line"><a name="l00806"></a><span class="lineno">  806</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00807"></a><span class="lineno">  807</span>&#160;<span class="keywordtype">unsigned</span> lodepng_load_file(<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>** out, <span class="keywordtype">size_t</span>* outsize, <span class="keyword">const</span> <span class="keywordtype">char</span>* filename);</div>
+<div class="line"><a name="l00808"></a><span class="lineno">  808</span>&#160; </div>
+<div class="line"><a name="l00809"></a><span class="lineno">  809</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00810"></a><span class="lineno">  810</span>&#160;<span class="comment">Save a file from buffer to disk. Warning, if it exists, this function overwrites</span></div>
+<div class="line"><a name="l00811"></a><span class="lineno">  811</span>&#160;<span class="comment">the file without warning!</span></div>
+<div class="line"><a name="l00812"></a><span class="lineno">  812</span>&#160;<span class="comment">buffer: the buffer to write</span></div>
+<div class="line"><a name="l00813"></a><span class="lineno">  813</span>&#160;<span class="comment">buffersize: size of the buffer to write</span></div>
+<div class="line"><a name="l00814"></a><span class="lineno">  814</span>&#160;<span class="comment">filename: the path to the file to save to</span></div>
+<div class="line"><a name="l00815"></a><span class="lineno">  815</span>&#160;<span class="comment">return value: error code (0 means ok)</span></div>
+<div class="line"><a name="l00816"></a><span class="lineno">  816</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00817"></a><span class="lineno">  817</span>&#160;<span class="keywordtype">unsigned</span> lodepng_save_file(<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* buffer, <span class="keywordtype">size_t</span> buffersize, <span class="keyword">const</span> <span class="keywordtype">char</span>* filename);</div>
+<div class="line"><a name="l00818"></a><span class="lineno">  818</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DISK*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00819"></a><span class="lineno">  819</span>&#160; </div>
+<div class="line"><a name="l00820"></a><span class="lineno">  820</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_CPP</span></div>
+<div class="line"><a name="l00821"></a><span class="lineno">  821</span>&#160;<span class="comment">//The LodePNG C++ wrapper uses std::vectors instead of manually allocated memory buffers.</span></div>
+<div class="line"><a name="l00822"></a><span class="lineno">  822</span>&#160;<span class="keyword">namespace </span>lodepng</div>
+<div class="line"><a name="l00823"></a><span class="lineno">  823</span>&#160;{</div>
+<div class="line"><a name="l00824"></a><span class="lineno">  824</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_PNG</span></div>
+<div class="line"><a name="l00825"></a><span class="lineno">  825</span>&#160;<span class="keyword">class </span>State : <span class="keyword">public</span> <a class="code" href="struct_lode_p_n_g_state.html">LodePNGState</a></div>
+<div class="line"><a name="l00826"></a><span class="lineno">  826</span>&#160;{</div>
+<div class="line"><a name="l00827"></a><span class="lineno">  827</span>&#160;  <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00828"></a><span class="lineno">  828</span>&#160;    State();</div>
+<div class="line"><a name="l00829"></a><span class="lineno">  829</span>&#160;    State(<span class="keyword">const</span> State&amp; other);</div>
+<div class="line"><a name="l00830"></a><span class="lineno">  830</span>&#160;    <span class="keyword">virtual</span> ~State();</div>
+<div class="line"><a name="l00831"></a><span class="lineno">  831</span>&#160;    State&amp; operator=(<span class="keyword">const</span> State&amp; other);</div>
+<div class="line"><a name="l00832"></a><span class="lineno">  832</span>&#160;};</div>
+<div class="line"><a name="l00833"></a><span class="lineno">  833</span>&#160; </div>
+<div class="line"><a name="l00834"></a><span class="lineno">  834</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00835"></a><span class="lineno">  835</span>&#160;<span class="comment">//Same as other lodepng::decode, but using a State for more settings and information.</span></div>
+<div class="line"><a name="l00836"></a><span class="lineno">  836</span>&#160;<span class="keywordtype">unsigned</span> decode(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out, <span class="keywordtype">unsigned</span>&amp; w, <span class="keywordtype">unsigned</span>&amp; h,</div>
+<div class="line"><a name="l00837"></a><span class="lineno">  837</span>&#160;                State&amp; state,</div>
+<div class="line"><a name="l00838"></a><span class="lineno">  838</span>&#160;                <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize);</div>
+<div class="line"><a name="l00839"></a><span class="lineno">  839</span>&#160;<span class="keywordtype">unsigned</span> decode(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out, <span class="keywordtype">unsigned</span>&amp; w, <span class="keywordtype">unsigned</span>&amp; h,</div>
+<div class="line"><a name="l00840"></a><span class="lineno">  840</span>&#160;                State&amp; state,</div>
+<div class="line"><a name="l00841"></a><span class="lineno">  841</span>&#160;                <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; in);</div>
+<div class="line"><a name="l00842"></a><span class="lineno">  842</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_DECODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00843"></a><span class="lineno">  843</span>&#160; </div>
+<div class="line"><a name="l00844"></a><span class="lineno">  844</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00845"></a><span class="lineno">  845</span>&#160;<span class="comment">//Same as other lodepng::encode, but using a State for more settings and information.</span></div>
+<div class="line"><a name="l00846"></a><span class="lineno">  846</span>&#160;<span class="keywordtype">unsigned</span> encode(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out,</div>
+<div class="line"><a name="l00847"></a><span class="lineno">  847</span>&#160;                <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00848"></a><span class="lineno">  848</span>&#160;                State&amp; state);</div>
+<div class="line"><a name="l00849"></a><span class="lineno">  849</span>&#160;<span class="keywordtype">unsigned</span> encode(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out,</div>
+<div class="line"><a name="l00850"></a><span class="lineno">  850</span>&#160;                <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; in, <span class="keywordtype">unsigned</span> w, <span class="keywordtype">unsigned</span> h,</div>
+<div class="line"><a name="l00851"></a><span class="lineno">  851</span>&#160;                State&amp; state);</div>
+<div class="line"><a name="l00852"></a><span class="lineno">  852</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_ENCODER*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00853"></a><span class="lineno">  853</span>&#160; </div>
+<div class="line"><a name="l00854"></a><span class="lineno">  854</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00855"></a><span class="lineno">  855</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00856"></a><span class="lineno">  856</span>&#160;<span class="comment">Load a file from disk into an std::vector. If the vector is empty, then either</span></div>
+<div class="line"><a name="l00857"></a><span class="lineno">  857</span>&#160;<span class="comment">the file doesn&#39;t exist or is an empty file.</span></div>
+<div class="line"><a name="l00858"></a><span class="lineno">  858</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00859"></a><span class="lineno">  859</span>&#160;<span class="keywordtype">void</span> load_file(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; buffer, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>&amp; filename);</div>
+<div class="line"><a name="l00860"></a><span class="lineno">  860</span>&#160; </div>
+<div class="line"><a name="l00861"></a><span class="lineno">  861</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00862"></a><span class="lineno">  862</span>&#160;<span class="comment">Save the binary data in an std::vector to a file on disk. The file is overwritten</span></div>
+<div class="line"><a name="l00863"></a><span class="lineno">  863</span>&#160;<span class="comment">without warning.</span></div>
+<div class="line"><a name="l00864"></a><span class="lineno">  864</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00865"></a><span class="lineno">  865</span>&#160;<span class="keywordtype">void</span> save_file(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; buffer, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>&amp; filename);</div>
+<div class="line"><a name="l00866"></a><span class="lineno">  866</span>&#160;<span class="preprocessor">#endif //LODEPNG_COMPILE_DISK</span></div>
+<div class="line"><a name="l00867"></a><span class="lineno">  867</span>&#160;<span class="preprocessor">#endif //LODEPNG_COMPILE_PNG</span></div>
+<div class="line"><a name="l00868"></a><span class="lineno">  868</span>&#160; </div>
+<div class="line"><a name="l00869"></a><span class="lineno">  869</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ZLIB</span></div>
+<div class="line"><a name="l00870"></a><span class="lineno">  870</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00871"></a><span class="lineno">  871</span>&#160;<span class="comment">//Zlib-decompress an unsigned char buffer</span></div>
+<div class="line"><a name="l00872"></a><span class="lineno">  872</span>&#160;<span class="keywordtype">unsigned</span> decompress(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out, <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize,</div>
+<div class="line"><a name="l00873"></a><span class="lineno">  873</span>&#160;                    <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>&amp; settings = lodepng_default_decompress_settings);</div>
+<div class="line"><a name="l00874"></a><span class="lineno">  874</span>&#160; </div>
+<div class="line"><a name="l00875"></a><span class="lineno">  875</span>&#160;<span class="comment">//Zlib-decompress an std::vector</span></div>
+<div class="line"><a name="l00876"></a><span class="lineno">  876</span>&#160;<span class="keywordtype">unsigned</span> decompress(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; in,</div>
+<div class="line"><a name="l00877"></a><span class="lineno">  877</span>&#160;                    <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>&amp; settings = lodepng_default_decompress_settings);</div>
+<div class="line"><a name="l00878"></a><span class="lineno">  878</span>&#160;<span class="preprocessor">#endif //LODEPNG_COMPILE_DECODER</span></div>
+<div class="line"><a name="l00879"></a><span class="lineno">  879</span>&#160; </div>
+<div class="line"><a name="l00880"></a><span class="lineno">  880</span>&#160;<span class="preprocessor">#ifdef LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00881"></a><span class="lineno">  881</span>&#160;<span class="comment">//Zlib-compress an unsigned char buffer</span></div>
+<div class="line"><a name="l00882"></a><span class="lineno">  882</span>&#160;<span class="keywordtype">unsigned</span> compress(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out, <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* in, <span class="keywordtype">size_t</span> insize,</div>
+<div class="line"><a name="l00883"></a><span class="lineno">  883</span>&#160;                  <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>&amp; settings = lodepng_default_compress_settings);</div>
+<div class="line"><a name="l00884"></a><span class="lineno">  884</span>&#160; </div>
+<div class="line"><a name="l00885"></a><span class="lineno">  885</span>&#160;<span class="comment">//Zlib-compress an std::vector</span></div>
+<div class="line"><a name="l00886"></a><span class="lineno">  886</span>&#160;<span class="keywordtype">unsigned</span> compress(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; out, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;unsigned char&gt;</a>&amp; in,</div>
+<div class="line"><a name="l00887"></a><span class="lineno">  887</span>&#160;                  <span class="keyword">const</span> <a class="code" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>&amp; settings = lodepng_default_compress_settings);</div>
+<div class="line"><a name="l00888"></a><span class="lineno">  888</span>&#160;<span class="preprocessor">#endif //LODEPNG_COMPILE_ENCODER</span></div>
+<div class="line"><a name="l00889"></a><span class="lineno">  889</span>&#160;<span class="preprocessor">#endif //LODEPNG_COMPILE_ZLIB</span></div>
+<div class="line"><a name="l00890"></a><span class="lineno">  890</span>&#160;} <span class="comment">//namespace lodepng</span></div>
+<div class="line"><a name="l00891"></a><span class="lineno">  891</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_COMPILE_CPP*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00892"></a><span class="lineno">  892</span>&#160; </div>
+<div class="line"><a name="l00893"></a><span class="lineno">  893</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00894"></a><span class="lineno">  894</span>&#160;<span class="comment">TODO:</span></div>
+<div class="line"><a name="l00895"></a><span class="lineno">  895</span>&#160;<span class="comment">[.] test if there are no memory leaks or security exploits - done a lot but needs to be checked often</span></div>
+<div class="line"><a name="l00896"></a><span class="lineno">  896</span>&#160;<span class="comment">[.] check compatibility with vareous compilers  - done but needs to be redone for every newer version</span></div>
+<div class="line"><a name="l00897"></a><span class="lineno">  897</span>&#160;<span class="comment">[X] converting color to 16-bit per channel types</span></div>
+<div class="line"><a name="l00898"></a><span class="lineno">  898</span>&#160;<span class="comment">[ ] read all public PNG chunk types (but never let the color profile and gamma ones touch RGB values)</span></div>
+<div class="line"><a name="l00899"></a><span class="lineno">  899</span>&#160;<span class="comment">[ ] make sure encoder generates no chunks with size &gt; (2^31)-1</span></div>
+<div class="line"><a name="l00900"></a><span class="lineno">  900</span>&#160;<span class="comment">[ ] partial decoding (stream processing)</span></div>
+<div class="line"><a name="l00901"></a><span class="lineno">  901</span>&#160;<span class="comment">[X] let the &quot;isFullyOpaque&quot; function check color keys and transparent palettes too</span></div>
+<div class="line"><a name="l00902"></a><span class="lineno">  902</span>&#160;<span class="comment">[X] better name for the variables &quot;codes&quot;, &quot;codesD&quot;, &quot;codelengthcodes&quot;, &quot;clcl&quot; and &quot;lldl&quot;</span></div>
+<div class="line"><a name="l00903"></a><span class="lineno">  903</span>&#160;<span class="comment">[ ] don&#39;t stop decoding on errors like 69, 57, 58 (make warnings)</span></div>
+<div class="line"><a name="l00904"></a><span class="lineno">  904</span>&#160;<span class="comment">[ ] make option to choose if the raw image with non multiple of 8 bits per scanline should have padding bits or not</span></div>
+<div class="line"><a name="l00905"></a><span class="lineno">  905</span>&#160;<span class="comment">[ ] let the C++ wrapper catch exceptions coming from the standard library and return LodePNG error codes</span></div>
+<div class="line"><a name="l00906"></a><span class="lineno">  906</span>&#160;<span class="comment">*/</span></div>
+<div class="line"><a name="l00907"></a><span class="lineno">  907</span>&#160; </div>
+<div class="line"><a name="l00908"></a><span class="lineno">  908</span>&#160;<span class="preprocessor">#endif </span><span class="comment">/*LODEPNG_H inclusion guard*/</span><span class="preprocessor"></span></div>
+<div class="line"><a name="l00909"></a><span class="lineno">  909</span>&#160; </div>
+<div class="line"><a name="l00910"></a><span class="lineno">  910</span>&#160;<span class="comment">/*</span></div>
+<div class="line"><a name="l00911"></a><span class="lineno">  911</span>&#160;<span class="comment">LodePNG Documentation</span></div>
+<div class="line"><a name="l00912"></a><span class="lineno">  912</span>&#160;<span class="comment">---------------------</span></div>
+<div class="line"><a name="l00913"></a><span class="lineno">  913</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00914"></a><span class="lineno">  914</span>&#160;<span class="comment">0. table of contents</span></div>
+<div class="line"><a name="l00915"></a><span class="lineno">  915</span>&#160;<span class="comment">--------------------</span></div>
+<div class="line"><a name="l00916"></a><span class="lineno">  916</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00917"></a><span class="lineno">  917</span>&#160;<span class="comment">  1. about</span></div>
+<div class="line"><a name="l00918"></a><span class="lineno">  918</span>&#160;<span class="comment">   1.1. supported features</span></div>
+<div class="line"><a name="l00919"></a><span class="lineno">  919</span>&#160;<span class="comment">   1.2. features not supported</span></div>
+<div class="line"><a name="l00920"></a><span class="lineno">  920</span>&#160;<span class="comment">  2. C and C++ version</span></div>
+<div class="line"><a name="l00921"></a><span class="lineno">  921</span>&#160;<span class="comment">  3. security</span></div>
+<div class="line"><a name="l00922"></a><span class="lineno">  922</span>&#160;<span class="comment">  4. decoding</span></div>
+<div class="line"><a name="l00923"></a><span class="lineno">  923</span>&#160;<span class="comment">  5. encoding</span></div>
+<div class="line"><a name="l00924"></a><span class="lineno">  924</span>&#160;<span class="comment">  6. color conversions</span></div>
+<div class="line"><a name="l00925"></a><span class="lineno">  925</span>&#160;<span class="comment">    6.1. PNG color types</span></div>
+<div class="line"><a name="l00926"></a><span class="lineno">  926</span>&#160;<span class="comment">    6.2. color conversions</span></div>
+<div class="line"><a name="l00927"></a><span class="lineno">  927</span>&#160;<span class="comment">    6.3. padding bits</span></div>
+<div class="line"><a name="l00928"></a><span class="lineno">  928</span>&#160;<span class="comment">    6.4. A note about 16-bits per channel and endianness</span></div>
+<div class="line"><a name="l00929"></a><span class="lineno">  929</span>&#160;<span class="comment">  7. error values</span></div>
+<div class="line"><a name="l00930"></a><span class="lineno">  930</span>&#160;<span class="comment">  8. chunks and PNG editing</span></div>
+<div class="line"><a name="l00931"></a><span class="lineno">  931</span>&#160;<span class="comment">  9. compiler support</span></div>
+<div class="line"><a name="l00932"></a><span class="lineno">  932</span>&#160;<span class="comment">  10. examples</span></div>
+<div class="line"><a name="l00933"></a><span class="lineno">  933</span>&#160;<span class="comment">   10.1. decoder C++ example</span></div>
+<div class="line"><a name="l00934"></a><span class="lineno">  934</span>&#160;<span class="comment">   10.2. decoder C example</span></div>
+<div class="line"><a name="l00935"></a><span class="lineno">  935</span>&#160;<span class="comment">  11. changes</span></div>
+<div class="line"><a name="l00936"></a><span class="lineno">  936</span>&#160;<span class="comment">  12. contact information</span></div>
+<div class="line"><a name="l00937"></a><span class="lineno">  937</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00938"></a><span class="lineno">  938</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00939"></a><span class="lineno">  939</span>&#160;<span class="comment">1. about</span></div>
+<div class="line"><a name="l00940"></a><span class="lineno">  940</span>&#160;<span class="comment">--------</span></div>
+<div class="line"><a name="l00941"></a><span class="lineno">  941</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00942"></a><span class="lineno">  942</span>&#160;<span class="comment">PNG is a file format to store raster images losslessly with good compression,</span></div>
+<div class="line"><a name="l00943"></a><span class="lineno">  943</span>&#160;<span class="comment">supporting different color types and alpha channel.</span></div>
+<div class="line"><a name="l00944"></a><span class="lineno">  944</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00945"></a><span class="lineno">  945</span>&#160;<span class="comment">LodePNG is a PNG codec according to the Portable Network Graphics (PNG)</span></div>
+<div class="line"><a name="l00946"></a><span class="lineno">  946</span>&#160;<span class="comment">Specification (Second Edition) - W3C Recommendation 10 November 2003.</span></div>
+<div class="line"><a name="l00947"></a><span class="lineno">  947</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00948"></a><span class="lineno">  948</span>&#160;<span class="comment">The specifications used are:</span></div>
+<div class="line"><a name="l00949"></a><span class="lineno">  949</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00950"></a><span class="lineno">  950</span>&#160;<span class="comment">*) Portable Network Graphics (PNG) Specification (Second Edition):</span></div>
+<div class="line"><a name="l00951"></a><span class="lineno">  951</span>&#160;<span class="comment">     http://www.w3.org/TR/2003/REC-PNG-20031110</span></div>
+<div class="line"><a name="l00952"></a><span class="lineno">  952</span>&#160;<span class="comment">*) RFC 1950 ZLIB Compressed Data Format version 3.3:</span></div>
+<div class="line"><a name="l00953"></a><span class="lineno">  953</span>&#160;<span class="comment">     http://www.gzip.org/zlib/rfc-zlib.html</span></div>
+<div class="line"><a name="l00954"></a><span class="lineno">  954</span>&#160;<span class="comment">*) RFC 1951 DEFLATE Compressed Data Format Specification ver 1.3:</span></div>
+<div class="line"><a name="l00955"></a><span class="lineno">  955</span>&#160;<span class="comment">     http://www.gzip.org/zlib/rfc-deflate.html</span></div>
+<div class="line"><a name="l00956"></a><span class="lineno">  956</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00957"></a><span class="lineno">  957</span>&#160;<span class="comment">The most recent version of LodePNG can currently be found at</span></div>
+<div class="line"><a name="l00958"></a><span class="lineno">  958</span>&#160;<span class="comment">http://lodev.org/lodepng/</span></div>
+<div class="line"><a name="l00959"></a><span class="lineno">  959</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00960"></a><span class="lineno">  960</span>&#160;<span class="comment">LodePNG works both in C (ISO C90) and C++, with a C++ wrapper that adds</span></div>
+<div class="line"><a name="l00961"></a><span class="lineno">  961</span>&#160;<span class="comment">extra functionality.</span></div>
+<div class="line"><a name="l00962"></a><span class="lineno">  962</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00963"></a><span class="lineno">  963</span>&#160;<span class="comment">LodePNG exists out of two files:</span></div>
+<div class="line"><a name="l00964"></a><span class="lineno">  964</span>&#160;<span class="comment">-lodepng.h: the header file for both C and C++</span></div>
+<div class="line"><a name="l00965"></a><span class="lineno">  965</span>&#160;<span class="comment">-lodepng.c(pp): give it the name lodepng.c or lodepng.cpp (or .cc) depending on your usage</span></div>
+<div class="line"><a name="l00966"></a><span class="lineno">  966</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00967"></a><span class="lineno">  967</span>&#160;<span class="comment">If you want to start using LodePNG right away without reading this doc, get the</span></div>
+<div class="line"><a name="l00968"></a><span class="lineno">  968</span>&#160;<span class="comment">examples from the LodePNG website to see how to use it in code, or check the</span></div>
+<div class="line"><a name="l00969"></a><span class="lineno">  969</span>&#160;<span class="comment">smaller examples in chapter 13 here.</span></div>
+<div class="line"><a name="l00970"></a><span class="lineno">  970</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00971"></a><span class="lineno">  971</span>&#160;<span class="comment">LodePNG is simple but only supports the basic requirements. To achieve</span></div>
+<div class="line"><a name="l00972"></a><span class="lineno">  972</span>&#160;<span class="comment">simplicity, the following design choices were made: There are no dependencies</span></div>
+<div class="line"><a name="l00973"></a><span class="lineno">  973</span>&#160;<span class="comment">on any external library. There are functions to decode and encode a PNG with</span></div>
+<div class="line"><a name="l00974"></a><span class="lineno">  974</span>&#160;<span class="comment">a single function call, and extended versions of these functions taking a</span></div>
+<div class="line"><a name="l00975"></a><span class="lineno">  975</span>&#160;<span class="comment">LodePNGState struct allowing to specify or get more information. By default</span></div>
+<div class="line"><a name="l00976"></a><span class="lineno">  976</span>&#160;<span class="comment">the colors of the raw image are always RGB or RGBA, no matter what color type</span></div>
+<div class="line"><a name="l00977"></a><span class="lineno">  977</span>&#160;<span class="comment">the PNG file uses. To read and write files, there are simple functions to</span></div>
+<div class="line"><a name="l00978"></a><span class="lineno">  978</span>&#160;<span class="comment">convert the files to/from buffers in memory.</span></div>
+<div class="line"><a name="l00979"></a><span class="lineno">  979</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00980"></a><span class="lineno">  980</span>&#160;<span class="comment">This all makes LodePNG suitable for loading textures in games, demos and small</span></div>
+<div class="line"><a name="l00981"></a><span class="lineno">  981</span>&#160;<span class="comment">programs, ... It&#39;s less suitable for full fledged image editors, loading PNGs</span></div>
+<div class="line"><a name="l00982"></a><span class="lineno">  982</span>&#160;<span class="comment">over network (it requires all the image data to be available before decoding can</span></div>
+<div class="line"><a name="l00983"></a><span class="lineno">  983</span>&#160;<span class="comment">begin), life-critical systems, ...</span></div>
+<div class="line"><a name="l00984"></a><span class="lineno">  984</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00985"></a><span class="lineno">  985</span>&#160;<span class="comment">1.1. supported features</span></div>
+<div class="line"><a name="l00986"></a><span class="lineno">  986</span>&#160;<span class="comment">-----------------------</span></div>
+<div class="line"><a name="l00987"></a><span class="lineno">  987</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00988"></a><span class="lineno">  988</span>&#160;<span class="comment">The following features are supported by the decoder:</span></div>
+<div class="line"><a name="l00989"></a><span class="lineno">  989</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00990"></a><span class="lineno">  990</span>&#160;<span class="comment">*) decoding of PNGs with any color type, bit depth and interlace mode, to a 24- or 32-bit color raw image,</span></div>
+<div class="line"><a name="l00991"></a><span class="lineno">  991</span>&#160;<span class="comment">   or the same color type as the PNG</span></div>
+<div class="line"><a name="l00992"></a><span class="lineno">  992</span>&#160;<span class="comment">*) encoding of PNGs, from any raw image to 24- or 32-bit color, or the same color type as the raw image</span></div>
+<div class="line"><a name="l00993"></a><span class="lineno">  993</span>&#160;<span class="comment">*) Adam7 interlace and deinterlace for any color type</span></div>
+<div class="line"><a name="l00994"></a><span class="lineno">  994</span>&#160;<span class="comment">*) loading the image from harddisk or decoding it from a buffer from other sources than harddisk</span></div>
+<div class="line"><a name="l00995"></a><span class="lineno">  995</span>&#160;<span class="comment">*) support for alpha channels, including RGBA color model, translucent palettes and color keying</span></div>
+<div class="line"><a name="l00996"></a><span class="lineno">  996</span>&#160;<span class="comment">*) zlib decompression (inflate)</span></div>
+<div class="line"><a name="l00997"></a><span class="lineno">  997</span>&#160;<span class="comment">*) zlib compression (deflate)</span></div>
+<div class="line"><a name="l00998"></a><span class="lineno">  998</span>&#160;<span class="comment">*) CRC32 and ADLER32 checksums</span></div>
+<div class="line"><a name="l00999"></a><span class="lineno">  999</span>&#160;<span class="comment">*) handling of unknown chunks, allowing making a PNG editor that stores custom and unknown chunks.</span></div>
+<div class="line"><a name="l01000"></a><span class="lineno"> 1000</span>&#160;<span class="comment">*) the following chunks are supported (generated/interpreted) by both encoder and decoder:</span></div>
+<div class="line"><a name="l01001"></a><span class="lineno"> 1001</span>&#160;<span class="comment">    IHDR: header information</span></div>
+<div class="line"><a name="l01002"></a><span class="lineno"> 1002</span>&#160;<span class="comment">    PLTE: color palette</span></div>
+<div class="line"><a name="l01003"></a><span class="lineno"> 1003</span>&#160;<span class="comment">    IDAT: pixel data</span></div>
+<div class="line"><a name="l01004"></a><span class="lineno"> 1004</span>&#160;<span class="comment">    IEND: the final chunk</span></div>
+<div class="line"><a name="l01005"></a><span class="lineno"> 1005</span>&#160;<span class="comment">    tRNS: transparency for palettized images</span></div>
+<div class="line"><a name="l01006"></a><span class="lineno"> 1006</span>&#160;<span class="comment">    tEXt: textual information</span></div>
+<div class="line"><a name="l01007"></a><span class="lineno"> 1007</span>&#160;<span class="comment">    zTXt: compressed textual information</span></div>
+<div class="line"><a name="l01008"></a><span class="lineno"> 1008</span>&#160;<span class="comment">    iTXt: international textual information</span></div>
+<div class="line"><a name="l01009"></a><span class="lineno"> 1009</span>&#160;<span class="comment">    bKGD: suggested background color</span></div>
+<div class="line"><a name="l01010"></a><span class="lineno"> 1010</span>&#160;<span class="comment">    pHYs: physical dimensions</span></div>
+<div class="line"><a name="l01011"></a><span class="lineno"> 1011</span>&#160;<span class="comment">    tIME: modification time</span></div>
+<div class="line"><a name="l01012"></a><span class="lineno"> 1012</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01013"></a><span class="lineno"> 1013</span>&#160;<span class="comment">1.2. features not supported</span></div>
+<div class="line"><a name="l01014"></a><span class="lineno"> 1014</span>&#160;<span class="comment">---------------------------</span></div>
+<div class="line"><a name="l01015"></a><span class="lineno"> 1015</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01016"></a><span class="lineno"> 1016</span>&#160;<span class="comment">The following features are _not_ supported:</span></div>
+<div class="line"><a name="l01017"></a><span class="lineno"> 1017</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01018"></a><span class="lineno"> 1018</span>&#160;<span class="comment">*) some features needed to make a conformant PNG-Editor might be still missing.</span></div>
+<div class="line"><a name="l01019"></a><span class="lineno"> 1019</span>&#160;<span class="comment">*) partial loading/stream processing. All data must be available and is processed in one call.</span></div>
+<div class="line"><a name="l01020"></a><span class="lineno"> 1020</span>&#160;<span class="comment">*) The following public chunks are not supported but treated as unknown chunks by LodePNG</span></div>
+<div class="line"><a name="l01021"></a><span class="lineno"> 1021</span>&#160;<span class="comment">    cHRM, gAMA, iCCP, sRGB, sBIT, hIST, sPLT</span></div>
+<div class="line"><a name="l01022"></a><span class="lineno"> 1022</span>&#160;<span class="comment">   Some of these are not supported on purpose: LodePNG wants to provide the RGB values</span></div>
+<div class="line"><a name="l01023"></a><span class="lineno"> 1023</span>&#160;<span class="comment">   stored in the pixels, not values modified by system dependent gamma or color models.</span></div>
+<div class="line"><a name="l01024"></a><span class="lineno"> 1024</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01025"></a><span class="lineno"> 1025</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01026"></a><span class="lineno"> 1026</span>&#160;<span class="comment">2. C and C++ version</span></div>
+<div class="line"><a name="l01027"></a><span class="lineno"> 1027</span>&#160;<span class="comment">--------------------</span></div>
+<div class="line"><a name="l01028"></a><span class="lineno"> 1028</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01029"></a><span class="lineno"> 1029</span>&#160;<span class="comment">The C version uses buffers allocated with alloc that you need to free()</span></div>
+<div class="line"><a name="l01030"></a><span class="lineno"> 1030</span>&#160;<span class="comment">yourself. You need to use init and cleanup functions for each struct whenever</span></div>
+<div class="line"><a name="l01031"></a><span class="lineno"> 1031</span>&#160;<span class="comment">using a struct from the C version to avoid exploits and memory leaks.</span></div>
+<div class="line"><a name="l01032"></a><span class="lineno"> 1032</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01033"></a><span class="lineno"> 1033</span>&#160;<span class="comment">The C++ version has extra functions with std::vectors in the interface and the</span></div>
+<div class="line"><a name="l01034"></a><span class="lineno"> 1034</span>&#160;<span class="comment">lodepng::State class which is a LodePNGState with constructor and destructor.</span></div>
+<div class="line"><a name="l01035"></a><span class="lineno"> 1035</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01036"></a><span class="lineno"> 1036</span>&#160;<span class="comment">These files work without modification for both C and C++ compilers because all</span></div>
+<div class="line"><a name="l01037"></a><span class="lineno"> 1037</span>&#160;<span class="comment">the additional C++ code is in &quot;#ifdef __cplusplus&quot; blocks that make C-compilers</span></div>
+<div class="line"><a name="l01038"></a><span class="lineno"> 1038</span>&#160;<span class="comment">ignore it, and the C code is made to compile both with strict ISO C90 and C++.</span></div>
+<div class="line"><a name="l01039"></a><span class="lineno"> 1039</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01040"></a><span class="lineno"> 1040</span>&#160;<span class="comment">To use the C++ version, you need to rename the source file to lodepng.cpp</span></div>
+<div class="line"><a name="l01041"></a><span class="lineno"> 1041</span>&#160;<span class="comment">(instead of lodepng.c), and compile it with a C++ compiler.</span></div>
+<div class="line"><a name="l01042"></a><span class="lineno"> 1042</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01043"></a><span class="lineno"> 1043</span>&#160;<span class="comment">To use the C version, you need to rename the source file to lodepng.c (instead</span></div>
+<div class="line"><a name="l01044"></a><span class="lineno"> 1044</span>&#160;<span class="comment">of lodepng.cpp), and compile it with a C compiler.</span></div>
+<div class="line"><a name="l01045"></a><span class="lineno"> 1045</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01046"></a><span class="lineno"> 1046</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01047"></a><span class="lineno"> 1047</span>&#160;<span class="comment">3. Security</span></div>
+<div class="line"><a name="l01048"></a><span class="lineno"> 1048</span>&#160;<span class="comment">-----------</span></div>
+<div class="line"><a name="l01049"></a><span class="lineno"> 1049</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01050"></a><span class="lineno"> 1050</span>&#160;<span class="comment">Even if carefully designed, it&#39;s always possible that LodePNG contains possible</span></div>
+<div class="line"><a name="l01051"></a><span class="lineno"> 1051</span>&#160;<span class="comment">exploits. If you discover one, please let me know, and it will be fixed.</span></div>
+<div class="line"><a name="l01052"></a><span class="lineno"> 1052</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01053"></a><span class="lineno"> 1053</span>&#160;<span class="comment">When using LodePNG, care has to be taken with the C version of LodePNG, as well</span></div>
+<div class="line"><a name="l01054"></a><span class="lineno"> 1054</span>&#160;<span class="comment">as the C-style structs when working with C++. The following conventions are used</span></div>
+<div class="line"><a name="l01055"></a><span class="lineno"> 1055</span>&#160;<span class="comment">for all C-style structs:</span></div>
+<div class="line"><a name="l01056"></a><span class="lineno"> 1056</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01057"></a><span class="lineno"> 1057</span>&#160;<span class="comment">-if a struct has a corresponding init function, always call the init function when making a new one</span></div>
+<div class="line"><a name="l01058"></a><span class="lineno"> 1058</span>&#160;<span class="comment">-if a struct has a corresponding cleanup function, call it before the struct disappears to avoid memory leaks</span></div>
+<div class="line"><a name="l01059"></a><span class="lineno"> 1059</span>&#160;<span class="comment">-if a struct has a corresponding copy function, use the copy function instead of &quot;=&quot;.</span></div>
+<div class="line"><a name="l01060"></a><span class="lineno"> 1060</span>&#160;<span class="comment"> The destination must also be inited already.</span></div>
+<div class="line"><a name="l01061"></a><span class="lineno"> 1061</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01062"></a><span class="lineno"> 1062</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01063"></a><span class="lineno"> 1063</span>&#160;<span class="comment">4. Decoding</span></div>
+<div class="line"><a name="l01064"></a><span class="lineno"> 1064</span>&#160;<span class="comment">-----------</span></div>
+<div class="line"><a name="l01065"></a><span class="lineno"> 1065</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01066"></a><span class="lineno"> 1066</span>&#160;<span class="comment">Decoding converts a PNG compressed image to a raw pixel buffer.</span></div>
+<div class="line"><a name="l01067"></a><span class="lineno"> 1067</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01068"></a><span class="lineno"> 1068</span>&#160;<span class="comment">Most documentation on using the decoder is at its declarations in the header</span></div>
+<div class="line"><a name="l01069"></a><span class="lineno"> 1069</span>&#160;<span class="comment">above. For C, simple decoding can be done with functions such as</span></div>
+<div class="line"><a name="l01070"></a><span class="lineno"> 1070</span>&#160;<span class="comment">lodepng_decode32, and more advanced decoding can be done with the struct</span></div>
+<div class="line"><a name="l01071"></a><span class="lineno"> 1071</span>&#160;<span class="comment">LodePNGState and lodepng_decode. For C++, all decoding can be done with the</span></div>
+<div class="line"><a name="l01072"></a><span class="lineno"> 1072</span>&#160;<span class="comment">various lodepng::decode functions, and lodepng::State can be used for advanced</span></div>
+<div class="line"><a name="l01073"></a><span class="lineno"> 1073</span>&#160;<span class="comment">features.</span></div>
+<div class="line"><a name="l01074"></a><span class="lineno"> 1074</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01075"></a><span class="lineno"> 1075</span>&#160;<span class="comment">When using the LodePNGState, it uses the following fields for decoding:</span></div>
+<div class="line"><a name="l01076"></a><span class="lineno"> 1076</span>&#160;<span class="comment">*) LodePNGInfo info_png: it stores extra information about the PNG (the input) in here</span></div>
+<div class="line"><a name="l01077"></a><span class="lineno"> 1077</span>&#160;<span class="comment">*) LodePNGColorMode info_raw: here you can say what color mode of the raw image (the output) you want to get</span></div>
+<div class="line"><a name="l01078"></a><span class="lineno"> 1078</span>&#160;<span class="comment">*) LodePNGDecoderSettings decoder: you can specify a few extra settings for the decoder to use</span></div>
+<div class="line"><a name="l01079"></a><span class="lineno"> 1079</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01080"></a><span class="lineno"> 1080</span>&#160;<span class="comment">LodePNGInfo info_png</span></div>
+<div class="line"><a name="l01081"></a><span class="lineno"> 1081</span>&#160;<span class="comment">--------------------</span></div>
+<div class="line"><a name="l01082"></a><span class="lineno"> 1082</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01083"></a><span class="lineno"> 1083</span>&#160;<span class="comment">After decoding, this contains extra information of the PNG image, except the actual</span></div>
+<div class="line"><a name="l01084"></a><span class="lineno"> 1084</span>&#160;<span class="comment">pixels, width and height because these are already gotten directly from the decoder</span></div>
+<div class="line"><a name="l01085"></a><span class="lineno"> 1085</span>&#160;<span class="comment">functions.</span></div>
+<div class="line"><a name="l01086"></a><span class="lineno"> 1086</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01087"></a><span class="lineno"> 1087</span>&#160;<span class="comment">It contains for example the original color type of the PNG image, text comments,</span></div>
+<div class="line"><a name="l01088"></a><span class="lineno"> 1088</span>&#160;<span class="comment">suggested background color, etc... More details about the LodePNGInfo struct are</span></div>
+<div class="line"><a name="l01089"></a><span class="lineno"> 1089</span>&#160;<span class="comment">at its declaration documentation.</span></div>
+<div class="line"><a name="l01090"></a><span class="lineno"> 1090</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01091"></a><span class="lineno"> 1091</span>&#160;<span class="comment">LodePNGColorMode info_raw</span></div>
+<div class="line"><a name="l01092"></a><span class="lineno"> 1092</span>&#160;<span class="comment">-------------------------</span></div>
+<div class="line"><a name="l01093"></a><span class="lineno"> 1093</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01094"></a><span class="lineno"> 1094</span>&#160;<span class="comment">When decoding, here you can specify which color type you want</span></div>
+<div class="line"><a name="l01095"></a><span class="lineno"> 1095</span>&#160;<span class="comment">the resulting raw image to be. If this is different from the colortype of the</span></div>
+<div class="line"><a name="l01096"></a><span class="lineno"> 1096</span>&#160;<span class="comment">PNG, then the decoder will automatically convert the result. This conversion</span></div>
+<div class="line"><a name="l01097"></a><span class="lineno"> 1097</span>&#160;<span class="comment">always works, except if you want it to convert a color PNG to greyscale or to</span></div>
+<div class="line"><a name="l01098"></a><span class="lineno"> 1098</span>&#160;<span class="comment">a palette with missing colors.</span></div>
+<div class="line"><a name="l01099"></a><span class="lineno"> 1099</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01100"></a><span class="lineno"> 1100</span>&#160;<span class="comment">By default, 32-bit color is used for the result.</span></div>
+<div class="line"><a name="l01101"></a><span class="lineno"> 1101</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01102"></a><span class="lineno"> 1102</span>&#160;<span class="comment">LodePNGDecoderSettings decoder</span></div>
+<div class="line"><a name="l01103"></a><span class="lineno"> 1103</span>&#160;<span class="comment">------------------------------</span></div>
+<div class="line"><a name="l01104"></a><span class="lineno"> 1104</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01105"></a><span class="lineno"> 1105</span>&#160;<span class="comment">The settings can be used to ignore the errors created by invalid CRC and Adler32</span></div>
+<div class="line"><a name="l01106"></a><span class="lineno"> 1106</span>&#160;<span class="comment">chunks, and to disable the decoding of tEXt chunks.</span></div>
+<div class="line"><a name="l01107"></a><span class="lineno"> 1107</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01108"></a><span class="lineno"> 1108</span>&#160;<span class="comment">There&#39;s also a setting color_convert, true by default. If false, no conversion</span></div>
+<div class="line"><a name="l01109"></a><span class="lineno"> 1109</span>&#160;<span class="comment">is done, the resulting data will be as it was in the PNG (after decompression)</span></div>
+<div class="line"><a name="l01110"></a><span class="lineno"> 1110</span>&#160;<span class="comment">and you&#39;ll have to puzzle the colors of the pixels together yourself using the</span></div>
+<div class="line"><a name="l01111"></a><span class="lineno"> 1111</span>&#160;<span class="comment">color type information in the LodePNGInfo.</span></div>
+<div class="line"><a name="l01112"></a><span class="lineno"> 1112</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01113"></a><span class="lineno"> 1113</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01114"></a><span class="lineno"> 1114</span>&#160;<span class="comment">5. Encoding</span></div>
+<div class="line"><a name="l01115"></a><span class="lineno"> 1115</span>&#160;<span class="comment">-----------</span></div>
+<div class="line"><a name="l01116"></a><span class="lineno"> 1116</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01117"></a><span class="lineno"> 1117</span>&#160;<span class="comment">Encoding converts a raw pixel buffer to a PNG compressed image.</span></div>
+<div class="line"><a name="l01118"></a><span class="lineno"> 1118</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01119"></a><span class="lineno"> 1119</span>&#160;<span class="comment">Most documentation on using the encoder is at its declarations in the header</span></div>
+<div class="line"><a name="l01120"></a><span class="lineno"> 1120</span>&#160;<span class="comment">above. For C, simple encoding can be done with functions such as</span></div>
+<div class="line"><a name="l01121"></a><span class="lineno"> 1121</span>&#160;<span class="comment">lodepng_encode32, and more advanced decoding can be done with the struct</span></div>
+<div class="line"><a name="l01122"></a><span class="lineno"> 1122</span>&#160;<span class="comment">LodePNGState and lodepng_encode. For C++, all encoding can be done with the</span></div>
+<div class="line"><a name="l01123"></a><span class="lineno"> 1123</span>&#160;<span class="comment">various lodepng::encode functions, and lodepng::State can be used for advanced</span></div>
+<div class="line"><a name="l01124"></a><span class="lineno"> 1124</span>&#160;<span class="comment">features.</span></div>
+<div class="line"><a name="l01125"></a><span class="lineno"> 1125</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01126"></a><span class="lineno"> 1126</span>&#160;<span class="comment">Like the decoder, the encoder can also give errors. However it gives less errors</span></div>
+<div class="line"><a name="l01127"></a><span class="lineno"> 1127</span>&#160;<span class="comment">since the encoder input is trusted, the decoder input (a PNG image that could</span></div>
+<div class="line"><a name="l01128"></a><span class="lineno"> 1128</span>&#160;<span class="comment">be forged by anyone) is not trusted.</span></div>
+<div class="line"><a name="l01129"></a><span class="lineno"> 1129</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01130"></a><span class="lineno"> 1130</span>&#160;<span class="comment">When using the LodePNGState, it uses the following fields for encoding:</span></div>
+<div class="line"><a name="l01131"></a><span class="lineno"> 1131</span>&#160;<span class="comment">*) LodePNGInfo info_png: here you specify how you want the PNG (the output) to be.</span></div>
+<div class="line"><a name="l01132"></a><span class="lineno"> 1132</span>&#160;<span class="comment">*) LodePNGColorMode info_raw: here you say what color type of the raw image (the input) has</span></div>
+<div class="line"><a name="l01133"></a><span class="lineno"> 1133</span>&#160;<span class="comment">*) LodePNGEncoderSettings encoder: you can specify a few settings for the encoder to use</span></div>
+<div class="line"><a name="l01134"></a><span class="lineno"> 1134</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01135"></a><span class="lineno"> 1135</span>&#160;<span class="comment">LodePNGInfo info_png</span></div>
+<div class="line"><a name="l01136"></a><span class="lineno"> 1136</span>&#160;<span class="comment">--------------------</span></div>
+<div class="line"><a name="l01137"></a><span class="lineno"> 1137</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01138"></a><span class="lineno"> 1138</span>&#160;<span class="comment">When encoding, you use this the opposite way as when decoding: for encoding,</span></div>
+<div class="line"><a name="l01139"></a><span class="lineno"> 1139</span>&#160;<span class="comment">you fill in the values you want the PNG to have before encoding. By default it&#39;s</span></div>
+<div class="line"><a name="l01140"></a><span class="lineno"> 1140</span>&#160;<span class="comment">not needed to specify a color type for the PNG since it&#39;s automatically chosen,</span></div>
+<div class="line"><a name="l01141"></a><span class="lineno"> 1141</span>&#160;<span class="comment">but it&#39;s possible to choose it yourself given the right settings.</span></div>
+<div class="line"><a name="l01142"></a><span class="lineno"> 1142</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01143"></a><span class="lineno"> 1143</span>&#160;<span class="comment">The encoder will not always exactly match the LodePNGInfo struct you give,</span></div>
+<div class="line"><a name="l01144"></a><span class="lineno"> 1144</span>&#160;<span class="comment">it tries as close as possible. Some things are ignored by the encoder. The</span></div>
+<div class="line"><a name="l01145"></a><span class="lineno"> 1145</span>&#160;<span class="comment">encoder uses, for example, the following settings from it when applicable:</span></div>
+<div class="line"><a name="l01146"></a><span class="lineno"> 1146</span>&#160;<span class="comment">colortype and bitdepth, text chunks, time chunk, the color key, the palette, the</span></div>
+<div class="line"><a name="l01147"></a><span class="lineno"> 1147</span>&#160;<span class="comment">background color, the interlace method, unknown chunks, ...</span></div>
+<div class="line"><a name="l01148"></a><span class="lineno"> 1148</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01149"></a><span class="lineno"> 1149</span>&#160;<span class="comment">When encoding to a PNG with colortype 3, the encoder will generate a PLTE chunk.</span></div>
+<div class="line"><a name="l01150"></a><span class="lineno"> 1150</span>&#160;<span class="comment">If the palette contains any colors for which the alpha channel is not 255 (so</span></div>
+<div class="line"><a name="l01151"></a><span class="lineno"> 1151</span>&#160;<span class="comment">there are translucent colors in the palette), it&#39;ll add a tRNS chunk.</span></div>
+<div class="line"><a name="l01152"></a><span class="lineno"> 1152</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01153"></a><span class="lineno"> 1153</span>&#160;<span class="comment">LodePNGColorMode info_raw</span></div>
+<div class="line"><a name="l01154"></a><span class="lineno"> 1154</span>&#160;<span class="comment">-------------------------</span></div>
+<div class="line"><a name="l01155"></a><span class="lineno"> 1155</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01156"></a><span class="lineno"> 1156</span>&#160;<span class="comment">You specify the color type of the raw image that you give to the input here,</span></div>
+<div class="line"><a name="l01157"></a><span class="lineno"> 1157</span>&#160;<span class="comment">including a possible transparent color key and palette you happen to be using in</span></div>
+<div class="line"><a name="l01158"></a><span class="lineno"> 1158</span>&#160;<span class="comment">your raw image data.</span></div>
+<div class="line"><a name="l01159"></a><span class="lineno"> 1159</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01160"></a><span class="lineno"> 1160</span>&#160;<span class="comment">By default, 32-bit color is assumed, meaning your input has to be in RGBA</span></div>
+<div class="line"><a name="l01161"></a><span class="lineno"> 1161</span>&#160;<span class="comment">format with 4 bytes (unsigned chars) per pixel.</span></div>
+<div class="line"><a name="l01162"></a><span class="lineno"> 1162</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01163"></a><span class="lineno"> 1163</span>&#160;<span class="comment">LodePNGEncoderSettings encoder</span></div>
+<div class="line"><a name="l01164"></a><span class="lineno"> 1164</span>&#160;<span class="comment">------------------------------</span></div>
+<div class="line"><a name="l01165"></a><span class="lineno"> 1165</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01166"></a><span class="lineno"> 1166</span>&#160;<span class="comment">The following settings are supported (some are in sub-structs):</span></div>
+<div class="line"><a name="l01167"></a><span class="lineno"> 1167</span>&#160;<span class="comment">*) auto_convert: when this option is enabled, the encoder will</span></div>
+<div class="line"><a name="l01168"></a><span class="lineno"> 1168</span>&#160;<span class="comment">automatically choose the smallest possible color mode (including color key) that</span></div>
+<div class="line"><a name="l01169"></a><span class="lineno"> 1169</span>&#160;<span class="comment">can encode the colors of all pixels without information loss.</span></div>
+<div class="line"><a name="l01170"></a><span class="lineno"> 1170</span>&#160;<span class="comment">*) btype: the block type for LZ77. 0 = uncompressed, 1 = fixed huffman tree,</span></div>
+<div class="line"><a name="l01171"></a><span class="lineno"> 1171</span>&#160;<span class="comment">   2 = dynamic huffman tree (best compression). Should be 2 for proper</span></div>
+<div class="line"><a name="l01172"></a><span class="lineno"> 1172</span>&#160;<span class="comment">   compression.</span></div>
+<div class="line"><a name="l01173"></a><span class="lineno"> 1173</span>&#160;<span class="comment">*) use_lz77: whether or not to use LZ77 for compressed block types. Should be</span></div>
+<div class="line"><a name="l01174"></a><span class="lineno"> 1174</span>&#160;<span class="comment">   true for proper compression.</span></div>
+<div class="line"><a name="l01175"></a><span class="lineno"> 1175</span>&#160;<span class="comment">*) windowsize: the window size used by the LZ77 encoder (1 - 32768). Has value</span></div>
+<div class="line"><a name="l01176"></a><span class="lineno"> 1176</span>&#160;<span class="comment">   2048 by default, but can be set to 32768 for better, but slow, compression.</span></div>
+<div class="line"><a name="l01177"></a><span class="lineno"> 1177</span>&#160;<span class="comment">*) force_palette: if colortype is 2 or 6, you can make the encoder write a PLTE</span></div>
+<div class="line"><a name="l01178"></a><span class="lineno"> 1178</span>&#160;<span class="comment">   chunk if force_palette is true. This can used as suggested palette to convert</span></div>
+<div class="line"><a name="l01179"></a><span class="lineno"> 1179</span>&#160;<span class="comment">   to by viewers that don&#39;t support more than 256 colors (if those still exist)</span></div>
+<div class="line"><a name="l01180"></a><span class="lineno"> 1180</span>&#160;<span class="comment">*) add_id: add text chunk &quot;Encoder: LodePNG &lt;version&gt;&quot; to the image.</span></div>
+<div class="line"><a name="l01181"></a><span class="lineno"> 1181</span>&#160;<span class="comment">*) text_compression: default 1. If 1, it&#39;ll store texts as zTXt instead of tEXt chunks.</span></div>
+<div class="line"><a name="l01182"></a><span class="lineno"> 1182</span>&#160;<span class="comment">  zTXt chunks use zlib compression on the text. This gives a smaller result on</span></div>
+<div class="line"><a name="l01183"></a><span class="lineno"> 1183</span>&#160;<span class="comment">  large texts but a larger result on small texts (such as a single program name).</span></div>
+<div class="line"><a name="l01184"></a><span class="lineno"> 1184</span>&#160;<span class="comment">  It&#39;s all tEXt or all zTXt though, there&#39;s no separate setting per text yet.</span></div>
+<div class="line"><a name="l01185"></a><span class="lineno"> 1185</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01186"></a><span class="lineno"> 1186</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01187"></a><span class="lineno"> 1187</span>&#160;<span class="comment">6. color conversions</span></div>
+<div class="line"><a name="l01188"></a><span class="lineno"> 1188</span>&#160;<span class="comment">--------------------</span></div>
+<div class="line"><a name="l01189"></a><span class="lineno"> 1189</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01190"></a><span class="lineno"> 1190</span>&#160;<span class="comment">An important thing to note about LodePNG, is that the color type of the PNG, and</span></div>
+<div class="line"><a name="l01191"></a><span class="lineno"> 1191</span>&#160;<span class="comment">the color type of the raw image, are completely independent. By default, when</span></div>
+<div class="line"><a name="l01192"></a><span class="lineno"> 1192</span>&#160;<span class="comment">you decode a PNG, you get the result as a raw image in the color type you want,</span></div>
+<div class="line"><a name="l01193"></a><span class="lineno"> 1193</span>&#160;<span class="comment">no matter whether the PNG was encoded with a palette, greyscale or RGBA color.</span></div>
+<div class="line"><a name="l01194"></a><span class="lineno"> 1194</span>&#160;<span class="comment">And if you encode an image, by default LodePNG will automatically choose the PNG</span></div>
+<div class="line"><a name="l01195"></a><span class="lineno"> 1195</span>&#160;<span class="comment">color type that gives good compression based on the values of colors and amount</span></div>
+<div class="line"><a name="l01196"></a><span class="lineno"> 1196</span>&#160;<span class="comment">of colors in the image. It can be configured to let you control it instead as</span></div>
+<div class="line"><a name="l01197"></a><span class="lineno"> 1197</span>&#160;<span class="comment">well, though.</span></div>
+<div class="line"><a name="l01198"></a><span class="lineno"> 1198</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01199"></a><span class="lineno"> 1199</span>&#160;<span class="comment">To be able to do this, LodePNG does conversions from one color mode to another.</span></div>
+<div class="line"><a name="l01200"></a><span class="lineno"> 1200</span>&#160;<span class="comment">It can convert from almost any color type to any other color type, except the</span></div>
+<div class="line"><a name="l01201"></a><span class="lineno"> 1201</span>&#160;<span class="comment">following conversions: RGB to greyscale is not supported, and converting to a</span></div>
+<div class="line"><a name="l01202"></a><span class="lineno"> 1202</span>&#160;<span class="comment">palette when the palette doesn&#39;t have a required color is not supported. This is</span></div>
+<div class="line"><a name="l01203"></a><span class="lineno"> 1203</span>&#160;<span class="comment">not supported on purpose: this is information loss which requires a color</span></div>
+<div class="line"><a name="l01204"></a><span class="lineno"> 1204</span>&#160;<span class="comment">reduction algorithm that is beyong the scope of a PNG encoder (yes, RGB to grey</span></div>
+<div class="line"><a name="l01205"></a><span class="lineno"> 1205</span>&#160;<span class="comment">is easy, but there are multiple ways if you want to give some channels more</span></div>
+<div class="line"><a name="l01206"></a><span class="lineno"> 1206</span>&#160;<span class="comment">weight).</span></div>
+<div class="line"><a name="l01207"></a><span class="lineno"> 1207</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01208"></a><span class="lineno"> 1208</span>&#160;<span class="comment">By default, when decoding, you get the raw image in 32-bit RGBA or 24-bit RGB</span></div>
+<div class="line"><a name="l01209"></a><span class="lineno"> 1209</span>&#160;<span class="comment">color, no matter what color type the PNG has. And by default when encoding,</span></div>
+<div class="line"><a name="l01210"></a><span class="lineno"> 1210</span>&#160;<span class="comment">LodePNG automatically picks the best color model for the output PNG, and expects</span></div>
+<div class="line"><a name="l01211"></a><span class="lineno"> 1211</span>&#160;<span class="comment">the input image to be 32-bit RGBA or 24-bit RGB. So, unless you want to control</span></div>
+<div class="line"><a name="l01212"></a><span class="lineno"> 1212</span>&#160;<span class="comment">the color format of the images yourself, you can skip this chapter.</span></div>
+<div class="line"><a name="l01213"></a><span class="lineno"> 1213</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01214"></a><span class="lineno"> 1214</span>&#160;<span class="comment">6.1. PNG color types</span></div>
+<div class="line"><a name="l01215"></a><span class="lineno"> 1215</span>&#160;<span class="comment">--------------------</span></div>
+<div class="line"><a name="l01216"></a><span class="lineno"> 1216</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01217"></a><span class="lineno"> 1217</span>&#160;<span class="comment">A PNG image can have many color types, ranging from 1-bit color to 64-bit color,</span></div>
+<div class="line"><a name="l01218"></a><span class="lineno"> 1218</span>&#160;<span class="comment">as well as palettized color modes. After the zlib decompression and unfiltering</span></div>
+<div class="line"><a name="l01219"></a><span class="lineno"> 1219</span>&#160;<span class="comment">in the PNG image is done, the raw pixel data will have that color type and thus</span></div>
+<div class="line"><a name="l01220"></a><span class="lineno"> 1220</span>&#160;<span class="comment">a certain amount of bits per pixel. If you want the output raw image after</span></div>
+<div class="line"><a name="l01221"></a><span class="lineno"> 1221</span>&#160;<span class="comment">decoding to have another color type, a conversion is done by LodePNG.</span></div>
+<div class="line"><a name="l01222"></a><span class="lineno"> 1222</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01223"></a><span class="lineno"> 1223</span>&#160;<span class="comment">The PNG specification gives the following color types:</span></div>
+<div class="line"><a name="l01224"></a><span class="lineno"> 1224</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01225"></a><span class="lineno"> 1225</span>&#160;<span class="comment">0: greyscale, bit depths 1, 2, 4, 8, 16</span></div>
+<div class="line"><a name="l01226"></a><span class="lineno"> 1226</span>&#160;<span class="comment">2: RGB, bit depths 8 and 16</span></div>
+<div class="line"><a name="l01227"></a><span class="lineno"> 1227</span>&#160;<span class="comment">3: palette, bit depths 1, 2, 4 and 8</span></div>
+<div class="line"><a name="l01228"></a><span class="lineno"> 1228</span>&#160;<span class="comment">4: greyscale with alpha, bit depths 8 and 16</span></div>
+<div class="line"><a name="l01229"></a><span class="lineno"> 1229</span>&#160;<span class="comment">6: RGBA, bit depths 8 and 16</span></div>
+<div class="line"><a name="l01230"></a><span class="lineno"> 1230</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01231"></a><span class="lineno"> 1231</span>&#160;<span class="comment">Bit depth is the amount of bits per pixel per color channel. So the total amount</span></div>
+<div class="line"><a name="l01232"></a><span class="lineno"> 1232</span>&#160;<span class="comment">of bits per pixel is: amount of channels * bitdepth.</span></div>
+<div class="line"><a name="l01233"></a><span class="lineno"> 1233</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01234"></a><span class="lineno"> 1234</span>&#160;<span class="comment">6.2. color conversions</span></div>
+<div class="line"><a name="l01235"></a><span class="lineno"> 1235</span>&#160;<span class="comment">----------------------</span></div>
+<div class="line"><a name="l01236"></a><span class="lineno"> 1236</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01237"></a><span class="lineno"> 1237</span>&#160;<span class="comment">As explained in the sections about the encoder and decoder, you can specify</span></div>
+<div class="line"><a name="l01238"></a><span class="lineno"> 1238</span>&#160;<span class="comment">color types and bit depths in info_png and info_raw to change the default</span></div>
+<div class="line"><a name="l01239"></a><span class="lineno"> 1239</span>&#160;<span class="comment">behaviour.</span></div>
+<div class="line"><a name="l01240"></a><span class="lineno"> 1240</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01241"></a><span class="lineno"> 1241</span>&#160;<span class="comment">If, when decoding, you want the raw image to be something else than the default,</span></div>
+<div class="line"><a name="l01242"></a><span class="lineno"> 1242</span>&#160;<span class="comment">you need to set the color type and bit depth you want in the LodePNGColorMode,</span></div>
+<div class="line"><a name="l01243"></a><span class="lineno"> 1243</span>&#160;<span class="comment">or the parameters of the simple function of LodePNG you&#39;re using.</span></div>
+<div class="line"><a name="l01244"></a><span class="lineno"> 1244</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01245"></a><span class="lineno"> 1245</span>&#160;<span class="comment">If, when encoding, you use another color type than the default in the input</span></div>
+<div class="line"><a name="l01246"></a><span class="lineno"> 1246</span>&#160;<span class="comment">image, you need to specify its color type and bit depth in the LodePNGColorMode</span></div>
+<div class="line"><a name="l01247"></a><span class="lineno"> 1247</span>&#160;<span class="comment">of the raw image, or use the parameters of the simplefunction of LodePNG you&#39;re</span></div>
+<div class="line"><a name="l01248"></a><span class="lineno"> 1248</span>&#160;<span class="comment">using.</span></div>
+<div class="line"><a name="l01249"></a><span class="lineno"> 1249</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01250"></a><span class="lineno"> 1250</span>&#160;<span class="comment">If, when encoding, you don&#39;t want LodePNG to choose the output PNG color type</span></div>
+<div class="line"><a name="l01251"></a><span class="lineno"> 1251</span>&#160;<span class="comment">but control it yourself, you need to set auto_convert in the encoder settings</span></div>
+<div class="line"><a name="l01252"></a><span class="lineno"> 1252</span>&#160;<span class="comment">to LAC_NONE, and specify the color type you want in the LodePNGInfo of the</span></div>
+<div class="line"><a name="l01253"></a><span class="lineno"> 1253</span>&#160;<span class="comment">encoder.</span></div>
+<div class="line"><a name="l01254"></a><span class="lineno"> 1254</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01255"></a><span class="lineno"> 1255</span>&#160;<span class="comment">If you do any of the above, LodePNG may need to do a color conversion, which</span></div>
+<div class="line"><a name="l01256"></a><span class="lineno"> 1256</span>&#160;<span class="comment">follows the rules below, and may sometimes not be allowed.</span></div>
+<div class="line"><a name="l01257"></a><span class="lineno"> 1257</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01258"></a><span class="lineno"> 1258</span>&#160;<span class="comment">To avoid some confusion:</span></div>
+<div class="line"><a name="l01259"></a><span class="lineno"> 1259</span>&#160;<span class="comment">-the decoder converts from PNG to raw image</span></div>
+<div class="line"><a name="l01260"></a><span class="lineno"> 1260</span>&#160;<span class="comment">-the encoder converts from raw image to PNG</span></div>
+<div class="line"><a name="l01261"></a><span class="lineno"> 1261</span>&#160;<span class="comment">-the colortype and bitdepth in LodePNGColorMode info_raw, are those of the raw image</span></div>
+<div class="line"><a name="l01262"></a><span class="lineno"> 1262</span>&#160;<span class="comment">-the colortype and bitdepth in the color field of LodePNGInfo info_png, are those of the PNG</span></div>
+<div class="line"><a name="l01263"></a><span class="lineno"> 1263</span>&#160;<span class="comment">-when encoding, the color type in LodePNGInfo is ignored if auto_convert</span></div>
+<div class="line"><a name="l01264"></a><span class="lineno"> 1264</span>&#160;<span class="comment"> is enabled, it is automatically generated instead</span></div>
+<div class="line"><a name="l01265"></a><span class="lineno"> 1265</span>&#160;<span class="comment">-when decoding, the color type in LodePNGInfo is set by the decoder to that of the original</span></div>
+<div class="line"><a name="l01266"></a><span class="lineno"> 1266</span>&#160;<span class="comment"> PNG image, but it can be ignored since the raw image has the color type you requested instead</span></div>
+<div class="line"><a name="l01267"></a><span class="lineno"> 1267</span>&#160;<span class="comment">-if the color type of the LodePNGColorMode and PNG image aren&#39;t the same, a conversion</span></div>
+<div class="line"><a name="l01268"></a><span class="lineno"> 1268</span>&#160;<span class="comment"> between the color types is done if the color types are supported. If it is not</span></div>
+<div class="line"><a name="l01269"></a><span class="lineno"> 1269</span>&#160;<span class="comment"> supported, an error is returned. If the types are the same, no conversion is done.</span></div>
+<div class="line"><a name="l01270"></a><span class="lineno"> 1270</span>&#160;<span class="comment">-even though some conversions aren&#39;t supported, LodePNG supports loading PNGs from any</span></div>
+<div class="line"><a name="l01271"></a><span class="lineno"> 1271</span>&#160;<span class="comment"> colortype and saving PNGs to any colortype, sometimes it just requires preparing</span></div>
+<div class="line"><a name="l01272"></a><span class="lineno"> 1272</span>&#160;<span class="comment"> the raw image correctly before encoding.</span></div>
+<div class="line"><a name="l01273"></a><span class="lineno"> 1273</span>&#160;<span class="comment">-both encoder and decoder use the same color converter.</span></div>
+<div class="line"><a name="l01274"></a><span class="lineno"> 1274</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01275"></a><span class="lineno"> 1275</span>&#160;<span class="comment">Non supported color conversions:</span></div>
+<div class="line"><a name="l01276"></a><span class="lineno"> 1276</span>&#160;<span class="comment">-color to greyscale: no error is thrown, but the result will look ugly because</span></div>
+<div class="line"><a name="l01277"></a><span class="lineno"> 1277</span>&#160;<span class="comment">only the red channel is taken</span></div>
+<div class="line"><a name="l01278"></a><span class="lineno"> 1278</span>&#160;<span class="comment">-anything, to palette when that palette does not have that color in it: in this</span></div>
+<div class="line"><a name="l01279"></a><span class="lineno"> 1279</span>&#160;<span class="comment">case an error is thrown</span></div>
+<div class="line"><a name="l01280"></a><span class="lineno"> 1280</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01281"></a><span class="lineno"> 1281</span>&#160;<span class="comment">Supported color conversions:</span></div>
+<div class="line"><a name="l01282"></a><span class="lineno"> 1282</span>&#160;<span class="comment">-anything to 8-bit RGB, 8-bit RGBA, 16-bit RGB, 16-bit RGBA</span></div>
+<div class="line"><a name="l01283"></a><span class="lineno"> 1283</span>&#160;<span class="comment">-any grey or grey+alpha, to grey or grey+alpha</span></div>
+<div class="line"><a name="l01284"></a><span class="lineno"> 1284</span>&#160;<span class="comment">-anything to a palette, as long as the palette has the requested colors in it</span></div>
+<div class="line"><a name="l01285"></a><span class="lineno"> 1285</span>&#160;<span class="comment">-removing alpha channel</span></div>
+<div class="line"><a name="l01286"></a><span class="lineno"> 1286</span>&#160;<span class="comment">-higher to smaller bitdepth, and vice versa</span></div>
+<div class="line"><a name="l01287"></a><span class="lineno"> 1287</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01288"></a><span class="lineno"> 1288</span>&#160;<span class="comment">If you want no color conversion to be done:</span></div>
+<div class="line"><a name="l01289"></a><span class="lineno"> 1289</span>&#160;<span class="comment">-In the encoder, you can make it save a PNG with any color type by giving the</span></div>
+<div class="line"><a name="l01290"></a><span class="lineno"> 1290</span>&#160;<span class="comment">raw color mode and LodePNGInfo the same color mode, and setting auto_convert to</span></div>
+<div class="line"><a name="l01291"></a><span class="lineno"> 1291</span>&#160;<span class="comment">LAC_NO.</span></div>
+<div class="line"><a name="l01292"></a><span class="lineno"> 1292</span>&#160;<span class="comment">-In the decoder, you can make it store the pixel data in the same color type</span></div>
+<div class="line"><a name="l01293"></a><span class="lineno"> 1293</span>&#160;<span class="comment">as the PNG has, by setting the color_convert setting to false. Settings in</span></div>
+<div class="line"><a name="l01294"></a><span class="lineno"> 1294</span>&#160;<span class="comment">info_raw are then ignored.</span></div>
+<div class="line"><a name="l01295"></a><span class="lineno"> 1295</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01296"></a><span class="lineno"> 1296</span>&#160;<span class="comment">The function lodepng_convert does the color conversion. It is available in the</span></div>
+<div class="line"><a name="l01297"></a><span class="lineno"> 1297</span>&#160;<span class="comment">interface but normally isn&#39;t needed since the encoder and decoder already call</span></div>
+<div class="line"><a name="l01298"></a><span class="lineno"> 1298</span>&#160;<span class="comment">it.</span></div>
+<div class="line"><a name="l01299"></a><span class="lineno"> 1299</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01300"></a><span class="lineno"> 1300</span>&#160;<span class="comment">6.3. padding bits</span></div>
+<div class="line"><a name="l01301"></a><span class="lineno"> 1301</span>&#160;<span class="comment">-----------------</span></div>
+<div class="line"><a name="l01302"></a><span class="lineno"> 1302</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01303"></a><span class="lineno"> 1303</span>&#160;<span class="comment">In the PNG file format, if a less than 8-bit per pixel color type is used and the scanlines</span></div>
+<div class="line"><a name="l01304"></a><span class="lineno"> 1304</span>&#160;<span class="comment">have a bit amount that isn&#39;t a multiple of 8, then padding bits are used so that each</span></div>
+<div class="line"><a name="l01305"></a><span class="lineno"> 1305</span>&#160;<span class="comment">scanline starts at a fresh byte. But that is NOT true for the LodePNG raw input and output.</span></div>
+<div class="line"><a name="l01306"></a><span class="lineno"> 1306</span>&#160;<span class="comment">The raw input image you give to the encoder, and the raw output image you get from the decoder</span></div>
+<div class="line"><a name="l01307"></a><span class="lineno"> 1307</span>&#160;<span class="comment">will NOT have these padding bits, e.g. in the case of a 1-bit image with a width</span></div>
+<div class="line"><a name="l01308"></a><span class="lineno"> 1308</span>&#160;<span class="comment">of 7 pixels, the first pixel of the second scanline will the the 8th bit of the first byte,</span></div>
+<div class="line"><a name="l01309"></a><span class="lineno"> 1309</span>&#160;<span class="comment">not the first bit of a new byte.</span></div>
+<div class="line"><a name="l01310"></a><span class="lineno"> 1310</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01311"></a><span class="lineno"> 1311</span>&#160;<span class="comment">6.4. A note about 16-bits per channel and endianness</span></div>
+<div class="line"><a name="l01312"></a><span class="lineno"> 1312</span>&#160;<span class="comment">----------------------------------------------------</span></div>
+<div class="line"><a name="l01313"></a><span class="lineno"> 1313</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01314"></a><span class="lineno"> 1314</span>&#160;<span class="comment">LodePNG uses unsigned char arrays for 16-bit per channel colors too, just like</span></div>
+<div class="line"><a name="l01315"></a><span class="lineno"> 1315</span>&#160;<span class="comment">for any other color format. The 16-bit values are stored in big endian (most</span></div>
+<div class="line"><a name="l01316"></a><span class="lineno"> 1316</span>&#160;<span class="comment">significant byte first) in these arrays. This is the opposite order of the</span></div>
+<div class="line"><a name="l01317"></a><span class="lineno"> 1317</span>&#160;<span class="comment">little endian used by x86 CPU&#39;s.</span></div>
+<div class="line"><a name="l01318"></a><span class="lineno"> 1318</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01319"></a><span class="lineno"> 1319</span>&#160;<span class="comment">LodePNG always uses big endian because the PNG file format does so internally.</span></div>
+<div class="line"><a name="l01320"></a><span class="lineno"> 1320</span>&#160;<span class="comment">Conversions to other formats than PNG uses internally are not supported by</span></div>
+<div class="line"><a name="l01321"></a><span class="lineno"> 1321</span>&#160;<span class="comment">LodePNG on purpose, there are myriads of formats, including endianness of 16-bit</span></div>
+<div class="line"><a name="l01322"></a><span class="lineno"> 1322</span>&#160;<span class="comment">colors, the order in which you store R, G, B and A, and so on. Supporting and</span></div>
+<div class="line"><a name="l01323"></a><span class="lineno"> 1323</span>&#160;<span class="comment">converting to/from all that is outside the scope of LodePNG.</span></div>
+<div class="line"><a name="l01324"></a><span class="lineno"> 1324</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01325"></a><span class="lineno"> 1325</span>&#160;<span class="comment">This may mean that, depending on your use case, you may want to convert the big</span></div>
+<div class="line"><a name="l01326"></a><span class="lineno"> 1326</span>&#160;<span class="comment">endian output of LodePNG to little endian with a for loop. This is certainly not</span></div>
+<div class="line"><a name="l01327"></a><span class="lineno"> 1327</span>&#160;<span class="comment">always needed, many applications and libraries support big endian 16-bit colors</span></div>
+<div class="line"><a name="l01328"></a><span class="lineno"> 1328</span>&#160;<span class="comment">anyway, but it means you cannot simply cast the unsigned char* buffer to an</span></div>
+<div class="line"><a name="l01329"></a><span class="lineno"> 1329</span>&#160;<span class="comment">unsigned short* buffer on x86 CPUs.</span></div>
+<div class="line"><a name="l01330"></a><span class="lineno"> 1330</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01331"></a><span class="lineno"> 1331</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01332"></a><span class="lineno"> 1332</span>&#160;<span class="comment">7. error values</span></div>
+<div class="line"><a name="l01333"></a><span class="lineno"> 1333</span>&#160;<span class="comment">---------------</span></div>
+<div class="line"><a name="l01334"></a><span class="lineno"> 1334</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01335"></a><span class="lineno"> 1335</span>&#160;<span class="comment">All functions in LodePNG that return an error code, return 0 if everything went</span></div>
+<div class="line"><a name="l01336"></a><span class="lineno"> 1336</span>&#160;<span class="comment">OK, or a non-zero code if there was an error.</span></div>
+<div class="line"><a name="l01337"></a><span class="lineno"> 1337</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01338"></a><span class="lineno"> 1338</span>&#160;<span class="comment">The meaning of the LodePNG error values can be retrieved with the function</span></div>
+<div class="line"><a name="l01339"></a><span class="lineno"> 1339</span>&#160;<span class="comment">lodepng_error_text: given the numerical error code, it returns a description</span></div>
+<div class="line"><a name="l01340"></a><span class="lineno"> 1340</span>&#160;<span class="comment">of the error in English as a string.</span></div>
+<div class="line"><a name="l01341"></a><span class="lineno"> 1341</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01342"></a><span class="lineno"> 1342</span>&#160;<span class="comment">Check the implementation of lodepng_error_text to see the meaning of each code.</span></div>
+<div class="line"><a name="l01343"></a><span class="lineno"> 1343</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01344"></a><span class="lineno"> 1344</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01345"></a><span class="lineno"> 1345</span>&#160;<span class="comment">8. chunks and PNG editing</span></div>
+<div class="line"><a name="l01346"></a><span class="lineno"> 1346</span>&#160;<span class="comment">-------------------------</span></div>
+<div class="line"><a name="l01347"></a><span class="lineno"> 1347</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01348"></a><span class="lineno"> 1348</span>&#160;<span class="comment">If you want to add extra chunks to a PNG you encode, or use LodePNG for a PNG</span></div>
+<div class="line"><a name="l01349"></a><span class="lineno"> 1349</span>&#160;<span class="comment">editor that should follow the rules about handling of unknown chunks, or if your</span></div>
+<div class="line"><a name="l01350"></a><span class="lineno"> 1350</span>&#160;<span class="comment">program is able to read other types of chunks than the ones handled by LodePNG,</span></div>
+<div class="line"><a name="l01351"></a><span class="lineno"> 1351</span>&#160;<span class="comment">then that&#39;s possible with the chunk functions of LodePNG.</span></div>
+<div class="line"><a name="l01352"></a><span class="lineno"> 1352</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01353"></a><span class="lineno"> 1353</span>&#160;<span class="comment">A PNG chunk has the following layout:</span></div>
+<div class="line"><a name="l01354"></a><span class="lineno"> 1354</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01355"></a><span class="lineno"> 1355</span>&#160;<span class="comment">4 bytes length</span></div>
+<div class="line"><a name="l01356"></a><span class="lineno"> 1356</span>&#160;<span class="comment">4 bytes type name</span></div>
+<div class="line"><a name="l01357"></a><span class="lineno"> 1357</span>&#160;<span class="comment">length bytes data</span></div>
+<div class="line"><a name="l01358"></a><span class="lineno"> 1358</span>&#160;<span class="comment">4 bytes CRC</span></div>
+<div class="line"><a name="l01359"></a><span class="lineno"> 1359</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01360"></a><span class="lineno"> 1360</span>&#160;<span class="comment">8.1. iterating through chunks</span></div>
+<div class="line"><a name="l01361"></a><span class="lineno"> 1361</span>&#160;<span class="comment">-----------------------------</span></div>
+<div class="line"><a name="l01362"></a><span class="lineno"> 1362</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01363"></a><span class="lineno"> 1363</span>&#160;<span class="comment">If you have a buffer containing the PNG image data, then the first chunk (the</span></div>
+<div class="line"><a name="l01364"></a><span class="lineno"> 1364</span>&#160;<span class="comment">IHDR chunk) starts at byte number 8 of that buffer. The first 8 bytes are the</span></div>
+<div class="line"><a name="l01365"></a><span class="lineno"> 1365</span>&#160;<span class="comment">signature of the PNG and are not part of a chunk. But if you start at byte 8</span></div>
+<div class="line"><a name="l01366"></a><span class="lineno"> 1366</span>&#160;<span class="comment">then you have a chunk, and can check the following things of it.</span></div>
+<div class="line"><a name="l01367"></a><span class="lineno"> 1367</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01368"></a><span class="lineno"> 1368</span>&#160;<span class="comment">NOTE: none of these functions check for memory buffer boundaries. To avoid</span></div>
+<div class="line"><a name="l01369"></a><span class="lineno"> 1369</span>&#160;<span class="comment">exploits, always make sure the buffer contains all the data of the chunks.</span></div>
+<div class="line"><a name="l01370"></a><span class="lineno"> 1370</span>&#160;<span class="comment">When using lodepng_chunk_next, make sure the returned value is within the</span></div>
+<div class="line"><a name="l01371"></a><span class="lineno"> 1371</span>&#160;<span class="comment">allocated memory.</span></div>
+<div class="line"><a name="l01372"></a><span class="lineno"> 1372</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01373"></a><span class="lineno"> 1373</span>&#160;<span class="comment">unsigned lodepng_chunk_length(const unsigned char* chunk):</span></div>
+<div class="line"><a name="l01374"></a><span class="lineno"> 1374</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01375"></a><span class="lineno"> 1375</span>&#160;<span class="comment">Get the length of the chunk&#39;s data. The total chunk length is this length + 12.</span></div>
+<div class="line"><a name="l01376"></a><span class="lineno"> 1376</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01377"></a><span class="lineno"> 1377</span>&#160;<span class="comment">void lodepng_chunk_type(char type[5], const unsigned char* chunk):</span></div>
+<div class="line"><a name="l01378"></a><span class="lineno"> 1378</span>&#160;<span class="comment">unsigned char lodepng_chunk_type_equals(const unsigned char* chunk, const char* type):</span></div>
+<div class="line"><a name="l01379"></a><span class="lineno"> 1379</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01380"></a><span class="lineno"> 1380</span>&#160;<span class="comment">Get the type of the chunk or compare if it&#39;s a certain type</span></div>
+<div class="line"><a name="l01381"></a><span class="lineno"> 1381</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01382"></a><span class="lineno"> 1382</span>&#160;<span class="comment">unsigned char lodepng_chunk_critical(const unsigned char* chunk):</span></div>
+<div class="line"><a name="l01383"></a><span class="lineno"> 1383</span>&#160;<span class="comment">unsigned char lodepng_chunk_private(const unsigned char* chunk):</span></div>
+<div class="line"><a name="l01384"></a><span class="lineno"> 1384</span>&#160;<span class="comment">unsigned char lodepng_chunk_safetocopy(const unsigned char* chunk):</span></div>
+<div class="line"><a name="l01385"></a><span class="lineno"> 1385</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01386"></a><span class="lineno"> 1386</span>&#160;<span class="comment">Check if the chunk is critical in the PNG standard (only IHDR, PLTE, IDAT and IEND are).</span></div>
+<div class="line"><a name="l01387"></a><span class="lineno"> 1387</span>&#160;<span class="comment">Check if the chunk is private (public chunks are part of the standard, private ones not).</span></div>
+<div class="line"><a name="l01388"></a><span class="lineno"> 1388</span>&#160;<span class="comment">Check if the chunk is safe to copy. If it&#39;s not, then, when modifying data in a critical</span></div>
+<div class="line"><a name="l01389"></a><span class="lineno"> 1389</span>&#160;<span class="comment">chunk, unsafe to copy chunks of the old image may NOT be saved in the new one if your</span></div>
+<div class="line"><a name="l01390"></a><span class="lineno"> 1390</span>&#160;<span class="comment">program doesn&#39;t handle that type of unknown chunk.</span></div>
+<div class="line"><a name="l01391"></a><span class="lineno"> 1391</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01392"></a><span class="lineno"> 1392</span>&#160;<span class="comment">unsigned char* lodepng_chunk_data(unsigned char* chunk):</span></div>
+<div class="line"><a name="l01393"></a><span class="lineno"> 1393</span>&#160;<span class="comment">const unsigned char* lodepng_chunk_data_const(const unsigned char* chunk):</span></div>
+<div class="line"><a name="l01394"></a><span class="lineno"> 1394</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01395"></a><span class="lineno"> 1395</span>&#160;<span class="comment">Get a pointer to the start of the data of the chunk.</span></div>
+<div class="line"><a name="l01396"></a><span class="lineno"> 1396</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01397"></a><span class="lineno"> 1397</span>&#160;<span class="comment">unsigned lodepng_chunk_check_crc(const unsigned char* chunk):</span></div>
+<div class="line"><a name="l01398"></a><span class="lineno"> 1398</span>&#160;<span class="comment">void lodepng_chunk_generate_crc(unsigned char* chunk):</span></div>
+<div class="line"><a name="l01399"></a><span class="lineno"> 1399</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01400"></a><span class="lineno"> 1400</span>&#160;<span class="comment">Check if the crc is correct or generate a correct one.</span></div>
+<div class="line"><a name="l01401"></a><span class="lineno"> 1401</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01402"></a><span class="lineno"> 1402</span>&#160;<span class="comment">unsigned char* lodepng_chunk_next(unsigned char* chunk):</span></div>
+<div class="line"><a name="l01403"></a><span class="lineno"> 1403</span>&#160;<span class="comment">const unsigned char* lodepng_chunk_next_const(const unsigned char* chunk):</span></div>
+<div class="line"><a name="l01404"></a><span class="lineno"> 1404</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01405"></a><span class="lineno"> 1405</span>&#160;<span class="comment">Iterate to the next chunk. This works if you have a buffer with consecutive chunks. Note that these</span></div>
+<div class="line"><a name="l01406"></a><span class="lineno"> 1406</span>&#160;<span class="comment">functions do no boundary checking of the allocated data whatsoever, so make sure there is enough</span></div>
+<div class="line"><a name="l01407"></a><span class="lineno"> 1407</span>&#160;<span class="comment">data available in the buffer to be able to go to the next chunk.</span></div>
+<div class="line"><a name="l01408"></a><span class="lineno"> 1408</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01409"></a><span class="lineno"> 1409</span>&#160;<span class="comment">unsigned lodepng_chunk_append(unsigned char** out, size_t* outlength, const unsigned char* chunk):</span></div>
+<div class="line"><a name="l01410"></a><span class="lineno"> 1410</span>&#160;<span class="comment">unsigned lodepng_chunk_create(unsigned char** out, size_t* outlength, unsigned length,</span></div>
+<div class="line"><a name="l01411"></a><span class="lineno"> 1411</span>&#160;<span class="comment">                              const char* type, const unsigned char* data):</span></div>
+<div class="line"><a name="l01412"></a><span class="lineno"> 1412</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01413"></a><span class="lineno"> 1413</span>&#160;<span class="comment">These functions are used to create new chunks that are appended to the data in *out that has</span></div>
+<div class="line"><a name="l01414"></a><span class="lineno"> 1414</span>&#160;<span class="comment">length *outlength. The append function appends an existing chunk to the new data. The create</span></div>
+<div class="line"><a name="l01415"></a><span class="lineno"> 1415</span>&#160;<span class="comment">function creates a new chunk with the given parameters and appends it. Type is the 4-letter</span></div>
+<div class="line"><a name="l01416"></a><span class="lineno"> 1416</span>&#160;<span class="comment">name of the chunk.</span></div>
+<div class="line"><a name="l01417"></a><span class="lineno"> 1417</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01418"></a><span class="lineno"> 1418</span>&#160;<span class="comment">8.2. chunks in info_png</span></div>
+<div class="line"><a name="l01419"></a><span class="lineno"> 1419</span>&#160;<span class="comment">-----------------------</span></div>
+<div class="line"><a name="l01420"></a><span class="lineno"> 1420</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01421"></a><span class="lineno"> 1421</span>&#160;<span class="comment">The LodePNGInfo struct contains fields with the unknown chunk in it. It has 3</span></div>
+<div class="line"><a name="l01422"></a><span class="lineno"> 1422</span>&#160;<span class="comment">buffers (each with size) to contain 3 types of unknown chunks:</span></div>
+<div class="line"><a name="l01423"></a><span class="lineno"> 1423</span>&#160;<span class="comment">the ones that come before the PLTE chunk, the ones that come between the PLTE</span></div>
+<div class="line"><a name="l01424"></a><span class="lineno"> 1424</span>&#160;<span class="comment">and the IDAT chunks, and the ones that come after the IDAT chunks.</span></div>
+<div class="line"><a name="l01425"></a><span class="lineno"> 1425</span>&#160;<span class="comment">It&#39;s necessary to make the distionction between these 3 cases because the PNG</span></div>
+<div class="line"><a name="l01426"></a><span class="lineno"> 1426</span>&#160;<span class="comment">standard forces to keep the ordering of unknown chunks compared to the critical</span></div>
+<div class="line"><a name="l01427"></a><span class="lineno"> 1427</span>&#160;<span class="comment">chunks, but does not force any other ordering rules.</span></div>
+<div class="line"><a name="l01428"></a><span class="lineno"> 1428</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01429"></a><span class="lineno"> 1429</span>&#160;<span class="comment">info_png.unknown_chunks_data[0] is the chunks before PLTE</span></div>
+<div class="line"><a name="l01430"></a><span class="lineno"> 1430</span>&#160;<span class="comment">info_png.unknown_chunks_data[1] is the chunks after PLTE, before IDAT</span></div>
+<div class="line"><a name="l01431"></a><span class="lineno"> 1431</span>&#160;<span class="comment">info_png.unknown_chunks_data[2] is the chunks after IDAT</span></div>
+<div class="line"><a name="l01432"></a><span class="lineno"> 1432</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01433"></a><span class="lineno"> 1433</span>&#160;<span class="comment">The chunks in these 3 buffers can be iterated through and read by using the same</span></div>
+<div class="line"><a name="l01434"></a><span class="lineno"> 1434</span>&#160;<span class="comment">way described in the previous subchapter.</span></div>
+<div class="line"><a name="l01435"></a><span class="lineno"> 1435</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01436"></a><span class="lineno"> 1436</span>&#160;<span class="comment">When using the decoder to decode a PNG, you can make it store all unknown chunks</span></div>
+<div class="line"><a name="l01437"></a><span class="lineno"> 1437</span>&#160;<span class="comment">if you set the option settings.remember_unknown_chunks to 1. By default, this</span></div>
+<div class="line"><a name="l01438"></a><span class="lineno"> 1438</span>&#160;<span class="comment">option is off (0).</span></div>
+<div class="line"><a name="l01439"></a><span class="lineno"> 1439</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01440"></a><span class="lineno"> 1440</span>&#160;<span class="comment">The encoder will always encode unknown chunks that are stored in the info_png.</span></div>
+<div class="line"><a name="l01441"></a><span class="lineno"> 1441</span>&#160;<span class="comment">If you need it to add a particular chunk that isn&#39;t known by LodePNG, you can</span></div>
+<div class="line"><a name="l01442"></a><span class="lineno"> 1442</span>&#160;<span class="comment">use lodepng_chunk_append or lodepng_chunk_create to the chunk data in</span></div>
+<div class="line"><a name="l01443"></a><span class="lineno"> 1443</span>&#160;<span class="comment">info_png.unknown_chunks_data[x].</span></div>
+<div class="line"><a name="l01444"></a><span class="lineno"> 1444</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01445"></a><span class="lineno"> 1445</span>&#160;<span class="comment">Chunks that are known by LodePNG should not be added in that way. E.g. to make</span></div>
+<div class="line"><a name="l01446"></a><span class="lineno"> 1446</span>&#160;<span class="comment">LodePNG add a bKGD chunk, set background_defined to true and add the correct</span></div>
+<div class="line"><a name="l01447"></a><span class="lineno"> 1447</span>&#160;<span class="comment">parameters there instead.</span></div>
+<div class="line"><a name="l01448"></a><span class="lineno"> 1448</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01449"></a><span class="lineno"> 1449</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01450"></a><span class="lineno"> 1450</span>&#160;<span class="comment">9. compiler support</span></div>
+<div class="line"><a name="l01451"></a><span class="lineno"> 1451</span>&#160;<span class="comment">-------------------</span></div>
+<div class="line"><a name="l01452"></a><span class="lineno"> 1452</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01453"></a><span class="lineno"> 1453</span>&#160;<span class="comment">No libraries other than the current standard C library are needed to compile</span></div>
+<div class="line"><a name="l01454"></a><span class="lineno"> 1454</span>&#160;<span class="comment">LodePNG. For the C++ version, only the standard C++ library is needed on top.</span></div>
+<div class="line"><a name="l01455"></a><span class="lineno"> 1455</span>&#160;<span class="comment">Add the files lodepng.c(pp) and lodepng.h to your project, include</span></div>
+<div class="line"><a name="l01456"></a><span class="lineno"> 1456</span>&#160;<span class="comment">lodepng.h where needed, and your program can read/write PNG files.</span></div>
+<div class="line"><a name="l01457"></a><span class="lineno"> 1457</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01458"></a><span class="lineno"> 1458</span>&#160;<span class="comment">If performance is important, use optimization when compiling! For both the</span></div>
+<div class="line"><a name="l01459"></a><span class="lineno"> 1459</span>&#160;<span class="comment">encoder and decoder, this makes a large difference.</span></div>
+<div class="line"><a name="l01460"></a><span class="lineno"> 1460</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01461"></a><span class="lineno"> 1461</span>&#160;<span class="comment">Make sure that LodePNG is compiled with the same compiler of the same version</span></div>
+<div class="line"><a name="l01462"></a><span class="lineno"> 1462</span>&#160;<span class="comment">and with the same settings as the rest of the program, or the interfaces with</span></div>
+<div class="line"><a name="l01463"></a><span class="lineno"> 1463</span>&#160;<span class="comment">std::vectors and std::strings in C++ can be incompatible.</span></div>
+<div class="line"><a name="l01464"></a><span class="lineno"> 1464</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01465"></a><span class="lineno"> 1465</span>&#160;<span class="comment">CHAR_BITS must be 8 or higher, because LodePNG uses unsigned chars for octets.</span></div>
+<div class="line"><a name="l01466"></a><span class="lineno"> 1466</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01467"></a><span class="lineno"> 1467</span>&#160;<span class="comment">*) gcc and g++</span></div>
+<div class="line"><a name="l01468"></a><span class="lineno"> 1468</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01469"></a><span class="lineno"> 1469</span>&#160;<span class="comment">LodePNG is developed in gcc so this compiler is natively supported. It gives no</span></div>
+<div class="line"><a name="l01470"></a><span class="lineno"> 1470</span>&#160;<span class="comment">warnings with compiler options &quot;-Wall -Wextra -pedantic -ansi&quot;, with gcc and g++</span></div>
+<div class="line"><a name="l01471"></a><span class="lineno"> 1471</span>&#160;<span class="comment">version 4.7.1 on Linux, 32-bit and 64-bit.</span></div>
+<div class="line"><a name="l01472"></a><span class="lineno"> 1472</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01473"></a><span class="lineno"> 1473</span>&#160;<span class="comment">*) Mingw</span></div>
+<div class="line"><a name="l01474"></a><span class="lineno"> 1474</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01475"></a><span class="lineno"> 1475</span>&#160;<span class="comment">The Mingw compiler (a port of gcc) for Windows is fully supported by LodePNG.</span></div>
+<div class="line"><a name="l01476"></a><span class="lineno"> 1476</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01477"></a><span class="lineno"> 1477</span>&#160;<span class="comment">*) Visual Studio 2005 and up, Visual C++ Express Edition 2005 and up</span></div>
+<div class="line"><a name="l01478"></a><span class="lineno"> 1478</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01479"></a><span class="lineno"> 1479</span>&#160;<span class="comment">Visual Studio may give warnings about &#39;fopen&#39; being deprecated. A multiplatform library</span></div>
+<div class="line"><a name="l01480"></a><span class="lineno"> 1480</span>&#160;<span class="comment">can&#39;t support the proposed Visual Studio alternative however, so LodePNG keeps using</span></div>
+<div class="line"><a name="l01481"></a><span class="lineno"> 1481</span>&#160;<span class="comment">fopen. If you don&#39;t want to see the deprecated warnings, put this on top of lodepng.h</span></div>
+<div class="line"><a name="l01482"></a><span class="lineno"> 1482</span>&#160;<span class="comment">before the inclusions:</span></div>
+<div class="line"><a name="l01483"></a><span class="lineno"> 1483</span>&#160;<span class="comment">#define _CRT_SECURE_NO_DEPRECATE</span></div>
+<div class="line"><a name="l01484"></a><span class="lineno"> 1484</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01485"></a><span class="lineno"> 1485</span>&#160;<span class="comment">Other than the above warnings, LodePNG should be warning-free with warning</span></div>
+<div class="line"><a name="l01486"></a><span class="lineno"> 1486</span>&#160;<span class="comment">level 3 (W3). Warning level 4 (W4) will give warnings about integer conversions.</span></div>
+<div class="line"><a name="l01487"></a><span class="lineno"> 1487</span>&#160;<span class="comment">I&#39;m not planning to resolve these warnings. To get rid of them, let Visual</span></div>
+<div class="line"><a name="l01488"></a><span class="lineno"> 1488</span>&#160;<span class="comment">Studio use warning level W3 for lodepng.cpp only: right click lodepng.cpp,</span></div>
+<div class="line"><a name="l01489"></a><span class="lineno"> 1489</span>&#160;<span class="comment">Properties, C/C++, General, Warning Level: Level 3 (/W3).</span></div>
+<div class="line"><a name="l01490"></a><span class="lineno"> 1490</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01491"></a><span class="lineno"> 1491</span>&#160;<span class="comment">Visual Studio may want &quot;stdafx.h&quot; files to be included in each source file and</span></div>
+<div class="line"><a name="l01492"></a><span class="lineno"> 1492</span>&#160;<span class="comment">give an error &quot;unexpected end of file while looking for precompiled header&quot;.</span></div>
+<div class="line"><a name="l01493"></a><span class="lineno"> 1493</span>&#160;<span class="comment">That is not standard C++ and will not be added to the stock LodePNG. You can</span></div>
+<div class="line"><a name="l01494"></a><span class="lineno"> 1494</span>&#160;<span class="comment">disable it for lodepng.cpp only by right clicking it, Properties, C/C++,</span></div>
+<div class="line"><a name="l01495"></a><span class="lineno"> 1495</span>&#160;<span class="comment">Precompiled Headers, and set it to Not Using Precompiled Headers there.</span></div>
+<div class="line"><a name="l01496"></a><span class="lineno"> 1496</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01497"></a><span class="lineno"> 1497</span>&#160;<span class="comment">*) Visual Studio 6.0</span></div>
+<div class="line"><a name="l01498"></a><span class="lineno"> 1498</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01499"></a><span class="lineno"> 1499</span>&#160;<span class="comment">LodePNG support for Visual Studio 6.0 is not guaranteed because VS6 doesn&#39;t</span></div>
+<div class="line"><a name="l01500"></a><span class="lineno"> 1500</span>&#160;<span class="comment">follow the C++ standard correctly.</span></div>
+<div class="line"><a name="l01501"></a><span class="lineno"> 1501</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01502"></a><span class="lineno"> 1502</span>&#160;<span class="comment">*) Comeau C/C++</span></div>
+<div class="line"><a name="l01503"></a><span class="lineno"> 1503</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01504"></a><span class="lineno"> 1504</span>&#160;<span class="comment">Vesion 20070107 compiles without problems on the Comeau C/C++ Online Test Drive</span></div>
+<div class="line"><a name="l01505"></a><span class="lineno"> 1505</span>&#160;<span class="comment">at http://www.comeaucomputing.com/tryitout in both C90 and C++ mode.</span></div>
+<div class="line"><a name="l01506"></a><span class="lineno"> 1506</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01507"></a><span class="lineno"> 1507</span>&#160;<span class="comment">*) Compilers on Macintosh</span></div>
+<div class="line"><a name="l01508"></a><span class="lineno"> 1508</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01509"></a><span class="lineno"> 1509</span>&#160;<span class="comment">LodePNG has been reported to work both with the gcc and LLVM for Macintosh, both</span></div>
+<div class="line"><a name="l01510"></a><span class="lineno"> 1510</span>&#160;<span class="comment">for C and C++.</span></div>
+<div class="line"><a name="l01511"></a><span class="lineno"> 1511</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01512"></a><span class="lineno"> 1512</span>&#160;<span class="comment">*) Other Compilers</span></div>
+<div class="line"><a name="l01513"></a><span class="lineno"> 1513</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01514"></a><span class="lineno"> 1514</span>&#160;<span class="comment">If you encounter problems on other compilers, feel free to let me know and I may</span></div>
+<div class="line"><a name="l01515"></a><span class="lineno"> 1515</span>&#160;<span class="comment">try to fix it if the compiler is modern standards complient.</span></div>
+<div class="line"><a name="l01516"></a><span class="lineno"> 1516</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01517"></a><span class="lineno"> 1517</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01518"></a><span class="lineno"> 1518</span>&#160;<span class="comment">10. examples</span></div>
+<div class="line"><a name="l01519"></a><span class="lineno"> 1519</span>&#160;<span class="comment">------------</span></div>
+<div class="line"><a name="l01520"></a><span class="lineno"> 1520</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01521"></a><span class="lineno"> 1521</span>&#160;<span class="comment">This decoder example shows the most basic usage of LodePNG. More complex</span></div>
+<div class="line"><a name="l01522"></a><span class="lineno"> 1522</span>&#160;<span class="comment">examples can be found on the LodePNG website.</span></div>
+<div class="line"><a name="l01523"></a><span class="lineno"> 1523</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01524"></a><span class="lineno"> 1524</span>&#160;<span class="comment">10.1. decoder C++ example</span></div>
+<div class="line"><a name="l01525"></a><span class="lineno"> 1525</span>&#160;<span class="comment">-------------------------</span></div>
+<div class="line"><a name="l01526"></a><span class="lineno"> 1526</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01527"></a><span class="lineno"> 1527</span>&#160;<span class="comment">#include &quot;lodepng.h&quot;</span></div>
+<div class="line"><a name="l01528"></a><span class="lineno"> 1528</span>&#160;<span class="comment">#include &lt;iostream&gt;</span></div>
+<div class="line"><a name="l01529"></a><span class="lineno"> 1529</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01530"></a><span class="lineno"> 1530</span>&#160;<span class="comment">int main(int argc, char *argv[])</span></div>
+<div class="line"><a name="l01531"></a><span class="lineno"> 1531</span>&#160;<span class="comment">{</span></div>
+<div class="line"><a name="l01532"></a><span class="lineno"> 1532</span>&#160;<span class="comment">  const char* filename = argc &gt; 1 ? argv[1] : &quot;test.png&quot;;</span></div>
+<div class="line"><a name="l01533"></a><span class="lineno"> 1533</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01534"></a><span class="lineno"> 1534</span>&#160;<span class="comment">  //load and decode</span></div>
+<div class="line"><a name="l01535"></a><span class="lineno"> 1535</span>&#160;<span class="comment">  std::vector&lt;unsigned char&gt; image;</span></div>
+<div class="line"><a name="l01536"></a><span class="lineno"> 1536</span>&#160;<span class="comment">  unsigned width, height;</span></div>
+<div class="line"><a name="l01537"></a><span class="lineno"> 1537</span>&#160;<span class="comment">  unsigned error = lodepng::decode(image, width, height, filename);</span></div>
+<div class="line"><a name="l01538"></a><span class="lineno"> 1538</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01539"></a><span class="lineno"> 1539</span>&#160;<span class="comment">  //if there&#39;s an error, display it</span></div>
+<div class="line"><a name="l01540"></a><span class="lineno"> 1540</span>&#160;<span class="comment">  if(error) std::cout &lt;&lt; &quot;decoder error &quot; &lt;&lt; error &lt;&lt; &quot;: &quot; &lt;&lt; lodepng_error_text(error) &lt;&lt; std::endl;</span></div>
+<div class="line"><a name="l01541"></a><span class="lineno"> 1541</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01542"></a><span class="lineno"> 1542</span>&#160;<span class="comment">  //the pixels are now in the vector &quot;image&quot;, 4 bytes per pixel, ordered RGBARGBA..., use it as texture, draw it, ...</span></div>
+<div class="line"><a name="l01543"></a><span class="lineno"> 1543</span>&#160;<span class="comment">}</span></div>
+<div class="line"><a name="l01544"></a><span class="lineno"> 1544</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01545"></a><span class="lineno"> 1545</span>&#160;<span class="comment">10.2. decoder C example</span></div>
+<div class="line"><a name="l01546"></a><span class="lineno"> 1546</span>&#160;<span class="comment">-----------------------</span></div>
+<div class="line"><a name="l01547"></a><span class="lineno"> 1547</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01548"></a><span class="lineno"> 1548</span>&#160;<span class="comment">#include &quot;lodepng.h&quot;</span></div>
+<div class="line"><a name="l01549"></a><span class="lineno"> 1549</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01550"></a><span class="lineno"> 1550</span>&#160;<span class="comment">int main(int argc, char *argv[])</span></div>
+<div class="line"><a name="l01551"></a><span class="lineno"> 1551</span>&#160;<span class="comment">{</span></div>
+<div class="line"><a name="l01552"></a><span class="lineno"> 1552</span>&#160;<span class="comment">  unsigned error;</span></div>
+<div class="line"><a name="l01553"></a><span class="lineno"> 1553</span>&#160;<span class="comment">  unsigned char* image;</span></div>
+<div class="line"><a name="l01554"></a><span class="lineno"> 1554</span>&#160;<span class="comment">  size_t width, height;</span></div>
+<div class="line"><a name="l01555"></a><span class="lineno"> 1555</span>&#160;<span class="comment">  const char* filename = argc &gt; 1 ? argv[1] : &quot;test.png&quot;;</span></div>
+<div class="line"><a name="l01556"></a><span class="lineno"> 1556</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01557"></a><span class="lineno"> 1557</span>&#160;<span class="comment">  error = lodepng_decode32_file(&amp;image, &amp;width, &amp;height, filename);</span></div>
+<div class="line"><a name="l01558"></a><span class="lineno"> 1558</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01559"></a><span class="lineno"> 1559</span>&#160;<span class="comment">  if(error) printf(&quot;decoder error %u: %s\n&quot;, error, lodepng_error_text(error));</span></div>
+<div class="line"><a name="l01560"></a><span class="lineno"> 1560</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01561"></a><span class="lineno"> 1561</span>&#160;<span class="comment">  / * use image here * /</span></div>
+<div class="line"><a name="l01562"></a><span class="lineno"> 1562</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01563"></a><span class="lineno"> 1563</span>&#160;<span class="comment">  free(image);</span></div>
+<div class="line"><a name="l01564"></a><span class="lineno"> 1564</span>&#160;<span class="comment">  return 0;</span></div>
+<div class="line"><a name="l01565"></a><span class="lineno"> 1565</span>&#160;<span class="comment">}</span></div>
+<div class="line"><a name="l01566"></a><span class="lineno"> 1566</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01567"></a><span class="lineno"> 1567</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01568"></a><span class="lineno"> 1568</span>&#160;<span class="comment">11. changes</span></div>
+<div class="line"><a name="l01569"></a><span class="lineno"> 1569</span>&#160;<span class="comment">-----------</span></div>
+<div class="line"><a name="l01570"></a><span class="lineno"> 1570</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01571"></a><span class="lineno"> 1571</span>&#160;<span class="comment">The version number of LodePNG is the date of the change given in the format</span></div>
+<div class="line"><a name="l01572"></a><span class="lineno"> 1572</span>&#160;<span class="comment">yyyymmdd.</span></div>
+<div class="line"><a name="l01573"></a><span class="lineno"> 1573</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01574"></a><span class="lineno"> 1574</span>&#160;<span class="comment">Some changes aren&#39;t backwards compatible. Those are indicated with a (!)</span></div>
+<div class="line"><a name="l01575"></a><span class="lineno"> 1575</span>&#160;<span class="comment">symbol.</span></div>
+<div class="line"><a name="l01576"></a><span class="lineno"> 1576</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01577"></a><span class="lineno"> 1577</span>&#160;<span class="comment">*) 22 dec 2013: Power of two windowsize required for optimization.</span></div>
+<div class="line"><a name="l01578"></a><span class="lineno"> 1578</span>&#160;<span class="comment">*) 15 apr 2013: Fixed bug with LAC_ALPHA and color key.</span></div>
+<div class="line"><a name="l01579"></a><span class="lineno"> 1579</span>&#160;<span class="comment">*) 25 mar 2013: Added an optional feature to ignore some PNG errors (fix_png).</span></div>
+<div class="line"><a name="l01580"></a><span class="lineno"> 1580</span>&#160;<span class="comment">*) 11 mar 2013 (!): Bugfix with custom free. Changed from &quot;my&quot; to &quot;lodepng_&quot;</span></div>
+<div class="line"><a name="l01581"></a><span class="lineno"> 1581</span>&#160;<span class="comment">    prefix for the custom allocators and made it possible with a new #define to</span></div>
+<div class="line"><a name="l01582"></a><span class="lineno"> 1582</span>&#160;<span class="comment">    use custom ones in your project without needing to change lodepng&#39;s code.</span></div>
+<div class="line"><a name="l01583"></a><span class="lineno"> 1583</span>&#160;<span class="comment">*) 28 jan 2013: Bugfix with color key.</span></div>
+<div class="line"><a name="l01584"></a><span class="lineno"> 1584</span>&#160;<span class="comment">*) 27 okt 2012: Tweaks in text chunk keyword length error handling.</span></div>
+<div class="line"><a name="l01585"></a><span class="lineno"> 1585</span>&#160;<span class="comment">*) 8 okt 2012 (!): Added new filter strategy (entropy) and new auto color mode.</span></div>
+<div class="line"><a name="l01586"></a><span class="lineno"> 1586</span>&#160;<span class="comment">    (no palette). Better deflate tree encoding. New compression tweak settings.</span></div>
+<div class="line"><a name="l01587"></a><span class="lineno"> 1587</span>&#160;<span class="comment">    Faster color conversions while decoding. Some internal cleanups.</span></div>
+<div class="line"><a name="l01588"></a><span class="lineno"> 1588</span>&#160;<span class="comment">*) 23 sep 2012: Reduced warnings in Visual Studio a little bit.</span></div>
+<div class="line"><a name="l01589"></a><span class="lineno"> 1589</span>&#160;<span class="comment">*) 1 sep 2012 (!): Removed #define&#39;s for giving custom (de)compression functions</span></div>
+<div class="line"><a name="l01590"></a><span class="lineno"> 1590</span>&#160;<span class="comment">    and made it work with function pointers instead.</span></div>
+<div class="line"><a name="l01591"></a><span class="lineno"> 1591</span>&#160;<span class="comment">*) 23 jun 2012: Added more filter strategies. Made it easier to use custom alloc</span></div>
+<div class="line"><a name="l01592"></a><span class="lineno"> 1592</span>&#160;<span class="comment">    and free functions and toggle #defines from compiler flags. Small fixes.</span></div>
+<div class="line"><a name="l01593"></a><span class="lineno"> 1593</span>&#160;<span class="comment">*) 6 may 2012 (!): Made plugging in custom zlib/deflate functions more flexible.</span></div>
+<div class="line"><a name="l01594"></a><span class="lineno"> 1594</span>&#160;<span class="comment">*) 22 apr 2012 (!): Made interface more consistent, renaming a lot. Removed</span></div>
+<div class="line"><a name="l01595"></a><span class="lineno"> 1595</span>&#160;<span class="comment">    redundant C++ codec classes. Reduced amount of structs. Everything changed,</span></div>
+<div class="line"><a name="l01596"></a><span class="lineno"> 1596</span>&#160;<span class="comment">    but it is cleaner now imho and functionality remains the same. Also fixed</span></div>
+<div class="line"><a name="l01597"></a><span class="lineno"> 1597</span>&#160;<span class="comment">    several bugs and shrinked the implementation code. Made new samples.</span></div>
+<div class="line"><a name="l01598"></a><span class="lineno"> 1598</span>&#160;<span class="comment">*) 6 nov 2011 (!): By default, the encoder now automatically chooses the best</span></div>
+<div class="line"><a name="l01599"></a><span class="lineno"> 1599</span>&#160;<span class="comment">    PNG color model and bit depth, based on the amount and type of colors of the</span></div>
+<div class="line"><a name="l01600"></a><span class="lineno"> 1600</span>&#160;<span class="comment">    raw image. For this, autoLeaveOutAlphaChannel replaced by auto_choose_color.</span></div>
+<div class="line"><a name="l01601"></a><span class="lineno"> 1601</span>&#160;<span class="comment">*) 9 okt 2011: simpler hash chain implementation for the encoder.</span></div>
+<div class="line"><a name="l01602"></a><span class="lineno"> 1602</span>&#160;<span class="comment">*) 8 sep 2011: lz77 encoder lazy matching instead of greedy matching.</span></div>
+<div class="line"><a name="l01603"></a><span class="lineno"> 1603</span>&#160;<span class="comment">*) 23 aug 2011: tweaked the zlib compression parameters after benchmarking.</span></div>
+<div class="line"><a name="l01604"></a><span class="lineno"> 1604</span>&#160;<span class="comment">    A bug with the PNG filtertype heuristic was fixed, so that it chooses much</span></div>
+<div class="line"><a name="l01605"></a><span class="lineno"> 1605</span>&#160;<span class="comment">    better ones (it&#39;s quite significant). A setting to do an experimental, slow,</span></div>
+<div class="line"><a name="l01606"></a><span class="lineno"> 1606</span>&#160;<span class="comment">    brute force search for PNG filter types is added.</span></div>
+<div class="line"><a name="l01607"></a><span class="lineno"> 1607</span>&#160;<span class="comment">*) 17 aug 2011 (!): changed some C zlib related function names.</span></div>
+<div class="line"><a name="l01608"></a><span class="lineno"> 1608</span>&#160;<span class="comment">*) 16 aug 2011: made the code less wide (max 120 characters per line).</span></div>
+<div class="line"><a name="l01609"></a><span class="lineno"> 1609</span>&#160;<span class="comment">*) 17 apr 2011: code cleanup. Bugfixes. Convert low to 16-bit per sample colors.</span></div>
+<div class="line"><a name="l01610"></a><span class="lineno"> 1610</span>&#160;<span class="comment">*) 21 feb 2011: fixed compiling for C90. Fixed compiling with sections disabled.</span></div>
+<div class="line"><a name="l01611"></a><span class="lineno"> 1611</span>&#160;<span class="comment">*) 11 dec 2010: encoding is made faster, based on suggestion by Peter Eastman</span></div>
+<div class="line"><a name="l01612"></a><span class="lineno"> 1612</span>&#160;<span class="comment">    to optimize long sequences of zeros.</span></div>
+<div class="line"><a name="l01613"></a><span class="lineno"> 1613</span>&#160;<span class="comment">*) 13 nov 2010: added LodePNG_InfoColor_hasPaletteAlpha and</span></div>
+<div class="line"><a name="l01614"></a><span class="lineno"> 1614</span>&#160;<span class="comment">    LodePNG_InfoColor_canHaveAlpha functions for convenience.</span></div>
+<div class="line"><a name="l01615"></a><span class="lineno"> 1615</span>&#160;<span class="comment">*) 7 nov 2010: added LodePNG_error_text function to get error code description.</span></div>
+<div class="line"><a name="l01616"></a><span class="lineno"> 1616</span>&#160;<span class="comment">*) 30 okt 2010: made decoding slightly faster</span></div>
+<div class="line"><a name="l01617"></a><span class="lineno"> 1617</span>&#160;<span class="comment">*) 26 okt 2010: (!) changed some C function and struct names (more consistent).</span></div>
+<div class="line"><a name="l01618"></a><span class="lineno"> 1618</span>&#160;<span class="comment">     Reorganized the documentation and the declaration order in the header.</span></div>
+<div class="line"><a name="l01619"></a><span class="lineno"> 1619</span>&#160;<span class="comment">*) 08 aug 2010: only changed some comments and external samples.</span></div>
+<div class="line"><a name="l01620"></a><span class="lineno"> 1620</span>&#160;<span class="comment">*) 05 jul 2010: fixed bug thanks to warnings in the new gcc version.</span></div>
+<div class="line"><a name="l01621"></a><span class="lineno"> 1621</span>&#160;<span class="comment">*) 14 mar 2010: fixed bug where too much memory was allocated for char buffers.</span></div>
+<div class="line"><a name="l01622"></a><span class="lineno"> 1622</span>&#160;<span class="comment">*) 02 sep 2008: fixed bug where it could create empty tree that linux apps could</span></div>
+<div class="line"><a name="l01623"></a><span class="lineno"> 1623</span>&#160;<span class="comment">    read by ignoring the problem but windows apps couldn&#39;t.</span></div>
+<div class="line"><a name="l01624"></a><span class="lineno"> 1624</span>&#160;<span class="comment">*) 06 jun 2008: added more error checks for out of memory cases.</span></div>
+<div class="line"><a name="l01625"></a><span class="lineno"> 1625</span>&#160;<span class="comment">*) 26 apr 2008: added a few more checks here and there to ensure more safety.</span></div>
+<div class="line"><a name="l01626"></a><span class="lineno"> 1626</span>&#160;<span class="comment">*) 06 mar 2008: crash with encoding of strings fixed</span></div>
+<div class="line"><a name="l01627"></a><span class="lineno"> 1627</span>&#160;<span class="comment">*) 02 feb 2008: support for international text chunks added (iTXt)</span></div>
+<div class="line"><a name="l01628"></a><span class="lineno"> 1628</span>&#160;<span class="comment">*) 23 jan 2008: small cleanups, and #defines to divide code in sections</span></div>
+<div class="line"><a name="l01629"></a><span class="lineno"> 1629</span>&#160;<span class="comment">*) 20 jan 2008: support for unknown chunks allowing using LodePNG for an editor.</span></div>
+<div class="line"><a name="l01630"></a><span class="lineno"> 1630</span>&#160;<span class="comment">*) 18 jan 2008: support for tIME and pHYs chunks added to encoder and decoder.</span></div>
+<div class="line"><a name="l01631"></a><span class="lineno"> 1631</span>&#160;<span class="comment">*) 17 jan 2008: ability to encode and decode compressed zTXt chunks added</span></div>
+<div class="line"><a name="l01632"></a><span class="lineno"> 1632</span>&#160;<span class="comment">    Also vareous fixes, such as in the deflate and the padding bits code.</span></div>
+<div class="line"><a name="l01633"></a><span class="lineno"> 1633</span>&#160;<span class="comment">*) 13 jan 2008: Added ability to encode Adam7-interlaced images. Improved</span></div>
+<div class="line"><a name="l01634"></a><span class="lineno"> 1634</span>&#160;<span class="comment">    filtering code of encoder.</span></div>
+<div class="line"><a name="l01635"></a><span class="lineno"> 1635</span>&#160;<span class="comment">*) 07 jan 2008: (!) changed LodePNG to use ISO C90 instead of C++. A</span></div>
+<div class="line"><a name="l01636"></a><span class="lineno"> 1636</span>&#160;<span class="comment">    C++ wrapper around this provides an interface almost identical to before.</span></div>
+<div class="line"><a name="l01637"></a><span class="lineno"> 1637</span>&#160;<span class="comment">    Having LodePNG be pure ISO C90 makes it more portable. The C and C++ code</span></div>
+<div class="line"><a name="l01638"></a><span class="lineno"> 1638</span>&#160;<span class="comment">    are together in these files but it works both for C and C++ compilers.</span></div>
+<div class="line"><a name="l01639"></a><span class="lineno"> 1639</span>&#160;<span class="comment">*) 29 dec 2007: (!) changed most integer types to unsigned int + other tweaks</span></div>
+<div class="line"><a name="l01640"></a><span class="lineno"> 1640</span>&#160;<span class="comment">*) 30 aug 2007: bug fixed which makes this Borland C++ compatible</span></div>
+<div class="line"><a name="l01641"></a><span class="lineno"> 1641</span>&#160;<span class="comment">*) 09 aug 2007: some VS2005 warnings removed again</span></div>
+<div class="line"><a name="l01642"></a><span class="lineno"> 1642</span>&#160;<span class="comment">*) 21 jul 2007: deflate code placed in new namespace separate from zlib code</span></div>
+<div class="line"><a name="l01643"></a><span class="lineno"> 1643</span>&#160;<span class="comment">*) 08 jun 2007: fixed bug with 2- and 4-bit color, and small interlaced images</span></div>
+<div class="line"><a name="l01644"></a><span class="lineno"> 1644</span>&#160;<span class="comment">*) 04 jun 2007: improved support for Visual Studio 2005: crash with accessing</span></div>
+<div class="line"><a name="l01645"></a><span class="lineno"> 1645</span>&#160;<span class="comment">    invalid std::vector element [0] fixed, and level 3 and 4 warnings removed</span></div>
+<div class="line"><a name="l01646"></a><span class="lineno"> 1646</span>&#160;<span class="comment">*) 02 jun 2007: made the encoder add a tag with version by default</span></div>
+<div class="line"><a name="l01647"></a><span class="lineno"> 1647</span>&#160;<span class="comment">*) 27 may 2007: zlib and png code separated (but still in the same file),</span></div>
+<div class="line"><a name="l01648"></a><span class="lineno"> 1648</span>&#160;<span class="comment">    simple encoder/decoder functions added for more simple usage cases</span></div>
+<div class="line"><a name="l01649"></a><span class="lineno"> 1649</span>&#160;<span class="comment">*) 19 may 2007: minor fixes, some code cleaning, new error added (error 69),</span></div>
+<div class="line"><a name="l01650"></a><span class="lineno"> 1650</span>&#160;<span class="comment">    moved some examples from here to lodepng_examples.cpp</span></div>
+<div class="line"><a name="l01651"></a><span class="lineno"> 1651</span>&#160;<span class="comment">*) 12 may 2007: palette decoding bug fixed</span></div>
+<div class="line"><a name="l01652"></a><span class="lineno"> 1652</span>&#160;<span class="comment">*) 24 apr 2007: changed the license from BSD to the zlib license</span></div>
+<div class="line"><a name="l01653"></a><span class="lineno"> 1653</span>&#160;<span class="comment">*) 11 mar 2007: very simple addition: ability to encode bKGD chunks.</span></div>
+<div class="line"><a name="l01654"></a><span class="lineno"> 1654</span>&#160;<span class="comment">*) 04 mar 2007: (!) tEXt chunk related fixes, and support for encoding</span></div>
+<div class="line"><a name="l01655"></a><span class="lineno"> 1655</span>&#160;<span class="comment">    palettized PNG images. Plus little interface change with palette and texts.</span></div>
+<div class="line"><a name="l01656"></a><span class="lineno"> 1656</span>&#160;<span class="comment">*) 03 mar 2007: Made it encode dynamic Huffman shorter with repeat codes.</span></div>
+<div class="line"><a name="l01657"></a><span class="lineno"> 1657</span>&#160;<span class="comment">    Fixed a bug where the end code of a block had length 0 in the Huffman tree.</span></div>
+<div class="line"><a name="l01658"></a><span class="lineno"> 1658</span>&#160;<span class="comment">*) 26 feb 2007: Huffman compression with dynamic trees (BTYPE 2) now implemented</span></div>
+<div class="line"><a name="l01659"></a><span class="lineno"> 1659</span>&#160;<span class="comment">    and supported by the encoder, resulting in smaller PNGs at the output.</span></div>
+<div class="line"><a name="l01660"></a><span class="lineno"> 1660</span>&#160;<span class="comment">*) 27 jan 2007: Made the Adler-32 test faster so that a timewaste is gone.</span></div>
+<div class="line"><a name="l01661"></a><span class="lineno"> 1661</span>&#160;<span class="comment">*) 24 jan 2007: gave encoder an error interface. Added color conversion from any</span></div>
+<div class="line"><a name="l01662"></a><span class="lineno"> 1662</span>&#160;<span class="comment">    greyscale type to 8-bit greyscale with or without alpha.</span></div>
+<div class="line"><a name="l01663"></a><span class="lineno"> 1663</span>&#160;<span class="comment">*) 21 jan 2007: (!) Totally changed the interface. It allows more color types</span></div>
+<div class="line"><a name="l01664"></a><span class="lineno"> 1664</span>&#160;<span class="comment">    to convert to and is more uniform. See the manual for how it works now.</span></div>
+<div class="line"><a name="l01665"></a><span class="lineno"> 1665</span>&#160;<span class="comment">*) 07 jan 2007: Some cleanup &amp; fixes, and a few changes over the last days:</span></div>
+<div class="line"><a name="l01666"></a><span class="lineno"> 1666</span>&#160;<span class="comment">    encode/decode custom tEXt chunks, separate classes for zlib &amp; deflate, and</span></div>
+<div class="line"><a name="l01667"></a><span class="lineno"> 1667</span>&#160;<span class="comment">    at last made the decoder give errors for incorrect Adler32 or Crc.</span></div>
+<div class="line"><a name="l01668"></a><span class="lineno"> 1668</span>&#160;<span class="comment">*) 01 jan 2007: Fixed bug with encoding PNGs with less than 8 bits per channel.</span></div>
+<div class="line"><a name="l01669"></a><span class="lineno"> 1669</span>&#160;<span class="comment">*) 29 dec 2006: Added support for encoding images without alpha channel, and</span></div>
+<div class="line"><a name="l01670"></a><span class="lineno"> 1670</span>&#160;<span class="comment">    cleaned out code as well as making certain parts faster.</span></div>
+<div class="line"><a name="l01671"></a><span class="lineno"> 1671</span>&#160;<span class="comment">*) 28 dec 2006: Added &quot;Settings&quot; to the encoder.</span></div>
+<div class="line"><a name="l01672"></a><span class="lineno"> 1672</span>&#160;<span class="comment">*) 26 dec 2006: The encoder now does LZ77 encoding and produces much smaller files now.</span></div>
+<div class="line"><a name="l01673"></a><span class="lineno"> 1673</span>&#160;<span class="comment">    Removed some code duplication in the decoder. Fixed little bug in an example.</span></div>
+<div class="line"><a name="l01674"></a><span class="lineno"> 1674</span>&#160;<span class="comment">*) 09 dec 2006: (!) Placed output parameters of public functions as first parameter.</span></div>
+<div class="line"><a name="l01675"></a><span class="lineno"> 1675</span>&#160;<span class="comment">    Fixed a bug of the decoder with 16-bit per color.</span></div>
+<div class="line"><a name="l01676"></a><span class="lineno"> 1676</span>&#160;<span class="comment">*) 15 okt 2006: Changed documentation structure</span></div>
+<div class="line"><a name="l01677"></a><span class="lineno"> 1677</span>&#160;<span class="comment">*) 09 okt 2006: Encoder class added. It encodes a valid PNG image from the</span></div>
+<div class="line"><a name="l01678"></a><span class="lineno"> 1678</span>&#160;<span class="comment">    given image buffer, however for now it&#39;s not compressed.</span></div>
+<div class="line"><a name="l01679"></a><span class="lineno"> 1679</span>&#160;<span class="comment">*) 08 sep 2006: (!) Changed to interface with a Decoder class</span></div>
+<div class="line"><a name="l01680"></a><span class="lineno"> 1680</span>&#160;<span class="comment">*) 30 jul 2006: (!) LodePNG_InfoPng , width and height are now retrieved in different</span></div>
+<div class="line"><a name="l01681"></a><span class="lineno"> 1681</span>&#160;<span class="comment">    way. Renamed decodePNG to decodePNGGeneric.</span></div>
+<div class="line"><a name="l01682"></a><span class="lineno"> 1682</span>&#160;<span class="comment">*) 29 jul 2006: (!) Changed the interface: image info is now returned as a</span></div>
+<div class="line"><a name="l01683"></a><span class="lineno"> 1683</span>&#160;<span class="comment">    struct of type LodePNG::LodePNG_Info, instead of a vector, which was a bit clumsy.</span></div>
+<div class="line"><a name="l01684"></a><span class="lineno"> 1684</span>&#160;<span class="comment">*) 28 jul 2006: Cleaned the code and added new error checks.</span></div>
+<div class="line"><a name="l01685"></a><span class="lineno"> 1685</span>&#160;<span class="comment">    Corrected terminology &quot;deflate&quot; into &quot;inflate&quot;.</span></div>
+<div class="line"><a name="l01686"></a><span class="lineno"> 1686</span>&#160;<span class="comment">*) 23 jun 2006: Added SDL example in the documentation in the header, this</span></div>
+<div class="line"><a name="l01687"></a><span class="lineno"> 1687</span>&#160;<span class="comment">    example allows easy debugging by displaying the PNG and its transparency.</span></div>
+<div class="line"><a name="l01688"></a><span class="lineno"> 1688</span>&#160;<span class="comment">*) 22 jun 2006: (!) Changed way to obtain error value. Added</span></div>
+<div class="line"><a name="l01689"></a><span class="lineno"> 1689</span>&#160;<span class="comment">    loadFile function for convenience. Made decodePNG32 faster.</span></div>
+<div class="line"><a name="l01690"></a><span class="lineno"> 1690</span>&#160;<span class="comment">*) 21 jun 2006: (!) Changed type of info vector to unsigned.</span></div>
+<div class="line"><a name="l01691"></a><span class="lineno"> 1691</span>&#160;<span class="comment">    Changed position of palette in info vector. Fixed an important bug that</span></div>
+<div class="line"><a name="l01692"></a><span class="lineno"> 1692</span>&#160;<span class="comment">    happened on PNGs with an uncompressed block.</span></div>
+<div class="line"><a name="l01693"></a><span class="lineno"> 1693</span>&#160;<span class="comment">*) 16 jun 2006: Internally changed unsigned into unsigned where</span></div>
+<div class="line"><a name="l01694"></a><span class="lineno"> 1694</span>&#160;<span class="comment">    needed, and performed some optimizations.</span></div>
+<div class="line"><a name="l01695"></a><span class="lineno"> 1695</span>&#160;<span class="comment">*) 07 jun 2006: (!) Renamed functions to decodePNG and placed them</span></div>
+<div class="line"><a name="l01696"></a><span class="lineno"> 1696</span>&#160;<span class="comment">    in LodePNG namespace. Changed the order of the parameters. Rewrote the</span></div>
+<div class="line"><a name="l01697"></a><span class="lineno"> 1697</span>&#160;<span class="comment">    documentation in the header. Renamed files to lodepng.cpp and lodepng.h</span></div>
+<div class="line"><a name="l01698"></a><span class="lineno"> 1698</span>&#160;<span class="comment">*) 22 apr 2006: Optimized and improved some code</span></div>
+<div class="line"><a name="l01699"></a><span class="lineno"> 1699</span>&#160;<span class="comment">*) 07 sep 2005: (!) Changed to std::vector interface</span></div>
+<div class="line"><a name="l01700"></a><span class="lineno"> 1700</span>&#160;<span class="comment">*) 12 aug 2005: Initial release (C++, decoder only)</span></div>
+<div class="line"><a name="l01701"></a><span class="lineno"> 1701</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01702"></a><span class="lineno"> 1702</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01703"></a><span class="lineno"> 1703</span>&#160;<span class="comment">12. contact information</span></div>
+<div class="line"><a name="l01704"></a><span class="lineno"> 1704</span>&#160;<span class="comment">-----------------------</span></div>
+<div class="line"><a name="l01705"></a><span class="lineno"> 1705</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01706"></a><span class="lineno"> 1706</span>&#160;<span class="comment">Feel free to contact me with suggestions, problems, comments, ... concerning</span></div>
+<div class="line"><a name="l01707"></a><span class="lineno"> 1707</span>&#160;<span class="comment">LodePNG. If you encounter a PNG image that doesn&#39;t work properly with this</span></div>
+<div class="line"><a name="l01708"></a><span class="lineno"> 1708</span>&#160;<span class="comment">decoder, feel free to send it and I&#39;ll use it to find and fix the problem.</span></div>
+<div class="line"><a name="l01709"></a><span class="lineno"> 1709</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01710"></a><span class="lineno"> 1710</span>&#160;<span class="comment">My email address is (puzzle the account and domain together with an @ symbol):</span></div>
+<div class="line"><a name="l01711"></a><span class="lineno"> 1711</span>&#160;<span class="comment">Domain: gmail dot com.</span></div>
+<div class="line"><a name="l01712"></a><span class="lineno"> 1712</span>&#160;<span class="comment">Account: lode dot vandevenne.</span></div>
+<div class="line"><a name="l01713"></a><span class="lineno"> 1713</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01714"></a><span class="lineno"> 1714</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l01715"></a><span class="lineno"> 1715</span>&#160;<span class="comment">Copyright (c) 2005-2013 Lode Vandevenne</span></div>
+<div class="line"><a name="l01716"></a><span class="lineno"> 1716</span>&#160;<span class="comment">*/</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="astruct_lode_p_n_g_info_html"><div class="ttname"><a href="struct_lode_p_n_g_info.html">LodePNGInfo</a></div><div class="ttdef"><b>Definition:</b> lodepng.h:401</div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="astruct_lode_p_n_g_compress_settings_html"><div class="ttname"><a href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></div><div class="ttdef"><b>Definition:</b> lodepng.h:278</div></div>
+<div class="ttc" id="astruct_lode_p_n_g_encoder_settings_html"><div class="ttname"><a href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></div><div class="ttdef"><b>Definition:</b> lodepng.h:594</div></div>
+<div class="ttc" id="astruct_lode_p_n_g_decoder_settings_html"><div class="ttname"><a href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a></div><div class="ttdef"><b>Definition:</b> lodepng.h:512</div></div>
+<div class="ttc" id="astruct_lode_p_n_g_state_html"><div class="ttname"><a href="struct_lode_p_n_g_state.html">LodePNGState</a></div><div class="ttdef"><b>Definition:</b> lodepng.h:631</div></div>
+<div class="ttc" id="astruct_lode_p_n_g_decompress_settings_html"><div class="ttname"><a href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a></div><div class="ttdef"><b>Definition:</b> lodepng.h:250</div></div>
+<div class="ttc" id="astruct_lode_p_n_g_time_html"><div class="ttname"><a href="struct_lode_p_n_g_time.html">LodePNGTime</a></div><div class="ttdef"><b>Definition:</b> lodepng.h:389</div></div>
+<div class="ttc" id="astruct_lode_p_n_g_color_mode_html"><div class="ttname"><a href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a></div><div class="ttdef"><b>Definition:</b> lodepng.h:312</div></div>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<div class="title">log.hxx</div>  </div>
+</div><!--header-->
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXONA_LOG</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXONA_LOG</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;cstdio&gt;</span>  </div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ofstream.html">std::ofstream</a>;</div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160; </div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">std::map</a>;</div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160; </div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="preprocessor">#include &lt;mutex&gt;</span></div>
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+<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_log_html_a805517b44b61d2b5151a2f4794596a7e"><div class="ttname"><a href="class_log.html#a805517b44b61d2b5151a2f4794596a7e">Log::fatal</a></div><div class="ttdeci">static void fatal(const char *format,...)</div><div class="ttdoc">Logs a fatal message.</div><div class="ttdef"><b>Definition:</b> log.cxx:216</div></div>
+<div class="ttc" id="aclass_log_html_a044ee1254485cb519d0576dc71103f0a"><div class="ttname"><a href="class_log.html#a044ee1254485cb519d0576dc71103f0a">Log::debug</a></div><div class="ttdeci">static void debug(const char *format,...)</div><div class="ttdoc">Logs a debug message.</div><div class="ttdef"><b>Definition:</b> log.cxx:264</div></div>
+<div class="ttc" id="aclass_log_html_a4718a27c58db20d66ac3c511931d475b"><div class="ttname"><a href="class_log.html#a4718a27c58db20d66ac3c511931d475b">Log::restrict_to_rank</a></div><div class="ttdeci">static void restrict_to_rank(int32_t _restricted_rank)</div><div class="ttdoc">Specifies which MPI process to allow messages from.</div><div class="ttdef"><b>Definition:</b> log.cxx:105</div></div>
+<div class="ttc" id="aclass_log_html_a9bbfa4b8f4fb2262d914f00ba04dd6c6"><div class="ttname"><a href="class_log.html#a9bbfa4b8f4fb2262d914f00ba04dd6c6">Log::warning_no_header</a></div><div class="ttdeci">static void warning_no_header(const char *format,...)</div><div class="ttdoc">Logs a warning message.</div><div class="ttdef"><b>Definition:</b> log.cxx:312</div></div>
+<div class="ttc" id="aclass_log_html_a5eca5217a6fc23a54cff35ff12ad04f6"><div class="ttname"><a href="class_log.html#a5eca5217a6fc23a54cff35ff12ad04f6">Log::trace_no_header</a></div><div class="ttdeci">static void trace_no_header(const char *format,...)</div><div class="ttdoc">Logs a trace message.</div><div class="ttdef"><b>Definition:</b> log.cxx:348</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_log_html_a08b261dd43ff89110e602a3a61f6ec61"><div class="ttname"><a href="class_log.html#a08b261dd43ff89110e602a3a61f6ec61">Log::file_message_level</a></div><div class="ttdeci">static int32_t file_message_level</div><div class="ttdoc">Specifies which messages to log.</div><div class="ttdef"><b>Definition:</b> log.hxx:48</div></div>
+<div class="ttc" id="aclass_log_html_a477d1ab8cce3a2ef12cb8006fa3c6bf5"><div class="ttname"><a href="class_log.html#a477d1ab8cce3a2ef12cb8006fa3c6bf5">Log::warning</a></div><div class="ttdeci">static void warning(const char *format,...)</div><div class="ttdoc">Logs a warning message.</div><div class="ttdef"><b>Definition:</b> log.cxx:240</div></div>
+<div class="ttc" id="aclass_log_html_a633c6eafa442ecfb3b3322f89496e52e"><div class="ttname"><a href="class_log.html#a633c6eafa442ecfb3b3322f89496e52e">Log::std_message_level</a></div><div class="ttdeci">static int32_t std_message_level</div><div class="ttdoc">Specifies which messages to log.</div><div class="ttdef"><b>Definition:</b> log.hxx:41</div></div>
+<div class="ttc" id="aclass_log_html_a6183417026fe34b0d1494f1504b52b8f"><div class="ttname"><a href="class_log.html#a6183417026fe34b0d1494f1504b52b8f">Log::set_rank</a></div><div class="ttdeci">static void set_rank(int32_t _process_rank)</div><div class="ttdoc">Sets the MPI process rank for this Log.</div><div class="ttdef"><b>Definition:</b> log.cxx:101</div></div>
+<div class="ttc" id="aclass_log_html_addf4eb67a84c9ee39ed3028005f25e40"><div class="ttname"><a href="class_log.html#addf4eb67a84c9ee39ed3028005f25e40">Log::DEBUG</a></div><div class="ttdeci">static const int8_t DEBUG</div><div class="ttdoc">Specifies debug and above messages will be logged.</div><div class="ttdef"><b>Definition:</b> log.hxx:119</div></div>
+<div class="ttc" id="aclass_log_html_afe8e50d6e52f39d4ed931f13eb49af5f"><div class="ttname"><a href="class_log.html#afe8e50d6e52f39d4ed931f13eb49af5f">Log::output_files</a></div><div class="ttdeci">static map&lt; string, LogFile * &gt; output_files</div><div class="ttdoc">A map of human readable ids to output files which the log messages will be written to.</div><div class="ttdef"><b>Definition:</b> log.hxx:93</div></div>
+<div class="ttc" id="aclass_log_html"><div class="ttname"><a href="class_log.html">Log</a></div><div class="ttdef"><b>Definition:</b> log.hxx:35</div></div>
+<div class="ttc" id="aclass_log_file_html"><div class="ttname"><a href="class_log_file.html">LogFile</a></div><div class="ttdef"><b>Definition:</b> log.hxx:24</div></div>
+<div class="ttc" id="aclass_log_html_adb225c396180e0d8f73580e71eae6554"><div class="ttname"><a href="class_log.html#adb225c396180e0d8f73580e71eae6554">Log::info</a></div><div class="ttdeci">static void info(const char *format,...)</div><div class="ttdoc">Logs an info message.</div><div class="ttdef"><b>Definition:</b> log.cxx:252</div></div>
+<div class="ttc" id="aclass_log_html_aff6a4531e693fd53ad051c7fef28c6aa"><div class="ttname"><a href="class_log.html#aff6a4531e693fd53ad051c7fef28c6aa">Log::write_message</a></div><div class="ttdeci">static void write_message(bool print_header, int8_t message_level, const char *message_type, const char *format, va_list arguments)</div><div class="ttdoc">Potentially writes the message to either standard output or the log file if the message level is high...</div><div class="ttdef"><b>Definition:</b> log.cxx:150</div></div>
+<div class="ttc" id="aclass_log_html_a4249272125f8149b2d042101bcc6b49f"><div class="ttname"><a href="class_log.html#a4249272125f8149b2d042101bcc6b49f">Log::ALL</a></div><div class="ttdeci">static const int8_t ALL</div><div class="ttdoc">Specifies all messages will be logged.</div><div class="ttdef"><b>Definition:</b> log.hxx:121</div></div>
+<div class="ttc" id="aclass_log_html_a89f6eebb445913e66423614839225db2"><div class="ttname"><a href="class_log.html#a89f6eebb445913e66423614839225db2">Log::error</a></div><div class="ttdeci">static void error(const char *format,...)</div><div class="ttdoc">Logs an error message.</div><div class="ttdef"><b>Definition:</b> log.cxx:228</div></div>
+<div class="ttc" id="aclass_log_html_aec94f82d0ed91efcb398ce15f2f14a34"><div class="ttname"><a href="class_log.html#aec94f82d0ed91efcb398ce15f2f14a34">Log::max_header_length</a></div><div class="ttdeci">static int32_t max_header_length</div><div class="ttdoc">Specifies the maximum length for the message header.</div><div class="ttdef"><b>Definition:</b> log.hxx:58</div></div>
+<div class="ttc" id="athread_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/thread/thread.html">std::thread</a></div></div>
+<div class="ttc" id="aclass_log_html_ac3e898dc093679bb7d1e3a3f98872158"><div class="ttname"><a href="class_log.html#ac3e898dc093679bb7d1e3a3f98872158">Log::error_no_header</a></div><div class="ttdeci">static void error_no_header(const char *format,...)</div><div class="ttdoc">Logs an error message.</div><div class="ttdef"><b>Definition:</b> log.cxx:300</div></div>
+<div class="ttc" id="aclass_log_html_a47ec200a53bfc6b8b6a39bc91d5dbc86"><div class="ttname"><a href="class_log.html#a47ec200a53bfc6b8b6a39bc91d5dbc86">Log::restricted_rank</a></div><div class="ttdeci">static int32_t restricted_rank</div><div class="ttdoc">Defaults at -1, when set to a process rank (&gt;= 0) the Log will only print messages if its rank is the...</div><div class="ttdef"><b>Definition:</b> log.hxx:87</div></div>
+<div class="ttc" id="aclass_log_html_a4b4380a986ebf18e448221d78a236bc3"><div class="ttname"><a href="class_log.html#a4b4380a986ebf18e448221d78a236bc3">Log::info_no_header</a></div><div class="ttdeci">static void info_no_header(const char *format,...)</div><div class="ttdoc">Logs an info message.</div><div class="ttdef"><b>Definition:</b> log.cxx:324</div></div>
+<div class="ttc" id="aclass_log_html_a02c6c399678d6687f38c6600751aa2e7"><div class="ttname"><a href="class_log.html#a02c6c399678d6687f38c6600751aa2e7">Log::WARNING</a></div><div class="ttdeci">static const int8_t WARNING</div><div class="ttdoc">Specifies warning and above messages will be logged.</div><div class="ttdef"><b>Definition:</b> log.hxx:117</div></div>
+<div class="ttc" id="aclass_log_html_a70efafdaaf797f644bb24a8e1c7f5643"><div class="ttname"><a href="class_log.html#a70efafdaaf797f644bb24a8e1c7f5643">Log::INFO</a></div><div class="ttdeci">static const int8_t INFO</div><div class="ttdoc">Specifies info and above messages will be logged.</div><div class="ttdef"><b>Definition:</b> log.hxx:118</div></div>
+<div class="ttc" id="abasic_ofstream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ofstream.html">std::ofstream</a></div></div>
+<div class="ttc" id="aclass_log_html_a696a49a4d58146f0ee69be1562991e12"><div class="ttname"><a href="class_log.html#a696a49a4d58146f0ee69be1562991e12">Log::TRACE</a></div><div class="ttdeci">static const int8_t TRACE</div><div class="ttdoc">Specifies trace and above messages will be logged.</div><div class="ttdef"><b>Definition:</b> log.hxx:120</div></div>
+<div class="ttc" id="aclass_log_html_a6c4b9de38585df6c03defcbe0e420268"><div class="ttname"><a href="class_log.html#a6c4b9de38585df6c03defcbe0e420268">Log::debug_no_header</a></div><div class="ttdeci">static void debug_no_header(const char *format,...)</div><div class="ttdoc">Logs a debug message.</div><div class="ttdef"><b>Definition:</b> log.cxx:336</div></div>
+<div class="ttc" id="aclass_log_html_a44e61f1a4560b557bd8b3374cd87e0e3"><div class="ttname"><a href="class_log.html#a44e61f1a4560b557bd8b3374cd87e0e3">Log::NONE</a></div><div class="ttdeci">static const int8_t NONE</div><div class="ttdoc">Specifies no messages will be logged.</div><div class="ttdef"><b>Definition:</b> log.hxx:114</div></div>
+<div class="ttc" id="aclass_log_html_a92a5eb55bc8e480aa984d6d592f07d69"><div class="ttname"><a href="class_log.html#a92a5eb55bc8e480aa984d6d592f07d69">Log::parse_level_from_string</a></div><div class="ttdeci">static int8_t parse_level_from_string(string level)</div><div class="ttdef"><b>Definition:</b> log.cxx:48</div></div>
+<div class="ttc" id="aclass_log_html_a1cecca268a9c418480a0ac325303f7a0"><div class="ttname"><a href="class_log.html#a1cecca268a9c418480a0ac325303f7a0">Log::clear_rank_restriction</a></div><div class="ttdeci">static void clear_rank_restriction()</div><div class="ttdoc">Clears the MPI process rank restriction from messages allowing any process to write to the log (sets ...</div><div class="ttdef"><b>Definition:</b> log.cxx:109</div></div>
+<div class="ttc" id="aclass_log_html_afdfbb3c30e059607ccf10a6ef5e0de9a"><div class="ttname"><a href="class_log.html#afdfbb3c30e059607ccf10a6ef5e0de9a">Log::at_level</a></div><div class="ttdeci">static bool at_level(int8_t level)</div><div class="ttdoc">Determines if either output level (the file or standard output) level is above the level passed as a ...</div><div class="ttdef"><b>Definition:</b> log.cxx:212</div></div>
+<div class="ttc" id="amap_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/map.html">std::map</a></div></div>
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+<div class="ttc" id="aclass_log_html_ad2850dbb9d26c84c3fc2bcecc93493d6"><div class="ttname"><a href="class_log.html#ad2850dbb9d26c84c3fc2bcecc93493d6">Log::fatal_no_header</a></div><div class="ttdeci">static void fatal_no_header(const char *format,...)</div><div class="ttdoc">Logs a fatal message.</div><div class="ttdef"><b>Definition:</b> log.cxx:288</div></div>
+<div class="ttc" id="aclass_log_html_a20bd437aa24965f6e9650fd5e2d48923"><div class="ttname"><a href="class_log.html#a20bd437aa24965f6e9650fd5e2d48923">Log::write_to_file</a></div><div class="ttdeci">static bool write_to_file</div><div class="ttdoc">Specifies if the logs should also be written to a flie.</div><div class="ttdef"><b>Definition:</b> log.hxx:53</div></div>
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+<div class="ttc" id="amutex_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/thread/mutex.html">std::mutex</a></div></div>
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+<div class="ttc" id="ava_list_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/utility/variadic/va_list.html">va_list</a></div></div>
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+<div class="ttc" id="aclass_log_html_a18dc29ac4d511d8eab1bb9bc5771e7bf"><div class="ttname"><a href="class_log.html#a18dc29ac4d511d8eab1bb9bc5771e7bf">Log::output_directory</a></div><div class="ttdeci">static string output_directory</div><div class="ttdoc">Specifies which directory to write the log files to (if the logs are being writtten to a file).</div><div class="ttdef"><b>Definition:</b> log.hxx:69</div></div>
+<div class="ttc" id="aclass_log_html_a1e95d22090ba14b096609c67487f9761"><div class="ttname"><a href="class_log.html#a1e95d22090ba14b096609c67487f9761">Log::register_command_line_arguments</a></div><div class="ttdeci">static void register_command_line_arguments()</div><div class="ttdoc">Registers used command line arguments and instructions with the CommandLine class.</div><div class="ttdef"><b>Definition:</b> log.cxx:43</div></div>
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+  <div class="headertitle">
+<div class="title">lstm_node.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_LSTM_NODE_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_LSTM_NODE_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
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+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
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+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="preprocessor">#include &quot;common/random.hxx&quot;</span></div>
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+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &quot;rnn_node_interface.hxx&quot;</span></div>
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+<div class="line"><a name="l00018"></a><span class="lineno"><a class="line" href="class_l_s_t_m___node.html">   18</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_l_s_t_m___node.html">LSTM_Node</a> : <span class="keyword">public</span> <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> {</div>
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+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        <a class="code" href="class_l_s_t_m___node.html">LSTM_Node</a>(<span class="keywordtype">int</span> _innovation_number, <span class="keywordtype">int</span> _type, <span class="keywordtype">double</span> _depth);</div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;        ~<a class="code" href="class_l_s_t_m___node.html">LSTM_Node</a>();</div>
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+<li class="navelem"><a class="el" href="dir_41e1742e44e2de38b3bc91f993fed282.html">server</a></li>  </ul>
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">make_jobs.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXACT_MAKE_JOBS_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXACT_MAKE_JOBS_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &quot;cnn/exact.hxx&quot;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#define CUSHION 100</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#define WORKUNITS_TO_GENERATE 100</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="preprocessor">#define REPLICATION_FACTOR  1</span></div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="preprocessor">#define SLEEP_TIME 10</span></div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160; </div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keywordtype">bool</span> low_on_workunits();</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="keywordtype">void</span> make_jobs(<a class="code" href="class_e_x_a_c_t.html">EXACT</a> *exact, <span class="keywordtype">int</span> workunits_to_generate);</div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="keywordtype">void</span> init_work_generation(<span class="keywordtype">string</span> app_name);</div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160; </div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_e_x_a_c_t_html"><div class="ttname"><a href="class_e_x_a_c_t.html">EXACT</a></div><div class="ttdef"><b>Definition:</b> exact.hxx:32</div></div>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Getting Started and Prerequisites</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
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+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<div id="MSearchResultsWindow">
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+        name="MSearchResults" id="MSearchResults">
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+  <div class="headertitle">
+<div class="title">Getting Started and Prerequisites </div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><p>EXONA has been developed to compile using CMake, which should be installed before attempting to compile. To use the MPI version, a version of MPI (such as OpenMPI) should be installed. <a class="el" href="class_e_x_a_c_t.html">EXACT</a> currently requires libtiff and libpng The <a class="el" href="class_e_x_a_c_t.html">EXACT</a> algorithm can also checkpoint to a database, however this is not required. To enable this I recommend installing libmysql-dev via apt-get on Linux systems, or mysql via <a href="https://brew.sh">homebrew</a> on OSX. Other than that, EXACT/EXALT/EXAMM has no prerequesites other than c++11 compatible compiler.</p>
+<p>If you are using OSX, to set up the environment:</p>
+<div class="fragment"><div class="line">$ brew install cmake</div>
+<div class="line">$ brew install mysql</div>
+<div class="line">$ xcode-select --install</div>
+</div><!-- fragment --><p>To build:</p>
+<div class="fragment"><div class="line">~/exact $ mkdir build</div>
+<div class="line">~/exact $ cd build</div>
+<div class="line">~/exact/build $ cmake ..</div>
+<div class="line">~/exact/build $ make</div>
+</div><!-- fragment --><p>You may also want to have graphviz installed so you can generate images of the evolved neural networks. EXACT/EXALT/EXAMM will write out evolved genomes in a .gv (graphviz) format for this. For example, can generate a pdf from a gv file (assuming graphviz is installed with):</p>
+<div class="fragment"><div class="line">$ dot -Tpdf genome.gv -o genome.pdf</div>
+</div><!-- fragment --><h1><a class="anchor" id="autotoc_md1"></a>
+EXAMM: Evolutionary eXploration of Augmenting Memory Models and EXALT: Evolutionary eXploration of Augmenting LSTM Topologies</h1>
+<p>Source code for EXALT/EXAMM can be found in the rnn subdirectory. EXALT has been enhanced with the ability to utilize more recurrent memory cells and has been renamed <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>. The memory cells currently implemented are Delta-RNN, GRU, LSTM, MGU, and UGRNNs. Some example time series data has been provided as part of two publications on EXALT and <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>, which also provide implementation details:</p>
+<ol type="1">
+<li>Alex Ororbia, AbdElRahman ElSaid, and Travis Desell. <b><a href="https://dl.acm.org/citation.cfm?id=3321795">Investigating Recurrent Neural Network Memory Structures using Neuro-Evolution</a>.</b> <em>The Genetic and Evolutionary Computation Conference (GECCO 2019).</em> Prague, Czech Republic. July 8-12, 2019.</li>
+<li>AbdElRahman ElSaid, Steven Benson, Shuchita Patwardhan, David Stadem and Travis Desell. <b><a href="https://link.springer.com/chapter/10.1007/978-3-030-16692-2_33">Evolving Recurrent Neural Networks for Time Series Data Prediction of Coal Plant Parameters</a>.</b> <em>The 22nd International Conference on the Applications of Evolutionary Computation (EvoStar: EvoApps 2019).</em> Leipzig, Germany. April 24-26, 2019.</li>
+</ol>
+<p>These datasets can be found in the <em>datasets</em> directory, and provide example CSV files which you can use with <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>. <a class="el" href="class_e_x_a_m_m.html">EXAMM</a> can be run in two different ways, a multithreaded version:</p>
+<div class="fragment"><div class="line">./multithreaded/examm_mt --number_threads 9 --training_filenames ../datasets/2018_coal/burner_[0-9].csv --test_filenames ../datasets/2018_coal/burner_1[0-1].csv --time_offset 1 --input_parameter_names Conditioner_Inlet_Temp Conditioner_Outlet_Temp Coal_Feeder_Rate Primary_Air_Flow Primary_Air_Split System_Secondary_Air_Flow_Total Secondary_Air_Flow Secondary_Air_Split Tertiary_Air_Split Total_Comb_Air_Flow Supp_Fuel_Flow Main_Flm_Int --output_parameter_names Main_Flm_Int --number_islands 10 --population_size 10 --max_genomes 2000 --bp_iterations 10 --output_directory &quot;./test_output&quot; --possible_node_types simple UGRNN MGU GRU delta LSTM --std_message_level INFO --file_message_level INFO</div>
+</div><!-- fragment --><p>And a parallel version using MPI:</p>
+<div class="fragment"><div class="line">~/exact/build/ $ mpirun -np 9 ./mpi/examm_mpi --training_filenames ../datasets/2018_coal/burner_[0-9].csv --test_filenames ../datasets/2018_coal/burner_1[0-1].csv --time_offset 1 --input_parameter_names Conditioner_Inlet_Temp Conditioner_Outlet_Temp Coal_Feeder_Rate Primary_Air_Flow Primary_Air_Split System_Secondary_Air_Flow_Total Secondary_Air_Flow Secondary_Air_Split Tertiary_Air_Split Total_Comb_Air_Flow Supp_Fuel_Flow Main_Flm_Int --output_parameter_names Main_Flm_Int --number_islands 10 --population_size 10 --max_genomes 2000 --bp_iterations 10 --output_directory &quot;./test_output&quot; --possible_node_types simple UGRNN MGU GRU delta LSTM --std_message_level INFO --file_message_level INFO</div>
+</div><!-- fragment --><p>Which will run <a class="el" href="class_e_x_a_m_m.html">EXAMM</a> with 9 threads or 9 processes, respectively. Note that <a class="el" href="class_e_x_a_m_m.html">EXAMM</a> uses one thread/process as the master and this typically just waits on the results of backprop so you if you have 8 processors/cores available you can usually run <a class="el" href="class_e_x_a_m_m.html">EXAMM</a> with 9 processes/threads for better performance. A performance log of <a class="el" href="class_r_n_n.html">RNN</a> fitnesses will be exported into fitness_log.csv, as well as the best found RNNs into the specified output directory, in this case *./test_output*. You can control the level of message logging for standard output with <em>&ndash;std_message_level</em> (options are NONE, FATAL, ERROR, WARNING, INFO, DEBUG, TRACE and ALL) and message logging to files (which will be placed in the output directory) with <em>&ndash;file_message_level</em>. Separate logging files will be made for each thread/process.</p>
+<p>The aviation data can be run similarly, however it the data should be normalized first (which can be done with the <em>&ndash;normalize</em> command line parameter), e.g.:</p>
+<div class="fragment"><div class="line">./multithreaded/examm_mt --number_threads 9 --training_filenames ../datasets/2018_ngafid/flight_[0-7].csv --test_filenames ../datasets/2018_ngafid/flight_[8-9].csv --time_offset 1 --input_parameter_names &quot;AltAGL&quot; &quot;E1 CHT1&quot; &quot;E1 CHT2&quot; &quot;E1 CHT3&quot; &quot;E1 CHT4&quot; &quot;E1 EGT1&quot; &quot;E1 EGT2&quot; &quot;E1 EGT3&quot; &quot;E1 EGT4&quot; &quot;E1 OilP&quot; &quot;E1 OilT&quot; &quot;E1 RPM&quot; &quot;FQtyL&quot; &quot;FQtyR&quot; &quot;GndSpd&quot; &quot;IAS&quot; &quot;LatAc&quot; &quot;NormAc&quot; &quot;OAT&quot; &quot;Pitch&quot; &quot;Roll&quot; &quot;TAS&quot; &quot;volt1&quot; &quot;volt2&quot; &quot;VSpd&quot; &quot;VSpdG&quot; --output_parameter_names Pitch --number_islands 10 --population_size 10 --max_genomes 2000 --bp_iterations 10 --output_directory &quot;./test_output&quot; --possible_node_types simple UGRNN MGU GRU delta LSTM --normalize --std_message_level INFO --file_message_level INFO</div>
+</div><!-- fragment --><p>The <em>&ndash;time_offset</em> parameter specifies how many time steps in the future <a class="el" href="class_e_x_a_m_m.html">EXAMM</a> should predict for the output parameter(s). The <em>&ndash;number_islands</em> is the number of islands of populations that <a class="el" href="class_e_x_a_m_m.html">EXAMM</a> will use, and the <em>&ndash;population_size</em> parameter specifies how many individuals/genomes are in each island. The <em>&ndash;bp_iterations</em> specifies how many epochs/iterations backpropagation should be run for each generated <a class="el" href="class_r_n_n.html">RNN</a> genome.</p>
+<p>The</p>
+<h1><a class="anchor" id="autotoc_md2"></a>
+EXACT: Evolutionary Exploration of Augmenting Convolutional Topologies</h1>
+<p>This repository provides source code for the Evolutionary Exploration of Augmenting Convolutional Topologies algorithm. This algorithm progressively evolves convolutional neural networks for image classification problems. The algorithm is asychronous, which allows for easy multithreading and parallelization. Code is provided for running <a class="el" href="class_e_x_a_c_t.html">EXACT</a> as a BOINC volunteer computing project, on a cluster or supercomputer using MPI or on a desktop or laptop using threads.</p>
+<p>We've built and run <a class="el" href="class_e_x_a_c_t.html">EXACT</a> on both an Ubuntu Linux high performance computing cluser and OSX laptops and desktops. We have not tried it on Windows. If there are issues with the CMake scripts please let us know and we'll update them.</p>
+<p>If you want to set this up on your own BOINC volunteer computing project, we recommend sending us an email as this is a rather complicated process.</p>
+<p>For more information on <a class="el" href="class_e_x_a_c_t.html">EXACT</a> please see our following publications:</p>
+<ol type="1">
+<li>Travis Desell. <b><a href="https://arxiv.org/abs/1811.08286">Accelerating the Evolution of Convolutional Neural Networks with Node-Level Mutations and Epigenetic Weight Initialization</a>.</b> <em>arXiv: Neural and Evolutionary Computing (cs.NE).</em> November, 2018.</li>
+<li>Travis Desell. <b><a href="https://ieeexplore.ieee.org/document/8109119">Developing a Volunteer Computing Project to Evolve Convolutional Neural Networks and Their Hyperparameters</a>.</b> <em>The 13th IEEE International Conference on eScience (eScience 2017).</em> Auckland, New Zealand. October 24-27 2017.</li>
+</ol>
+<h2><a class="anchor" id="autotoc_md3"></a>
+Setting up Training and Testing Data</h2>
+<p>This version <a class="el" href="class_e_x_a_c_t.html">EXACT</a> is set up to run using the <a href="http://yann.lecun.com/exdb/mnist/">MNIST Handwritten Digits Dataset</a>. However it expects a different data format where the images and labels are combined. You can download the data and convert it as follows:</p>
+<div class="fragment"><div class="line">~/exact $ mkdir datasets</div>
+<div class="line">~/exact $ cd datasets</div>
+<div class="line"> </div>
+<div class="line">~/exact/datasets $ wget http://yann.lecun.com/exdb/mnist/train-images-idx3-ubyte.gz</div>
+<div class="line">~/exact/datasets $ wget http://yann.lecun.com/exdb/mnist/train-labels-idx1-ubyte.gz</div>
+<div class="line">~/exact/datasets $ wget http://yann.lecun.com/exdb/mnist/t10k-images-idx3-ubyte.gz</div>
+<div class="line">~/exact/datasets $ wget http://yann.lecun.com/exdb/mnist/t10k-labels-idx1-ubyte.gz</div>
+<div class="line"> </div>
+<div class="line">~/exact/datasets $ unzip train-images-idx3-ubyte.gz</div>
+<div class="line">~/exact/datasets $ unzip train-labels-idx1-ubyte.gz</div>
+<div class="line">~/exact/datasets $ unzip t10k-images-idx3-ubyte.gz</div>
+<div class="line">~/exact/datasets $ unzip t10k-labels-idx1-ubyte.gz</div>
+<div class="line"> </div>
+<div class="line">~/exact/datasets $ cd ../build</div>
+<div class="line">~/exact/build $ ./image_tools/convert_mnist_data ../datasets/train-images-idx3-ubyte ../datasets/train-labels-idx1-ubyte ../datasets/mnist_training_data.bin 60000</div>
+<div class="line">~/exact/build $ ./image_tools/convert_mnist_data ../datasets/t10k-images-idx3-ubyte ../datasets/t10k-labels-idx1-ubyte ../datasets/mnist_testing_data.bin 10000</div>
+</div><!-- fragment --><p>You can also split up either the training or test data to add a third dataset of validation images for more robust analysis, e.g., so you can train on one set, use the validation set to determine the best CNNs for <a class="el" href="class_e_x_a_c_t.html">EXACT</a> to keep, and then after the evolution process is completed you can test the best found genome(s) on the test set which has not been seen before. You can split up the MNIST training data into a 50k training set and 10k validation set as follows:</p>
+<div class="fragment"><div class="line">~/exact/build/ $ ./image_tools/split_mnist_data ../datasets/train-images-idx3-ubyte ../datasets/train-labels-idx1-ubyte ../datasets/mnist_train_50k.bin ../datasets/mnist_validation_10k.bin 60000 1000</div>
+</div><!-- fragment --><p>Where the usage is:</p>
+<div class="fragment"><div class="line">./image_tools/split_mnist_data &lt;mnist image file&gt; &lt;mnist label file&gt; &lt;output training file&gt; &lt;output validation file&gt; &lt;expected number of images&gt; &lt;validation images per label&gt;</div>
+</div><!-- fragment --><p>So this will take 1000 images of each type from the training data and put them into the specified validation file (<em>mnist_validation_10k.bin</em>) and the rest of the images will be in the training set (<em>mnist_train_50k.bin</em>).</p>
+<h2><a class="anchor" id="autotoc_md4"></a>
+Running EXACT</h2>
+<p>You can then run <a class="el" href="class_e_x_a_c_t.html">EXACT</a> in a similar manner to <a class="el" href="class_e_x_a_m_m.html">EXAMM</a>, either using threads or MPI. For the threaded version:</p>
+<div class="fragment"><div class="line">~/exact/build/ $ ./multithreaded/exact_mt --number_threads 9 --padding 2 --training_file ../datasets/mnist_train_50k.bin --validation_file ../datasets/mnist_validation_10k.bin  --testing_file ../datasets/mnist_testing_data.bin --population_size 30 --max_epochs 5 --use_sfmp 1 --use_node_operations 1 --max_genomes 1000 --output_directory ./test_exact --search_name &quot;test&quot; --reset_edges 0 --images_resize 50000</div>
+</div><!-- fragment --><p>And for the MPI version:</p>
+<div class="fragment"><div class="line">~/exact/build/ $ mpirun -np 9 ./mpi/exact_mpi --padding 2 --training_file ../datasets/mnist_train_50k.bin --validation_file ../datasets/mnist_validation_10k.bin  --testing_file ../datasets/mnist_testing_data.bin --population_size 30 --max_epochs 5 --use_sfmp 1 --use_node_operations 1 --max_genomes 1000 --output_directory ./test_exact --search_name &quot;test&quot; --reset_edges 0 --images_resize 50000</div>
+</div><!-- fragment --><p>Which will run <a class="el" href="class_e_x_a_c_t.html">EXACT</a> with 9 threads or processes, respectively. The <em>&ndash;use_sfmp</em> argument turns on or off scaled fractional max pooling (which allows for pooling operations between feature maps of any size), the <em>&ndash;use_node_operations</em> argument turns on or off node level mutations (see the <a class="el" href="class_e_x_a_c_t.html">EXACT</a> and <a class="el" href="class_e_x_a_m_m.html">EXAMM</a> papers), the <em>&ndash;reset_edges</em> parameter turns on or off Lamarckian weight evolution (turning it on will evolve and train networks faster) and the <em>&ndash;images_resize</em> parameter allows <a class="el" href="class_e_x_a_c_t.html">EXACT</a> to train CNNs on a subset of the training data to speed the evolution process (e.g., &ndash;images_resize 5000 would train each CNN on a different subset of 5k images from the training data, as opposed to the full 50k).</p>
+<h2><a class="anchor" id="autotoc_md5"></a>
+Example Genomes from GECCO 2017</h2>
+<p>Our submission to GECCO describes a set of best found genomes for the MNIST handwritten digits dataset. These can be found in the genomes subdirectory of the project. Please checkout the tag for the GECCO paper to use the version of <a class="el" href="class_e_x_a_c_t.html">EXACT</a> these CNN genome files were generated with:</p>
+<div class="fragment"><div class="line">git checkout -b exact_gecco gecco_2017</div>
+</div><!-- fragment --><p>After compiling this version and setting up the MNIST training and testing data as described in the previous section, these genomes can be run over the training and testing data for validation as follows:</p>
+<div class="fragment"><div class="line">~/exact/build/ $ ./tests/evaluate_cnn --training_data ../datasets/mnist_training_data.bin --testing_data ../datasets/mnist_testing_data.bin --genome_file ../genomes/genome_46823</div>
+<div class="line">~/exact/build/ $ ./tests/evaluate_cnn --training_data ../datasets/mnist_training_data.bin --testing_data ../datasets/mnist_testing_data.bin --genome_file ../genomes/genome_57302</div>
+<div class="line">~/exact/build/ $ ./tests/evaluate_cnn --training_data ../datasets/mnist_training_data.bin --testing_data ../datasets/mnist_testing_data.bin --genome_file ../genomes/genome_59455</div>
+<div class="line">~/exact/build/ $ ./tests/evaluate_cnn --training_data ../datasets/mnist_training_data.bin --testing_data ../datasets/mnist_testing_data.bin --genome_file ../genomes/genome_59920</div>
+</div><!-- fragment --> </div></div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+ @licstart  The following is the entire license notice for the
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+ Copyright (C) 1997-2017 by Dimitri van Heesch
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+ This program is free software; you can redistribute it and/or modify
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+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
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+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">mgu_node.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_MGU_NODE_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_MGU_NODE_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160; </div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160; </div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="preprocessor">#include &quot;common/random.hxx&quot;</span></div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160; </div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &quot;rnn_node_interface.hxx&quot;</span></div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160; </div>
+<div class="line"><a name="l00018"></a><span class="lineno"><a class="line" href="class_m_g_u___node.html">   18</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_m_g_u___node.html">MGU_Node</a> : <span class="keyword">public</span> <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> {</div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;        <span class="keywordtype">double</span> fw;</div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;        <span class="keywordtype">double</span> fu;</div>
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+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;        <span class="keywordtype">double</span> hw;</div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;        <span class="keywordtype">double</span> hu;</div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;        <span class="keywordtype">double</span> h_bias;</div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160; </div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_fw;</div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_fu;</div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_f_bias;</div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_hw;</div>
+<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_hu;</div>
+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_h_bias;</div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160; </div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_h_prev;</div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160; </div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> f;</div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> ld_f;</div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> h_tanh;</div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> ld_h_tanh;</div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160; </div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160; </div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;        <a class="code" href="class_m_g_u___node.html">MGU_Node</a>(<span class="keywordtype">int</span> _innovation_number, <span class="keywordtype">int</span> _layer_type, <span class="keywordtype">double</span> _depth);</div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;        ~<a class="code" href="class_m_g_u___node.html">MGU_Node</a>();</div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160; </div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;        <span class="keywordtype">void</span> initialize_lamarckian(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="code" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, <span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma);</div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;        <span class="keywordtype">void</span> initialize_xavier(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng1_1, <span class="keywordtype">double</span> range);</div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;        <span class="keywordtype">void</span> initialize_kaiming(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="code" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, <span class="keywordtype">double</span> range);</div>
+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;        <span class="keywordtype">void</span> initialize_uniform_random(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng);</div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160; </div>
+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;        <span class="keywordtype">double</span> get_gradient(<span class="keywordtype">string</span> gradient_name);</div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;        <span class="keywordtype">void</span> print_gradient(<span class="keywordtype">string</span> gradient_name);</div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160; </div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;        <span class="keywordtype">void</span> input_fired(<span class="keywordtype">int</span> time, <span class="keywordtype">double</span> incoming_output);</div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160; </div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;        <span class="keywordtype">void</span> try_update_deltas(<span class="keywordtype">int</span> time);</div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;        <span class="keywordtype">void</span> error_fired(<span class="keywordtype">int</span> time, <span class="keywordtype">double</span> error);</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;        <span class="keywordtype">void</span> output_fired(<span class="keywordtype">int</span> time, <span class="keywordtype">double</span> delta);</div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160; </div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;        uint32_t get_number_weights() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160; </div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;        <span class="keywordtype">void</span> get_weights(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;        <span class="keywordtype">void</span> set_weights(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters);</div>
+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160; </div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;        <span class="keywordtype">void</span> get_weights(uint32_t &amp;offset, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;        <span class="keywordtype">void</span> set_weights(uint32_t &amp;offset, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters);</div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160; </div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;        <span class="keywordtype">void</span> get_gradients(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;gradients);</div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160; </div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        <span class="keywordtype">void</span> reset(<span class="keywordtype">int</span> _series_length);</div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160; </div>
+<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;        <span class="keywordtype">void</span> write_to_stream(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out);</div>
+<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160; </div>
+<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* copy() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160; </div>
+<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_r_n_n___edge.html">RNN_Edge</a>;</div>
+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160; </div>
+<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;};</div>
+<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_m_g_u___node_html"><div class="ttname"><a href="class_m_g_u___node.html">MGU_Node</a></div><div class="ttdef"><b>Definition:</b> mgu_node.hxx:18</div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
+<div class="ttc" id="aclass_normal_distribution_html"><div class="ttname"><a href="class_normal_distribution.html">NormalDistribution</a></div><div class="ttdef"><b>Definition:</b> random.hxx:19</div></div>
+<div class="ttc" id="auniform_real_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a></div></div>
+<div class="ttc" id="abasic_ostream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a></div></div>
+<div class="ttc" id="aclass_r_n_n___node___interface_html"><div class="ttname"><a href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></div><div class="ttdef"><b>Definition:</b> rnn_node_interface.hxx:133</div></div>
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+  <ul>
+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">min_max_heap.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="keyword">inline</span> uint32_t log2(uint32_t x) {</div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;  <span class="comment">// This won&#39;t work on non x86 platforms</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;  <span class="comment">// https://stackoverflow.com/questions/994593/how-to-do-an-integer-log2-in-c</span></div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#if defined(__x86_64__) || defined(__i386__)</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;    uint32_t y;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;    <span class="keyword">asm</span> ( <span class="stringliteral">&quot;\tbsr %1, %0\n&quot;</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;        : <span class="stringliteral">&quot;=r&quot;</span>(y)</div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;        : <span class="stringliteral">&quot;r&quot;</span> (x)</div>
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+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160; </div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;    <span class="keyword">typedef</span> <span class="keyword">typename</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector&lt;T&gt;::const_iterator</a> const_iterator;</div>
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+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;        <span class="keywordflow">if</span> (less_than(heap[z], heap[z_grandparent]) ^ max_level) {</div>
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+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;            trickle_up_inner&lt;max_level&gt;(z_grandparent);</div>
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+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;                trickle_up_inner&lt;true&gt;(z_parent);</div>
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+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;                trickle_up_inner&lt;false&gt;(z_parent);</div>
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+<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;                trickle_up_inner&lt;true&gt;(z);</div>
+<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;            }</div>
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+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160; </div>
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+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;        uint32_t right = left + 1;</div>
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+<div class="ttc" id="aunderflow_error_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/error/underflow_error.html">std::underflow_error</a></div></div>
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+<div class="ttc" id="aswap_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/algorithm/swap.html">std::swap</a></div><div class="ttdeci">T swap(T... args)</div></div>
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+<li class="navelem"><a class="el" href="dir_5886800866fd6099dc756e063000bcd7.html">image_tools</a></li>  </ul>
+</div>
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+  <div class="headertitle">
+<div class="title">mosaic_image_set.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef MOSAIC_IMAGE_SET_HXX</span></div>
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+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;        <span class="keywordtype">int</span> get_class_size(<span class="keywordtype">int</span> i) <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;        <span class="keywordtype">int</span> get_number_large_images() <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <span class="keywordtype">int</span> get_image_channels() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        <span class="keywordtype">int</span> get_image_width() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;        <span class="keywordtype">int</span> get_image_height() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160; </div>
+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;        <span class="keywordtype">int</span> get_large_image_channels(<span class="keywordtype">int</span> image) <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160; </div>
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+<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160; </div>
+<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;        <span class="keywordtype">float</span> get_channel_avg(<span class="keywordtype">int</span> channel) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160; </div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;        <span class="keywordtype">float</span> get_channel_std_dev(<span class="keywordtype">int</span> channel) <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;        <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a>&amp; get_std_dev() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160; </div>
+<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;        <span class="keywordtype">void</span> normalize();</div>
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+<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;        <a class="code" href="class_large_image.html">LargeImage</a>* copy_image(<span class="keywordtype">int</span> i) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160; </div>
+<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;        <span class="keywordtype">void</span> set_alpha(<span class="keywordtype">int</span> i, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;float&gt;</a> &gt; &amp;_alpha);</div>
+<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;        <span class="keywordtype">void</span> set_alpha(<span class="keywordtype">int</span> i, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;uint8_t&gt;</a> &gt; &amp;_alpha);</div>
+<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;};</div>
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+<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160; </div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_point_html"><div class="ttname"><a href="class_point.html">Point</a></div><div class="ttdef"><b>Definition:</b> mosaic_image_set.hxx:21</div></div>
+<div class="ttc" id="aclass_multi_images_interface_html"><div class="ttname"><a href="class_multi_images_interface.html">MultiImagesInterface</a></div><div class="ttdef"><b>Definition:</b> image_set_interface.hxx:52</div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_large_image_html"><div class="ttname"><a href="class_large_image.html">LargeImage</a></div><div class="ttdef"><b>Definition:</b> large_image_set.hxx:20</div></div>
+<div class="ttc" id="abasic_ostream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a></div></div>
+<div class="ttc" id="aclass_mosaic_images_html"><div class="ttname"><a href="class_mosaic_images.html">MosaicImages</a></div><div class="ttdef"><b>Definition:</b> mosaic_image_set.hxx:51</div></div>
+<div class="ttc" id="aclass_rectangle_html"><div class="ttname"><a href="class_rectangle.html">Rectangle</a></div><div class="ttdef"><b>Definition:</b> mosaic_image_set.hxx:39</div></div>
+<div class="ttc" id="aclass_line_html"><div class="ttname"><a href="class_line.html">Line</a></div><div class="ttdef"><b>Definition:</b> mosaic_image_set.hxx:29</div></div>
+<div class="ttc" id="abasic_ifstream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">std::ifstream</a></div></div>
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: plot_multi_time_series Namespace Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#var-members">Variables</a>  </div>
+  <div class="headertitle">
+<div class="title">plot_multi_time_series Namespace Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
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+&#160;</td><td class="memItemRight" valign="bottom"><b>csv_filename</b> = sys.argv[1]</td></tr>
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+&#160;</td><td class="memItemRight" valign="bottom"><b>parameter_name</b> = sys.argv[2]</td></tr>
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+&#160;</td><td class="memItemRight" valign="bottom"><b>offsets</b> = sys.argv[5:]</td></tr>
+<tr class="separator:a7dc670c7b7bfa2e141cf6d139b60c1aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+&#160;</td><td class="memItemRight" valign="bottom"><b>values</b> = genfromtxt(csv_filename, delimiter=&quot;,&quot;)</td></tr>
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+&#160;</td><td class="memItemRight" valign="bottom"><b>rows</b> = len(values)</td></tr>
+<tr class="separator:aa698bc6b1ecc18309117c6adbc11d76c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aec8d4ebcb56e41ffc414583034915951"><td class="memItemLeft" align="right" valign="top"><a id="aec8d4ebcb56e41ffc414583034915951"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>cols</b> = len(values[0])</td></tr>
+<tr class="separator:aec8d4ebcb56e41ffc414583034915951"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0a178be487d773ac674426e6c9048a74"><td class="memItemLeft" align="right" valign="top"><a id="a0a178be487d773ac674426e6c9048a74"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>figsize</b></td></tr>
+<tr class="separator:a0a178be487d773ac674426e6c9048a74"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7327695ce7e1f3f6b0a8ac72f329d86b"><td class="memItemLeft" align="right" valign="top"><a id="a7327695ce7e1f3f6b0a8ac72f329d86b"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>label</b></td></tr>
+<tr class="separator:a7327695ce7e1f3f6b0a8ac72f329d86b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a612556db538d7e149f21512f77799395"><td class="memItemLeft" align="right" valign="top"><a id="a612556db538d7e149f21512f77799395"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>linewidth</b></td></tr>
+<tr class="separator:a612556db538d7e149f21512f77799395"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a444969616e4eb0a685ce5d5f096a463f"><td class="memItemLeft" align="right" valign="top"><a id="a444969616e4eb0a685ce5d5f096a463f"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>loc</b></td></tr>
+<tr class="separator:a444969616e4eb0a685ce5d5f096a463f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a68da059582342c21aa9c664534182f7b"><td class="memItemLeft" align="right" valign="top"><a id="a68da059582342c21aa9c664534182f7b"></a>
+&#160;</td><td class="memItemRight" valign="bottom"><b>bbox_inches</b></td></tr>
+<tr class="separator:a68da059582342c21aa9c664534182f7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><pre class="fragment">usage examples:
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/net_plant_heat_rate_predictions.csv "Net Plant Heat Rate" "Hours" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/net_plant_heat_rate_multi.png 1 2 4 8
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/nose_gas_temperature_predictons.csv "Nose Gas Temperature" "Hours" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/nose_gas_temperature_multi.png 1 2 4 8
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_extra_3.csv "Flame Intensity (Plant ~ Fuel)" "Minutes" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_extra_3.png 1 15 30 60 120 240 480
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_plant_fuel_3.csv "Flame Intensity (Plant + Fuel)" "Minutes" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_plant_fuel_3.png 1 15 30 60 120 240 480
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_plant_3.csv "Flame Intensity (Plant Only)" "Minutes" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_plant_3.png 1 15 30 60 120 240 480</pre> </div></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+++ b/docs/html/namespaces.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Namespace List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
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+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  </td>
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+ </tbody>
+</table>
+</div>
+<!-- end header part -->
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+<script type="text/javascript">
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+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">neat_speciation_strategy.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_NEAT_SPECIATION_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_NEAT_SPECIATION_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;functional&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">std::function</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160; </div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160; </div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="preprocessor">#include &quot;species.hxx&quot;</span></div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &quot;rnn_genome.hxx&quot;</span></div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &quot;speciation_strategy.hxx&quot;</span></div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160; </div>
+<div class="line"><a name="l00018"></a><span class="lineno"><a class="line" href="class_neat_speciation_strategy.html">   18</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a> : <span class="keyword">public</span> <a class="code" href="class_speciation_strategy.html">SpeciationStrategy</a> {</div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00020"></a><span class="lineno"><a class="line" href="class_neat_speciation_strategy.html#a8c33c9c76990e80839167c2791773bfd">   20</a></span>&#160;        int32_t <a class="code" href="class_neat_speciation_strategy.html#a8c33c9c76990e80839167c2791773bfd">generation_species</a>; </div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;        int32_t species_count; </div>
+<div class="line"><a name="l00022"></a><span class="lineno"><a class="line" href="class_neat_speciation_strategy.html#aa9cf3794cccbfabb1d4e32897bf3a965">   22</a></span>&#160;        int32_t <a class="code" href="class_neat_speciation_strategy.html#aa9cf3794cccbfabb1d4e32897bf3a965">population_not_improving_count</a>;</div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;        <span class="keywordtype">double</span> species_threshold;</div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;        <span class="keywordtype">double</span> fitness_threshold;</div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;        <span class="keywordtype">double</span> neat_c1; </div>
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+<div class="line"><a name="l00029"></a><span class="lineno"><a class="line" href="class_neat_speciation_strategy.html#ae212edf21f96938c934ad7f824f5d4d7">   29</a></span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_neat_speciation_strategy.html#ae212edf21f96938c934ad7f824f5d4d7">intra_island_crossover_rate</a>; </div>
+<div class="line"><a name="l00030"></a><span class="lineno"><a class="line" href="class_neat_speciation_strategy.html#ae407ee52a926c60746041987e60f1ecd">   30</a></span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_neat_speciation_strategy.html#ae407ee52a926c60746041987e60f1ecd">inter_island_crossover_rate</a>; </div>
+<div class="line"><a name="l00032"></a><span class="lineno"><a class="line" href="class_neat_speciation_strategy.html#aa2ecd78ba30f3cc72d2bf1367d5899bc">   32</a></span>&#160;        int32_t <a class="code" href="class_neat_speciation_strategy.html#aa2ecd78ba30f3cc72d2bf1367d5899bc">generated_genomes</a>; </div>
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+<div class="line"><a name="l00035"></a><span class="lineno"><a class="line" href="class_neat_speciation_strategy.html#ab991acafcd0032a3b7b54feae384414d">   35</a></span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *<a class="code" href="class_neat_speciation_strategy.html#ab991acafcd0032a3b7b54feae384414d">minimal_genome</a>; </div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;        int32_t max_genomes;</div>
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+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* global_best_genome;</div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160; </div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;        <a class="code" href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a>( <span class="keywordtype">double</span> _mutation_rate, <span class="keywordtype">double</span> _intra_island_crossover_rate, </div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;                                <span class="keywordtype">double</span> _inter_island_crossover_rate, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *_seed_genome,</div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;                                int32_t _max_genomes, <span class="keywordtype">double</span> _species_threshold, <span class="keywordtype">double</span> _fitness_threshold,</div>
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+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;        int32_t <a class="code" href="class_neat_speciation_strategy.html#af7e48fd1afb5a9c1b422ad251366263e">get_generated_genomes</a>() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160; </div>
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+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160; </div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_neat_speciation_strategy.html#a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99">get_best_fitness</a>();</div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160; </div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_neat_speciation_strategy.html#acbd3eaa05db725de60074276cd0bb449">get_worst_fitness</a>();</div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160; </div>
+<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* <a class="code" href="class_neat_speciation_strategy.html#aecf62aeba94c1f8d786215c10ea4774b">get_best_genome</a>();</div>
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+<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* get_global_best_genome();</div>
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+<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;        </div>
+<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;        <span class="keywordtype">double</span> get_distance(<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* g1, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* g2);</div>
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+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
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+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
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+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
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+<li class="navelem"><a class="el" href="dir_377bcd34c68cb9858f831db88dc7fd3f.html">cnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">pooling.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXACT_POOLING_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXACT_POOLING_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="keywordtype">void</span> update_offset(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;pools, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;offset);</div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keywordtype">void</span> initialize_pools(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;pools, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;offset, <span class="keywordtype">int</span> input_size, <span class="keywordtype">int</span> output_size);</div>
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+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160; </div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keywordtype">void</span> pool_forward(<span class="keyword">const</span> <span class="keywordtype">float</span>* input, <span class="keywordtype">float</span> scale, <span class="keywordtype">float</span> *pool_gradients, <span class="keywordtype">float</span>* output, int32_t batch_size, int32_t input_size_y, int32_t input_size_x, int32_t output_size_y, int32_t output_size_x, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;y_pools, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;x_pools, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;y_pool_offset, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;x_pool_offset, minstd_rand0 &amp;generator, <span class="keywordtype">bool</span> training, <span class="keywordtype">bool</span> max_pooling);</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="keywordtype">void</span> pool_forward_ry(<span class="keyword">const</span> <span class="keywordtype">float</span>* input, <span class="keywordtype">float</span> scale, <span class="keywordtype">float</span> *pool_gradients, <span class="keywordtype">float</span>* output, int32_t batch_size, int32_t input_size_y, int32_t input_size_x, int32_t output_size_y, int32_t output_size_x, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;y_pools, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;x_pools, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;y_pool_offset, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;x_pool_offset, minstd_rand0 &amp;generator, <span class="keywordtype">bool</span> training, <span class="keywordtype">bool</span> max_pooling);</div>
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+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">propagation.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef CNN_PROPAGATION_H</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define CNN_PROPAGATION_H</span></div>
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+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keywordtype">void</span> prop_forward(<span class="keyword">const</span> <span class="keywordtype">float</span>* input, <span class="keyword">const</span> <span class="keywordtype">float</span>* weights, <span class="keywordtype">float</span>* output, int32_t batch_size, int32_t input_size_y, int32_t input_size_x, int32_t filter_y, int32_t filter_x, int32_t output_size_y, int32_t output_size_x);</div>
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+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keywordtype">void</span> prop_forward_ry(<span class="keyword">const</span> <span class="keywordtype">float</span>* input, <span class="keyword">const</span> <span class="keywordtype">float</span>* weights, <span class="keywordtype">float</span>* output, int32_t batch_size, int32_t input_size_y, int32_t input_size_x, int32_t filter_y, int32_t filter_x, int32_t output_size_y, int32_t output_size_x);</div>
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+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXACT_RANDOM_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXACT_RANDOM_HXX</span></div>
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+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_RANDOM_DAG_NODE_HXX</span></div>
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+<div class="line"><a name="l00023"></a><span class="lineno"><a class="line" href="class_r_a_n_d_o_m___d_a_g___node.html">   23</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a> : <span class="keyword">public</span> <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>{</div>
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+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;        <span class="comment">// starting node 0</span></div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;        <span class="keywordtype">double</span> rw;</div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;        <span class="keywordtype">double</span> zw;</div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;        </div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;        <span class="comment">// weights for other nodes</span></div>
+<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> weights;</div>
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+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160; </div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;        <span class="comment">// gradients of starting node 0</span></div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_zw;</div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_rw;</div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160; </div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;        <span class="comment">// gradients of other nodes </span></div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;vector&lt;double&gt;</a>&gt; d_weights;</div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;        </div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;        <span class="comment">// gradient of prev output</span></div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_h_prev;</div>
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+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;        <span class="comment">// output of edge between node with weight wj from node with weight wi  </span></div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;vector&lt;double&gt;</a>&gt; Nodes;</div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;        <span class="comment">// derivative of edge between node with weight wj from node with weight wi  </span></div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;vector&lt;double&gt;</a>&gt; l_Nodes;</div>
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+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;        </div>
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+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160; </div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;        <a class="code" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>(<span class="keywordtype">int</span> _innovation_number, <span class="keywordtype">int</span> _type, <span class="keywordtype">double</span> _depth);</div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;        ~<a class="code" href="class_r_a_n_d_o_m___d_a_g___node.html">RANDOM_DAG_Node</a>();</div>
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+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;        <span class="keywordtype">void</span> initialize_lamarckian(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="code" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, <span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma);</div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;        <span class="keywordtype">void</span> initialize_xavier(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng1_1, <span class="keywordtype">double</span> range);</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;        <span class="keywordtype">void</span> initialize_kaiming(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="code" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, <span class="keywordtype">double</span> range);</div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;        <span class="keywordtype">void</span> initialize_uniform_random(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng);</div>
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+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;        <span class="keywordtype">double</span> get_gradient(<span class="keywordtype">string</span> gradient_name);</div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;        <span class="keywordtype">void</span> print_gradient(<span class="keywordtype">string</span> gradient_name);</div>
+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160; </div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;        <span class="keywordtype">double</span> activation(<span class="keywordtype">double</span> value, <span class="keywordtype">int</span> act_operator);</div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;        <span class="keywordtype">double</span> activation_derivative(<span class="keywordtype">double</span> value, <span class="keywordtype">double</span> input, <span class="keywordtype">int</span> act_operator);</div>
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+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        <span class="keywordtype">void</span> try_update_deltas(<span class="keywordtype">int</span> time);</div>
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+<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;        <span class="keywordtype">void</span> output_fired(<span class="keywordtype">int</span> time, <span class="keywordtype">double</span> delta);</div>
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+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;        <span class="keywordtype">void</span> set_weights(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters);</div>
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+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;        <span class="keywordtype">void</span> reset(<span class="keywordtype">int</span> _series_length);</div>
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+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;        <span class="keywordtype">void</span> write_to_stream(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out);</div>
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+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_RNN_GENOME_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_RNN_GENOME_HXX</span></div>
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+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
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+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
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+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160; </div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &quot;rnn_node_interface.hxx&quot;</span></div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="preprocessor">#include &quot;rnn_edge.hxx&quot;</span></div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &quot;rnn_recurrent_edge.hxx&quot;</span></div>
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+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &quot;time_series/time_series.hxx&quot;</span></div>
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+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160; </div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> input_nodes;</div>
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+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160; </div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> nodes;</div>
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+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160; </div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;        <a class="code" href="class_r_n_n.html">RNN</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> &amp;_nodes, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Edge*&gt;</a> &amp;_edges, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names);</div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;        <a class="code" href="class_r_n_n.html">RNN</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> &amp;_nodes, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Edge*&gt;</a> &amp;_edges, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Recurrent_Edge*&gt;</a> &amp;_recurrent_edges, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names);</div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;        ~<a class="code" href="class_r_n_n.html">RNN</a>();</div>
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+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;        <span class="keywordtype">void</span> fix_parameter_orders(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names);</div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;        <span class="keywordtype">void</span> validate_parameters(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names);</div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160; </div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;        <span class="keywordtype">int</span> get_number_nodes();</div>
+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;        <span class="keywordtype">int</span> get_number_edges();</div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160; </div>
+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* get_node(<span class="keywordtype">int</span> i);</div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;        <a class="code" href="class_r_n_n___edge.html">RNN_Edge</a>* get_edge(<span class="keywordtype">int</span> i);</div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160; </div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;        <span class="keywordtype">void</span> forward_pass(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;series_data, <span class="keywordtype">bool</span> using_dropout, <span class="keywordtype">bool</span> training, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;        <span class="keywordtype">void</span> backward_pass(<span class="keywordtype">double</span> error, <span class="keywordtype">bool</span> using_dropout, <span class="keywordtype">bool</span> training, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160; </div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160; </div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_r_n_n.html#aa5fb8d612f560a05bfa188453578c1a2">calculate_error_softmax</a>(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected_outputs);</div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;        <span class="keywordtype">double</span> calculate_error_mse(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected_outputs);</div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        <span class="keywordtype">double</span> calculate_error_mae(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected_outputs);</div>
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+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;        </div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        </div>
+<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_r_n_n.html#a7245cfe333987f29d59dd1c1442391ec">prediction_softmax</a>(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;series_data, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected_outputs, <span class="keywordtype">bool</span> using_dropout, <span class="keywordtype">bool</span> training, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;        <span class="keywordtype">double</span> prediction_mse(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;series_data, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected_outputs, <span class="keywordtype">bool</span> using_dropout, <span class="keywordtype">bool</span> training, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;        <span class="keywordtype">double</span> prediction_mae(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;series_data, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected_outputs, <span class="keywordtype">bool</span> using_dropout, <span class="keywordtype">bool</span> training, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160; </div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160; </div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> get_predictions(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;series_data, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected_outputs, <span class="keywordtype">bool</span> usng_dropout, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160; </div>
+<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;        <span class="keywordtype">void</span> write_predictions(<span class="keywordtype">string</span> output_filename, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;series_data, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected_outputs, <a class="code" href="class_time_series_sets.html">TimeSeriesSets</a> *time_series_sets, <span class="keywordtype">bool</span> using_dropout, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;        <span class="keywordtype">void</span> write_predictions(<span class="keywordtype">string</span> output_filename, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;output_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;series_data, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected_outputs, <a class="code" href="class_corpus.html">Corpus</a> *word_series_sets, <span class="keywordtype">bool</span> using_dropout, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160; </div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;        <span class="keywordtype">void</span> initialize_randomly();</div>
+<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;        <span class="keywordtype">void</span> get_weights(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters);</div>
+<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;        <span class="keywordtype">void</span> set_weights(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters);</div>
+<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;        <span class="keywordtype">void</span> enable_use_regression(<span class="keywordtype">bool</span> _use_regression);</div>
+<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160; </div>
+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        uint32_t get_number_weights();</div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160; </div>
+<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160; </div>
+<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_r_n_n.html#aad5f51508b5cb978a6343e3234bb8892">get_analytic_gradient</a>(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;test_parameters, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;inputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;outputs, <span class="keywordtype">double</span> &amp;mse, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;analytic_gradient, <span class="keywordtype">bool</span> using_dropout, <span class="keywordtype">bool</span> training, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;        <span class="keywordtype">void</span> get_empirical_gradient(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;test_parameters, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;inputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;outputs, <span class="keywordtype">double</span> &amp;mae, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;empirical_gradient, <span class="keywordtype">bool</span> using_dropout, <span class="keywordtype">bool</span> training, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160; </div>
+<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;        <span class="comment">//RNN* copy();</span></div>
+<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160; </div>
+<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;        <span class="keyword">friend</span> <span class="keywordtype">void</span> get_mse(<a class="code" href="class_r_n_n.html">RNN</a>* genome, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected, <span class="keywordtype">double</span> &amp;mse, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;deltas);</div>
+<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;        <span class="keyword">friend</span> <span class="keywordtype">void</span> get_mae(<a class="code" href="class_r_n_n.html">RNN</a>* genome, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected, <span class="keywordtype">double</span> &amp;mae, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;deltas);</div>
+<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;};</div>
+<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160; </div>
+<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_r_n_n_html_a17b9ce91b0ad9f0848f296021e5acd5f"><div class="ttname"><a href="class_r_n_n.html#a17b9ce91b0ad9f0848f296021e5acd5f">RNN::use_regression</a></div><div class="ttdeci">bool use_regression</div><div class="ttdoc">Specifies whether to use the regression or not.</div><div class="ttdef"><b>Definition:</b> rnn.hxx:32</div></div>
+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_r_n_n_html_a7245cfe333987f29d59dd1c1442391ec"><div class="ttname"><a href="class_r_n_n.html#a7245cfe333987f29d59dd1c1442391ec">RNN::prediction_softmax</a></div><div class="ttdeci">double prediction_softmax(const vector&lt; vector&lt; double &gt; &gt; &amp;series_data, const vector&lt; vector&lt; double &gt; &gt; &amp;expected_outputs, bool using_dropout, bool training, double dropout_probability)</div><div class="ttdoc">Calls the calculate_error_softmax after the forward pass across the rnn genome.</div><div class="ttdef"><b>Definition:</b> rnn.cxx:491</div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_r_n_n_html_aad5f51508b5cb978a6343e3234bb8892"><div class="ttname"><a href="class_r_n_n.html#aad5f51508b5cb978a6343e3234bb8892">RNN::get_analytic_gradient</a></div><div class="ttdeci">void get_analytic_gradient(const vector&lt; double &gt; &amp;test_parameters, const vector&lt; vector&lt; double &gt; &gt; &amp;inputs, const vector&lt; vector&lt; double &gt; &gt; &amp;outputs, double &amp;mse, vector&lt; double &gt; &amp;analytic_gradient, bool using_dropout, bool training, double dropout_probability)</div><div class="ttdoc">Updates the analytic gradients after the forward pass across the rnn genome and the backward pass seq...</div><div class="ttdef"><b>Definition:</b> rnn.cxx:633</div></div>
+<div class="ttc" id="aclass_r_n_n_html_aa5fb8d612f560a05bfa188453578c1a2"><div class="ttname"><a href="class_r_n_n.html#aa5fb8d612f560a05bfa188453578c1a2">RNN::calculate_error_softmax</a></div><div class="ttdeci">double calculate_error_softmax(const vector&lt; vector&lt; double &gt; &gt; &amp;expected_outputs)</div><div class="ttdoc">Calculates the sum of cross entropy error by comparing the expected outputs and the predicted outputs...</div><div class="ttdef"><b>Definition:</b> rnn.cxx:409</div></div>
+<div class="ttc" id="aclass_time_series_sets_html"><div class="ttname"><a href="class_time_series_sets.html">TimeSeriesSets</a></div><div class="ttdef"><b>Definition:</b> time_series.hxx:114</div></div>
+<div class="ttc" id="aclass_corpus_html"><div class="ttname"><a href="class_corpus.html">Corpus</a></div><div class="ttdef"><b>Definition:</b> word_series.hxx:163</div></div>
+<div class="ttc" id="aclass_r_n_n_html"><div class="ttname"><a href="class_r_n_n.html">RNN</a></div><div class="ttdef"><b>Definition:</b> rnn.hxx:18</div></div>
+<div class="ttc" id="aclass_r_n_n___node___interface_html"><div class="ttname"><a href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></div><div class="ttdef"><b>Definition:</b> rnn_node_interface.hxx:133</div></div>
+<div class="ttc" id="aclass_r_n_n_html_ad70d91c21e6cd8890467d3f64eac0b9a"><div class="ttname"><a href="class_r_n_n.html#ad70d91c21e6cd8890467d3f64eac0b9a">RNN::series_length</a></div><div class="ttdeci">int series_length</div><div class="ttdoc">Specifies the length of the dataset.</div><div class="ttdef"><b>Definition:</b> rnn.hxx:25</div></div>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">rnn_edge.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_RNN_EDGE_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_RNN_EDGE_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &quot;rnn_node_interface.hxx&quot;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
+<div class="line"><a name="l00006"></a><span class="lineno"><a class="line" href="class_r_n_n___edge.html">    6</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> {</div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;        int32_t innovation_number;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160; </div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> outputs;</div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> deltas;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;bool&gt;</a> dropped_out;</div>
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+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;        <span class="keywordtype">double</span> weight;</div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;        <span class="keywordtype">double</span> d_weight;</div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160; </div>
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+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;        <span class="keywordtype">bool</span> forward_reachable;</div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;        <span class="keywordtype">bool</span> backward_reachable;</div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160; </div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;        int32_t input_innovation_number;</div>
+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;        int32_t output_innovation_number;</div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160; </div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *input_node;</div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *output_node;</div>
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+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;        <a class="code" href="class_r_n_n___edge.html">RNN_Edge</a>(int32_t _innovation_number, <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *_input_node, <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *_output_node);</div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160; </div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;        <a class="code" href="class_r_n_n___edge.html">RNN_Edge</a>(int32_t _innovation_number, int32_t _input_innovation_number, int32_t _output_innovation_number, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> &amp;nodes);</div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160; </div>
+<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;        <a class="code" href="class_r_n_n___edge.html">RNN_Edge</a>* copy(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> new_nodes);</div>
+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160; </div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;        <span class="keywordtype">void</span> reset(int32_t series_length);</div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160; </div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;        <span class="keywordtype">void</span> propagate_forward(int32_t time);</div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;        <span class="keywordtype">void</span> propagate_backward(int32_t time);</div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160; </div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;        <span class="keywordtype">void</span> propagate_forward(int32_t time, <span class="keywordtype">bool</span> training, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;        <span class="keywordtype">void</span> propagate_backward(int32_t time, <span class="keywordtype">bool</span> training, <span class="keywordtype">double</span> dropout_probability);</div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160; </div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;        <span class="keywordtype">double</span> get_gradient() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;        int32_t get_innovation_number() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;        int32_t get_input_innovation_number() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;        int32_t get_output_innovation_number() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160; </div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;        <span class="keyword">const</span> <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* get_input_node() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;        <span class="keyword">const</span> <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* get_output_node() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160; </div>
+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;        <span class="keywordtype">bool</span> is_enabled() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;        <span class="keywordtype">bool</span> is_reachable() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160; </div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;        <span class="keywordtype">bool</span> equals (<a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> *other) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160; </div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;        <span class="keywordtype">void</span> write_to_stream(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out);</div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160; </div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>;</div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_r_n_n.html">RNN</a>;</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_e_x_a_m_m.html">EXAMM</a>;</div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;};</div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160; </div>
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+<div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="structsort___r_n_n___edges__by__depth.html">   63</a></span>&#160;<span class="keyword">struct </span><a class="code" href="structsort___r_n_n___edges__by__depth.html">sort_RNN_Edges_by_depth</a> {</div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;    <span class="keywordtype">bool</span> operator()(<a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> *n1, <a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> *n2) {</div>
+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;        <span class="keywordflow">if</span> (n1-&gt;get_input_node()-&gt;get_depth() &lt; n2-&gt;get_input_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;            <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160; </div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (n1-&gt;get_input_node()-&gt;get_depth() == n2-&gt;get_input_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;            <span class="comment">//make sure the order of the edges is *always* the same</span></div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;            <span class="comment">//going through the edges in different orders may effect the output</span></div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;            <span class="comment">//of backpropagation</span></div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;            <span class="keywordflow">if</span> (n1-&gt;get_innovation_number() &lt; n2-&gt;get_innovation_number()) {</div>
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+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;        } <span class="keywordflow">else</span> {</div>
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+<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="structsort___r_n_n___edges__by__output__depth.html">   84</a></span>&#160;<span class="keyword">struct </span><a class="code" href="structsort___r_n_n___edges__by__output__depth.html">sort_RNN_Edges_by_output_depth</a> {</div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    <span class="keywordtype">bool</span> operator()(<a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> *n1, <a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> *n2) {</div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;        <span class="keywordflow">if</span> (n1-&gt;get_output_node()-&gt;get_depth() &lt; n2-&gt;get_output_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;            <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160; </div>
+<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;        } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (n1-&gt;get_output_node()-&gt;get_depth() == n2-&gt;get_output_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;            <span class="comment">//make sure the order of the edges is *always* the same</span></div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;            <span class="comment">//going through the edges in different orders may effect the output</span></div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;            <span class="comment">//of backpropagation</span></div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;            <span class="keywordflow">if</span> (n1-&gt;get_innovation_number() &lt; n2-&gt;get_innovation_number()) {</div>
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+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;    }   </div>
+<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;};</div>
+<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160; </div>
+<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160; </div>
+<div class="line"><a name="l00106"></a><span class="lineno"><a class="line" href="structsort___r_n_n___edges__by__innovation.html">  106</a></span>&#160;<span class="keyword">struct </span><a class="code" href="structsort___r_n_n___edges__by__innovation.html">sort_RNN_Edges_by_innovation</a> {</div>
+<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;    <span class="keywordtype">bool</span> operator()(<a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> *n1, <a class="code" href="class_r_n_n___edge.html">RNN_Edge</a> *n2) {</div>
+<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;        <span class="keywordflow">return</span> n1-&gt;get_innovation_number() &lt; n2-&gt;get_innovation_number();</div>
+<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;    }   </div>
+<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;};</div>
+<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160; </div>
+<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160; </div>
+<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160; </div>
+<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160; </div>
+<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160; </div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="astructsort___r_n_n___edges__by__depth_html"><div class="ttname"><a href="structsort___r_n_n___edges__by__depth.html">sort_RNN_Edges_by_depth</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:63</div></div>
+<div class="ttc" id="astructsort___r_n_n___edges__by__innovation_html"><div class="ttname"><a href="structsort___r_n_n___edges__by__innovation.html">sort_RNN_Edges_by_innovation</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:106</div></div>
+<div class="ttc" id="abasic_ostream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a></div></div>
+<div class="ttc" id="aclass_e_x_a_m_m_html"><div class="ttname"><a href="class_e_x_a_m_m.html">EXAMM</a></div><div class="ttdef"><b>Definition:</b> examm.hxx:24</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html"><div class="ttname"><a href="class_r_n_n___genome.html">RNN_Genome</a></div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:37</div></div>
+<div class="ttc" id="astructsort___r_n_n___edges__by__output__depth_html"><div class="ttname"><a href="structsort___r_n_n___edges__by__output__depth.html">sort_RNN_Edges_by_output_depth</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:84</div></div>
+<div class="ttc" id="aclass_r_n_n_html"><div class="ttname"><a href="class_r_n_n.html">RNN</a></div><div class="ttdef"><b>Definition:</b> rnn.hxx:18</div></div>
+<div class="ttc" id="aclass_r_n_n___node___interface_html"><div class="ttname"><a href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></div><div class="ttdef"><b>Definition:</b> rnn_node_interface.hxx:133</div></div>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: rnn/rnn_genome.hxx Source File</title>
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+<table cellspacing="0" cellpadding="0">
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
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+ </tr>
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+</table>
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+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+     onmouseout="return searchBox.OnSearchSelectHide()"
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+
+<!-- iframe showing the search results (closed by default) -->
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+        name="MSearchResults" id="MSearchResults">
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+<div id="nav-path" class="navpath">
+  <ul>
+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
+</div>
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">rnn_genome.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef RNN_BPTT_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define RNN_BPTT_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_istream.html">std::istream</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">std::ifstream</a>;</div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a>;</div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ofstream.html">std::ofstream</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160; </div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">std::map</a>;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">std::uniform_int_distribution</a>;</div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/mersenne_twister_engine.html">std::mt19937</a>;</div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160; </div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a>;</div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160; </div>
+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="preprocessor">#include &quot;rnn.hxx&quot;</span></div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="preprocessor">#include &quot;rnn_node_interface.hxx&quot;</span></div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="preprocessor">#include &quot;rnn_edge.hxx&quot;</span></div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="preprocessor">#include &quot;rnn_recurrent_edge.hxx&quot;</span></div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160; </div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="preprocessor">#include &quot;common/random.hxx&quot;</span></div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="preprocessor">#include &quot;common/weight_initialize.hxx&quot;</span></div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="preprocessor">#include &quot;time_series/time_series.hxx&quot;</span></div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="preprocessor">#include &quot;word_series/word_series.hxx&quot;</span></div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160; </div>
+<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">//mysql can&#39;t handle the max float value for some reason</span></div>
+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="preprocessor">#define EXAMM_MAX_DOUBLE 10000000</span></div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160; </div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="keywordtype">string</span> parse_fitness(<span class="keywordtype">double</span> fitness);</div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160; </div>
+<div class="line"><a name="l00037"></a><span class="lineno"><a class="line" href="class_r_n_n___genome.html">   37</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> {</div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;        int32_t generation_id;</div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;        int32_t group_id;</div>
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+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;        int32_t bp_iterations;</div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;        <span class="keywordtype">double</span> learning_rate;</div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;        <span class="keywordtype">bool</span> adapt_learning_rate;</div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;        <span class="keywordtype">bool</span> use_nesterov_momentum;</div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;        <span class="keywordtype">bool</span> use_reset_weights;</div>
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+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;        <span class="keywordtype">bool</span> use_high_norm;</div>
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+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;        <span class="keywordtype">bool</span> use_low_norm;</div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;        <span class="keywordtype">double</span> low_threshold;</div>
+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160; </div>
+<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="class_r_n_n___genome.html#a32113888aee78f2b95490a5289f47a44">   58</a></span>&#160;        <span class="keywordtype">bool</span> <a class="code" href="class_r_n_n___genome.html#a32113888aee78f2b95490a5289f47a44">use_regression</a>;</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160; </div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;        <span class="keywordtype">bool</span> use_dropout;</div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;        <span class="keywordtype">double</span> dropout_probability;</div>
+<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160; </div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;        <span class="keywordtype">string</span> structural_hash;</div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160; </div>
+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;        <span class="keywordtype">string</span> log_filename;</div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160; </div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;        WeightType weight_initialize;</div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        WeightType weight_inheritance;</div>
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+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160; </div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string, int&gt;</a> generated_by_map;</div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160; </div>
+<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> initial_parameters;</div>
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+<div class="line"><a name="l00080"></a><span class="lineno"><a class="line" href="class_r_n_n___genome.html#a41ba624f5a9311ee8ef0803ae6063156">   80</a></span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_r_n_n___genome.html#a41ba624f5a9311ee8ef0803ae6063156">best_validation_mse</a>;</div>
+<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;        <span class="keywordtype">double</span> best_validation_mae;</div>
+<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> best_parameters;</div>
+<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160; </div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> generator;</div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160; </div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> rng;</div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> rng_0_1;</div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> rng_1_1;</div>
+<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;        <a class="code" href="class_normal_distribution.html">NormalDistribution</a> normal_distribution;</div>
+<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160; </div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> nodes;</div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Edge*&gt;</a> edges;</div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Recurrent_Edge*&gt;</a> recurrent_edges;</div>
+<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160; </div>
+<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> input_parameter_names;</div>
+<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> output_parameter_names;</div>
+<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160; </div>
+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <span class="keywordtype">string</span> normalize_type;</div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> normalize_mins;</div>
+<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> normalize_maxs;</div>
+<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> normalize_avgs;</div>
+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> normalize_std_devs;</div>
+<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160; </div>
+<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;        <span class="comment">// vector&lt;int32_t&gt; innovation_list;</span></div>
+<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160; </div>
+<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;        <span class="keywordtype">void</span> sort_nodes_by_depth();</div>
+<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;        <span class="keywordtype">void</span> sort_edges_by_depth();</div>
+<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;        <span class="keywordtype">void</span> sort_recurrent_edges_by_depth();</div>
+<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160; </div>
+<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> &amp;_nodes, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Edge*&gt;</a> &amp;_edges, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Recurrent_Edge*&gt;</a> &amp;_recurrent_edges, WeightType _weight_initialize, WeightType _weight_inheritance, WeightType _mutated_component_weight);</div>
+<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> &amp;_nodes, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Edge*&gt;</a> &amp;_edges, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Recurrent_Edge*&gt;</a> &amp;_recurrent_edges, uint16_t seed, WeightType _weight_initialize, WeightType _weight_inheritance, WeightType _mutated_component_weight);</div>
+<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160; </div>
+<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* copy();</div>
+<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160; </div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;        ~<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>();</div>
+<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160; </div>
+<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;        <span class="keyword">static</span> <span class="keywordtype">string</span> print_statistics_header();</div>
+<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;        <span class="keywordtype">string</span> print_statistics();</div>
+<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160; </div>
+<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;        <span class="keywordtype">void</span> set_parameter_names(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;_input_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;_output_parameter_names);</div>
+<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160; </div>
+<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;        <span class="keywordtype">string</span> generated_by_string();</div>
+<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160; </div>
+<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;        <span class="keywordtype">string</span> get_edge_count_str(<span class="keywordtype">bool</span> recurrent);</div>
+<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;        <span class="keywordtype">string</span> get_node_count_str(<span class="keywordtype">int</span> node_type);</div>
+<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160; </div>
+<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;        <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string, int&gt;</a> *get_generated_by_map();</div>
+<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160; </div>
+<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;        <span class="keywordtype">double</span> get_avg_recurrent_depth() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160; </div>
+<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;        int32_t get_enabled_edge_count();</div>
+<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;        int32_t get_enabled_recurrent_edge_count();</div>
+<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;        int32_t get_enabled_node_count(<span class="keywordtype">int</span> node_type);</div>
+<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;        int32_t get_node_count(<span class="keywordtype">int</span> node_type);</div>
+<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;        int32_t get_enabled_node_count();</div>
+<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;        int32_t get_node_count();</div>
+<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160; </div>
+<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160; </div>
+<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_r_n_n___genome.html#a38239d73966179c24fc12254810b31ad">get_fitness</a>() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160; </div>
+<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160; </div>
+<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;        <span class="keywordtype">double</span> get_best_validation_softmax() <span class="keyword">const</span>; </div>
+<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;        <span class="keywordtype">double</span> get_best_validation_mse() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;        <span class="keywordtype">double</span> get_best_validation_mae() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160; </div>
+<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160; </div>
+<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;        <span class="keywordtype">void</span> set_normalize_bounds(<span class="keywordtype">string</span> _normalize_type, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_mins, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_maxs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_avgs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_std_devs);</div>
+<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160; </div>
+<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;        <span class="keywordtype">string</span> get_normalize_type() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> get_normalize_mins() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> get_normalize_maxs() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> get_normalize_avgs() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> get_normalize_std_devs() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160; </div>
+<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> get_input_parameter_names() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> get_output_parameter_names() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160; </div>
+<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;        int32_t get_group_id() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;        <span class="keywordtype">void</span> set_group_id(int32_t _group_id);</div>
+<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160; </div>
+<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160; </div>
+<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;        <span class="keywordtype">void</span> set_bp_iterations(int32_t _bp_iterations);</div>
+<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;        int32_t get_bp_iterations();</div>
+<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160; </div>
+<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;        <span class="keywordtype">void</span> set_learning_rate(<span class="keywordtype">double</span> _learning_rate);</div>
+<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;        <span class="keywordtype">void</span> set_adapt_learning_rate(<span class="keywordtype">bool</span> _adapt_learning_rate);</div>
+<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;        <span class="keywordtype">void</span> set_nesterov_momentum(<span class="keywordtype">bool</span> _use_nesterov_momentum);</div>
+<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;        <span class="keywordtype">void</span> set_reset_weights(<span class="keywordtype">bool</span> _use_reset_weights);</div>
+<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;        <span class="keywordtype">void</span> disable_high_threshold();</div>
+<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;        <span class="keywordtype">void</span> enable_high_threshold(<span class="keywordtype">double</span> _high_threshold);</div>
+<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;        <span class="keywordtype">void</span> disable_low_threshold();</div>
+<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;        <span class="keywordtype">void</span> enable_low_threshold(<span class="keywordtype">double</span> _low_threshold);</div>
+<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;        <span class="keywordtype">void</span> disable_dropout();</div>
+<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;        <span class="keywordtype">void</span> enable_dropout(<span class="keywordtype">double</span> _dropout_probability);</div>
+<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;        <span class="keywordtype">void</span> enable_use_regression(<span class="keywordtype">bool</span> _use_regression);</div>
+<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;        <span class="keywordtype">void</span> set_log_filename(<span class="keywordtype">string</span> _log_filename);</div>
+<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160; </div>
+<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;        <span class="keywordtype">void</span> get_weights(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters);</div>
+<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;        <span class="keywordtype">void</span> set_weights(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters);</div>
+<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160; </div>
+<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;        uint32_t get_number_weights();</div>
+<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;        uint32_t get_number_inputs();</div>
+<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;        uint32_t get_number_outputs();</div>
+<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160; </div>
+<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;        <span class="keywordtype">double</span> get_avg_edge_weight();</div>
+<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;        <span class="keywordtype">void</span> initialize_randomly();</div>
+<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;        <span class="keywordtype">void</span> initialize_xavier(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* n);</div>
+<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;        <span class="keywordtype">void</span> initialize_kaiming(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* n);</div>
+<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;        <span class="keywordtype">void</span> initialize_node_randomly(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* n);</div>
+<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;        <span class="keywordtype">double</span> get_xavier_weight(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* output_node);</div>
+<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;        <span class="keywordtype">double</span> get_kaiming_weight(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* output_node);</div>
+<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;        <span class="keywordtype">double</span> get_random_weight();</div>
+<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160; </div>
+<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160; </div>
+<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;        <span class="keywordtype">void</span> get_input_edges(int32_t node_innovation, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt; RNN_Edge*&gt;</a> &amp;input_edges, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt; RNN_Recurrent_Edge*&gt;</a> &amp;input_recurrent_edges);</div>
+<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;        int32_t get_fan_in(int32_t node_innovation);</div>
+<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;        int32_t get_fan_out(int32_t node_innovation);</div>
+<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160; </div>
+<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;        int32_t get_generation_id() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;        <span class="keywordtype">void</span> set_generation_id(int32_t generation_id);</div>
+<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160; </div>
+<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;        <span class="keywordtype">void</span> clear_generated_by();</div>
+<div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;        <span class="keywordtype">void</span> update_generation_map(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string, int32_t&gt;</a> &amp;generation_map);</div>
+<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;        <span class="keywordtype">void</span> set_generated_by(<span class="keywordtype">string</span> type);</div>
+<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;        int32_t get_generated_by(<span class="keywordtype">string</span> type);</div>
+<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160; </div>
+<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160; </div>
+<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;        <a class="code" href="class_r_n_n.html">RNN</a>* get_rnn();</div>
+<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> get_best_parameters() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160; </div>
+<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;        <span class="keywordtype">void</span> set_best_parameters( <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> parameters);    <span class="comment">//INFO: ADDED BY ABDELRAHMAN TO USE FOR TRANSFER LEARNING</span></div>
+<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;        <span class="keywordtype">void</span> set_initial_parameters( <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> parameters);  <span class="comment">//INFO: ADDED BY ABDELRAHMAN TO USE FOR TRANSFER LEARNING</span></div>
+<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160; </div>
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+<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;        <span class="keywordtype">void</span> backpropagate(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;inputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;outputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;validation_inputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;validation_outputs);</div>
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+<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160; </div>
+<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_r_n_n___genome.html#a8f267b82d174d4a10bd48049e025a99b">get_softmax</a>(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;inputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;outputs);</div>
+<div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;        <span class="keywordtype">double</span> get_mse(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;inputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;outputs);</div>
+<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;        <span class="keywordtype">double</span> get_mae(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;inputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;outputs);</div>
+<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160; </div>
+<div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160; </div>
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+<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;        <span class="keywordtype">void</span> write_predictions(<span class="keywordtype">string</span> output_directory, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;input_filenames, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;inputs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;outputs, <a class="code" href="class_time_series_sets.html">TimeSeriesSets</a> *time_series_sets);</div>
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+<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160; </div>
+<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;        <span class="keywordtype">void</span> get_mu_sigma(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;p, <span class="keywordtype">double</span> &amp;mu, <span class="keywordtype">double</span> &amp;sigma);</div>
+<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160; </div>
+<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;        <span class="keywordtype">bool</span> sanity_check();</div>
+<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;        <span class="keywordtype">void</span> assign_reachability();</div>
+<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;        <span class="keywordtype">bool</span> outputs_unreachable();</div>
+<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160; </div>
+<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* create_node(<span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma, <span class="keywordtype">int</span> node_type, int32_t &amp;node_innovation_count, <span class="keywordtype">double</span> depth);</div>
+<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160; </div>
+<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;        <span class="keywordtype">bool</span> attempt_edge_insert(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *n1, <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *n2, <span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma, int32_t &amp;edge_innovation_count);</div>
+<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;        <span class="keywordtype">bool</span> attempt_recurrent_edge_insert(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *n1, <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *n2, <span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">uniform_int_distribution&lt;int32_t&gt;</a> dist, int32_t &amp;edge_innovation_count);</div>
+<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160; </div>
+<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;        <span class="comment">//after adding an Elman or Jordan node, generate the circular RNN edge for Elman and the</span></div>
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+<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;        <span class="keywordtype">void</span> generate_recurrent_edges(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *node, <span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">uniform_int_distribution&lt;int32_t&gt;</a> dist, int32_t &amp;edge_innovation_count);</div>
+<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160; </div>
+<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;        <span class="keywordtype">bool</span> add_edge(<span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma, int32_t &amp;edge_innovation_count);</div>
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+<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;        <span class="keywordtype">bool</span> disable_edge();</div>
+<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;        <span class="keywordtype">bool</span> enable_edge();</div>
+<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;        <span class="keywordtype">bool</span> split_edge(<span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma, <span class="keywordtype">int</span> node_type, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">uniform_int_distribution&lt;int32_t&gt;</a> rec_depth_dist, int32_t &amp;edge_innovation_count, int32_t &amp;node_innovation_count);</div>
+<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160; </div>
+<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160; </div>
+<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;        <span class="keywordtype">bool</span> add_node(<span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma, <span class="keywordtype">int</span> node_type, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">uniform_int_distribution&lt;int32_t&gt;</a> dist, int32_t &amp;edge_innovation_count, int32_t &amp;node_innovation_count);</div>
+<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160; </div>
+<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;        <span class="keywordtype">bool</span> enable_node();</div>
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+<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;        <span class="keywordtype">bool</span> split_node(<span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma, <span class="keywordtype">int</span> node_type, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">uniform_int_distribution&lt;int32_t&gt;</a> dist, int32_t &amp;edge_innovation_count, int32_t &amp;node_innovation_count);</div>
+<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;        <span class="keywordtype">bool</span> merge_node(<span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma, <span class="keywordtype">int</span> node_type, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">uniform_int_distribution&lt;int32_t&gt;</a> dist, int32_t &amp;edge_innovation_count, int32_t &amp;node_innovation_count);</div>
+<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160; </div>
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+<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;        <span class="keywordtype">bool</span> equals(<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *other);</div>
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+<div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160;<span class="preprocessor">#endif</span></div>
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+<div class="ttc" id="auniform_int_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_int_distribution.html">std::uniform_int_distribution</a></div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html_a280b5a80c457fd341fe82ec9cc930d01"><div class="ttname"><a href="class_r_n_n___genome.html#a280b5a80c457fd341fe82ec9cc930d01">RNN_Genome::get_structural_hash</a></div><div class="ttdeci">string get_structural_hash() const</div><div class="ttdef"><b>Definition:</b> rnn_genome.cxx:3666</div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
+<div class="ttc" id="aclass_normal_distribution_html"><div class="ttname"><a href="class_normal_distribution.html">NormalDistribution</a></div><div class="ttdef"><b>Definition:</b> random.hxx:19</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html_a38239d73966179c24fc12254810b31ad"><div class="ttname"><a href="class_r_n_n___genome.html#a38239d73966179c24fc12254810b31ad">RNN_Genome::get_fitness</a></div><div class="ttdeci">double get_fitness() const</div><div class="ttdoc">Calculates the fitness of the rnn genome across the dataset.</div><div class="ttdef"><b>Definition:</b> rnn_genome.cxx:850</div></div>
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+<div class="ttc" id="auniform_real_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a></div></div>
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+<div class="ttc" id="aclass_neat_speciation_strategy_html"><div class="ttname"><a href="class_neat_speciation_strategy.html">NeatSpeciationStrategy</a></div><div class="ttdef"><b>Definition:</b> neat_speciation_strategy.hxx:18</div></div>
+<div class="ttc" id="abasic_ostream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a></div></div>
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+<div class="ttc" id="amap_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/map.html">std::map</a></div></div>
+<div class="ttc" id="aclass_time_series_sets_html"><div class="ttname"><a href="class_time_series_sets.html">TimeSeriesSets</a></div><div class="ttdef"><b>Definition:</b> time_series.hxx:114</div></div>
+<div class="ttc" id="aclass_e_x_a_m_m_html"><div class="ttname"><a href="class_e_x_a_m_m.html">EXAMM</a></div><div class="ttdef"><b>Definition:</b> examm.hxx:24</div></div>
+<div class="ttc" id="aclass_corpus_html"><div class="ttname"><a href="class_corpus.html">Corpus</a></div><div class="ttdef"><b>Definition:</b> word_series.hxx:163</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html"><div class="ttname"><a href="class_r_n_n___genome.html">RNN_Genome</a></div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:37</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html_a41ba624f5a9311ee8ef0803ae6063156"><div class="ttname"><a href="class_r_n_n___genome.html#a41ba624f5a9311ee8ef0803ae6063156">RNN_Genome::best_validation_mse</a></div><div class="ttdeci">double best_validation_mse</div><div class="ttdoc">Specifies the validation error across the dataset.</div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:80</div></div>
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+<div class="ttc" id="aclass_r_n_n_html"><div class="ttname"><a href="class_r_n_n.html">RNN</a></div><div class="ttdef"><b>Definition:</b> rnn.hxx:18</div></div>
+<div class="ttc" id="abasic_istream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_istream.html">std::istream</a></div></div>
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+<div class="ttc" id="abasic_ifstream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ifstream.html">std::ifstream</a></div></div>
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+<div class="title">rnn_node.hxx</div>  </div>
+</div><!--header-->
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_RNN_NODE_HXX</span></div>
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+<div class="ttc" id="aclass_r_n_n___node_html"><div class="ttname"><a href="class_r_n_n___node.html">RNN_Node</a></div><div class="ttdef"><b>Definition:</b> rnn_node.hxx:9</div></div>
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+<div class="title">rnn_node_interface.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_RNN_NODE_INTERFACE_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_RNN_NODE_INTERFACE_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;cstdint&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a>;</div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160; </div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
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+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
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+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="preprocessor">extern const int32_t NUMBER_NODE_TYPES;</span></div>
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+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#define ENARC_NODE 8  </span></div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#define ENAS_DAG_NODE 9  </span></div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#define RANDOM_DAG_NODE 10  </span></div>
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+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;<span class="keywordtype">double</span> tanh_derivative(<span class="keywordtype">double</span> value);</div>
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+<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;<span class="keywordtype">double</span> identity_derivative();</div>
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+<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160; </div>
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+<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;        int32_t innovation_number;</div>
+<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;        int32_t layer_type;</div>
+<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;        int32_t node_type;</div>
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+<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;        <span class="keywordtype">double</span> depth;</div>
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+<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;        <span class="keywordtype">string</span> parameter_name;</div>
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+<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> error_values;</div>
+<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> d_input;</div>
+<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160; </div>
+<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int32_t&gt;</a> inputs_fired;</div>
+<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int32_t&gt;</a> outputs_fired;</div>
+<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;        int32_t total_inputs;</div>
+<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;        int32_t total_outputs;</div>
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+<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;        <span class="comment">//this constructor is for hidden nodes</span></div>
+<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>(int32_t _innovation_number, int32_t _layer_type, <span class="keywordtype">double</span> _depth);</div>
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+<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;        <span class="comment">//this constructor is for input and output nodes (as they have an associated parameter name</span></div>
+<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>(int32_t _innovation_number, int32_t _layer_type, <span class="keywordtype">double</span> _depth, <span class="keywordtype">string</span> _parameter_name);</div>
+<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;        <span class="keyword">virtual</span> ~<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>();</div>
+<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160; </div>
+<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> initialize_lamarckian(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="code" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, <span class="keywordtype">double</span> mu, <span class="keywordtype">double</span> sigma) = 0;</div>
+<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> initialize_xavier(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng_1_1, <span class="keywordtype">double</span> range) = 0;</div>
+<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> initialize_kaiming(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="code" href="class_normal_distribution.html">NormalDistribution</a> &amp;normal_distribution, <span class="keywordtype">double</span> range) = 0;</div>
+<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> initialize_uniform_random(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng) = 0;</div>
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+<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> input_fired(int32_t time, <span class="keywordtype">double</span> incoming_output) = 0;</div>
+<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> output_fired(int32_t time, <span class="keywordtype">double</span> delta) = 0;</div>
+<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> error_fired(int32_t time, <span class="keywordtype">double</span> error) = 0;</div>
+<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160; </div>
+<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;        <span class="keyword">virtual</span> uint32_t get_number_weights() <span class="keyword">const</span> = 0;</div>
+<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160; </div>
+<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> get_weights(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters) <span class="keyword">const</span> = 0;</div>
+<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> set_weights(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters) = 0;</div>
+<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> get_weights(uint32_t &amp;offset, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters) <span class="keyword">const</span> = 0;</div>
+<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> set_weights(uint32_t &amp;offset, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;parameters) = 0;</div>
+<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> reset(int32_t _series_length) = 0;</div>
+<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160; </div>
+<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> get_gradients(<a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &amp;gradients) = 0;</div>
+<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160; </div>
+<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;        <span class="keyword">virtual</span> <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* copy() <span class="keyword">const</span> = 0;</div>
+<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160; </div>
+<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;        <span class="keywordtype">void</span> write_to_stream(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out);</div>
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+<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;        int32_t get_node_type() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;        int32_t get_layer_type() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;        int32_t get_innovation_number() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;        int32_t get_total_inputs() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;        int32_t get_total_outputs() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160; </div>
+<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;        <span class="keywordtype">double</span> get_depth() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;        <span class="keywordtype">bool</span> equals(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *other) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160; </div>
+<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;        <span class="keywordtype">bool</span> is_reachable() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;        <span class="keywordtype">bool</span> is_enabled() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160; </div>
+<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_r_n_n___edge.html">RNN_Edge</a>;</div>
+<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>;</div>
+<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_r_n_n.html">RNN</a>;</div>
+<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>;</div>
+<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160; </div>
+<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;        <span class="keyword">friend</span> <span class="keywordtype">void</span> get_mse(<a class="code" href="class_r_n_n.html">RNN</a>* genome, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected, <span class="keywordtype">double</span> &amp;mse, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;deltas);</div>
+<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;        <span class="keyword">friend</span> <span class="keywordtype">void</span> get_mae(<a class="code" href="class_r_n_n.html">RNN</a>* genome, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;expected, <span class="keywordtype">double</span> &amp;mae, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;deltas);</div>
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+<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;    <span class="keywordtype">bool</span> operator()(<a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *n1, <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *n2) {</div>
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+<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160; </div>
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+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
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+<div class="ttc" id="aclass_r_n_n___recurrent___edge_html"><div class="ttname"><a href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_recurrent_edge.hxx:8</div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
+<div class="ttc" id="aclass_normal_distribution_html"><div class="ttname"><a href="class_normal_distribution.html">NormalDistribution</a></div><div class="ttdef"><b>Definition:</b> random.hxx:19</div></div>
+<div class="ttc" id="auniform_real_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a></div></div>
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+<div class="ttc" id="astructsort___r_n_n___nodes__by__depth_html"><div class="ttname"><a href="structsort___r_n_n___nodes__by__depth.html">sort_RNN_Nodes_by_depth</a></div><div class="ttdef"><b>Definition:</b> rnn_node_interface.hxx:220</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html"><div class="ttname"><a href="class_r_n_n___genome.html">RNN_Genome</a></div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:37</div></div>
+<div class="ttc" id="astructsort___r_n_n___nodes__by__innovation_html"><div class="ttname"><a href="structsort___r_n_n___nodes__by__innovation.html">sort_RNN_Nodes_by_innovation</a></div><div class="ttdef"><b>Definition:</b> rnn_node_interface.hxx:213</div></div>
+<div class="ttc" id="aclass_r_n_n_html"><div class="ttname"><a href="class_r_n_n.html">RNN</a></div><div class="ttdef"><b>Definition:</b> rnn.hxx:18</div></div>
+<div class="ttc" id="aclass_r_n_n___node___interface_html"><div class="ttname"><a href="class_r_n_n___node___interface.html">RNN_Node_Interface</a></div><div class="ttdef"><b>Definition:</b> rnn_node_interface.hxx:133</div></div>
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+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
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+<div class="title">rnn_recurrent_edge.hxx</div>  </div>
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+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_RNN_RECURRENT_EDGE_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_RNN_RECURRENT_EDGE_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="keyword">class </span><a class="code" href="class_r_n_n.html">RNN</a>;</div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#include &quot;rnn_node_interface.hxx&quot;</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160; </div>
+<div class="line"><a name="l00008"></a><span class="lineno"><a class="line" href="class_r_n_n___recurrent___edge.html">    8</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> {</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;        int32_t innovation_number;</div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;        int32_t series_length;</div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;        <span class="comment">//how far in the past to get the value</span></div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;        int32_t recurrent_depth;</div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160; </div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> outputs;</div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> deltas;</div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160; </div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;        <span class="keywordtype">double</span> weight;</div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;        <span class="keywordtype">double</span> d_weight;</div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160; </div>
+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;        <span class="keywordtype">bool</span> enabled;</div>
+<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;        <span class="keywordtype">bool</span> forward_reachable;</div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;        <span class="keywordtype">bool</span> backward_reachable;</div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160; </div>
+<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;        int32_t input_innovation_number;</div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;        int32_t output_innovation_number;</div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160; </div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *input_node;</div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;        <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *output_node;</div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160; </div>
+<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;        <a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>(int32_t _innovation_number, int32_t _recurrent_depth, <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *_input_node, <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a> *_output_node);</div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160; </div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;        <a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>(int32_t _innovation_number, int32_t _recurrent_depth, int32_t _input_innovation_number, int32_t _output_innovation_number, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> &amp;nodes);</div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160; </div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;        <span class="keywordtype">void</span> reset(int32_t _series_length);</div>
+<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160; </div>
+<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;        <span class="keywordtype">void</span> first_propagate_forward();</div>
+<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;        <span class="keywordtype">void</span> first_propagate_backward();</div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;        <span class="keywordtype">void</span> propagate_forward(int32_t time);</div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;        <span class="keywordtype">void</span> propagate_backward(int32_t time);</div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160; </div>
+<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;        int32_t get_recurrent_depth() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;        <span class="keywordtype">double</span> get_gradient();</div>
+<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;        <span class="keywordtype">bool</span> is_enabled() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;        <span class="keywordtype">bool</span> is_reachable() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160; </div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;        <a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a>* copy(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Node_Interface*&gt;</a> new_nodes);</div>
+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160; </div>
+<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;        int32_t get_innovation_number() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;        int32_t get_input_innovation_number() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;        int32_t get_output_innovation_number() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160; </div>
+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;        <span class="keyword">const</span> <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* get_input_node() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;        <span class="keyword">const</span> <a class="code" href="class_r_n_n___node___interface.html">RNN_Node_Interface</a>* get_output_node() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160; </div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;        <span class="keywordtype">void</span> write_to_stream(<a class="codeRef" href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">ostream</a> &amp;out);</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160; </div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;        <span class="keywordtype">bool</span> equals(<a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> *other) <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160; </div>
+<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>;</div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_r_n_n.html">RNN</a>;</div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="class_e_x_a_m_m.html">EXAMM</a>;</div>
+<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;        <span class="keyword">friend</span> <span class="keyword">class </span>RecDepthFrequencyTable;</div>
+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;};</div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160; </div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160; </div>
+<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="structsort___r_n_n___recurrent___edges__by__depth.html">   69</a></span>&#160;<span class="keyword">struct </span><a class="code" href="structsort___r_n_n___recurrent___edges__by__depth.html">sort_RNN_Recurrent_Edges_by_depth</a> {</div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    <span class="keywordtype">bool</span> operator()(<a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> *n1, <a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> *n2) {</div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        <span class="keywordflow">if</span> (n1-&gt;get_input_node()-&gt;get_depth() &lt; n2-&gt;get_input_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;            <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160; </div>
+<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;        } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (n1-&gt;get_input_node()-&gt;get_depth() == n2-&gt;get_input_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;            <span class="comment">//make sure the order of the edges is *always* the same</span></div>
+<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;            <span class="comment">//going through the edges in different orders may effect the output</span></div>
+<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;            <span class="comment">//of backpropagation</span></div>
+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;            <span class="keywordflow">if</span> (n1-&gt;get_innovation_number() &lt; n2-&gt;get_innovation_number()) {</div>
+<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;                <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;            } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;                <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;            }</div>
+<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160; </div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;        } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;            <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;        }</div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;    }   </div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;};</div>
+<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160; </div>
+<div class="line"><a name="l00090"></a><span class="lineno"><a class="line" href="structsort___r_n_n___recurrent___edges__by__output__depth.html">   90</a></span>&#160;<span class="keyword">struct </span><a class="code" href="structsort___r_n_n___recurrent___edges__by__output__depth.html">sort_RNN_Recurrent_Edges_by_output_depth</a> {</div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;    <span class="keywordtype">bool</span> operator()(<a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> *n1, <a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> *n2) {</div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        <span class="keywordflow">if</span> (n1-&gt;get_output_node()-&gt;get_depth() &lt; n2-&gt;get_output_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;            <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160; </div>
+<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;        } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (n1-&gt;get_output_node()-&gt;get_depth() == n2-&gt;get_output_node()-&gt;get_depth()) {</div>
+<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;            <span class="comment">//make sure the order of the edges is *always* the same</span></div>
+<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;            <span class="comment">//going through the edges in different orders may effect the output</span></div>
+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;            <span class="comment">//of backpropagation</span></div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;            <span class="keywordflow">if</span> (n1-&gt;get_innovation_number() &lt; n2-&gt;get_innovation_number()) {</div>
+<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;                <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;            } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;                <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;            }</div>
+<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160; </div>
+<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;        } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;            <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;        }</div>
+<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    }   </div>
+<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;};</div>
+<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160; </div>
+<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160; </div>
+<div class="line"><a name="l00112"></a><span class="lineno"><a class="line" href="structsort___r_n_n___recurrent___edges__by__innovation.html">  112</a></span>&#160;<span class="keyword">struct </span><a class="code" href="structsort___r_n_n___recurrent___edges__by__innovation.html">sort_RNN_Recurrent_Edges_by_innovation</a> {</div>
+<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;    <span class="keywordtype">bool</span> operator()(<a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> *n1, <a class="code" href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a> *n2) {</div>
+<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;        <span class="keywordflow">return</span> n1-&gt;get_innovation_number() &lt; n2-&gt;get_innovation_number();</div>
+<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    }   </div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;};</div>
+<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160; </div>
+<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160; </div>
+<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_r_n_n___recurrent___edge_html"><div class="ttname"><a href="class_r_n_n___recurrent___edge.html">RNN_Recurrent_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_recurrent_edge.hxx:8</div></div>
+<div class="ttc" id="astructsort___r_n_n___recurrent___edges__by__depth_html"><div class="ttname"><a href="structsort___r_n_n___recurrent___edges__by__depth.html">sort_RNN_Recurrent_Edges_by_depth</a></div><div class="ttdef"><b>Definition:</b> rnn_recurrent_edge.hxx:69</div></div>
+<div class="ttc" id="abasic_ostream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a></div></div>
+<div class="ttc" id="astructsort___r_n_n___recurrent___edges__by__innovation_html"><div class="ttname"><a href="structsort___r_n_n___recurrent___edges__by__innovation.html">sort_RNN_Recurrent_Edges_by_innovation</a></div><div class="ttdef"><b>Definition:</b> rnn_recurrent_edge.hxx:112</div></div>
+<div class="ttc" id="aclass_e_x_a_m_m_html"><div class="ttname"><a href="class_e_x_a_m_m.html">EXAMM</a></div><div class="ttdef"><b>Definition:</b> examm.hxx:24</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html"><div class="ttname"><a href="class_r_n_n___genome.html">RNN_Genome</a></div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:37</div></div>
+<div class="ttc" id="astructsort___r_n_n___recurrent___edges__by__output__depth_html"><div class="ttname"><a href="structsort___r_n_n___recurrent___edges__by__output__depth.html">sort_RNN_Recurrent_Edges_by_output_depth</a></div><div class="ttdef"><b>Definition:</b> rnn_recurrent_edge.hxx:90</div></div>
+<div class="ttc" id="aclass_r_n_n_html"><div class="ttname"><a href="class_r_n_n.html">RNN</a></div><div class="ttdef"><b>Definition:</b> rnn.hxx:18</div></div>
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+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">run_statistics.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXACT_RUN_STATISTICS</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXACT_RUN_STATISTICS</span></div>
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+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &quot;tracker.hxx&quot;</span></div>
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+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keywordtype">string</span> fix_run_type(<span class="keywordtype">string</span> run_type);</div>
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+  ['ostrstream_3112',['ostrstream',['http://en.cppreference.com/w/cpp/io/ostrstream/ostrstream.html',1,'std::ostrstream']]],
+  ['out_3113',['out',['http://en.cppreference.com/w/cpp/locale/codecvt/out.html',1,'std::codecvt::out()'],['http://en.cppreference.com/w/cpp/locale/codecvt/out.html',1,'std::codecvt_byname::out()'],['http://en.cppreference.com/w/cpp/locale/codecvt/out.html',1,'std::codecvt_utf8::out()'],['http://en.cppreference.com/w/cpp/locale/codecvt/out.html',1,'std::codecvt_utf8_utf16::out()'],['http://en.cppreference.com/w/cpp/locale/codecvt/out.html',1,'std::codecvt_utf16::out()']]],
+  ['out_5fof_5frange_3114',['out_of_range',['http://en.cppreference.com/w/cpp/error/out_of_range.html',1,'std::out_of_range']]],
+  ['outer_5fallocator_3115',['outer_allocator',['http://en.cppreference.com/w/cpp/memory/scoped_allocator_adaptor/outer_allocator.html',1,'std::scoped_allocator_adaptor']]],
+  ['overflow_3116',['overflow',['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::basic_filebuf::overflow()'],['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::wstringbuf::overflow()'],['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::stringbuf::overflow()'],['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::wfilebuf::overflow()'],['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::wstreambuf::overflow()'],['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::strstreambuf::overflow()'],['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::basic_stringbuf::overflow()'],['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::basic_streambuf::overflow()'],['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::filebuf::overflow()'],['http://en.cppreference.com/w/cpp/io/basic_streambuf/overflow.html',1,'std::streambuf::overflow()']]],
+  ['overflow_5ferror_3117',['overflow_error',['http://en.cppreference.com/w/cpp/error/overflow_error.html',1,'std::overflow_error']]],
+  ['owner_5fbefore_3118',['owner_before',['http://en.cppreference.com/w/cpp/memory/weak_ptr/owner_before.html',1,'std::weak_ptr::owner_before()'],['http://en.cppreference.com/w/cpp/memory/shared_ptr/owner_before.html',1,'std::shared_ptr::owner_before()']]],
+  ['owns_5flock_3119',['owns_lock',['http://en.cppreference.com/w/cpp/thread/unique_lock/owns_lock.html',1,'std::unique_lock::owns_lock()'],['http://en.cppreference.com/w/cpp/thread/shared_lock/owns_lock.html',1,'std::shared_lock::owns_lock()']]]
+];
diff --git a/docs/html/search/mag_sel.png b/docs/html/search/mag_sel.png
new file mode 100644
index 00000000..39c0ed52
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diff --git a/docs/html/search/namespaces_0.html b/docs/html/search/namespaces_0.html
new file mode 100644
index 00000000..76996d1c
--- /dev/null
+++ b/docs/html/search/namespaces_0.html
@@ -0,0 +1,30 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html><head><title></title>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<link rel="stylesheet" type="text/css" href="search.css"/>
+<script type="text/javascript" src="namespaces_0.js"></script>
+<script type="text/javascript" src="search.js"></script>
+</head>
+<body class="SRPage">
+<div id="SRIndex">
+<div class="SRStatus" id="Loading">Loading...</div>
+<div id="SRResults"></div>
+<script type="text/javascript"><!--
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+createResults();
+/* @license-end */
+--></script>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+<script type="text/javascript"><!--
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+document.getElementById("Loading").style.display="none";
+document.getElementById("NoMatches").style.display="none";
+var searchResults = new SearchResults("searchResults");
+searchResults.Search();
+/* @license-end */
+--></script>
+</div>
+</body>
+</html>
diff --git a/docs/html/search/namespaces_0.js b/docs/html/search/namespaces_0.js
new file mode 100644
index 00000000..7ae57e0c
--- /dev/null
+++ b/docs/html/search/namespaces_0.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['plot_5fmulti_5ftime_5fseries_2384',['plot_multi_time_series',['../namespaceplot__multi__time__series.html',1,'']]]
+];
diff --git a/docs/html/search/namespaces_1.html b/docs/html/search/namespaces_1.html
new file mode 100644
index 00000000..c69e3662
--- /dev/null
+++ b/docs/html/search/namespaces_1.html
@@ -0,0 +1,30 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html><head><title></title>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<link rel="stylesheet" type="text/css" href="search.css"/>
+<script type="text/javascript" src="namespaces_1.js"></script>
+<script type="text/javascript" src="search.js"></script>
+</head>
+<body class="SRPage">
+<div id="SRIndex">
+<div class="SRStatus" id="Loading">Loading...</div>
+<div id="SRResults"></div>
+<script type="text/javascript"><!--
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+createResults();
+/* @license-end */
+--></script>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+<script type="text/javascript"><!--
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+document.getElementById("Loading").style.display="none";
+document.getElementById("NoMatches").style.display="none";
+var searchResults = new SearchResults("searchResults");
+searchResults.Search();
+/* @license-end */
+--></script>
+</div>
+</body>
+</html>
diff --git a/docs/html/search/namespaces_1.js b/docs/html/search/namespaces_1.js
new file mode 100644
index 00000000..347c4398
--- /dev/null
+++ b/docs/html/search/namespaces_1.js
@@ -0,0 +1,9 @@
+var searchData=
+[
+  ['chrono_2385',['chrono',['http://en.cppreference.com/w/namespacestd_1_1chrono.html',1,'std']]],
+  ['experimental_2386',['experimental',['http://en.cppreference.com/w/namespacestd_1_1experimental.html',1,'std']]],
+  ['regex_5fconstants_2387',['regex_constants',['http://en.cppreference.com/w/namespacestd_1_1regex__constants.html',1,'std']]],
+  ['rel_5fops_2388',['rel_ops',['http://en.cppreference.com/w/namespacestd_1_1rel__ops.html',1,'std']]],
+  ['std_2389',['std',['http://en.cppreference.com/w/namespacestd.html',1,'']]],
+  ['this_5fthread_2390',['this_thread',['http://en.cppreference.com/w/namespacestd_1_1this__thread.html',1,'std']]]
+];
diff --git a/docs/html/search/nomatches.html b/docs/html/search/nomatches.html
new file mode 100644
index 00000000..43773208
--- /dev/null
+++ b/docs/html/search/nomatches.html
@@ -0,0 +1,12 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html><head><title></title>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<link rel="stylesheet" type="text/css" href="search.css"/>
+<script type="text/javascript" src="search.js"></script>
+</head>
+<body class="SRPage">
+<div id="SRIndex">
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</body>
+</html>
diff --git a/docs/html/search/pages_0.html b/docs/html/search/pages_0.html
new file mode 100644
index 00000000..9a6a29ad
--- /dev/null
+++ b/docs/html/search/pages_0.html
@@ -0,0 +1,30 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html><head><title></title>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<link rel="stylesheet" type="text/css" href="search.css"/>
+<script type="text/javascript" src="pages_0.js"></script>
+<script type="text/javascript" src="search.js"></script>
+</head>
+<body class="SRPage">
+<div id="SRIndex">
+<div class="SRStatus" id="Loading">Loading...</div>
+<div id="SRResults"></div>
+<script type="text/javascript"><!--
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+createResults();
+/* @license-end */
+--></script>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+<script type="text/javascript"><!--
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+document.getElementById("Loading").style.display="none";
+document.getElementById("NoMatches").style.display="none";
+var searchResults = new SearchResults("searchResults");
+searchResults.Search();
+/* @license-end */
+--></script>
+</div>
+</body>
+</html>
diff --git a/docs/html/search/pages_0.js b/docs/html/search/pages_0.js
new file mode 100644
index 00000000..d93980e3
--- /dev/null
+++ b/docs/html/search/pages_0.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['getting_20started_20and_20prerequisites_3773',['Getting Started and Prerequisites',['../md__r_e_a_d_m_e.html',1,'']]]
+];
diff --git a/docs/html/search/search.css b/docs/html/search/search.css
new file mode 100644
index 00000000..3cf9df94
--- /dev/null
+++ b/docs/html/search/search.css
@@ -0,0 +1,271 @@
+/*---------------- Search Box */
+
+#FSearchBox {
+    float: left;
+}
+
+#MSearchBox {
+    white-space : nowrap;
+    float: none;
+    margin-top: 8px;
+    right: 0px;
+    width: 170px;
+    height: 24px;
+    z-index: 102;
+}
+
+#MSearchBox .left
+{
+    display:block;
+    position:absolute;
+    left:10px;
+    width:20px;
+    height:19px;
+    background:url('search_l.png') no-repeat;
+    background-position:right;
+}
+
+#MSearchSelect {
+    display:block;
+    position:absolute;
+    width:20px;
+    height:19px;
+}
+
+.left #MSearchSelect {
+    left:4px;
+}
+
+.right #MSearchSelect {
+    right:5px;
+}
+
+#MSearchField {
+    display:block;
+    position:absolute;
+    height:19px;
+    background:url('search_m.png') repeat-x;
+    border:none;
+    width:115px;
+    margin-left:20px;
+    padding-left:4px;
+    color: #909090;
+    outline: none;
+    font: 9pt Arial, Verdana, sans-serif;
+    -webkit-border-radius: 0px;
+}
+
+#FSearchBox #MSearchField {
+    margin-left:15px;
+}
+
+#MSearchBox .right {
+    display:block;
+    position:absolute;
+    right:10px;
+    top:8px;
+    width:20px;
+    height:19px;
+    background:url('search_r.png') no-repeat;
+    background-position:left;
+}
+
+#MSearchClose {
+    display: none;
+    position: absolute;
+    top: 4px;
+    background : none;
+    border: none;
+    margin: 0px 4px 0px 0px;
+    padding: 0px 0px;
+    outline: none;
+}
+
+.left #MSearchClose {
+    left: 6px;
+}
+
+.right #MSearchClose {
+    right: 2px;
+}
+
+.MSearchBoxActive #MSearchField {
+    color: #000000;
+}
+
+/*---------------- Search filter selection */
+
+#MSearchSelectWindow {
+    display: none;
+    position: absolute;
+    left: 0; top: 0;
+    border: 1px solid #90A5CE;
+    background-color: #F9FAFC;
+    z-index: 10001;
+    padding-top: 4px;
+    padding-bottom: 4px;
+    -moz-border-radius: 4px;
+    -webkit-border-top-left-radius: 4px;
+    -webkit-border-top-right-radius: 4px;
+    -webkit-border-bottom-left-radius: 4px;
+    -webkit-border-bottom-right-radius: 4px;
+    -webkit-box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15);
+}
+
+.SelectItem {
+    font: 8pt Arial, Verdana, sans-serif;
+    padding-left:  2px;
+    padding-right: 12px;
+    border: 0px;
+}
+
+span.SelectionMark {
+    margin-right: 4px;
+    font-family: monospace;
+    outline-style: none;
+    text-decoration: none;
+}
+
+a.SelectItem {
+    display: block;
+    outline-style: none;
+    color: #000000; 
+    text-decoration: none;
+    padding-left:   6px;
+    padding-right: 12px;
+}
+
+a.SelectItem:focus,
+a.SelectItem:active {
+    color: #000000; 
+    outline-style: none;
+    text-decoration: none;
+}
+
+a.SelectItem:hover {
+    color: #FFFFFF;
+    background-color: #3D578C;
+    outline-style: none;
+    text-decoration: none;
+    cursor: pointer;
+    display: block;
+}
+
+/*---------------- Search results window */
+
+iframe#MSearchResults {
+    width: 60ex;
+    height: 15em;
+}
+
+#MSearchResultsWindow {
+    display: none;
+    position: absolute;
+    left: 0; top: 0;
+    border: 1px solid #000;
+    background-color: #EEF1F7;
+    z-index:10000;
+}
+
+/* ----------------------------------- */
+
+
+#SRIndex {
+    clear:both; 
+    padding-bottom: 15px;
+}
+
+.SREntry {
+    font-size: 10pt;
+    padding-left: 1ex;
+}
+
+.SRPage .SREntry {
+    font-size: 8pt;
+    padding: 1px 5px;
+}
+
+body.SRPage {
+    margin: 5px 2px;
+}
+
+.SRChildren {
+    padding-left: 3ex; padding-bottom: .5em 
+}
+
+.SRPage .SRChildren {
+    display: none;
+}
+
+.SRSymbol {
+    font-weight: bold; 
+    color: #425E97;
+    font-family: Arial, Verdana, sans-serif;
+    text-decoration: none;
+    outline: none;
+}
+
+a.SRScope {
+    display: block;
+    color: #425E97; 
+    font-family: Arial, Verdana, sans-serif;
+    text-decoration: none;
+    outline: none;
+}
+
+a.SRSymbol:focus, a.SRSymbol:active,
+a.SRScope:focus, a.SRScope:active {
+    text-decoration: underline;
+}
+
+span.SRScope {
+    padding-left: 4px;
+}
+
+.SRPage .SRStatus {
+    padding: 2px 5px;
+    font-size: 8pt;
+    font-style: italic;
+}
+
+.SRResult {
+    display: none;
+}
+
+DIV.searchresults {
+    margin-left: 10px;
+    margin-right: 10px;
+}
+
+/*---------------- External search page results */
+
+.searchresult {
+    background-color: #F0F3F8;
+}
+
+.pages b {
+   color: white;
+   padding: 5px 5px 3px 5px;
+   background-image: url("../tab_a.png");
+   background-repeat: repeat-x;
+   text-shadow: 0 1px 1px #000000;
+}
+
+.pages {
+    line-height: 17px;
+    margin-left: 4px;
+    text-decoration: none;
+}
+
+.hl {
+    font-weight: bold;
+}
+
+#searchresults {
+    margin-bottom: 20px;
+}
+
+.searchpages {
+    margin-top: 10px;
+}
+
diff --git a/docs/html/search/search.js b/docs/html/search/search.js
new file mode 100644
index 00000000..a554ab9c
--- /dev/null
+++ b/docs/html/search/search.js
@@ -0,0 +1,814 @@
+/*
+ @licstart  The following is the entire license notice for the
+ JavaScript code in this file.
+
+ Copyright (C) 1997-2017 by Dimitri van Heesch
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+ @licend  The above is the entire license notice
+ for the JavaScript code in this file
+ */
+function convertToId(search)
+{
+  var result = '';
+  for (i=0;i<search.length;i++)
+  {
+    var c = search.charAt(i);
+    var cn = c.charCodeAt(0);
+    if (c.match(/[a-z0-9\u0080-\uFFFF]/))
+    {
+      result+=c;
+    }
+    else if (cn<16)
+    {
+      result+="_0"+cn.toString(16);
+    }
+    else
+    {
+      result+="_"+cn.toString(16);
+    }
+  }
+  return result;
+}
+
+function getXPos(item)
+{
+  var x = 0;
+  if (item.offsetWidth)
+  {
+    while (item && item!=document.body)
+    {
+      x   += item.offsetLeft;
+      item = item.offsetParent;
+    }
+  }
+  return x;
+}
+
+function getYPos(item)
+{
+  var y = 0;
+  if (item.offsetWidth)
+  {
+     while (item && item!=document.body)
+     {
+       y   += item.offsetTop;
+       item = item.offsetParent;
+     }
+  }
+  return y;
+}
+
+/* A class handling everything associated with the search panel.
+
+   Parameters:
+   name - The name of the global variable that will be
+          storing this instance.  Is needed to be able to set timeouts.
+   resultPath - path to use for external files
+*/
+function SearchBox(name, resultsPath, inFrame, label)
+{
+  if (!name || !resultsPath) {  alert("Missing parameters to SearchBox."); }
+
+  // ---------- Instance variables
+  this.name                  = name;
+  this.resultsPath           = resultsPath;
+  this.keyTimeout            = 0;
+  this.keyTimeoutLength      = 500;
+  this.closeSelectionTimeout = 300;
+  this.lastSearchValue       = "";
+  this.lastResultsPage       = "";
+  this.hideTimeout           = 0;
+  this.searchIndex           = 0;
+  this.searchActive          = false;
+  this.insideFrame           = inFrame;
+  this.searchLabel           = label;
+
+  // ----------- DOM Elements
+
+  this.DOMSearchField = function()
+  {  return document.getElementById("MSearchField");  }
+
+  this.DOMSearchSelect = function()
+  {  return document.getElementById("MSearchSelect");  }
+
+  this.DOMSearchSelectWindow = function()
+  {  return document.getElementById("MSearchSelectWindow");  }
+
+  this.DOMPopupSearchResults = function()
+  {  return document.getElementById("MSearchResults");  }
+
+  this.DOMPopupSearchResultsWindow = function()
+  {  return document.getElementById("MSearchResultsWindow");  }
+
+  this.DOMSearchClose = function()
+  {  return document.getElementById("MSearchClose"); }
+
+  this.DOMSearchBox = function()
+  {  return document.getElementById("MSearchBox");  }
+
+  // ------------ Event Handlers
+
+  // Called when focus is added or removed from the search field.
+  this.OnSearchFieldFocus = function(isActive)
+  {
+    this.Activate(isActive);
+  }
+
+  this.OnSearchSelectShow = function()
+  {
+    var searchSelectWindow = this.DOMSearchSelectWindow();
+    var searchField        = this.DOMSearchSelect();
+
+    if (this.insideFrame)
+    {
+      var left = getXPos(searchField);
+      var top  = getYPos(searchField);
+      left += searchField.offsetWidth + 6;
+      top += searchField.offsetHeight;
+
+      // show search selection popup
+      searchSelectWindow.style.display='block';
+      left -= searchSelectWindow.offsetWidth;
+      searchSelectWindow.style.left =  left + 'px';
+      searchSelectWindow.style.top  =  top  + 'px';
+    }
+    else
+    {
+      var left = getXPos(searchField);
+      var top  = getYPos(searchField);
+      top += searchField.offsetHeight;
+
+      // show search selection popup
+      searchSelectWindow.style.display='block';
+      searchSelectWindow.style.left =  left + 'px';
+      searchSelectWindow.style.top  =  top  + 'px';
+    }
+
+    // stop selection hide timer
+    if (this.hideTimeout)
+    {
+      clearTimeout(this.hideTimeout);
+      this.hideTimeout=0;
+    }
+    return false; // to avoid "image drag" default event
+  }
+
+  this.OnSearchSelectHide = function()
+  {
+    this.hideTimeout = setTimeout(this.name +".CloseSelectionWindow()",
+                                  this.closeSelectionTimeout);
+  }
+
+  // Called when the content of the search field is changed.
+  this.OnSearchFieldChange = function(evt)
+  {
+    if (this.keyTimeout) // kill running timer
+    {
+      clearTimeout(this.keyTimeout);
+      this.keyTimeout = 0;
+    }
+
+    var e  = (evt) ? evt : window.event; // for IE
+    if (e.keyCode==40 || e.keyCode==13)
+    {
+      if (e.shiftKey==1)
+      {
+        this.OnSearchSelectShow();
+        var win=this.DOMSearchSelectWindow();
+        for (i=0;i<win.childNodes.length;i++)
+        {
+          var child = win.childNodes[i]; // get span within a
+          if (child.className=='SelectItem')
+          {
+            child.focus();
+            return;
+          }
+        }
+        return;
+      }
+      else if (window.frames.MSearchResults.searchResults)
+      {
+        var elem = window.frames.MSearchResults.searchResults.NavNext(0);
+        if (elem) elem.focus();
+      }
+    }
+    else if (e.keyCode==27) // Escape out of the search field
+    {
+      this.DOMSearchField().blur();
+      this.DOMPopupSearchResultsWindow().style.display = 'none';
+      this.DOMSearchClose().style.display = 'none';
+      this.lastSearchValue = '';
+      this.Activate(false);
+      return;
+    }
+
+    // strip whitespaces
+    var searchValue = this.DOMSearchField().value.replace(/ +/g, "");
+
+    if (searchValue != this.lastSearchValue) // search value has changed
+    {
+      if (searchValue != "") // non-empty search
+      {
+        // set timer for search update
+        this.keyTimeout = setTimeout(this.name + '.Search()',
+                                     this.keyTimeoutLength);
+      }
+      else // empty search field
+      {
+        this.DOMPopupSearchResultsWindow().style.display = 'none';
+        this.DOMSearchClose().style.display = 'none';
+        this.lastSearchValue = '';
+      }
+    }
+  }
+
+  this.SelectItemCount = function(id)
+  {
+    var count=0;
+    var win=this.DOMSearchSelectWindow();
+    for (i=0;i<win.childNodes.length;i++)
+    {
+      var child = win.childNodes[i]; // get span within a
+      if (child.className=='SelectItem')
+      {
+        count++;
+      }
+    }
+    return count;
+  }
+
+  this.SelectItemSet = function(id)
+  {
+    var i,j=0;
+    var win=this.DOMSearchSelectWindow();
+    for (i=0;i<win.childNodes.length;i++)
+    {
+      var child = win.childNodes[i]; // get span within a
+      if (child.className=='SelectItem')
+      {
+        var node = child.firstChild;
+        if (j==id)
+        {
+          node.innerHTML='&#8226;';
+        }
+        else
+        {
+          node.innerHTML='&#160;';
+        }
+        j++;
+      }
+    }
+  }
+
+  // Called when an search filter selection is made.
+  // set item with index id as the active item
+  this.OnSelectItem = function(id)
+  {
+    this.searchIndex = id;
+    this.SelectItemSet(id);
+    var searchValue = this.DOMSearchField().value.replace(/ +/g, "");
+    if (searchValue!="" && this.searchActive) // something was found -> do a search
+    {
+      this.Search();
+    }
+  }
+
+  this.OnSearchSelectKey = function(evt)
+  {
+    var e = (evt) ? evt : window.event; // for IE
+    if (e.keyCode==40 && this.searchIndex<this.SelectItemCount()) // Down
+    {
+      this.searchIndex++;
+      this.OnSelectItem(this.searchIndex);
+    }
+    else if (e.keyCode==38 && this.searchIndex>0) // Up
+    {
+      this.searchIndex--;
+      this.OnSelectItem(this.searchIndex);
+    }
+    else if (e.keyCode==13 || e.keyCode==27)
+    {
+      this.OnSelectItem(this.searchIndex);
+      this.CloseSelectionWindow();
+      this.DOMSearchField().focus();
+    }
+    return false;
+  }
+
+  // --------- Actions
+
+  // Closes the results window.
+  this.CloseResultsWindow = function()
+  {
+    this.DOMPopupSearchResultsWindow().style.display = 'none';
+    this.DOMSearchClose().style.display = 'none';
+    this.Activate(false);
+  }
+
+  this.CloseSelectionWindow = function()
+  {
+    this.DOMSearchSelectWindow().style.display = 'none';
+  }
+
+  // Performs a search.
+  this.Search = function()
+  {
+    this.keyTimeout = 0;
+
+    // strip leading whitespace
+    var searchValue = this.DOMSearchField().value.replace(/^ +/, "");
+
+    var code = searchValue.toLowerCase().charCodeAt(0);
+    var idxChar = searchValue.substr(0, 1).toLowerCase();
+    if ( 0xD800 <= code && code <= 0xDBFF && searchValue > 1) // surrogate pair
+    {
+      idxChar = searchValue.substr(0, 2);
+    }
+
+    var resultsPage;
+    var resultsPageWithSearch;
+    var hasResultsPage;
+
+    var idx = indexSectionsWithContent[this.searchIndex].indexOf(idxChar);
+    if (idx!=-1)
+    {
+       var hexCode=idx.toString(16);
+       resultsPage = this.resultsPath + '/' + indexSectionNames[this.searchIndex] + '_' + hexCode + '.html';
+       resultsPageWithSearch = resultsPage+'?'+escape(searchValue);
+       hasResultsPage = true;
+    }
+    else // nothing available for this search term
+    {
+       resultsPage = this.resultsPath + '/nomatches.html';
+       resultsPageWithSearch = resultsPage;
+       hasResultsPage = false;
+    }
+
+    window.frames.MSearchResults.location = resultsPageWithSearch;
+    var domPopupSearchResultsWindow = this.DOMPopupSearchResultsWindow();
+
+    if (domPopupSearchResultsWindow.style.display!='block')
+    {
+       var domSearchBox = this.DOMSearchBox();
+       this.DOMSearchClose().style.display = 'inline';
+       if (this.insideFrame)
+       {
+         var domPopupSearchResults = this.DOMPopupSearchResults();
+         domPopupSearchResultsWindow.style.position = 'relative';
+         domPopupSearchResultsWindow.style.display  = 'block';
+         var width = document.body.clientWidth - 8; // the -8 is for IE :-(
+         domPopupSearchResultsWindow.style.width    = width + 'px';
+         domPopupSearchResults.style.width          = width + 'px';
+       }
+       else
+       {
+         var domPopupSearchResults = this.DOMPopupSearchResults();
+         var left = getXPos(domSearchBox) + 150; // domSearchBox.offsetWidth;
+         var top  = getYPos(domSearchBox) + 20;  // domSearchBox.offsetHeight + 1;
+         domPopupSearchResultsWindow.style.display = 'block';
+         left -= domPopupSearchResults.offsetWidth;
+         domPopupSearchResultsWindow.style.top     = top  + 'px';
+         domPopupSearchResultsWindow.style.left    = left + 'px';
+       }
+    }
+
+    this.lastSearchValue = searchValue;
+    this.lastResultsPage = resultsPage;
+  }
+
+  // -------- Activation Functions
+
+  // Activates or deactivates the search panel, resetting things to
+  // their default values if necessary.
+  this.Activate = function(isActive)
+  {
+    if (isActive || // open it
+        this.DOMPopupSearchResultsWindow().style.display == 'block'
+       )
+    {
+      this.DOMSearchBox().className = 'MSearchBoxActive';
+
+      var searchField = this.DOMSearchField();
+
+      if (searchField.value == this.searchLabel) // clear "Search" term upon entry
+      {
+        searchField.value = '';
+        this.searchActive = true;
+      }
+    }
+    else if (!isActive) // directly remove the panel
+    {
+      this.DOMSearchBox().className = 'MSearchBoxInactive';
+      this.DOMSearchField().value   = this.searchLabel;
+      this.searchActive             = false;
+      this.lastSearchValue          = ''
+      this.lastResultsPage          = '';
+    }
+  }
+}
+
+// -----------------------------------------------------------------------
+
+// The class that handles everything on the search results page.
+function SearchResults(name)
+{
+    // The number of matches from the last run of <Search()>.
+    this.lastMatchCount = 0;
+    this.lastKey = 0;
+    this.repeatOn = false;
+
+    // Toggles the visibility of the passed element ID.
+    this.FindChildElement = function(id)
+    {
+      var parentElement = document.getElementById(id);
+      var element = parentElement.firstChild;
+
+      while (element && element!=parentElement)
+      {
+        if (element.nodeName == 'DIV' && element.className == 'SRChildren')
+        {
+          return element;
+        }
+
+        if (element.nodeName == 'DIV' && element.hasChildNodes())
+        {
+           element = element.firstChild;
+        }
+        else if (element.nextSibling)
+        {
+           element = element.nextSibling;
+        }
+        else
+        {
+          do
+          {
+            element = element.parentNode;
+          }
+          while (element && element!=parentElement && !element.nextSibling);
+
+          if (element && element!=parentElement)
+          {
+            element = element.nextSibling;
+          }
+        }
+      }
+    }
+
+    this.Toggle = function(id)
+    {
+      var element = this.FindChildElement(id);
+      if (element)
+      {
+        if (element.style.display == 'block')
+        {
+          element.style.display = 'none';
+        }
+        else
+        {
+          element.style.display = 'block';
+        }
+      }
+    }
+
+    // Searches for the passed string.  If there is no parameter,
+    // it takes it from the URL query.
+    //
+    // Always returns true, since other documents may try to call it
+    // and that may or may not be possible.
+    this.Search = function(search)
+    {
+      if (!search) // get search word from URL
+      {
+        search = window.location.search;
+        search = search.substring(1);  // Remove the leading '?'
+        search = unescape(search);
+      }
+
+      search = search.replace(/^ +/, ""); // strip leading spaces
+      search = search.replace(/ +$/, ""); // strip trailing spaces
+      search = search.toLowerCase();
+      search = convertToId(search);
+
+      var resultRows = document.getElementsByTagName("div");
+      var matches = 0;
+
+      var i = 0;
+      while (i < resultRows.length)
+      {
+        var row = resultRows.item(i);
+        if (row.className == "SRResult")
+        {
+          var rowMatchName = row.id.toLowerCase();
+          rowMatchName = rowMatchName.replace(/^sr\d*_/, ''); // strip 'sr123_'
+
+          if (search.length<=rowMatchName.length &&
+             rowMatchName.substr(0, search.length)==search)
+          {
+            row.style.display = 'block';
+            matches++;
+          }
+          else
+          {
+            row.style.display = 'none';
+          }
+        }
+        i++;
+      }
+      document.getElementById("Searching").style.display='none';
+      if (matches == 0) // no results
+      {
+        document.getElementById("NoMatches").style.display='block';
+      }
+      else // at least one result
+      {
+        document.getElementById("NoMatches").style.display='none';
+      }
+      this.lastMatchCount = matches;
+      return true;
+    }
+
+    // return the first item with index index or higher that is visible
+    this.NavNext = function(index)
+    {
+      var focusItem;
+      while (1)
+      {
+        var focusName = 'Item'+index;
+        focusItem = document.getElementById(focusName);
+        if (focusItem && focusItem.parentNode.parentNode.style.display=='block')
+        {
+          break;
+        }
+        else if (!focusItem) // last element
+        {
+          break;
+        }
+        focusItem=null;
+        index++;
+      }
+      return focusItem;
+    }
+
+    this.NavPrev = function(index)
+    {
+      var focusItem;
+      while (1)
+      {
+        var focusName = 'Item'+index;
+        focusItem = document.getElementById(focusName);
+        if (focusItem && focusItem.parentNode.parentNode.style.display=='block')
+        {
+          break;
+        }
+        else if (!focusItem) // last element
+        {
+          break;
+        }
+        focusItem=null;
+        index--;
+      }
+      return focusItem;
+    }
+
+    this.ProcessKeys = function(e)
+    {
+      if (e.type == "keydown")
+      {
+        this.repeatOn = false;
+        this.lastKey = e.keyCode;
+      }
+      else if (e.type == "keypress")
+      {
+        if (!this.repeatOn)
+        {
+          if (this.lastKey) this.repeatOn = true;
+          return false; // ignore first keypress after keydown
+        }
+      }
+      else if (e.type == "keyup")
+      {
+        this.lastKey = 0;
+        this.repeatOn = false;
+      }
+      return this.lastKey!=0;
+    }
+
+    this.Nav = function(evt,itemIndex)
+    {
+      var e  = (evt) ? evt : window.event; // for IE
+      if (e.keyCode==13) return true;
+      if (!this.ProcessKeys(e)) return false;
+
+      if (this.lastKey==38) // Up
+      {
+        var newIndex = itemIndex-1;
+        var focusItem = this.NavPrev(newIndex);
+        if (focusItem)
+        {
+          var child = this.FindChildElement(focusItem.parentNode.parentNode.id);
+          if (child && child.style.display == 'block') // children visible
+          {
+            var n=0;
+            var tmpElem;
+            while (1) // search for last child
+            {
+              tmpElem = document.getElementById('Item'+newIndex+'_c'+n);
+              if (tmpElem)
+              {
+                focusItem = tmpElem;
+              }
+              else // found it!
+              {
+                break;
+              }
+              n++;
+            }
+          }
+        }
+        if (focusItem)
+        {
+          focusItem.focus();
+        }
+        else // return focus to search field
+        {
+           parent.document.getElementById("MSearchField").focus();
+        }
+      }
+      else if (this.lastKey==40) // Down
+      {
+        var newIndex = itemIndex+1;
+        var focusItem;
+        var item = document.getElementById('Item'+itemIndex);
+        var elem = this.FindChildElement(item.parentNode.parentNode.id);
+        if (elem && elem.style.display == 'block') // children visible
+        {
+          focusItem = document.getElementById('Item'+itemIndex+'_c0');
+        }
+        if (!focusItem) focusItem = this.NavNext(newIndex);
+        if (focusItem)  focusItem.focus();
+      }
+      else if (this.lastKey==39) // Right
+      {
+        var item = document.getElementById('Item'+itemIndex);
+        var elem = this.FindChildElement(item.parentNode.parentNode.id);
+        if (elem) elem.style.display = 'block';
+      }
+      else if (this.lastKey==37) // Left
+      {
+        var item = document.getElementById('Item'+itemIndex);
+        var elem = this.FindChildElement(item.parentNode.parentNode.id);
+        if (elem) elem.style.display = 'none';
+      }
+      else if (this.lastKey==27) // Escape
+      {
+        parent.searchBox.CloseResultsWindow();
+        parent.document.getElementById("MSearchField").focus();
+      }
+      else if (this.lastKey==13) // Enter
+      {
+        return true;
+      }
+      return false;
+    }
+
+    this.NavChild = function(evt,itemIndex,childIndex)
+    {
+      var e  = (evt) ? evt : window.event; // for IE
+      if (e.keyCode==13) return true;
+      if (!this.ProcessKeys(e)) return false;
+
+      if (this.lastKey==38) // Up
+      {
+        if (childIndex>0)
+        {
+          var newIndex = childIndex-1;
+          document.getElementById('Item'+itemIndex+'_c'+newIndex).focus();
+        }
+        else // already at first child, jump to parent
+        {
+          document.getElementById('Item'+itemIndex).focus();
+        }
+      }
+      else if (this.lastKey==40) // Down
+      {
+        var newIndex = childIndex+1;
+        var elem = document.getElementById('Item'+itemIndex+'_c'+newIndex);
+        if (!elem) // last child, jump to parent next parent
+        {
+          elem = this.NavNext(itemIndex+1);
+        }
+        if (elem)
+        {
+          elem.focus();
+        }
+      }
+      else if (this.lastKey==27) // Escape
+      {
+        parent.searchBox.CloseResultsWindow();
+        parent.document.getElementById("MSearchField").focus();
+      }
+      else if (this.lastKey==13) // Enter
+      {
+        return true;
+      }
+      return false;
+    }
+}
+
+function setKeyActions(elem,action)
+{
+  elem.setAttribute('onkeydown',action);
+  elem.setAttribute('onkeypress',action);
+  elem.setAttribute('onkeyup',action);
+}
+
+function setClassAttr(elem,attr)
+{
+  elem.setAttribute('class',attr);
+  elem.setAttribute('className',attr);
+}
+
+function createResults()
+{
+  var results = document.getElementById("SRResults");
+  for (var e=0; e<searchData.length; e++)
+  {
+    var id = searchData[e][0];
+    var srResult = document.createElement('div');
+    srResult.setAttribute('id','SR_'+id);
+    setClassAttr(srResult,'SRResult');
+    var srEntry = document.createElement('div');
+    setClassAttr(srEntry,'SREntry');
+    var srLink = document.createElement('a');
+    srLink.setAttribute('id','Item'+e);
+    setKeyActions(srLink,'return searchResults.Nav(event,'+e+')');
+    setClassAttr(srLink,'SRSymbol');
+    srLink.innerHTML = searchData[e][1][0];
+    srEntry.appendChild(srLink);
+    if (searchData[e][1].length==2) // single result
+    {
+      srLink.setAttribute('href',searchData[e][1][1][0]);
+      if (searchData[e][1][1][1])
+      {
+       srLink.setAttribute('target','_parent');
+      }
+      var srScope = document.createElement('span');
+      setClassAttr(srScope,'SRScope');
+      srScope.innerHTML = searchData[e][1][1][2];
+      srEntry.appendChild(srScope);
+    }
+    else // multiple results
+    {
+      srLink.setAttribute('href','javascript:searchResults.Toggle("SR_'+id+'")');
+      var srChildren = document.createElement('div');
+      setClassAttr(srChildren,'SRChildren');
+      for (var c=0; c<searchData[e][1].length-1; c++)
+      {
+        var srChild = document.createElement('a');
+        srChild.setAttribute('id','Item'+e+'_c'+c);
+        setKeyActions(srChild,'return searchResults.NavChild(event,'+e+','+c+')');
+        setClassAttr(srChild,'SRScope');
+        srChild.setAttribute('href',searchData[e][1][c+1][0]);
+        if (searchData[e][1][c+1][1])
+        {
+         srChild.setAttribute('target','_parent');
+        }
+        srChild.innerHTML = searchData[e][1][c+1][2];
+        srChildren.appendChild(srChild);
+      }
+      srEntry.appendChild(srChildren);
+    }
+    srResult.appendChild(srEntry);
+    results.appendChild(srResult);
+  }
+}
+
+function init_search()
+{
+  var results = document.getElementById("MSearchSelectWindow");
+  for (var key in indexSectionLabels)
+  {
+    var link = document.createElement('a');
+    link.setAttribute('class','SelectItem');
+    link.setAttribute('onclick','searchBox.OnSelectItem('+key+')');
+    link.href='javascript:void(0)';
+    link.innerHTML='<span class="SelectionMark">&#160;</span>'+indexSectionLabels[key];
+    results.appendChild(link);
+  }
+  searchBox.OnSelectItem(0);
+}
+/* @license-end */
diff --git a/docs/html/search/search_l.png b/docs/html/search/search_l.png
new file mode 100644
index 00000000..fd5f7daa
Binary files /dev/null and b/docs/html/search/search_l.png differ
diff --git a/docs/html/search/search_m.png b/docs/html/search/search_m.png
new file mode 100644
index 00000000..b429a16b
Binary files /dev/null and b/docs/html/search/search_m.png differ
diff --git a/docs/html/search/search_r.png b/docs/html/search/search_r.png
new file mode 100644
index 00000000..1af5d21e
Binary files /dev/null and b/docs/html/search/search_r.png differ
diff --git a/docs/html/search/searchdata.js b/docs/html/search/searchdata.js
new file mode 100644
index 00000000..15a87521
--- /dev/null
+++ b/docs/html/search/searchdata.js
@@ -0,0 +1,30 @@
+var indexSectionsWithContent =
+{
+  0: "_abcdefghijklmnopqrstuvwxyz~",
+  1: "abcdefghijklmnopqrstuvwyz",
+  2: "ps",
+  3: "_abcdefghijklmnopqrstuvwxyz~",
+  4: "abdefgilmnoprstuvwz",
+  5: "g"
+};
+
+var indexSectionNames =
+{
+  0: "all",
+  1: "classes",
+  2: "namespaces",
+  3: "functions",
+  4: "variables",
+  5: "pages"
+};
+
+var indexSectionLabels =
+{
+  0: "All",
+  1: "Classes",
+  2: "Namespaces",
+  3: "Functions",
+  4: "Variables",
+  5: "Pages"
+};
+
diff --git a/docs/html/search/variables_0.html b/docs/html/search/variables_0.html
new file mode 100644
index 00000000..bf3eba5c
--- /dev/null
+++ b/docs/html/search/variables_0.html
@@ -0,0 +1,30 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html><head><title></title>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<link rel="stylesheet" type="text/css" href="search.css"/>
+<script type="text/javascript" src="variables_0.js"></script>
+<script type="text/javascript" src="search.js"></script>
+</head>
+<body class="SRPage">
+<div id="SRIndex">
+<div class="SRStatus" id="Loading">Loading...</div>
+<div id="SRResults"></div>
+<script type="text/javascript"><!--
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+createResults();
+/* @license-end */
+--></script>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+<script type="text/javascript"><!--
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+document.getElementById("Loading").style.display="none";
+document.getElementById("NoMatches").style.display="none";
+var searchResults = new SearchResults("searchResults");
+searchResults.Search();
+/* @license-end */
+--></script>
+</div>
+</body>
+</html>
diff --git a/docs/html/search/variables_0.js b/docs/html/search/variables_0.js
new file mode 100644
index 00000000..406a7af5
--- /dev/null
+++ b/docs/html/search/variables_0.js
@@ -0,0 +1,6 @@
+var searchData=
+[
+  ['all_3692',['ALL',['../class_log.html#a4249272125f8149b2d042101bcc6b49f',1,'Log']]],
+  ['all_5fparameter_5fnames_3693',['all_parameter_names',['../class_corpus.html#a084591c7f27b8ad55bc68266fe461161',1,'Corpus']]],
+  ['average_3694',['average',['../class_word_series.html#a3422e982c01b71612924ac5f1f0d2181',1,'WordSeries']]]
+];
diff --git a/docs/html/search/variables_1.html b/docs/html/search/variables_1.html
new file mode 100644
index 00000000..49fe59a1
--- /dev/null
+++ b/docs/html/search/variables_1.html
@@ -0,0 +1,30 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html><head><title></title>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<link rel="stylesheet" type="text/css" href="search.css"/>
+<script type="text/javascript" src="variables_1.js"></script>
+<script type="text/javascript" src="search.js"></script>
+</head>
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+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">speciation_strategy.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_SPECIATION_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_SPECIATION_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;functional&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">std::function</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160; </div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
+<div class="line"><a name="l00013"></a><span class="lineno"><a class="line" href="class_speciation_strategy.html">   13</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_speciation_strategy.html">SpeciationStrategy</a> {</div>
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+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;        <span class="keyword">virtual</span> int32_t <a class="code" href="class_speciation_strategy.html#a7699a7050ed5a66693f19e834e9ba082">get_generated_genomes</a>() <span class="keyword">const</span> = 0;</div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160; </div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;        <span class="keyword">virtual</span> int32_t <a class="code" href="class_speciation_strategy.html#a1f07309130568d8cc79da44c8da6ca69">get_inserted_genomes</a>() <span class="keyword">const</span> = 0;</div>
+<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160; </div>
+<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="class_speciation_strategy.html#afa3f2d35da2172a32ed06588ef09d4d0">get_best_fitness</a>() = 0;</div>
+<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160; </div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">double</span> <a class="code" href="class_speciation_strategy.html#a6bdef578fe33c628a81db35d75eaa473">get_worst_fitness</a>() = 0;</div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160; </div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;        <span class="keyword">virtual</span> <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* <a class="code" href="class_speciation_strategy.html#ad0796098d09c25bfee14d9f264bcba2d">get_best_genome</a>() = 0;</div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160; </div>
+<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;        <span class="keyword">virtual</span> <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* <a class="code" href="class_speciation_strategy.html#ae84e9c1e0eaf02886b41b1d9adf488f4">get_worst_genome</a>() = 0;</div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160; </div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;        <span class="keyword">virtual</span> int32_t <a class="code" href="class_speciation_strategy.html#a1fd87178f38052aa934312e49819e509">insert_genome</a>(<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* genome) = 0;</div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160; </div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;        <span class="keyword">virtual</span> <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* <a class="code" href="class_speciation_strategy.html#a76f36f0dd7c47727aef912d48f0fa26b">generate_genome</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng_0_1, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <span class="keyword">function</span>&lt;<span class="keywordtype">void</span> (int32_t, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*)&gt; &amp;mutate, <span class="keyword">function</span>&lt;<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* (<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *)&gt; &amp;crossover) = 0;</div>
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+<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="class_speciation_strategy.html#a1d44f4c87ab00182e61f0fb364f274a9">print</a>(<span class="keywordtype">string</span> indent = <span class="stringliteral">&quot;&quot;</span>) <span class="keyword">const</span> = 0;</div>
+<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160; </div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">string</span> <a class="code" href="class_speciation_strategy.html#a163f199bc1dbf37157942cd3778cca20">get_strategy_information_headers</a>() <span class="keyword">const</span> = 0;</div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160; </div>
+<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">string</span> <a class="code" href="class_speciation_strategy.html#a5c6bbff0c19e3d347cef936d7b357fc0">get_strategy_information_values</a>() <span class="keyword">const</span> = 0;</div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160; </div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        <span class="keyword">virtual</span> <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* get_global_best_genome() = 0;</div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;};</div>
+<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160; </div>
+<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160; </div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_speciation_strategy_html_ae84e9c1e0eaf02886b41b1d9adf488f4"><div class="ttname"><a href="class_speciation_strategy.html#ae84e9c1e0eaf02886b41b1d9adf488f4">SpeciationStrategy::get_worst_genome</a></div><div class="ttdeci">virtual RNN_Genome * get_worst_genome()=0</div><div class="ttdoc">Gets the the worst genome of all the islands.</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_a76f36f0dd7c47727aef912d48f0fa26b"><div class="ttname"><a href="class_speciation_strategy.html#a76f36f0dd7c47727aef912d48f0fa26b">SpeciationStrategy::generate_genome</a></div><div class="ttdeci">virtual RNN_Genome * generate_genome(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, function&lt; void(int32_t, RNN_Genome *)&gt; &amp;mutate, function&lt; RNN_Genome *(RNN_Genome *, RNN_Genome *)&gt; &amp;crossover)=0</div><div class="ttdoc">Generates a new genome.</div></div>
+<div class="ttc" id="afunction_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/utility/functional/function.html">std::function</a></div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_ad0796098d09c25bfee14d9f264bcba2d"><div class="ttname"><a href="class_speciation_strategy.html#ad0796098d09c25bfee14d9f264bcba2d">SpeciationStrategy::get_best_genome</a></div><div class="ttdeci">virtual RNN_Genome * get_best_genome()=0</div><div class="ttdoc">Gets the best genome of all the islands.</div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
+<div class="ttc" id="aclass_speciation_strategy_html"><div class="ttname"><a href="class_speciation_strategy.html">SpeciationStrategy</a></div><div class="ttdef"><b>Definition:</b> speciation_strategy.hxx:13</div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_a163f199bc1dbf37157942cd3778cca20"><div class="ttname"><a href="class_speciation_strategy.html#a163f199bc1dbf37157942cd3778cca20">SpeciationStrategy::get_strategy_information_headers</a></div><div class="ttdeci">virtual string get_strategy_information_headers() const =0</div><div class="ttdoc">Gets speciation strategy information headers for logs.</div></div>
+<div class="ttc" id="auniform_real_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a></div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_a1fd87178f38052aa934312e49819e509"><div class="ttname"><a href="class_speciation_strategy.html#a1fd87178f38052aa934312e49819e509">SpeciationStrategy::insert_genome</a></div><div class="ttdeci">virtual int32_t insert_genome(RNN_Genome *genome)=0</div><div class="ttdoc">Inserts a copy of the genome into this speciation strategy.</div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_a1f07309130568d8cc79da44c8da6ca69"><div class="ttname"><a href="class_speciation_strategy.html#a1f07309130568d8cc79da44c8da6ca69">SpeciationStrategy::get_inserted_genomes</a></div><div class="ttdeci">virtual int32_t get_inserted_genomes() const =0</div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_a7699a7050ed5a66693f19e834e9ba082"><div class="ttname"><a href="class_speciation_strategy.html#a7699a7050ed5a66693f19e834e9ba082">SpeciationStrategy::get_generated_genomes</a></div><div class="ttdeci">virtual int32_t get_generated_genomes() const =0</div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_afa3f2d35da2172a32ed06588ef09d4d0"><div class="ttname"><a href="class_speciation_strategy.html#afa3f2d35da2172a32ed06588ef09d4d0">SpeciationStrategy::get_best_fitness</a></div><div class="ttdeci">virtual double get_best_fitness()=0</div><div class="ttdoc">Gets the fitness of the best genome of all the islands.</div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_a5c6bbff0c19e3d347cef936d7b357fc0"><div class="ttname"><a href="class_speciation_strategy.html#a5c6bbff0c19e3d347cef936d7b357fc0">SpeciationStrategy::get_strategy_information_values</a></div><div class="ttdeci">virtual string get_strategy_information_values() const =0</div><div class="ttdoc">Gets speciation strategy information values for logs.</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html"><div class="ttname"><a href="class_r_n_n___genome.html">RNN_Genome</a></div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:37</div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_a6bdef578fe33c628a81db35d75eaa473"><div class="ttname"><a href="class_speciation_strategy.html#a6bdef578fe33c628a81db35d75eaa473">SpeciationStrategy::get_worst_fitness</a></div><div class="ttdeci">virtual double get_worst_fitness()=0</div><div class="ttdoc">Gets the fitness of the worst genome of all the islands.</div></div>
+<div class="ttc" id="aclass_speciation_strategy_html_a1d44f4c87ab00182e61f0fb364f274a9"><div class="ttname"><a href="class_speciation_strategy.html#a1d44f4c87ab00182e61f0fb364f274a9">SpeciationStrategy::print</a></div><div class="ttdeci">virtual void print(string indent=&quot;&quot;) const =0</div><div class="ttdoc">Prints out all the island's populations.</div></div>
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
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+<li class="navelem"><a class="el" href="dir_1c7377a75209772c3f4d4607660992d2.html">rnn</a></li>  </ul>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">species.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_NEAT_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#define EXAMM_NEAT_STRATEGY_HXX</span></div>
+<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160; </div>
+<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;functional&gt;</span></div>
+<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/utility/functional/function.html">std::function</a>;</div>
+<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160; </div>
+<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &lt;algorithm&gt;</span></div>
+<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/algorithm/sort.html">std::sort</a>;</div>
+<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/algorithm/upper_bound.html">std::upper_bound</a>;</div>
+<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160; </div>
+<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div>
+<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a>;</div>
+<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a>;</div>
+<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160; </div>
+<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
+<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="keyword">using</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a>;</div>
+<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160; </div>
+<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
+<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160; </div>
+<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="preprocessor">#include &quot;rnn_genome.hxx&quot;</span></div>
+<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160; </div>
+<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160; </div>
+<div class="line"><a name="l00023"></a><span class="lineno"><a class="line" href="class_species.html">   23</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_species.html">Species</a> {</div>
+<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;    <span class="keyword">private</span>:</div>
+<div class="line"><a name="l00025"></a><span class="lineno"><a class="line" href="class_species.html#a2e22624d59864dbecd5ee16103b458bd">   25</a></span>&#160;        int32_t <a class="code" href="class_species.html#a2e22624d59864dbecd5ee16103b458bd">id</a>; </div>
+<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;        <span class="comment">// int32_t latest_inserted_generation_id; /**&lt; The latest generation id of genome being generated, including the ones doing backprop by workers */</span></div>
+<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160; </div>
+<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int32_t&gt;</a> inserted_genome_id;</div>
+<div class="line"><a name="l00033"></a><span class="lineno"><a class="line" href="class_species.html#a6b156c1f48620bc39bc9efe6c9324e81">   33</a></span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Genome *&gt;</a> <a class="code" href="class_species.html#a6b156c1f48620bc39bc9efe6c9324e81">genomes</a>;</div>
+<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160; </div>
+<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;        int32_t species_not_improving_count;</div>
+<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160; </div>
+<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;    <span class="keyword">public</span>:</div>
+<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;        <a class="code" href="class_species.html#a58b75aebb5ad400b89cb41e5d7700092">Species</a>(int32_t <span class="keywordtype">id</span>);</div>
+<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160; </div>
+<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160; </div>
+<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_species.html#a2e3034b48d9ed1f263128ffc8ca3a295">get_best_fitness</a>();</div>
+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160; </div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;        <span class="keywordtype">double</span> <a class="code" href="class_species.html#a10669846e7646b47696d90838e379a94">get_worst_fitness</a>();</div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160; </div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *<a class="code" href="class_species.html#a01dcea3ec17810b46167e751b2e6f4cf">get_best_genome</a>();</div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160; </div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *<a class="code" href="class_species.html#a0a224a20baa5eb5055dada490c738d30">get_worst_genome</a>();</div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160; </div>
+<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> *<a class="code" href="class_species.html#afceb50adb6350b2576e897c30380fee5">get_random_genome</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng_0_1, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator);</div>
+<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160; </div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;        int32_t <a class="code" href="class_species.html#af9978e8876f3d43c5238225ad7b8de34">size</a>();</div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160; </div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;        int32_t <a class="code" href="class_species.html#aac66b182441d124023b4df1167c7bc35">contains</a>(<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* genome);</div>
+<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160; </div>
+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_species.html#add70418d8b64a815998e66c89824d646">copy_random_genome</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng_0_1, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> **genome);</div>
+<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160; </div>
+<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_species.html#a1f3a1b23040cc266a8c9e49436f0c8a7">copy_two_random_genomes</a>(<a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">uniform_real_distribution&lt;double&gt;</a> &amp;rng_0_1, <a class="codeRef" href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">minstd_rand0</a> &amp;generator, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> **genome1, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a> **genome2);</div>
+<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160; </div>
+<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;        int32_t <a class="code" href="class_species.html#a459a9676c5c86837233c6cc4c3843475">insert_genome</a>(<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* genome);</div>
+<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160; </div>
+<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_species.html#a2e9e0780d547c253c8532b5866b7bd4d">print</a>(<span class="keywordtype">string</span> indent = <span class="stringliteral">&quot;&quot;</span>);</div>
+<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160; </div>
+<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;RNN_Genome *&gt;</a> get_genomes();</div>
+<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160; </div>
+<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;        <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>* get_latested_genome();</div>
+<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160; </div>
+<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;        <span class="keywordtype">void</span> fitness_sharing_remove(<span class="keywordtype">double</span> fitness_threshold, <span class="keyword">function</span>&lt;<span class="keywordtype">double</span> (<a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*, <a class="code" href="class_r_n_n___genome.html">RNN_Genome</a>*)&gt; &amp;get_distance);</div>
+<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160; </div>
+<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;        <span class="keywordtype">void</span> erase_species();</div>
+<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160; </div>
+<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;        int32_t get_species_not_improving_count();</div>
+<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160; </div>
+<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;        <span class="keywordtype">void</span> set_species_not_improving_count(int32_t count);</div>
+<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;};</div>
+<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160; </div>
+<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="aclass_species_html_a459a9676c5c86837233c6cc4c3843475"><div class="ttname"><a href="class_species.html#a459a9676c5c86837233c6cc4c3843475">Species::insert_genome</a></div><div class="ttdeci">int32_t insert_genome(RNN_Genome *genome)</div><div class="ttdoc">Inserts a genome into the island.</div><div class="ttdef"><b>Definition:</b> species.cxx:94</div></div>
+<div class="ttc" id="aclass_species_html_a2e3034b48d9ed1f263128ffc8ca3a295"><div class="ttname"><a href="class_species.html#a2e3034b48d9ed1f263128ffc8ca3a295">Species::get_best_fitness</a></div><div class="ttdeci">double get_best_fitness()</div><div class="ttdoc">Returns the fitness of the best genome in the island.</div><div class="ttdef"><b>Definition:</b> species.cxx:42</div></div>
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="afunction_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/utility/functional/function.html">std::function</a></div></div>
+<div class="ttc" id="alinear_congruential_engine_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/linear_congruential_engine.html">std::minstd_rand0</a></div></div>
+<div class="ttc" id="asort_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/algorithm/sort.html">std::sort</a></div><div class="ttdeci">T sort(T... args)</div></div>
+<div class="ttc" id="auniform_real_distribution_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/numeric/random/uniform_real_distribution.html">std::uniform_real_distribution</a></div></div>
+<div class="ttc" id="aclass_species_html_add70418d8b64a815998e66c89824d646"><div class="ttname"><a href="class_species.html#add70418d8b64a815998e66c89824d646">Species::copy_random_genome</a></div><div class="ttdeci">void copy_random_genome(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, RNN_Genome **genome)</div><div class="ttdoc">Selects a genome from the island at random and returns a copy of it.</div><div class="ttdef"><b>Definition:</b> species.cxx:69</div></div>
+<div class="ttc" id="aclass_species_html_a10669846e7646b47696d90838e379a94"><div class="ttname"><a href="class_species.html#a10669846e7646b47696d90838e379a94">Species::get_worst_fitness</a></div><div class="ttdeci">double get_worst_fitness()</div><div class="ttdoc">Returns the fitness of the worst genome in the island.</div><div class="ttdef"><b>Definition:</b> species.cxx:48</div></div>
+<div class="ttc" id="aclass_species_html_a2e9e0780d547c253c8532b5866b7bd4d"><div class="ttname"><a href="class_species.html#a2e9e0780d547c253c8532b5866b7bd4d">Species::print</a></div><div class="ttdeci">void print(string indent=&quot;&quot;)</div><div class="ttdoc">Prints out the state of this island.</div><div class="ttdef"><b>Definition:</b> species.cxx:158</div></div>
+<div class="ttc" id="aclass_species_html_a0a224a20baa5eb5055dada490c738d30"><div class="ttname"><a href="class_species.html#a0a224a20baa5eb5055dada490c738d30">Species::get_worst_genome</a></div><div class="ttdeci">RNN_Genome * get_worst_genome()</div><div class="ttdoc">Returns the worst genomme in the island.</div><div class="ttdef"><b>Definition:</b> species.cxx:29</div></div>
+<div class="ttc" id="aclass_species_html_a1f3a1b23040cc266a8c9e49436f0c8a7"><div class="ttname"><a href="class_species.html#a1f3a1b23040cc266a8c9e49436f0c8a7">Species::copy_two_random_genomes</a></div><div class="ttdeci">void copy_two_random_genomes(uniform_real_distribution&lt; double &gt; &amp;rng_0_1, minstd_rand0 &amp;generator, RNN_Genome **genome1, RNN_Genome **genome2)</div><div class="ttdoc">Selects two different genomes from the island at random and returns copies of them.</div><div class="ttdef"><b>Definition:</b> species.cxx:74</div></div>
+<div class="ttc" id="aclass_species_html_aac66b182441d124023b4df1167c7bc35"><div class="ttname"><a href="class_species.html#aac66b182441d124023b4df1167c7bc35">Species::contains</a></div><div class="ttdeci">int32_t contains(RNN_Genome *genome)</div><div class="ttdoc">Checks to see if a genome already exists in the island, using the RNN_Genome::equals method (which ch...</div><div class="ttdef"><b>Definition:</b> species.cxx:58</div></div>
+<div class="ttc" id="aupper_bound_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/algorithm/upper_bound.html">std::upper_bound</a></div><div class="ttdeci">T upper_bound(T... args)</div></div>
+<div class="ttc" id="aclass_species_html_a01dcea3ec17810b46167e751b2e6f4cf"><div class="ttname"><a href="class_species.html#a01dcea3ec17810b46167e751b2e6f4cf">Species::get_best_genome</a></div><div class="ttdeci">RNN_Genome * get_best_genome()</div><div class="ttdoc">Returns the best genomme in the island.</div><div class="ttdef"><b>Definition:</b> species.cxx:24</div></div>
+<div class="ttc" id="aclass_r_n_n___genome_html"><div class="ttname"><a href="class_r_n_n___genome.html">RNN_Genome</a></div><div class="ttdef"><b>Definition:</b> rnn_genome.hxx:37</div></div>
+<div class="ttc" id="aclass_species_html_af9978e8876f3d43c5238225ad7b8de34"><div class="ttname"><a href="class_species.html#af9978e8876f3d43c5238225ad7b8de34">Species::size</a></div><div class="ttdeci">int32_t size()</div><div class="ttdoc">Returns the size of the island.</div><div class="ttdef"><b>Definition:</b> species.cxx:54</div></div>
+<div class="ttc" id="aclass_species_html_a2e22624d59864dbecd5ee16103b458bd"><div class="ttname"><a href="class_species.html#a2e22624d59864dbecd5ee16103b458bd">Species::id</a></div><div class="ttdeci">int32_t id</div><div class="ttdoc">An integer ID for this species.</div><div class="ttdef"><b>Definition:</b> species.hxx:25</div></div>
+<div class="ttc" id="aclass_species_html"><div class="ttname"><a href="class_species.html">Species</a></div><div class="ttdef"><b>Definition:</b> species.hxx:23</div></div>
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+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+  <div class="headertitle">
+<div class="title">Coin Member List</div>  </div>
+</div><!--header-->
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+
+<p>This is the complete list of members for <a class="el" href="struct_coin.html">Coin</a>, including all inherited members.</p>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>symbols</b> (defined in <a class="el" href="struct_coin.html">Coin</a>)</td><td class="entry"><a class="el" href="struct_coin.html">Coin</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>weight</b> (defined in <a class="el" href="struct_coin.html">Coin</a>)</td><td class="entry"><a class="el" href="struct_coin.html">Coin</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Coin Struct Reference</title>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_coin-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Coin Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
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+<tr class="memitem:a1d6bc1176bb9fcbd9ca8c781c92ef432"><td class="memItemLeft" align="right" valign="top"><a id="a1d6bc1176bb9fcbd9ca8c781c92ef432"></a>
+<a class="el" href="structuivector.html">uivector</a>&#160;</td><td class="memItemRight" valign="bottom"><b>symbols</b></td></tr>
+<tr class="separator:a1d6bc1176bb9fcbd9ca8c781c92ef432"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0427f9a678a9ce031a254f40f06b3669"><td class="memItemLeft" align="right" valign="top"><a id="a0427f9a678a9ce031a254f40f06b3669"></a>
+float&#160;</td><td class="memItemRight" valign="bottom"><b>weight</b></td></tr>
+<tr class="separator:a0427f9a678a9ce031a254f40f06b3669"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/lodepng.cpp</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+  <div class="headertitle">
+<div class="title">Color Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_color.html">Color</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>blue</b> (defined in <a class="el" href="struct_color.html">Color</a>)</td><td class="entry"><a class="el" href="struct_color.html">Color</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>green</b> (defined in <a class="el" href="struct_color.html">Color</a>)</td><td class="entry"><a class="el" href="struct_color.html">Color</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>red</b> (defined in <a class="el" href="struct_color.html">Color</a>)</td><td class="entry"><a class="el" href="struct_color.html">Color</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
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+</a> 1.8.17
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+<!-- iframe showing the search results (closed by default) -->
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_color-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Color Struct Reference</div>  </div>
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+<div class="contents">
+<table class="memberdecls">
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+<tr class="memitem:ab940d17000c033788115329369f856cf"><td class="memItemLeft" align="right" valign="top"><a id="ab940d17000c033788115329369f856cf"></a>
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+int16_t&#160;</td><td class="memItemRight" valign="bottom"><b>blue</b></td></tr>
+<tr class="separator:a25e2945bf418857e52db0a549e7d3f81"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>common/<a class="el" href="color__table_8hxx_source.html">color_table.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+</table>
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+  <div class="headertitle">
+<div class="title">ColorProfile Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_color_profile.html">ColorProfile</a>, including all inherited members.</p>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>alpha</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>alpha_done</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>colored</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>colored_done</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>greybits</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>greybits_done</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>key</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>key_b</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>key_g</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>key_r</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>maxnumcolors</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>numcolors</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>numcolors_done</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>palette</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sixteenbit</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>sixteenbit_done</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>tree</b> (defined in <a class="el" href="struct_color_profile.html">ColorProfile</a>)</td><td class="entry"><a class="el" href="struct_color_profile.html">ColorProfile</a></td><td class="entry"></td></tr>
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+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_color_profile-members.html">List of all members</a>  </div>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/lodepng.cpp</li>
+</ul>
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+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>children</b> (defined in <a class="el" href="struct_color_tree.html">ColorTree</a>)</td><td class="entry"><a class="el" href="struct_color_tree.html">ColorTree</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>index</b> (defined in <a class="el" href="struct_color_tree.html">ColorTree</a>)</td><td class="entry"><a class="el" href="struct_color_tree.html">ColorTree</a></td><td class="entry"></td></tr>
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+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_color_tree-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">ColorTree Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a46a3b1d9239f5fd467ec97cd067b9a96"><td class="memItemLeft" align="right" valign="top"><a id="a46a3b1d9239f5fd467ec97cd067b9a96"></a>
+<a class="el" href="struct_color_tree.html">ColorTree</a> *&#160;</td><td class="memItemRight" valign="bottom"><b>children</b> [16]</td></tr>
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+<tr class="memitem:ab3836a4a5981a7cf4ef553d25d9b0361"><td class="memItemLeft" align="right" valign="top"><a id="ab3836a4a5981a7cf4ef553d25d9b0361"></a>
+int&#160;</td><td class="memItemRight" valign="bottom"><b>index</b></td></tr>
+<tr class="separator:ab3836a4a5981a7cf4ef553d25d9b0361"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/lodepng.cpp</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  <div class="headertitle">
+<div class="title">EXACT_RESULT Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
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+<p>This is the complete list of members for <a class="el" href="struct_e_x_a_c_t___r_e_s_u_l_t.html">EXACT_RESULT</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>file_contents</b> (defined in <a class="el" href="struct_e_x_a_c_t___r_e_s_u_l_t.html">EXACT_RESULT</a>)</td><td class="entry"><a class="el" href="struct_e_x_a_c_t___r_e_s_u_l_t.html">EXACT_RESULT</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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diff --git a/docs/html/struct_e_x_a_c_t___r_e_s_u_l_t.html b/docs/html/struct_e_x_a_c_t___r_e_s_u_l_t.html
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+<html xmlns="http://www.w3.org/1999/xhtml">
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: EXACT_RESULT Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
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+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_e_x_a_c_t___r_e_s_u_l_t-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">EXACT_RESULT Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
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+<tr class="memitem:ab4d3de460084674e520889dd1b85ab34"><td class="memItemLeft" align="right" valign="top"><a id="ab4d3de460084674e520889dd1b85ab34"></a>
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+<tr class="separator:ab4d3de460084674e520889dd1b85ab34"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>server/exact_validation_policy.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">Hash Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_hash.html">Hash</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>chain</b> (defined in <a class="el" href="struct_hash.html">Hash</a>)</td><td class="entry"><a class="el" href="struct_hash.html">Hash</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>head</b> (defined in <a class="el" href="struct_hash.html">Hash</a>)</td><td class="entry"><a class="el" href="struct_hash.html">Hash</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>val</b> (defined in <a class="el" href="struct_hash.html">Hash</a>)</td><td class="entry"><a class="el" href="struct_hash.html">Hash</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>zeros</b> (defined in <a class="el" href="struct_hash.html">Hash</a>)</td><td class="entry"><a class="el" href="struct_hash.html">Hash</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Hash Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
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+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_hash-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">Hash Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a0977cf12b1d8e6bbc784b5e0877926f5"><td class="memItemLeft" align="right" valign="top"><a id="a0977cf12b1d8e6bbc784b5e0877926f5"></a>
+int *&#160;</td><td class="memItemRight" valign="bottom"><b>head</b></td></tr>
+<tr class="separator:a0977cf12b1d8e6bbc784b5e0877926f5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+int *&#160;</td><td class="memItemRight" valign="bottom"><b>val</b></td></tr>
+<tr class="separator:a66918968854722efdf7ab5f8ac2c6c1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+unsigned short *&#160;</td><td class="memItemRight" valign="bottom"><b>chain</b></td></tr>
+<tr class="separator:abf6ad3db2f652a19cc4ff0792e477899"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7247caa3e23eaba8f0d199ec5010c931"><td class="memItemLeft" align="right" valign="top"><a id="a7247caa3e23eaba8f0d199ec5010c931"></a>
+unsigned short *&#160;</td><td class="memItemRight" valign="bottom"><b>zeros</b></td></tr>
+<tr class="separator:a7247caa3e23eaba8f0d199ec5010c931"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/lodepng.cpp</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<head>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/lodepng.cpp</li>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<div class="title">LodePNGColorMode Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
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+<p>This is the complete list of members for <a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>, including all inherited members.</p>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>colortype</b> (defined in <a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a></td><td class="entry"></td></tr>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>key_defined</b> (defined in <a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a></td><td class="entry"></td></tr>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>key_r</b> (defined in <a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>palette</b> (defined in <a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>palettesize</b> (defined in <a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_color_mode.html">LodePNGColorMode</a></td><td class="entry"></td></tr>
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+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_lode_p_n_g_color_mode-members.html">List of all members</a>  </div>
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+<tr class="separator:a93a269405fee0d1c5045a1a671ed1de8"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/<a class="el" href="lodepng_8h_source.html">lodepng.h</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">LodePNGCompressSettings Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>btype</b> (defined in <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>custom_context</b> (defined in <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>custom_deflate</b> (defined in <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>custom_zlib</b> (defined in <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>lazymatching</b> (defined in <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>minmatch</b> (defined in <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>nicematch</b> (defined in <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>use_lz77</b> (defined in <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>windowsize</b> (defined in <a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_lode_p_n_g_compress_settings-members.html">List of all members</a>  </div>
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+<div class="title">LodePNGCompressSettings Struct Reference</div>  </div>
+</div><!--header-->
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/<a class="el" href="lodepng_8h_source.html">lodepng.h</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<head>
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+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
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+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<div class="header">
+  <div class="headertitle">
+<div class="title">LodePNGDecoderSettings Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>color_convert</b> (defined in <a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>fix_png</b> (defined in <a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ignore_crc</b> (defined in <a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>read_text_chunks</b> (defined in <a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>remember_unknown_chunks</b> (defined in <a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>zlibsettings</b> (defined in <a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decoder_settings.html">LodePNGDecoderSettings</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<script type="text/javascript" src="jquery.js"></script>
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+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_lode_p_n_g_decoder_settings-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">LodePNGDecoderSettings Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
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+unsigned&#160;</td><td class="memItemRight" valign="bottom"><b>color_convert</b></td></tr>
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+<tr class="separator:a8775e4fc539dc457916720f52b442f27"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/<a class="el" href="lodepng_8h_source.html">lodepng.h</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <div class="headertitle">
+<div class="title">LodePNGDecompressSettings Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>custom_context</b> (defined in <a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>custom_inflate</b> (defined in <a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>custom_zlib</b> (defined in <a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>ignore_adler32</b> (defined in <a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: LodePNGDecompressSettings Struct Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_lode_p_n_g_decompress_settings-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">LodePNGDecompressSettings Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:afab4b919650b51b4d2f175a60ed6c580"><td class="memItemLeft" align="right" valign="top"><a id="afab4b919650b51b4d2f175a60ed6c580"></a>
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+unsigned(*&#160;</td><td class="memItemRight" valign="bottom"><b>custom_zlib</b> )(unsigned char **, size_t *, const unsigned char *, size_t, const <a class="el" href="struct_lode_p_n_g_decompress_settings.html">LodePNGDecompressSettings</a> *)</td></tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/<a class="el" href="lodepng_8h_source.html">lodepng.h</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">LodePNGEncoderSettings Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>add_id</b> (defined in <a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>auto_convert</b> (defined in <a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>filter_palette_zero</b> (defined in <a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>filter_strategy</b> (defined in <a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>force_palette</b> (defined in <a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>predefined_filters</b> (defined in <a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>text_compression</b> (defined in <a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>zlibsettings</b> (defined in <a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_encoder_settings.html">LodePNGEncoderSettings</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<script type="text/javascript" src="jquery.js"></script>
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+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_lode_p_n_g_encoder_settings-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">LodePNGEncoderSettings Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a2c5928b4172c75e27de467870f2ff946"><td class="memItemLeft" align="right" valign="top"><a id="a2c5928b4172c75e27de467870f2ff946"></a>
+<a class="el" href="struct_lode_p_n_g_compress_settings.html">LodePNGCompressSettings</a>&#160;</td><td class="memItemRight" valign="bottom"><b>zlibsettings</b></td></tr>
+<tr class="separator:a2c5928b4172c75e27de467870f2ff946"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4cad5feafb33c208706886bedb93d3d4"><td class="memItemLeft" align="right" valign="top"><a id="a4cad5feafb33c208706886bedb93d3d4"></a>
+LodePNGAutoConvert&#160;</td><td class="memItemRight" valign="bottom"><b>auto_convert</b></td></tr>
+<tr class="separator:a4cad5feafb33c208706886bedb93d3d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0d82e8f2fabcb6cebbc54b80922945f1"><td class="memItemLeft" align="right" valign="top"><a id="a0d82e8f2fabcb6cebbc54b80922945f1"></a>
+unsigned&#160;</td><td class="memItemRight" valign="bottom"><b>filter_palette_zero</b></td></tr>
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+LodePNGFilterStrategy&#160;</td><td class="memItemRight" valign="bottom"><b>filter_strategy</b></td></tr>
+<tr class="separator:a5e18e4eb941763a2e3e6c65ee9f0729c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4446f87b5283f25664802a1be037e76e"><td class="memItemLeft" align="right" valign="top"><a id="a4446f87b5283f25664802a1be037e76e"></a>
+const unsigned char *&#160;</td><td class="memItemRight" valign="bottom"><b>predefined_filters</b></td></tr>
+<tr class="separator:a4446f87b5283f25664802a1be037e76e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a04dc9622ccd1d7c74c56291409aa512a"><td class="memItemLeft" align="right" valign="top"><a id="a04dc9622ccd1d7c74c56291409aa512a"></a>
+unsigned&#160;</td><td class="memItemRight" valign="bottom"><b>force_palette</b></td></tr>
+<tr class="separator:a04dc9622ccd1d7c74c56291409aa512a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+unsigned&#160;</td><td class="memItemRight" valign="bottom"><b>add_id</b></td></tr>
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+<tr class="memitem:a6ffdcb8e85a65ea208fe027be072d710"><td class="memItemLeft" align="right" valign="top"><a id="a6ffdcb8e85a65ea208fe027be072d710"></a>
+unsigned&#160;</td><td class="memItemRight" valign="bottom"><b>text_compression</b></td></tr>
+<tr class="separator:a6ffdcb8e85a65ea208fe027be072d710"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/<a class="el" href="lodepng_8h_source.html">lodepng.h</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
+$(function() {
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+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">LodePNGInfo Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>background_b</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>background_defined</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>background_g</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>background_r</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>color</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>compression_method</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>filter_method</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>interlace_method</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>itext_keys</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>itext_langtags</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>itext_num</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>itext_strings</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>itext_transkeys</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>phys_defined</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>phys_unit</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>phys_x</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>phys_y</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>text_keys</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>text_num</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>text_strings</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>time</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>time_defined</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>unknown_chunks_data</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>unknown_chunks_size</b> (defined in <a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_info.html">LodePNGInfo</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<script type="text/javascript" src="jquery.js"></script>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
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+<p>This is the complete list of members for <a class="el" href="struct_lode_p_n_g_state.html">LodePNGState</a>, including all inherited members.</p>
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>info_png</b> (defined in <a class="el" href="struct_lode_p_n_g_state.html">LodePNGState</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_state.html">LodePNGState</a></td><td class="entry"></td></tr>
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+<tr class="separator:a1a00a050da588cf3c2b7a6252bebb0cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/<a class="el" href="lodepng_8h_source.html">lodepng.h</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
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+<script type="text/javascript" src="jquery.js"></script>
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+  <div class="headertitle">
+<div class="title">LodePNGTime Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>day</b> (defined in <a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>hour</b> (defined in <a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>minute</b> (defined in <a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a></td><td class="entry"></td></tr>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>second</b> (defined in <a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>year</b> (defined in <a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a>)</td><td class="entry"><a class="el" href="struct_lode_p_n_g_time.html">LodePNGTime</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: LodePNGTime Struct Reference</title>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_lode_p_n_g_time-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">LodePNGTime Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/<a class="el" href="lodepng_8h_source.html">lodepng.h</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <div class="headertitle">
+<div class="title">ResultSet Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="struct_result_set.html">ResultSet</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>job</b> (defined in <a class="el" href="struct_result_set.html">ResultSet</a>)</td><td class="entry"><a class="el" href="struct_result_set.html">ResultSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>milliseconds</b> (defined in <a class="el" href="struct_result_set.html">ResultSet</a>)</td><td class="entry"><a class="el" href="struct_result_set.html">ResultSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>test_mae</b> (defined in <a class="el" href="struct_result_set.html">ResultSet</a>)</td><td class="entry"><a class="el" href="struct_result_set.html">ResultSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>test_mse</b> (defined in <a class="el" href="struct_result_set.html">ResultSet</a>)</td><td class="entry"><a class="el" href="struct_result_set.html">ResultSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>training_mae</b> (defined in <a class="el" href="struct_result_set.html">ResultSet</a>)</td><td class="entry"><a class="el" href="struct_result_set.html">ResultSet</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>training_mse</b> (defined in <a class="el" href="struct_result_set.html">ResultSet</a>)</td><td class="entry"><a class="el" href="struct_result_set.html">ResultSet</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+</table>
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+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="struct_result_set-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">ResultSet Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
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+<tr class="separator:a1ec173e479cab71996940492757aece3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>mpi/rnn_kfold_sweep.cxx</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="title">cs_less_than_avg Member List</div>  </div>
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+<p>This is the complete list of members for <a class="el" href="structcs__less__than__avg.html">cs_less_than_avg</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(const ConsolidatedStatistics *s1, const ConsolidatedStatistics *s2) (defined in <a class="el" href="structcs__less__than__avg.html">cs_less_than_avg</a>)</td><td class="entry"><a class="el" href="structcs__less__than__avg.html">cs_less_than_avg</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
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+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: cs_less_than_avg Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
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+<table cellspacing="0" cellpadding="0">
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structcs__less__than__avg-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">cs_less_than_avg Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+  <div class="headertitle">
+<div class="title">cs_less_than_max Member List</div>  </div>
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+
+<p>This is the complete list of members for <a class="el" href="structcs__less__than__max.html">cs_less_than_max</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(const ConsolidatedStatistics *s1, const ConsolidatedStatistics *s2) (defined in <a class="el" href="structcs__less__than__max.html">cs_less_than_max</a>)</td><td class="entry"><a class="el" href="structcs__less__than__max.html">cs_less_than_max</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structcs__less__than__max-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">cs_less_than_max Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="memitem:adc8849f06b81eecec7ac74bbe334c24a"><td class="memItemLeft" align="right" valign="top"><a id="adc8849f06b81eecec7ac74bbe334c24a"></a>
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+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <div class="headertitle">
+<div class="title">cs_less_than_min Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structcs__less__than__min.html">cs_less_than_min</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(const ConsolidatedStatistics *s1, const ConsolidatedStatistics *s2) (defined in <a class="el" href="structcs__less__than__min.html">cs_less_than_min</a>)</td><td class="entry"><a class="el" href="structcs__less__than__min.html">cs_less_than_min</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+</body>
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diff --git a/docs/html/structcs__less__than__min.html b/docs/html/structcs__less__than__min.html
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: cs_less_than_min Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structcs__less__than__min-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">cs_less_than_min Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="memitem:ab532df35c758abfa79398c3fe71af373"><td class="memItemLeft" align="right" valign="top"><a id="ab532df35c758abfa79398c3fe71af373"></a>
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+<tr class="separator:ab532df35c758abfa79398c3fe71af373"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">less_than_avg Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structless__than__avg.html">less_than_avg</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(const RunStatistics *s1, const RunStatistics *s2) (defined in <a class="el" href="structless__than__avg.html">less_than_avg</a>)</td><td class="entry"><a class="el" href="structless__than__avg.html">less_than_avg</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+<script type="text/javascript" src="jquery.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+ </tbody>
+</table>
+</div>
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+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+<iframe src="javascript:void(0)" frameborder="0" 
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+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structless__than__avg-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">less_than_avg Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:acc7aee282e5828e0a9dbd421936cef43"><td class="memItemLeft" align="right" valign="top"><a id="acc7aee282e5828e0a9dbd421936cef43"></a>
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+<tr class="separator:acc7aee282e5828e0a9dbd421936cef43"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<table cellspacing="0" cellpadding="0">
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+  <td id="projectalign" style="padding-left: 0.5em;">
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+</table>
+</div>
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
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+<iframe src="javascript:void(0)" frameborder="0" 
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+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">less_than_dfm_avg Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structless__than__dfm__avg.html">less_than_dfm_avg</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(const RunStatistics *s1, const RunStatistics *s2) (defined in <a class="el" href="structless__than__dfm__avg.html">less_than_dfm_avg</a>)</td><td class="entry"><a class="el" href="structless__than__dfm__avg.html">less_than_dfm_avg</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+<script type="text/javascript" src="jquery.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+/* @license-end */
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structless__than__dfm__avg-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">less_than_dfm_avg Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>operator()</b> (const <a class="el" href="class_run_statistics.html">RunStatistics</a> *s1, const <a class="el" href="class_run_statistics.html">RunStatistics</a> *s2)</td></tr>
+<tr class="separator:a170ef354337c2bc1cdd9bec4e49fe7d9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">less_than_dfm_max Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structless__than__dfm__max.html">less_than_dfm_max</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(const RunStatistics *s1, const RunStatistics *s2) (defined in <a class="el" href="structless__than__dfm__max.html">less_than_dfm_max</a>)</td><td class="entry"><a class="el" href="structless__than__dfm__max.html">less_than_dfm_max</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: less_than_dfm_max Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<table cellspacing="0" cellpadding="0">
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structless__than__dfm__max-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">less_than_dfm_max Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+bool&#160;</td><td class="memItemRight" valign="bottom"><b>operator()</b> (const <a class="el" href="class_run_statistics.html">RunStatistics</a> *s1, const <a class="el" href="class_run_statistics.html">RunStatistics</a> *s2)</td></tr>
+<tr class="separator:a438d0fcca06b9a3e6b506d214dcf32e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<table cellspacing="0" cellpadding="0">
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+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+     onmouseover="return searchBox.OnSearchSelectShow()"
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+</div>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">less_than_dfm_min Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structless__than__dfm__min.html">less_than_dfm_min</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(const RunStatistics *s1, const RunStatistics *s2) (defined in <a class="el" href="structless__than__dfm__min.html">less_than_dfm_min</a>)</td><td class="entry"><a class="el" href="structless__than__dfm__min.html">less_than_dfm_min</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: less_than_dfm_min Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license-end */
+</script>
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+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structless__than__dfm__min-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">less_than_dfm_min Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a38f0bd46d26fd24d5897a7fd9f01ca09"><td class="memItemLeft" align="right" valign="top"><a id="a38f0bd46d26fd24d5897a7fd9f01ca09"></a>
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+<tr class="separator:a38f0bd46d26fd24d5897a7fd9f01ca09"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
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+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="headertitle">
+<div class="title">less_than_max Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structless__than__max.html">less_than_max</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(const RunStatistics *s1, const RunStatistics *s2) (defined in <a class="el" href="structless__than__max.html">less_than_max</a>)</td><td class="entry"><a class="el" href="structless__than__max.html">less_than_max</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+  <div class="headertitle">
+<div class="title">less_than_max Struct Reference</div>  </div>
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+<tr class="separator:ab56ea10ec2c21ec48a748debd1d08ab9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+</ul>
+</div><!-- contents -->
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+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+  <div class="headertitle">
+<div class="title">less_than_min Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
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+<p>This is the complete list of members for <a class="el" href="structless__than__min.html">less_than_min</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(const RunStatistics *s1, const RunStatistics *s2) (defined in <a class="el" href="structless__than__min.html">less_than_min</a>)</td><td class="entry"><a class="el" href="structless__than__min.html">less_than_min</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: less_than_min Struct Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
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+<div class="header">
+  <div class="summary">
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+<a href="structless__than__min-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">less_than_min Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="separator:a738821687cd1c61110b74d48df62b782"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>mpi/<a class="el" href="run__statistics_8hxx_source.html">run_statistics.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<div class="header">
+  <div class="headertitle">
+<div class="title">sort_CNN_Edges_by_depth Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structsort___c_n_n___edges__by__depth.html">sort_CNN_Edges_by_depth</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(CNN_Edge *n1, CNN_Edge *n2) (defined in <a class="el" href="structsort___c_n_n___edges__by__depth.html">sort_CNN_Edges_by_depth</a>)</td><td class="entry"><a class="el" href="structsort___c_n_n___edges__by__depth.html">sort_CNN_Edges_by_depth</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_CNN_Edges_by_depth Struct Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___c_n_n___edges__by__depth-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_CNN_Edges_by_depth Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a3ed9a9b0a4bc6d45056789d989996c14"><td class="memItemLeft" align="right" valign="top"><a id="a3ed9a9b0a4bc6d45056789d989996c14"></a>
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+<tr class="separator:a3ed9a9b0a4bc6d45056789d989996c14"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>cnn/<a class="el" href="cnn__edge_8hxx_source.html">cnn_edge.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(CNN_Edge *n1, CNN_Edge *n2) (defined in <a class="el" href="structsort___c_n_n___edges__by__innovation.html">sort_CNN_Edges_by_innovation</a>)</td><td class="entry"><a class="el" href="structsort___c_n_n___edges__by__innovation.html">sort_CNN_Edges_by_innovation</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_CNN_Edges_by_innovation Struct Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___c_n_n___edges__by__innovation-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_CNN_Edges_by_innovation Struct Reference</div>  </div>
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+</ul>
+</div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<p>This is the complete list of members for <a class="el" href="structsort___c_n_n___edges__by__output__depth.html">sort_CNN_Edges_by_output_depth</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(CNN_Edge *n1, CNN_Edge *n2) (defined in <a class="el" href="structsort___c_n_n___edges__by__output__depth.html">sort_CNN_Edges_by_output_depth</a>)</td><td class="entry"><a class="el" href="structsort___c_n_n___edges__by__output__depth.html">sort_CNN_Edges_by_output_depth</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
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+<!-- Generated by Doxygen 1.8.17 -->
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___c_n_n___edges__by__output__depth-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_CNN_Edges_by_output_depth Struct Reference</div>  </div>
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+<div class="contents">
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+</ul>
+</div><!-- contents -->
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+</a> 1.8.17
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
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+  <div class="headertitle">
+<div class="title">sort_CNN_Nodes_by_depth Struct Reference</div>  </div>
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+<li>cnn/<a class="el" href="cnn__node_8hxx_source.html">cnn_node.hxx</a></li>
+</ul>
+</div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<div class="title">sort_RNN_Edges_by_depth Member List</div>  </div>
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+<p>This is the complete list of members for <a class="el" href="structsort___r_n_n___edges__by__depth.html">sort_RNN_Edges_by_depth</a>, including all inherited members.</p>
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+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(RNN_Edge *n1, RNN_Edge *n2) (defined in <a class="el" href="structsort___r_n_n___edges__by__depth.html">sort_RNN_Edges_by_depth</a>)</td><td class="entry"><a class="el" href="structsort___r_n_n___edges__by__depth.html">sort_RNN_Edges_by_depth</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_RNN_Edges_by_depth Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+<script type="text/javascript" src="menudata.js"></script>
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___r_n_n___edges__by__depth-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_RNN_Edges_by_depth Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
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+<hr/>The documentation for this struct was generated from the following file:<ul>
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+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<script type="text/javascript">
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+  <div class="headertitle">
+<div class="title">sort_RNN_Edges_by_innovation Member List</div>  </div>
+</div><!--header-->
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+<p>This is the complete list of members for <a class="el" href="structsort___r_n_n___edges__by__innovation.html">sort_RNN_Edges_by_innovation</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(RNN_Edge *n1, RNN_Edge *n2) (defined in <a class="el" href="structsort___r_n_n___edges__by__innovation.html">sort_RNN_Edges_by_innovation</a>)</td><td class="entry"><a class="el" href="structsort___r_n_n___edges__by__innovation.html">sort_RNN_Edges_by_innovation</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
+</small></address>
+</body>
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+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
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+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
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+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
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+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___r_n_n___edges__by__innovation-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_RNN_Edges_by_innovation Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="separator:a6d1cfc2ba6163fce1cad300f1e6b3f86"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>rnn/<a class="el" href="rnn__edge_8hxx_source.html">rnn_edge.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <div class="headertitle">
+<div class="title">sort_RNN_Edges_by_output_depth Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structsort___r_n_n___edges__by__output__depth.html">sort_RNN_Edges_by_output_depth</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(RNN_Edge *n1, RNN_Edge *n2) (defined in <a class="el" href="structsort___r_n_n___edges__by__output__depth.html">sort_RNN_Edges_by_output_depth</a>)</td><td class="entry"><a class="el" href="structsort___r_n_n___edges__by__output__depth.html">sort_RNN_Edges_by_output_depth</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.17"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_RNN_Edges_by_output_depth Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<table cellspacing="0" cellpadding="0">
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+<!-- Generated by Doxygen 1.8.17 -->
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+        name="MSearchResults" id="MSearchResults">
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___r_n_n___edges__by__output__depth-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_RNN_Edges_by_output_depth Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="separator:a9c3ca0231748a742c637cb9facab927b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>rnn/<a class="el" href="rnn__edge_8hxx_source.html">rnn_edge.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<script type="text/javascript" src="jquery.js"></script>
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+  <div class="headertitle">
+<div class="title">sort_RNN_Nodes_by_depth Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structsort___r_n_n___nodes__by__depth.html">sort_RNN_Nodes_by_depth</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(RNN_Node_Interface *n1, RNN_Node_Interface *n2) (defined in <a class="el" href="structsort___r_n_n___nodes__by__depth.html">sort_RNN_Nodes_by_depth</a>)</td><td class="entry"><a class="el" href="structsort___r_n_n___nodes__by__depth.html">sort_RNN_Nodes_by_depth</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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diff --git a/docs/html/structsort___r_n_n___nodes__by__depth.html b/docs/html/structsort___r_n_n___nodes__by__depth.html
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_RNN_Nodes_by_depth Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
+   </div>
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+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
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+<!-- window showing the filter options -->
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+     onmouseover="return searchBox.OnSearchSelectShow()"
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+<!-- iframe showing the search results (closed by default) -->
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+        name="MSearchResults" id="MSearchResults">
+</iframe>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___r_n_n___nodes__by__depth-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_RNN_Nodes_by_depth Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="separator:a87ccc3e6ade2336119c29c318db9cc12"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>rnn/<a class="el" href="rnn__node__interface_8hxx_source.html">rnn_node_interface.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<script type="text/javascript" src="jquery.js"></script>
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+  <div class="headertitle">
+<div class="title">sort_RNN_Nodes_by_innovation Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structsort___r_n_n___nodes__by__innovation.html">sort_RNN_Nodes_by_innovation</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(RNN_Node_Interface *n1, RNN_Node_Interface *n2) (defined in <a class="el" href="structsort___r_n_n___nodes__by__innovation.html">sort_RNN_Nodes_by_innovation</a>)</td><td class="entry"><a class="el" href="structsort___r_n_n___nodes__by__innovation.html">sort_RNN_Nodes_by_innovation</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
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+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+/* @license-end */</script>
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+<!-- window showing the filter options -->
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+     onmouseover="return searchBox.OnSearchSelectShow()"
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___r_n_n___nodes__by__innovation-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_RNN_Nodes_by_innovation Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
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+<tr class="separator:a51e5c470e4897ea95fba81b8ee8daf4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>rnn/<a class="el" href="rnn__node__interface_8hxx_source.html">rnn_node_interface.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<div class="title">sort_RNN_Recurrent_Edges_by_depth Member List</div>  </div>
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+<p>This is the complete list of members for <a class="el" href="structsort___r_n_n___recurrent___edges__by__depth.html">sort_RNN_Recurrent_Edges_by_depth</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(RNN_Recurrent_Edge *n1, RNN_Recurrent_Edge *n2) (defined in <a class="el" href="structsort___r_n_n___recurrent___edges__by__depth.html">sort_RNN_Recurrent_Edges_by_depth</a>)</td><td class="entry"><a class="el" href="structsort___r_n_n___recurrent___edges__by__depth.html">sort_RNN_Recurrent_Edges_by_depth</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_RNN_Recurrent_Edges_by_depth Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+</table>
+</div>
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+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___r_n_n___recurrent___edges__by__depth-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_RNN_Recurrent_Edges_by_depth Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>rnn/<a class="el" href="rnn__recurrent__edge_8hxx_source.html">rnn_recurrent_edge.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+ </tbody>
+</table>
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+</div><!--header-->
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+<p>This is the complete list of members for <a class="el" href="structsort___r_n_n___recurrent___edges__by__innovation.html">sort_RNN_Recurrent_Edges_by_innovation</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(RNN_Recurrent_Edge *n1, RNN_Recurrent_Edge *n2) (defined in <a class="el" href="structsort___r_n_n___recurrent___edges__by__innovation.html">sort_RNN_Recurrent_Edges_by_innovation</a>)</td><td class="entry"><a class="el" href="structsort___r_n_n___recurrent___edges__by__innovation.html">sort_RNN_Recurrent_Edges_by_innovation</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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diff --git a/docs/html/structsort___r_n_n___recurrent___edges__by__innovation.html b/docs/html/structsort___r_n_n___recurrent___edges__by__innovation.html
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_RNN_Recurrent_Edges_by_innovation Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license-end */
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+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
+
+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___r_n_n___recurrent___edges__by__innovation-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_RNN_Recurrent_Edges_by_innovation Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="separator:a4e6f3310647974b9f69dc692b175b3c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>rnn/<a class="el" href="rnn__recurrent__edge_8hxx_source.html">rnn_recurrent_edge.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
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+  <div class="headertitle">
+<div class="title">sort_RNN_Recurrent_Edges_by_output_depth Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structsort___r_n_n___recurrent___edges__by__output__depth.html">sort_RNN_Recurrent_Edges_by_output_depth</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(RNN_Recurrent_Edge *n1, RNN_Recurrent_Edge *n2) (defined in <a class="el" href="structsort___r_n_n___recurrent___edges__by__output__depth.html">sort_RNN_Recurrent_Edges_by_output_depth</a>)</td><td class="entry"><a class="el" href="structsort___r_n_n___recurrent___edges__by__output__depth.html">sort_RNN_Recurrent_Edges_by_output_depth</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
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diff --git a/docs/html/structsort___r_n_n___recurrent___edges__by__output__depth.html b/docs/html/structsort___r_n_n___recurrent___edges__by__output__depth.html
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_RNN_Recurrent_Edges_by_output_depth Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort___r_n_n___recurrent___edges__by__output__depth-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_RNN_Recurrent_Edges_by_output_depth Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="separator:aa72fc5151555dbf7ea233e94dc9b05dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>rnn/<a class="el" href="rnn__recurrent__edge_8hxx_source.html">rnn_recurrent_edge.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
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+<script type="text/javascript" src="jquery.js"></script>
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+  <div class="headertitle">
+<div class="title">sort_genomes_by_fitness Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structsort__genomes__by__fitness.html">sort_genomes_by_fitness</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(RNN_Genome *g1, RNN_Genome *g2) (defined in <a class="el" href="structsort__genomes__by__fitness.html">sort_genomes_by_fitness</a>)</td><td class="entry"><a class="el" href="structsort__genomes__by__fitness.html">sort_genomes_by_fitness</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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diff --git a/docs/html/structsort__genomes__by__fitness.html b/docs/html/structsort__genomes__by__fitness.html
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_genomes_by_fitness Struct Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr style="height: 56px;">
+  <td id="projectalign" style="padding-left: 0.5em;">
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+   </div>
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+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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+  $(document).ready(function() { init_search(); });
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+     onmouseover="return searchBox.OnSearchSelectShow()"
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+        name="MSearchResults" id="MSearchResults">
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+</div>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort__genomes__by__fitness-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_genomes_by_fitness Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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+<tr class="separator:a4938540d4d30d58f87248c4febbaaf18"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>rnn/<a class="el" href="rnn__genome_8hxx_source.html">rnn_genome.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+</table>
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+  <div class="headertitle">
+<div class="title">sort_genomes_by_predictions Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structsort__genomes__by__predictions.html">sort_genomes_by_predictions</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(CNN_Genome *g1, CNN_Genome *g2) (defined in <a class="el" href="structsort__genomes__by__predictions.html">sort_genomes_by_predictions</a>)</td><td class="entry"><a class="el" href="structsort__genomes__by__predictions.html">sort_genomes_by_predictions</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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diff --git a/docs/html/structsort__genomes__by__predictions.html b/docs/html/structsort__genomes__by__predictions.html
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+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_genomes_by_predictions Struct Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
+   <div id="projectname">EXONA: Evolutionary eXploration of Neural Architectures
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+});
+/* @license-end */</script>
+<div id="main-nav"></div>
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
+</div>
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+</div><!-- top -->
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structsort__genomes__by__predictions-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">sort_genomes_by_predictions Struct Reference</div>  </div>
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+<div class="contents">
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+<tr class="separator:abfe8f7bd410d2e866d04cef265e6d171"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>cnn/<a class="el" href="cnn__genome_8hxx_source.html">cnn_genome.hxx</a></li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<div class="title">sort_genomes_by_validation_error Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structsort__genomes__by__validation__error.html">sort_genomes_by_validation_error</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>operator()</b>(CNN_Genome *g1, CNN_Genome *g2) (defined in <a class="el" href="structsort__genomes__by__validation__error.html">sort_genomes_by_validation_error</a>)</td><td class="entry"><a class="el" href="structsort__genomes__by__validation__error.html">sort_genomes_by_validation_error</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+<!-- start footer part -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: sort_genomes_by_validation_error Struct Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+  <td id="projectalign" style="padding-left: 0.5em;">
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+<!-- Generated by Doxygen 1.8.17 -->
+<script type="text/javascript">
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
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+  <div class="headertitle">
+<div class="title">sort_genomes_by_validation_error Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
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+</ul>
+</div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<script type="text/javascript" src="jquery.js"></script>
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+  <div class="headertitle">
+<div class="title">ucvector Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structucvector.html">ucvector</a>, including all inherited members.</p>
+<table class="directory">
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>allocsize</b> (defined in <a class="el" href="structucvector.html">ucvector</a>)</td><td class="entry"><a class="el" href="structucvector.html">ucvector</a></td><td class="entry"></td></tr>
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+</table></div><!-- contents -->
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+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+</a> 1.8.17
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: ucvector Struct Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+ </tbody>
+</table>
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+<!-- end header part -->
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+</div><!-- top -->
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+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structucvector-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">ucvector Struct Reference</div>  </div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
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+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/lodepng.cpp</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>EXONA: Evolutionary eXploration of Neural Architectures: Member List</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+</table>
+</div>
+<!-- end header part -->
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+  <div class="headertitle">
+<div class="title">uivector Member List</div>  </div>
+</div><!--header-->
+<div class="contents">
+
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+  <tr bgcolor="#f0f0f0"><td class="entry"><b>data</b> (defined in <a class="el" href="structuivector.html">uivector</a>)</td><td class="entry"><a class="el" href="structuivector.html">uivector</a></td><td class="entry"></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>size</b> (defined in <a class="el" href="structuivector.html">uivector</a>)</td><td class="entry"><a class="el" href="structuivector.html">uivector</a></td><td class="entry"></td></tr>
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+</a> 1.8.17
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structuivector-members.html">List of all members</a>  </div>
+  <div class="headertitle">
+<div class="title">uivector Struct Reference</div>  </div>
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+<div class="contents">
+<table class="memberdecls">
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+<tr class="memitem:a427d761df4bb4f0f19b4a973fc224c78"><td class="memItemLeft" align="right" valign="top"><a id="a427d761df4bb4f0f19b4a973fc224c78"></a>
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+size_t&#160;</td><td class="memItemRight" valign="bottom"><b>allocsize</b></td></tr>
+<tr class="separator:aac0395a9ad397ae7a28219561ab49ffa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>image_tools/lodepng.cpp</li>
+</ul>
+</div><!-- contents -->
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
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+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_time_series_sets_html_a45b61a73ae84cdafce66a10dd9930534"><div class="ttname"><a href="class_time_series_sets.html#a45b61a73ae84cdafce66a10dd9930534">TimeSeriesSets::export_test_series</a></div><div class="ttdeci">void export_test_series(int time_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</div><div class="ttdoc">This exports the time series marked as test series by the test_indexes vector.</div><div class="ttdef"><b>Definition:</b> time_series.cxx:1092</div></div>
+<div class="ttc" id="aclass_time_series_set_html"><div class="ttname"><a href="class_time_series_set.html">TimeSeriesSet</a></div><div class="ttdef"><b>Definition:</b> time_series.hxx:63</div></div>
+<div class="ttc" id="aclass_time_series_sets_html_a2ee946c4092fa81d3dc2cbf4c65b3388"><div class="ttname"><a href="class_time_series_sets.html#a2ee946c4092fa81d3dc2cbf4c65b3388">TimeSeriesSets::export_series_by_name</a></div><div class="ttdeci">void export_series_by_name(string field_name, vector&lt; vector&lt; double &gt; &gt; &amp;exported_series)</div><div class="ttdoc">This exports from all the loaded time series a particular column.</div><div class="ttdef"><b>Definition:</b> time_series.cxx:1105</div></div>
+<div class="ttc" id="aclass_time_series_html"><div class="ttname"><a href="class_time_series.html">TimeSeries</a></div><div class="ttdef"><b>Definition:</b> time_series.hxx:16</div></div>
+<div class="ttc" id="abasic_ostream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a></div></div>
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+<div class="ttc" id="amap_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/map.html">std::map</a></div></div>
+<div class="ttc" id="aclass_time_series_sets_html"><div class="ttname"><a href="class_time_series_sets.html">TimeSeriesSets</a></div><div class="ttdef"><b>Definition:</b> time_series.hxx:114</div></div>
+<div class="ttc" id="aclass_time_series_sets_html_af7b9f9319c330cb6af8475ce1c2aa545"><div class="ttname"><a href="class_time_series_sets.html#af7b9f9319c330cb6af8475ce1c2aa545">TimeSeriesSets::export_training_series</a></div><div class="ttdeci">void export_training_series(int time_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</div><div class="ttdoc">This exports the time series marked as training series by the training_indexes vector.</div><div class="ttdef"><b>Definition:</b> time_series.cxx:1080</div></div>
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_TRACKER_HXX</span></div>
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_UGRNN_NODE_HXX</span></div>
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+<div class="ttc" id="aclass_r_n_n___edge_html"><div class="ttname"><a href="class_r_n_n___edge.html">RNN_Edge</a></div><div class="ttdef"><b>Definition:</b> rnn_edge.hxx:6</div></div>
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXACT_VERSION_HXX</span></div>
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: common/weight_initialize.hxx Source File</title>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<div class="title">weight_initialize.hxx</div>  </div>
+</div><!--header-->
+<div class="contents">
+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef WEIGHT_INITIALIZE_HXX</span></div>
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+</a> 1.8.17
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+<title>EXONA: Evolutionary eXploration of Neural Architectures: word_series/word_series.hxx Source File</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+ </tbody>
+</table>
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+<!-- end header part -->
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+<div class="title">word_series.hxx</div>  </div>
+</div><!--header-->
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+<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#ifndef EXAMM_WORD_SERIES_HXX</span></div>
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+<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;        <span class="keyword">static</span> <a class="code" href="class_corpus.html">Corpus</a>* generate_test(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;_test_filenames, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;_input_parameter_names, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> &amp;_output_parameter_names);</div>
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+<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;        <span class="keywordtype">void</span> normalize_min_max(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_mins, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_maxs);</div>
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+<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;        <span class="keywordtype">void</span> normalize_avg_std_dev(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_avgs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_std_devs, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_mins, <span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> &amp;_normalize_maxs);</div>
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+<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160; </div>
+<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;        <span class="keywordtype">void</span> export_sent_series(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;series_indexes, <span class="keywordtype">int</span> word_offset, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;inputs, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;outputs);</div>
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+<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160; </div>
+<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_corpus.html#a1559311071b5de22e15561a39225ec12">export_test_series</a>(<span class="keywordtype">int</span> word_offset, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;inputs, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &gt; &amp;outputs);</div>
+<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160; </div>
+<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;        <span class="keywordtype">void</span> export_series_by_name(<span class="keywordtype">string</span> field_name, <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector</a>&lt; <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;double&gt;</a> &gt; &amp;exported_series);</div>
+<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160; </div>
+<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;        <span class="keywordtype">double</span> denormalize(<span class="keywordtype">string</span> field_name, <span class="keywordtype">double</span> value);</div>
+<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160; </div>
+<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;        <span class="keywordtype">string</span> get_normalize_type() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> get_normalize_mins() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> get_normalize_maxs() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> get_normalize_avgs() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/map.html">map&lt;string,double&gt;</a> get_normalize_std_devs() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160; </div>
+<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> get_input_parameter_names() <span class="keyword">const</span>;</div>
+<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;        <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;string&gt;</a> get_output_parameter_names() <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;        <span class="keywordtype">int</span> get_number_series() <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;        <span class="keywordtype">int</span> get_number_inputs() <span class="keyword">const</span>;</div>
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+<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;        <span class="keywordtype">void</span> set_training_indexes(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;_training_indexes);</div>
+<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160;        <span class="keywordtype">void</span> set_test_indexes(<span class="keyword">const</span> <a class="codeRef" href="http://en.cppreference.com/w/cpp/container/vector.html">vector&lt;int&gt;</a> &amp;_test_indexes);</div>
+<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160; </div>
+<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;        <a class="code" href="class_sentence_series.html">SentenceSeries</a> *get_set(int32_t i);</div>
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+<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160; </div>
+<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;<span class="preprocessor">#endif</span></div>
+</div><!-- fragment --></div><!-- contents -->
+<div class="ttc" id="abasic_string_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/string/basic_string.html">std::string</a></div></div>
+<div class="ttc" id="aclass_corpus_html_a241439045ad1a83d6104b4350961e1b3"><div class="ttname"><a href="class_corpus.html#a241439045ad1a83d6104b4350961e1b3">Corpus::export_training_series</a></div><div class="ttdeci">void export_training_series(int word_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</div><div class="ttdoc">Exports Corpus Dataset to be used for training in RNN genome.</div><div class="ttdef"><b>Definition:</b> word_series.cxx:920</div></div>
+<div class="ttc" id="aclass_word_series_html_a0db2200d32c40a69f28f55457d05afac"><div class="ttname"><a href="class_word_series.html#a0db2200d32c40a69f28f55457d05afac">WordSeries::vocab_size</a></div><div class="ttdeci">int vocab_size</div><div class="ttdoc">Specifies the number of the unique strings in the dataset.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:28</div></div>
+<div class="ttc" id="aclass_corpus_html_a45ee2e625bab4930a20b8448d0e168b0"><div class="ttname"><a href="class_corpus.html#a45ee2e625bab4930a20b8448d0e168b0">Corpus::write_sentence_series_sets</a></div><div class="ttdeci">void write_sentence_series_sets(string base_filename)</div><div class="ttdoc">Generates the csv data file.</div><div class="ttdef"><b>Definition:</b> word_series.cxx:953</div></div>
+<div class="ttc" id="avector_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/vector.html">std::vector</a></div></div>
+<div class="ttc" id="aclass_corpus_html_acc4af3ddc788396aede04a140e15f8b6"><div class="ttname"><a href="class_corpus.html#acc4af3ddc788396aede04a140e15f8b6">Corpus::training_indexes</a></div><div class="ttdeci">vector&lt; int &gt; training_indexes</div><div class="ttdoc">stores the training index of the filenames.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:181</div></div>
+<div class="ttc" id="aclass_sentence_series_html_a12648e58e8101346fb1d0b9008f89084"><div class="ttname"><a href="class_sentence_series.html#a12648e58e8101346fb1d0b9008f89084">SentenceSeries::vocab</a></div><div class="ttdeci">map&lt; string, int &gt; vocab</div><div class="ttdoc">Maps the word string to index of the word series in a particular string.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:111</div></div>
+<div class="ttc" id="aclass_corpus_html_ac7b85b5b0a376016c63b58200aa03e19"><div class="ttname"><a href="class_corpus.html#ac7b85b5b0a376016c63b58200aa03e19">Corpus::output_parameter_names</a></div><div class="ttdeci">vector&lt; string &gt; output_parameter_names</div><div class="ttdoc">stores the input parameter names of the filenames.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:197</div></div>
+<div class="ttc" id="aclass_corpus_html_a1559311071b5de22e15561a39225ec12"><div class="ttname"><a href="class_corpus.html#a1559311071b5de22e15561a39225ec12">Corpus::export_test_series</a></div><div class="ttdeci">void export_test_series(int word_offset, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;inputs, vector&lt; vector&lt; vector&lt; double &gt; &gt; &gt; &amp;outputs)</div><div class="ttdoc">Exports Corpus Dataset to be used for testing in RNN genome.</div><div class="ttdef"><b>Definition:</b> word_series.cxx:932</div></div>
+<div class="ttc" id="aclass_corpus_html_acdc26dc71f4664b914bc6f4ddd08f5c7"><div class="ttname"><a href="class_corpus.html#acdc26dc71f4664b914bc6f4ddd08f5c7">Corpus::filenames</a></div><div class="ttdeci">vector&lt; string &gt; filenames</div><div class="ttdoc">Stores all the filenames including training and testing.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:176</div></div>
+<div class="ttc" id="aclass_word_series_html_a3422e982c01b71612924ac5f1f0d2181"><div class="ttname"><a href="class_word_series.html#a3422e982c01b71612924ac5f1f0d2181">WordSeries::average</a></div><div class="ttdeci">double average</div><div class="ttdoc">Specifies the average of the word series in a particular string.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:39</div></div>
+<div class="ttc" id="aclass_sentence_series_html_a78609974545b5e015f3a5f477d876c4b"><div class="ttname"><a href="class_sentence_series.html#a78609974545b5e015f3a5f477d876c4b">SentenceSeries::word_series</a></div><div class="ttdeci">map&lt; string, WordSeries * &gt; word_series</div><div class="ttdoc">Maps the word string to the word series in a particular string.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:119</div></div>
+<div class="ttc" id="aclass_corpus_html_ad420d9f3cecbc7ea4af0ff68a37e386d"><div class="ttname"><a href="class_corpus.html#ad420d9f3cecbc7ea4af0ff68a37e386d">Corpus::word_index</a></div><div class="ttdeci">vector&lt; string &gt; word_index</div><div class="ttdoc">Maps the index to word string of the word series in a particular filename.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:220</div></div>
+<div class="ttc" id="abasic_ostream_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/io/basic_ostream.html">std::ostream</a></div></div>
+<div class="ttc" id="aclass_word_series_html_ad40f74a195876908084a743b66c7b208"><div class="ttname"><a href="class_word_series.html#ad40f74a195876908084a743b66c7b208">WordSeries::name</a></div><div class="ttdeci">string name</div><div class="ttdoc">Specifies the string name in the data.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:24</div></div>
+<div class="ttc" id="aclass_sentence_series_html_a71ecf2220dbde9a683361a418fd79caa"><div class="ttname"><a href="class_sentence_series.html#a71ecf2220dbde9a683361a418fd79caa">SentenceSeries::filename</a></div><div class="ttdeci">string filename</div><div class="ttdoc">Specifices the filename for the training or testing data.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:107</div></div>
+<div class="ttc" id="aclass_corpus_html_aaf5714da66d6475437fdae9fe262bb6a"><div class="ttname"><a href="class_corpus.html#aaf5714da66d6475437fdae9fe262bb6a">Corpus::batch_size</a></div><div class="ttdeci">uint32_t batch_size</div><div class="ttdoc">Specifices the batches in which the dataset is to be divided into chunks.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:170</div></div>
+<div class="ttc" id="aclass_sentence_series_html"><div class="ttname"><a href="class_sentence_series.html">SentenceSeries</a></div><div class="ttdef"><b>Definition:</b> word_series.hxx:96</div></div>
+<div class="ttc" id="aclass_word_series_html_aed7840684ce132999a2d34a7e26dcd97"><div class="ttname"><a href="class_word_series.html#aed7840684ce132999a2d34a7e26dcd97">WordSeries::values</a></div><div class="ttdeci">vector&lt; double &gt; values</div><div class="ttdoc">Storers the values in the word series respective of the time in a particular string.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:60</div></div>
+<div class="ttc" id="amap_html"><div class="ttname"><a href="http://en.cppreference.com/w/cpp/container/map.html">std::map</a></div></div>
+<div class="ttc" id="aclass_word_series_html_a6902b4c4b6bb2f865a59e4c5e27d7f18"><div class="ttname"><a href="class_word_series.html#a6902b4c4b6bb2f865a59e4c5e27d7f18">WordSeries::std_dev</a></div><div class="ttdeci">double std_dev</div><div class="ttdoc">Specifies the std.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:48</div></div>
+<div class="ttc" id="aclass_corpus_html"><div class="ttname"><a href="class_corpus.html">Corpus</a></div><div class="ttdef"><b>Definition:</b> word_series.hxx:163</div></div>
+<div class="ttc" id="aclass_corpus_html_a96d8a8ed499eb739f08d8d7536008688"><div class="ttname"><a href="class_corpus.html#a96d8a8ed499eb739f08d8d7536008688">Corpus::sent_series</a></div><div class="ttdeci">vector&lt; SentenceSeries * &gt; sent_series</div><div class="ttdoc">stores the Sentence series used in the filenames.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:208</div></div>
+<div class="ttc" id="aclass_corpus_html_a21a1934fd5493a82fc572226639525c6"><div class="ttname"><a href="class_corpus.html#a21a1934fd5493a82fc572226639525c6">Corpus::input_parameter_names</a></div><div class="ttdeci">vector&lt; string &gt; input_parameter_names</div><div class="ttdoc">stores the input parameter names of the filenames.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:192</div></div>
+<div class="ttc" id="aclass_word_series_html_ad1b8dc0e4f367bf0aa4a46ddb114f8c0"><div class="ttname"><a href="class_word_series.html#ad1b8dc0e4f367bf0aa4a46ddb114f8c0">WordSeries::variance</a></div><div class="ttdeci">double variance</div><div class="ttdoc">Specifies the variance of the word series in a particular string.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:53</div></div>
+<div class="ttc" id="aclass_word_series_html_ab61bb7ef53fe10c4ef2077ad70700c25"><div class="ttname"><a href="class_word_series.html#ab61bb7ef53fe10c4ef2077ad70700c25">WordSeries::max</a></div><div class="ttdeci">double max</div><div class="ttdoc">Specifies the maximum of the word series in a particular string.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:44</div></div>
+<div class="ttc" id="aclass_corpus_html_a084591c7f27b8ad55bc68266fe461161"><div class="ttname"><a href="class_corpus.html#a084591c7f27b8ad55bc68266fe461161">Corpus::all_parameter_names</a></div><div class="ttdeci">vector&lt; string &gt; all_parameter_names</div><div class="ttdoc">stores the input parameter names of the filenames.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:202</div></div>
+<div class="ttc" id="aclass_word_series_html"><div class="ttname"><a href="class_word_series.html">WordSeries</a></div><div class="ttdef"><b>Definition:</b> word_series.hxx:17</div></div>
+<div class="ttc" id="aclass_sentence_series_html_a8051bf7722f693797d589fbb6835afc2"><div class="ttname"><a href="class_sentence_series.html#a8051bf7722f693797d589fbb6835afc2">SentenceSeries::number_rows</a></div><div class="ttdeci">int number_rows</div><div class="ttdoc">Specifies the number of the rows in the dataset.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:103</div></div>
+<div class="ttc" id="aclass_word_series_html_a93302deb50a92c6aa6f7b2d8da29fee5"><div class="ttname"><a href="class_word_series.html#a93302deb50a92c6aa6f7b2d8da29fee5">WordSeries::min</a></div><div class="ttdeci">double min</div><div class="ttdoc">Specifies the minimum of the word series in a particular string.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:34</div></div>
+<div class="ttc" id="aclass_corpus_html_a5bfd2fe992d2f34b735b21196b9bd18b"><div class="ttname"><a href="class_corpus.html#a5bfd2fe992d2f34b735b21196b9bd18b">Corpus::test_indexes</a></div><div class="ttdeci">vector&lt; int &gt; test_indexes</div><div class="ttdoc">stores the testing index of the filenames.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:186</div></div>
+<div class="ttc" id="aclass_corpus_html_a7c44a0b8ab422b3fbe30e165e6f1bd34"><div class="ttname"><a href="class_corpus.html#a7c44a0b8ab422b3fbe30e165e6f1bd34">Corpus::vocab</a></div><div class="ttdeci">map&lt; string, int &gt; vocab</div><div class="ttdoc">Maps the word string to the word series in a particular filename.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:225</div></div>
+<div class="ttc" id="aclass_sentence_series_html_ad0c1da927f87e6778900f1e93faf8a8e"><div class="ttname"><a href="class_sentence_series.html#ad0c1da927f87e6778900f1e93faf8a8e">SentenceSeries::word_index</a></div><div class="ttdeci">vector&lt; string &gt; word_index</div><div class="ttdoc">Maps the index to word string of the word series in a particular string.</div><div class="ttdef"><b>Definition:</b> word_series.hxx:115</div></div>
+<div class="ttc" id="aclass_corpus_html_aef1a06e5a764a0ffa2ecc8b4df042692"><div class="ttname"><a href="class_corpus.html#aef1a06e5a764a0ffa2ecc8b4df042692">Corpus::load_word_library</a></div><div class="ttdeci">void load_word_library()</div><div class="ttdoc">Loads the filenames, word index and the vocabulary of the files.</div><div class="ttdef"><b>Definition:</b> word_series.cxx:479</div></div>
+<!-- start footer part -->
+<hr class="footer"/><address class="footer"><small>
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.17
+</small></address>
+</body>
+</html>
diff --git a/docs/latex/Makefile b/docs/latex/Makefile
new file mode 100644
index 00000000..877c9ccc
--- /dev/null
+++ b/docs/latex/Makefile
@@ -0,0 +1,23 @@
+LATEX_CMD=pdflatex
+
+all: refman.pdf
+
+pdf: refman.pdf
+
+refman.pdf: clean refman.tex
+	$(LATEX_CMD) refman
+	makeindex refman.idx
+	$(LATEX_CMD) refman
+	latex_count=8 ; \
+	while egrep -s 'Rerun (LaTeX|to get cross-references right)' refman.log && [ $$latex_count -gt 0 ] ;\
+	    do \
+	      echo "Rerunning latex...." ;\
+	      $(LATEX_CMD) refman ;\
+	      latex_count=`expr $$latex_count - 1` ;\
+	    done
+	makeindex refman.idx
+	$(LATEX_CMD) refman
+
+
+clean:
+	rm -f *.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl refman.pdf
diff --git a/docs/latex/annotated.tex b/docs/latex/annotated.tex
new file mode 100644
index 00000000..3f191e7b
--- /dev/null
+++ b/docs/latex/annotated.tex
@@ -0,0 +1,98 @@
+\doxysection{Class List}
+Here are the classes, structs, unions and interfaces with brief descriptions\+:\begin{DoxyCompactList}
+\item\contentsline{section}{\mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} }{\pageref{class_c_n_n___edge}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} }{\pageref{class_c_n_n___genome}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} }{\pageref{class_c_n_n___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_coin}{Coin}} }{\pageref{struct_coin}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_color}{Color}} }{\pageref{struct_color}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_color_profile}{Color\+Profile}} }{\pageref{struct_color_profile}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_color_tree}{Color\+Tree}} }{\pageref{struct_color_tree}}{}
+\item\contentsline{section}{\mbox{\hyperlink{classconfig__to__arg_1_1_config_to_arg}{config\+\_\+to\+\_\+arg.\+Config\+To\+Arg}} }{\pageref{classconfig__to__arg_1_1_config_to_arg}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_consolidated_statistics}{Consolidated\+Statistics}} }{\pageref{class_consolidated_statistics}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_corpus}{Corpus}} }{\pageref{class_corpus}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structcs__less__than__avg}{cs\+\_\+less\+\_\+than\+\_\+avg}} }{\pageref{structcs__less__than__avg}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structcs__less__than__max}{cs\+\_\+less\+\_\+than\+\_\+max}} }{\pageref{structcs__less__than__max}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structcs__less__than__min}{cs\+\_\+less\+\_\+than\+\_\+min}} }{\pageref{structcs__less__than__min}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_delta___node}{Delta\+\_\+\+Node}} }{\pageref{class_delta___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_e_n_a_r_c___node}{E\+N\+A\+R\+C\+\_\+\+Node}} }{\pageref{class_e_n_a_r_c___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_e_n_a_s___d_a_g___node}{E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node}} }{\pageref{class_e_n_a_s___d_a_g___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} }{\pageref{class_e_x_a_c_t}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_e_x_a_c_t___r_e_s_u_l_t}{E\+X\+A\+C\+T\+\_\+\+R\+E\+S\+U\+LT}} }{\pageref{struct_e_x_a_c_t___r_e_s_u_l_t}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} }{\pageref{class_e_x_a_m_m}}{}
+\item\contentsline{section}{\mbox{\hyperlink{classexamm__task_1_1_examm_task}{examm\+\_\+task.\+Examm\+Task}} }{\pageref{classexamm__task_1_1_examm_task}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_g_r_u___node}{G\+R\+U\+\_\+\+Node}} }{\pageref{class_g_r_u___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_hash}{Hash}} }{\pageref{struct_hash}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_huffman_tree}{Huffman\+Tree}} }{\pageref{struct_huffman_tree}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_image}{Image}} }{\pageref{class_image}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_image_interface}{Image\+Interface}} }{\pageref{class_image_interface}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_images}{Images}} }{\pageref{class_images}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_images_interface}{Images\+Interface}} }{\pageref{class_images_interface}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_island}{Island}} }{\pageref{class_island}}{}
+\item\contentsline{section}{\mbox{\hyperlink{classisland__purging__args_1_1_island_purging_args}{island\+\_\+purging\+\_\+args.\+Island\+Purging\+Args}} }{\pageref{classisland__purging__args_1_1_island_purging_args}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_island_speciation_strategy}{Island\+Speciation\+Strategy}} }{\pageref{class_island_speciation_strategy}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_large_image}{Large\+Image}} }{\pageref{class_large_image}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_large_images}{Large\+Images}} }{\pageref{class_large_images}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structless__than__avg}{less\+\_\+than\+\_\+avg}} }{\pageref{structless__than__avg}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structless__than__dfm__avg}{less\+\_\+than\+\_\+dfm\+\_\+avg}} }{\pageref{structless__than__dfm__avg}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structless__than__dfm__max}{less\+\_\+than\+\_\+dfm\+\_\+max}} }{\pageref{structless__than__dfm__max}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structless__than__dfm__min}{less\+\_\+than\+\_\+dfm\+\_\+min}} }{\pageref{structless__than__dfm__min}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structless__than__max}{less\+\_\+than\+\_\+max}} }{\pageref{structless__than__max}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structless__than__min}{less\+\_\+than\+\_\+min}} }{\pageref{structless__than__min}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_line}{Line}} }{\pageref{class_line}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_lode_p_n_g_color_mode}{Lode\+P\+N\+G\+Color\+Mode}} }{\pageref{struct_lode_p_n_g_color_mode}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_lode_p_n_g_compress_settings}{Lode\+P\+N\+G\+Compress\+Settings}} }{\pageref{struct_lode_p_n_g_compress_settings}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_lode_p_n_g_decoder_settings}{Lode\+P\+N\+G\+Decoder\+Settings}} }{\pageref{struct_lode_p_n_g_decoder_settings}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_lode_p_n_g_decompress_settings}{Lode\+P\+N\+G\+Decompress\+Settings}} }{\pageref{struct_lode_p_n_g_decompress_settings}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_lode_p_n_g_encoder_settings}{Lode\+P\+N\+G\+Encoder\+Settings}} }{\pageref{struct_lode_p_n_g_encoder_settings}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_lode_p_n_g_info}{Lode\+P\+N\+G\+Info}} }{\pageref{struct_lode_p_n_g_info}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_lode_p_n_g_state}{Lode\+P\+N\+G\+State}} }{\pageref{struct_lode_p_n_g_state}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_lode_p_n_g_time}{Lode\+P\+N\+G\+Time}} }{\pageref{struct_lode_p_n_g_time}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_log}{Log}} }{\pageref{class_log}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_log_file}{Log\+File}} }{\pageref{class_log_file}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_l_s_t_m___node}{L\+S\+T\+M\+\_\+\+Node}} }{\pageref{class_l_s_t_m___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_m_g_u___node}{M\+G\+U\+\_\+\+Node}} }{\pageref{class_m_g_u___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap$<$ T $>$}} \\*This implementation of a \mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}} was basically ripped from here\+: \href{https://github.com/itsjohncs/minmaxheap-cpp/blob/master/MinMaxHeap.hpp}{\texttt{ https\+://github.\+com/itsjohncs/minmaxheap-\/cpp/blob/master/\+Min\+Max\+Heap.\+hpp}} }{\pageref{classmin__max__heap}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_mosaic_images}{Mosaic\+Images}} }{\pageref{class_mosaic_images}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_multi_images_interface}{Multi\+Images\+Interface}} }{\pageref{class_multi_images_interface}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_neat_speciation_strategy}{Neat\+Speciation\+Strategy}} }{\pageref{class_neat_speciation_strategy}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} }{\pageref{class_normal_distribution}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_parse_turbines}{Parse\+Turbines}} }{\pageref{class_parse_turbines}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_point}{Point}} }{\pageref{class_point}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_r_a_n_d_o_m___d_a_g___node}{R\+A\+N\+D\+O\+M\+\_\+\+D\+A\+G\+\_\+\+Node}} }{\pageref{class_r_a_n_d_o_m___d_a_g___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{classrec__args_1_1_rec_args}{rec\+\_\+args.\+Rec\+Args}} }{\pageref{classrec__args_1_1_rec_args}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_rectangle}{Rectangle}} }{\pageref{class_rectangle}}{}
+\item\contentsline{section}{\mbox{\hyperlink{struct_result_set}{Result\+Set}} }{\pageref{struct_result_set}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_r_n_n}{R\+NN}} }{\pageref{class_r_n_n}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} }{\pageref{class_r_n_n___edge}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} }{\pageref{class_r_n_n___genome}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_r_n_n___node}{R\+N\+N\+\_\+\+Node}} }{\pageref{class_r_n_n___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} }{\pageref{class_r_n_n___node___interface}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} }{\pageref{class_r_n_n___recurrent___edge}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} }{\pageref{class_run_statistics}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_sentence_series}{Sentence\+Series}} }{\pageref{class_sentence_series}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___c_n_n___edges__by__depth}{sort\+\_\+\+C\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+depth}} }{\pageref{structsort___c_n_n___edges__by__depth}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___c_n_n___edges__by__innovation}{sort\+\_\+\+C\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+innovation}} }{\pageref{structsort___c_n_n___edges__by__innovation}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___c_n_n___edges__by__output__depth}{sort\+\_\+\+C\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+output\+\_\+depth}} }{\pageref{structsort___c_n_n___edges__by__output__depth}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___c_n_n___nodes__by__depth}{sort\+\_\+\+C\+N\+N\+\_\+\+Nodes\+\_\+by\+\_\+depth}} }{\pageref{structsort___c_n_n___nodes__by__depth}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort__genomes__by__fitness}{sort\+\_\+genomes\+\_\+by\+\_\+fitness}} }{\pageref{structsort__genomes__by__fitness}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort__genomes__by__predictions}{sort\+\_\+genomes\+\_\+by\+\_\+predictions}} }{\pageref{structsort__genomes__by__predictions}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort__genomes__by__validation__error}{sort\+\_\+genomes\+\_\+by\+\_\+validation\+\_\+error}} }{\pageref{structsort__genomes__by__validation__error}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___r_n_n___edges__by__depth}{sort\+\_\+\+R\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+depth}} }{\pageref{structsort___r_n_n___edges__by__depth}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___r_n_n___edges__by__innovation}{sort\+\_\+\+R\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+innovation}} }{\pageref{structsort___r_n_n___edges__by__innovation}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___r_n_n___edges__by__output__depth}{sort\+\_\+\+R\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+output\+\_\+depth}} }{\pageref{structsort___r_n_n___edges__by__output__depth}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___r_n_n___nodes__by__depth}{sort\+\_\+\+R\+N\+N\+\_\+\+Nodes\+\_\+by\+\_\+depth}} }{\pageref{structsort___r_n_n___nodes__by__depth}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___r_n_n___nodes__by__innovation}{sort\+\_\+\+R\+N\+N\+\_\+\+Nodes\+\_\+by\+\_\+innovation}} }{\pageref{structsort___r_n_n___nodes__by__innovation}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___r_n_n___recurrent___edges__by__depth}{sort\+\_\+\+R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edges\+\_\+by\+\_\+depth}} }{\pageref{structsort___r_n_n___recurrent___edges__by__depth}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___r_n_n___recurrent___edges__by__innovation}{sort\+\_\+\+R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edges\+\_\+by\+\_\+innovation}} }{\pageref{structsort___r_n_n___recurrent___edges__by__innovation}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structsort___r_n_n___recurrent___edges__by__output__depth}{sort\+\_\+\+R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edges\+\_\+by\+\_\+output\+\_\+depth}} }{\pageref{structsort___r_n_n___recurrent___edges__by__output__depth}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_speciation_strategy}{Speciation\+Strategy}} }{\pageref{class_speciation_strategy}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_species}{Species}} }{\pageref{class_species}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_time_series}{Time\+Series}} }{\pageref{class_time_series}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_time_series_set}{Time\+Series\+Set}} }{\pageref{class_time_series_set}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_time_series_sets}{Time\+Series\+Sets}} }{\pageref{class_time_series_sets}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_tracker}{Tracker}} }{\pageref{class_tracker}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structucvector}{ucvector}} }{\pageref{structucvector}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_u_g_r_n_n___node}{U\+G\+R\+N\+N\+\_\+\+Node}} }{\pageref{class_u_g_r_n_n___node}}{}
+\item\contentsline{section}{\mbox{\hyperlink{structuivector}{uivector}} }{\pageref{structuivector}}{}
+\item\contentsline{section}{\mbox{\hyperlink{class_word_series}{Word\+Series}} }{\pageref{class_word_series}}{}
+\end{DoxyCompactList}
diff --git a/docs/latex/class_c_n_n___edge.tex b/docs/latex/class_c_n_n___edge.tex
new file mode 100644
index 00000000..f79adac2
--- /dev/null
+++ b/docs/latex/class_c_n_n___edge.tex
@@ -0,0 +1,302 @@
+\hypertarget{class_c_n_n___edge}{}\doxysection{C\+N\+N\+\_\+\+Edge Class Reference}
+\label{class_c_n_n___edge}\index{CNN\_Edge@{CNN\_Edge}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a393992439d3fa9f5b8303bdddd37a905}\label{class_c_n_n___edge_a393992439d3fa9f5b8303bdddd37a905}} 
+{\bfseries C\+N\+N\+\_\+\+Edge} (\mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$\+\_\+input\+\_\+node, \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$\+\_\+output\+\_\+node, bool \+\_\+fixed, int \+\_\+innovation\+\_\+number, int \+\_\+type)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a0ca269427c5dcf8a18176f5f84e46de0}\label{class_c_n_n___edge_a0ca269427c5dcf8a18176f5f84e46de0}} 
+\mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$ {\bfseries copy} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a5890de3d1e265af4652f0c06960606d8}\label{class_c_n_n___edge_a5890de3d1e265af4652f0c06960606d8}} 
+bool {\bfseries equals} (\mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$other) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_adc7eb1c61f7dca12b641d6bd3c074764}\label{class_c_n_n___edge_adc7eb1c61f7dca12b641d6bd3c074764}} 
+int {\bfseries get\+\_\+type} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a235115dbbc633422419eab97c0aaa485}\label{class_c_n_n___edge_a235115dbbc633422419eab97c0aaa485}} 
+bool {\bfseries has\+\_\+nan} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a1e106cf86f525d34bde7e46284a92f05}\label{class_c_n_n___edge_a1e106cf86f525d34bde7e46284a92f05}} 
+void {\bfseries reset\+\_\+times} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a62b7b235e66053c76a2336d0e6910f23}\label{class_c_n_n___edge_a62b7b235e66053c76a2336d0e6910f23}} 
+void {\bfseries accumulate\+\_\+times} (float \&total\+\_\+forward\+\_\+time, float \&total\+\_\+backward\+\_\+time, float \&total\+\_\+weight\+\_\+update\+\_\+time)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a3a99e57646dea4a3494a11bf40d0ffe7}\label{class_c_n_n___edge_a3a99e57646dea4a3494a11bf40d0ffe7}} 
+void {\bfseries set\+\_\+needs\+\_\+init} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a84a82475d253dab87a1d3d22a40d8e05}\label{class_c_n_n___edge_a84a82475d253dab87a1d3d22a40d8e05}} 
+bool {\bfseries needs\+\_\+init} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a449f2a47fc8f9010597eceee8937b892}\label{class_c_n_n___edge_a449f2a47fc8f9010597eceee8937b892}} 
+int {\bfseries get\+\_\+filter\+\_\+size} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a89ac5e2224c8c6f9813f95a5c09427a7}\label{class_c_n_n___edge_a89ac5e2224c8c6f9813f95a5c09427a7}} 
+int {\bfseries get\+\_\+filter\+\_\+x} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a71beb960e9d7a47ef1e6d18eb2e443d0}\label{class_c_n_n___edge_a71beb960e9d7a47ef1e6d18eb2e443d0}} 
+int {\bfseries get\+\_\+filter\+\_\+y} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a4093bbf8a52471ee6ec38867b3d664bf}\label{class_c_n_n___edge_a4093bbf8a52471ee6ec38867b3d664bf}} 
+bool {\bfseries is\+\_\+reverse\+\_\+filter\+\_\+x} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_aa0e32f49037c9e2b18dbe0dc6f1b8113}\label{class_c_n_n___edge_aa0e32f49037c9e2b18dbe0dc6f1b8113}} 
+bool {\bfseries is\+\_\+reverse\+\_\+filter\+\_\+y} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a5f2bf2c707f6ac938bd12cabd324a53e}\label{class_c_n_n___edge_a5f2bf2c707f6ac938bd12cabd324a53e}} 
+float {\bfseries get\+\_\+weight} (int i) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a8484cfa7937acc2954b4b8f1fabba0bb}\label{class_c_n_n___edge_a8484cfa7937acc2954b4b8f1fabba0bb}} 
+float {\bfseries get\+\_\+weight\+\_\+update} (int i) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_adecd1554fc8c3f3293f87e7a25bd50a1}\label{class_c_n_n___edge_adecd1554fc8c3f3293f87e7a25bd50a1}} 
+void {\bfseries update\+\_\+weight} (int i, float diff)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ab1498bfe9487f2ed7882407684fd56e0}\label{class_c_n_n___edge_ab1498bfe9487f2ed7882407684fd56e0}} 
+float {\bfseries get\+\_\+scale} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ad5c41eb1d293ad8202c42a19d2a8f059}\label{class_c_n_n___edge_ad5c41eb1d293ad8202c42a19d2a8f059}} 
+void {\bfseries propagate\+\_\+weight\+\_\+count} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ae7a32253d2af6e39275dbe72d39adc84}\label{class_c_n_n___edge_ae7a32253d2af6e39275dbe72d39adc84}} 
+void {\bfseries save\+\_\+best\+\_\+weights} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a57c8f1cd4205ebe4d694f65af9f01b9f}\label{class_c_n_n___edge_a57c8f1cd4205ebe4d694f65af9f01b9f}} 
+void {\bfseries set\+\_\+weights\+\_\+to\+\_\+best} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a90d71a1f82e18c45d73265c39194262f}\label{class_c_n_n___edge_a90d71a1f82e18c45d73265c39194262f}} 
+bool {\bfseries set\+\_\+nodes} (const \textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ nodes)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a0c3e9187be900987d5d7bd443dfbde85}\label{class_c_n_n___edge_a0c3e9187be900987d5d7bd443dfbde85}} 
+void {\bfseries set\+\_\+pools} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a9094afaa98fc598b0b6760b2c364f6e3}\label{class_c_n_n___edge_a9094afaa98fc598b0b6760b2c364f6e3}} 
+void {\bfseries initialize\+\_\+weights} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&\textbf{ normal\+\_\+distribution})
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a879047fcaa69d34a75aa414954ad1fea}\label{class_c_n_n___edge_a879047fcaa69d34a75aa414954ad1fea}} 
+void {\bfseries reset\+\_\+velocities} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a2c42f6f5424d6c982b97f19452870b05}\label{class_c_n_n___edge_a2c42f6f5424d6c982b97f19452870b05}} 
+void {\bfseries resize} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a6e7547eb09765a8dd73893286e147d6a}\label{class_c_n_n___edge_a6e7547eb09765a8dd73893286e147d6a}} 
+void {\bfseries alter\+\_\+edge\+\_\+type} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a97caaebdefd16f5097fb62262b02a90a}\label{class_c_n_n___edge_a97caaebdefd16f5097fb62262b02a90a}} 
+void {\bfseries disable} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ab141cc75a239789eb7321787698c72f2}\label{class_c_n_n___edge_ab141cc75a239789eb7321787698c72f2}} 
+void {\bfseries enable} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_aece1d64d23c03ab3dd1f9ab2db11d0fb}\label{class_c_n_n___edge_aece1d64d23c03ab3dd1f9ab2db11d0fb}} 
+bool {\bfseries is\+\_\+enabled} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a34119f0fce37aada658664c6948ff207}\label{class_c_n_n___edge_a34119f0fce37aada658664c6948ff207}} 
+bool {\bfseries is\+\_\+disabled} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a3e8a478c19c65fa028d28809a5a80d4a}\label{class_c_n_n___edge_a3e8a478c19c65fa028d28809a5a80d4a}} 
+void {\bfseries update\+\_\+batch\+\_\+size} (int new\+\_\+batch\+\_\+size)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a4cdf5858bd94ee593db3a6052664a845}\label{class_c_n_n___edge_a4cdf5858bd94ee593db3a6052664a845}} 
+bool {\bfseries is\+\_\+reachable} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a46ffbd31b402c1c5434e6551e8375cbc}\label{class_c_n_n___edge_a46ffbd31b402c1c5434e6551e8375cbc}} 
+bool {\bfseries is\+\_\+forward\+\_\+visited} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a3d0bb8e668901098c485b0cb4a61df68}\label{class_c_n_n___edge_a3d0bb8e668901098c485b0cb4a61df68}} 
+bool {\bfseries is\+\_\+reverse\+\_\+visited} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a1413564a9b66050e78e3a34e55b735f1}\label{class_c_n_n___edge_a1413564a9b66050e78e3a34e55b735f1}} 
+void {\bfseries forward\+\_\+visit} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a9275d5e3f00e01685b99f57071d81eaf}\label{class_c_n_n___edge_a9275d5e3f00e01685b99f57071d81eaf}} 
+void {\bfseries reverse\+\_\+visit} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a830864feac5da7d0aa9e2a0c3cc17591}\label{class_c_n_n___edge_a830864feac5da7d0aa9e2a0c3cc17591}} 
+void {\bfseries set\+\_\+unvisited} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a5d16bae951861b2ff41875b8fcd1b3e4}\label{class_c_n_n___edge_a5d16bae951861b2ff41875b8fcd1b3e4}} 
+bool {\bfseries is\+\_\+filter\+\_\+correct} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a0fb1635e09c843946ad0c2fddbccabb0}\label{class_c_n_n___edge_a0fb1635e09c843946ad0c2fddbccabb0}} 
+int {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a562291e832437c984e5b9410e237d67a}\label{class_c_n_n___edge_a562291e832437c984e5b9410e237d67a}} 
+int {\bfseries get\+\_\+batch\+\_\+size} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a5f8bb38e098ce2b23149a9728d394e4e}\label{class_c_n_n___edge_a5f8bb38e098ce2b23149a9728d394e4e}} 
+int {\bfseries get\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ad68d37a115713873530c80e1af401ed3}\label{class_c_n_n___edge_ad68d37a115713873530c80e1af401ed3}} 
+int {\bfseries get\+\_\+input\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a0b0f8ad1f6fc153880560d100f853472}\label{class_c_n_n___edge_a0b0f8ad1f6fc153880560d100f853472}} 
+int {\bfseries get\+\_\+output\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ab60be7bea68b136a0cead7d41b53d6d9}\label{class_c_n_n___edge_ab60be7bea68b136a0cead7d41b53d6d9}} 
+bool {\bfseries connects} (int n1, int n2) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a107d216821713cc2f949966681a47456}\label{class_c_n_n___edge_a107d216821713cc2f949966681a47456}} 
+bool {\bfseries has\+\_\+zero\+\_\+weight} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a1b6e79e46537e87c394c59cbb0086f55}\label{class_c_n_n___edge_a1b6e79e46537e87c394c59cbb0086f55}} 
+bool {\bfseries has\+\_\+zero\+\_\+best\+\_\+weight} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a4952f6c8bc8ac66031c41eda0ccc8307}\label{class_c_n_n___edge_a4952f6c8bc8ac66031c41eda0ccc8307}} 
+\mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ {\bfseries get\+\_\+input\+\_\+node} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a8dd11313b721e4d2aba7e0cf97a2f965}\label{class_c_n_n___edge_a8dd11313b721e4d2aba7e0cf97a2f965}} 
+\mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ {\bfseries get\+\_\+output\+\_\+node} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_afe494e7869d0f2a6333404fd69658366}\label{class_c_n_n___edge_afe494e7869d0f2a6333404fd69658366}} 
+void {\bfseries print} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_af569644fcce0ec92dc06a6a6ef19a230}\label{class_c_n_n___edge_af569644fcce0ec92dc06a6a6ef19a230}} 
+void {\bfseries check\+\_\+output\+\_\+update} (const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ $>$ \&output, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ $>$ \&input, float value, float weight, float previous\+\_\+output, int batch\+\_\+number, int in\+\_\+y, int in\+\_\+x, int out\+\_\+y, int out\+\_\+x)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a8299ff4d423ffa723361b9a43bd16a69}\label{class_c_n_n___edge_a8299ff4d423ffa723361b9a43bd16a69}} 
+void {\bfseries check\+\_\+weight\+\_\+update} (const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ $>$ \&input, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ $>$ \&input\+\_\+deltas, float delta, float previous\+\_\+delta, float weight\+\_\+update, float previous\+\_\+weight\+\_\+update, int batch\+\_\+number, int out\+\_\+y, int out\+\_\+x, int in\+\_\+y, int in\+\_\+x)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a1d8a8d6b8c20df05c9b720289ca318f8}\label{class_c_n_n___edge_a1d8a8d6b8c20df05c9b720289ca318f8}} 
+void {\bfseries propagate\+\_\+forward} (bool training, bool accumulate\+\_\+test\+\_\+statistics, float epsilon, float alpha, bool perform\+\_\+dropout, float hidden\+\_\+dropout\+\_\+probability, \textbf{ minstd\+\_\+rand0} \&generator)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a94c37324e2d6d606103de3fb62db7118}\label{class_c_n_n___edge_a94c37324e2d6d606103de3fb62db7118}} 
+void {\bfseries propagate\+\_\+backward} (bool training, float mu, float learning\+\_\+rate, float epsilon)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ac3e956a85a405b2bcf8fe8ab6d8e1e58}\label{class_c_n_n___edge_ac3e956a85a405b2bcf8fe8ab6d8e1e58}} 
+void {\bfseries update\+\_\+weights} (float mu, float learning\+\_\+rate, float weight\+\_\+decay)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ad170b84e87da90339233112f86e1613e}\label{class_c_n_n___edge_ad170b84e87da90339233112f86e1613e}} 
+void {\bfseries print\+\_\+statistics} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a29904381ca17b002223b2361a6b53f04}\label{class_c_n_n___edge_a29904381ca17b002223b2361a6b53f04}} 
+bool {\bfseries is\+\_\+identical} (const \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$other, bool testing\+\_\+checkpoint)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_af93eb3353bc0d6e81b4cf8bfb6847aa9}\label{class_c_n_n___edge_af93eb3353bc0d6e81b4cf8bfb6847aa9}} 
+int {\bfseries edge\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a394b667358dd4a8110005032d9836319}\label{class_c_n_n___edge_a394b667358dd4a8110005032d9836319}} 
+int {\bfseries exact\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a83c2fb1f602d7e5d7129532eaab412b8}\label{class_c_n_n___edge_a83c2fb1f602d7e5d7129532eaab412b8}} 
+int {\bfseries genome\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a327dca105036a7d4a8e90cfb11e9658e}\label{class_c_n_n___edge_a327dca105036a7d4a8e90cfb11e9658e}} 
+int {\bfseries type}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a91dcb21d5dceff5dba93e8d77ff79773}\label{class_c_n_n___edge_a91dcb21d5dceff5dba93e8d77ff79773}} 
+int {\bfseries innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a29d56aa8136b0c4beacd200de4e4b4a3}\label{class_c_n_n___edge_a29d56aa8136b0c4beacd200de4e4b4a3}} 
+int {\bfseries input\+\_\+node\+\_\+innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_af7696207cb7be7ca7457090fd50e723e}\label{class_c_n_n___edge_af7696207cb7be7ca7457090fd50e723e}} 
+int {\bfseries output\+\_\+node\+\_\+innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a04c1a41e0a6887d9baa01f07b038b0d9}\label{class_c_n_n___edge_a04c1a41e0a6887d9baa01f07b038b0d9}} 
+\mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ {\bfseries input\+\_\+node}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a73943cbef6220099d2907acdd5c25de0}\label{class_c_n_n___edge_a73943cbef6220099d2907acdd5c25de0}} 
+\mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ {\bfseries output\+\_\+node}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a6ef99178874979dc7d8ea5427f4a4d4d}\label{class_c_n_n___edge_a6ef99178874979dc7d8ea5427f4a4d4d}} 
+int {\bfseries batch\+\_\+size}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_aff731cfe8b0554458edb8351987f006f}\label{class_c_n_n___edge_aff731cfe8b0554458edb8351987f006f}} 
+int {\bfseries filter\+\_\+x}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a26f3c199f299af851dd4605abf1807b4}\label{class_c_n_n___edge_a26f3c199f299af851dd4605abf1807b4}} 
+int {\bfseries filter\+\_\+y}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a002f9a9abd7bd9432cf7131d0dcc2c78}\label{class_c_n_n___edge_a002f9a9abd7bd9432cf7131d0dcc2c78}} 
+int {\bfseries filter\+\_\+size}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_aeef2e1f9e311fdd9294dc62ade5be8c6}\label{class_c_n_n___edge_aeef2e1f9e311fdd9294dc62ade5be8c6}} 
+float $\ast$ {\bfseries weights}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a9092c98c254c9d4daa72dc01936726d4}\label{class_c_n_n___edge_a9092c98c254c9d4daa72dc01936726d4}} 
+float $\ast$ {\bfseries weight\+\_\+updates}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a61bc33918727171b3f63ef4732e044b9}\label{class_c_n_n___edge_a61bc33918727171b3f63ef4732e044b9}} 
+float $\ast$ {\bfseries best\+\_\+weights}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a4cf16caf63f4f39b33a308d3a28ead36}\label{class_c_n_n___edge_a4cf16caf63f4f39b33a308d3a28ead36}} 
+float $\ast$ {\bfseries previous\+\_\+velocity}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_adfec5ccecca015c5a6c35cf74a806d54}\label{class_c_n_n___edge_adfec5ccecca015c5a6c35cf74a806d54}} 
+float $\ast$ {\bfseries best\+\_\+velocity}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a53599d438d226caf6e8eff16bada29b1}\label{class_c_n_n___edge_a53599d438d226caf6e8eff16bada29b1}} 
+float {\bfseries scale}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ad854815b7cc6e806a7d4a047402eacd7}\label{class_c_n_n___edge_ad854815b7cc6e806a7d4a047402eacd7}} 
+float {\bfseries best\+\_\+scale}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a14d1270e6660cd0a7d583f5abd52cb14}\label{class_c_n_n___edge_a14d1270e6660cd0a7d583f5abd52cb14}} 
+float {\bfseries previous\+\_\+velocity\+\_\+scale}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a5714ae5816bb0c630c7bbcb8b976d226}\label{class_c_n_n___edge_a5714ae5816bb0c630c7bbcb8b976d226}} 
+float {\bfseries best\+\_\+velocity\+\_\+scale}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a285c0bd37f85765f8ccbe2e9fa822fd9}\label{class_c_n_n___edge_a285c0bd37f85765f8ccbe2e9fa822fd9}} 
+\textbf{ vector}$<$ int $>$ {\bfseries y\+\_\+pools}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ac1a332de0880bc8559af455194590f3a}\label{class_c_n_n___edge_ac1a332de0880bc8559af455194590f3a}} 
+\textbf{ vector}$<$ int $>$ {\bfseries y\+\_\+pool\+\_\+offset}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a2c0ddda5ad30f47c7c17cb6ff71884f4}\label{class_c_n_n___edge_a2c0ddda5ad30f47c7c17cb6ff71884f4}} 
+\textbf{ vector}$<$ int $>$ {\bfseries x\+\_\+pools}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a9cd2c032fa44f087d3cdb2ddacdc8b5e}\label{class_c_n_n___edge_a9cd2c032fa44f087d3cdb2ddacdc8b5e}} 
+\textbf{ vector}$<$ int $>$ {\bfseries x\+\_\+pool\+\_\+offset}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a8e6e94d3fc108fd597ab4c276aac7de7}\label{class_c_n_n___edge_a8e6e94d3fc108fd597ab4c276aac7de7}} 
+bool {\bfseries fixed}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_afc168fec81b44a696a87605f5173f71b}\label{class_c_n_n___edge_afc168fec81b44a696a87605f5173f71b}} 
+bool {\bfseries disabled}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_acf502d059b4a7e7adce337ecd32b7d52}\label{class_c_n_n___edge_acf502d059b4a7e7adce337ecd32b7d52}} 
+bool {\bfseries forward\+\_\+visited}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a3de0d853b4c8fb94ce0ad7e919fc1ad9}\label{class_c_n_n___edge_a3de0d853b4c8fb94ce0ad7e919fc1ad9}} 
+bool {\bfseries reverse\+\_\+visited}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_aeb0b4263d8de812eeb744bcda1450392}\label{class_c_n_n___edge_aeb0b4263d8de812eeb744bcda1450392}} 
+bool {\bfseries reverse\+\_\+filter\+\_\+x}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a239c6883dc77a2b2595409256ec0d5fd}\label{class_c_n_n___edge_a239c6883dc77a2b2595409256ec0d5fd}} 
+bool {\bfseries reverse\+\_\+filter\+\_\+y}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_af3316b68e4c8dbfbb74b2a41c45685e5}\label{class_c_n_n___edge_af3316b68e4c8dbfbb74b2a41c45685e5}} 
+bool {\bfseries needs\+\_\+initialization}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_adc3f7d1a84234d4cf8fe2b5e15079435}\label{class_c_n_n___edge_adc3f7d1a84234d4cf8fe2b5e15079435}} 
+float {\bfseries propagate\+\_\+backward\+\_\+time}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_a577df1b2b7d652fb0b51d995fe9e4188}\label{class_c_n_n___edge_a577df1b2b7d652fb0b51d995fe9e4188}} 
+float {\bfseries propagate\+\_\+forward\+\_\+time}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ac099a1ba29c489842c9de557d3f330cb}\label{class_c_n_n___edge_ac099a1ba29c489842c9de557d3f330cb}} 
+float {\bfseries weight\+\_\+update\+\_\+time}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ad5af187ffab233b052f2d1cf35ebcb06}\label{class_c_n_n___edge_ad5af187ffab233b052f2d1cf35ebcb06}} 
+\textbf{ ostream} \& {\bfseries operator$<$$<$} (\textbf{ ostream} \&os, const \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$flight)
+\item 
+\mbox{\Hypertarget{class_c_n_n___edge_ac97834d05fe9cba14891bae85445e571}\label{class_c_n_n___edge_ac97834d05fe9cba14891bae85445e571}} 
+\textbf{ istream} \& {\bfseries operator$>$$>$} (\textbf{ istream} \&is, \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$flight)
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+cnn/cnn\+\_\+edge.\+hxx\item 
+cnn/cnn\+\_\+edge.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_c_n_n___genome.tex b/docs/latex/class_c_n_n___genome.tex
new file mode 100644
index 00000000..74f4c20c
--- /dev/null
+++ b/docs/latex/class_c_n_n___genome.tex
@@ -0,0 +1,437 @@
+\hypertarget{class_c_n_n___genome}{}\doxysection{C\+N\+N\+\_\+\+Genome Class Reference}
+\label{class_c_n_n___genome}\index{CNN\_Genome@{CNN\_Genome}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ae18524655bb0300fe3668d865d5c0df6}\label{class_c_n_n___genome_ae18524655bb0300fe3668d865d5c0df6}} 
+\mbox{\hyperlink{class_c_n_n___genome_ae18524655bb0300fe3668d865d5c0df6}{C\+N\+N\+\_\+\+Genome}} (\textbf{ string} filename, bool is\+\_\+checkpoint)
+\begin{DoxyCompactList}\small\item\em Initialize a genome from a file. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ab21934379e8bda34b63578bc21048b2a}\label{class_c_n_n___genome_ab21934379e8bda34b63578bc21048b2a}} 
+{\bfseries C\+N\+N\+\_\+\+Genome} (\textbf{ istream} \&in, bool is\+\_\+checkpoint)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ae4b107989d96112f5a911706d1e907d4}\label{class_c_n_n___genome_ae4b107989d96112f5a911706d1e907d4}} 
+\mbox{\hyperlink{class_c_n_n___genome_ae4b107989d96112f5a911706d1e907d4}{C\+N\+N\+\_\+\+Genome}} (int \+\_\+generation\+\_\+id, int \+\_\+padding, int \+\_\+number\+\_\+training\+\_\+images, int \+\_\+number\+\_\+validation\+\_\+images, int \+\_\+number\+\_\+test\+\_\+images, int seed, int \+\_\+max\+\_\+epochs, bool \+\_\+reset\+\_\+weights, int velocity\+\_\+reset, float \+\_\+mu, float \+\_\+mu\+\_\+delta, float \+\_\+learning\+\_\+rate, float \+\_\+learning\+\_\+rate\+\_\+delta, float \+\_\+weight\+\_\+decay, float \+\_\+weight\+\_\+decay\+\_\+delta, int \+\_\+batch\+\_\+size, float \+\_\+epsilon, float \+\_\+alpha, float \+\_\+input\+\_\+dropout\+\_\+probability, float \+\_\+hidden\+\_\+dropout\+\_\+probability, const \textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ \&\+\_\+nodes, const \textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$ $>$ \&\+\_\+edges)
+\begin{DoxyCompactList}\small\item\em Iniitalize a genome from a set of nodes and edges. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af0bb41aec1d8b31142f04fb7daaf26e1}\label{class_c_n_n___genome_af0bb41aec1d8b31142f04fb7daaf26e1}} 
+float {\bfseries get\+\_\+version} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1416c5453d71d7a114fd91ba7263d990}\label{class_c_n_n___genome_a1416c5453d71d7a114fd91ba7263d990}} 
+\textbf{ string} {\bfseries get\+\_\+version\+\_\+str} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ae55578d56f9d2d3db133ee6d6aca943e}\label{class_c_n_n___genome_ae55578d56f9d2d3db133ee6d6aca943e}} 
+int {\bfseries get\+\_\+genome\+\_\+id} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1186779df9e221abe5103fa00bcee784}\label{class_c_n_n___genome_a1186779df9e221abe5103fa00bcee784}} 
+int {\bfseries get\+\_\+exact\+\_\+id} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a8c8a383caa0e74941e16769580a73bb9}\label{class_c_n_n___genome_a8c8a383caa0e74941e16769580a73bb9}} 
+bool {\bfseries equals} (\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$other) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a4195a122389cbeadf5ee98e244f1d797}\label{class_c_n_n___genome_a4195a122389cbeadf5ee98e244f1d797}} 
+void {\bfseries print\+\_\+results} (\textbf{ ostream} \&out) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ac6fc3a34ca5fb67b2817144790a24abf}\label{class_c_n_n___genome_ac6fc3a34ca5fb67b2817144790a24abf}} 
+void {\bfseries print\+\_\+progress} (\textbf{ ostream} \&out, \textbf{ string} progress\+\_\+name, float total\+\_\+error, int correct\+\_\+predictions, int number\+\_\+images) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af19d64181ce63fd22ca0e3847d7b4138}\label{class_c_n_n___genome_af19d64181ce63fd22ca0e3847d7b4138}} 
+int {\bfseries get\+\_\+number\+\_\+training\+\_\+images} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a9cf04a3f8504f9eba4596626fed25b3a}\label{class_c_n_n___genome_a9cf04a3f8504f9eba4596626fed25b3a}} 
+int {\bfseries get\+\_\+number\+\_\+validation\+\_\+images} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a5ac5e4639b6732076a6630204c9b52c1}\label{class_c_n_n___genome_a5ac5e4639b6732076a6630204c9b52c1}} 
+int {\bfseries get\+\_\+number\+\_\+test\+\_\+images} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af7069613effa874c2ae4fc1bc81c7252}\label{class_c_n_n___genome_af7069613effa874c2ae4fc1bc81c7252}} 
+int {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ab86b3c90222f0c62f3de8c08daa8213b}\label{class_c_n_n___genome_ab86b3c90222f0c62f3de8c08daa8213b}} 
+int {\bfseries get\+\_\+padding} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a58e7ac382ba0d6c50437607e27cec493}\label{class_c_n_n___genome_a58e7ac382ba0d6c50437607e27cec493}} 
+int {\bfseries get\+\_\+operations\+\_\+estimate} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ae59e3d08935cfdf70d6fa52165d1baae}\label{class_c_n_n___genome_ae59e3d08935cfdf70d6fa52165d1baae}} 
+void {\bfseries set\+\_\+progress\+\_\+function} (int($\ast$\+\_\+progress\+\_\+function)(float))
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aee4a6c206052e77fc1f22cf9f60b32a2}\label{class_c_n_n___genome_aee4a6c206052e77fc1f22cf9f60b32a2}} 
+int {\bfseries get\+\_\+generation\+\_\+id} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_acc1d545155b43baf4b50cfe1f6ebff5d}\label{class_c_n_n___genome_acc1d545155b43baf4b50cfe1f6ebff5d}} 
+float {\bfseries get\+\_\+best\+\_\+validation\+\_\+error} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a213b77af2b5e494ce27a819cfdd1dca7}\label{class_c_n_n___genome_a213b77af2b5e494ce27a819cfdd1dca7}} 
+float {\bfseries get\+\_\+best\+\_\+validation\+\_\+rate} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a40423dc3b69a304a44fc6c8eee93018e}\label{class_c_n_n___genome_a40423dc3b69a304a44fc6c8eee93018e}} 
+int {\bfseries get\+\_\+best\+\_\+validation\+\_\+predictions} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ab23554e9eecbeb27850d0d7363b29b2c}\label{class_c_n_n___genome_ab23554e9eecbeb27850d0d7363b29b2c}} 
+float {\bfseries get\+\_\+training\+\_\+error} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a96cafb18d364c500af0c6888ca8f97be}\label{class_c_n_n___genome_a96cafb18d364c500af0c6888ca8f97be}} 
+float {\bfseries get\+\_\+training\+\_\+rate} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a189a3d7f3247bda91fbda8a27a4c79b4}\label{class_c_n_n___genome_a189a3d7f3247bda91fbda8a27a4c79b4}} 
+int {\bfseries get\+\_\+training\+\_\+predictions} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a7f947e20da9ff95bad666ff945be6884}\label{class_c_n_n___genome_a7f947e20da9ff95bad666ff945be6884}} 
+float {\bfseries get\+\_\+test\+\_\+error} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_afdbd689521112afc854918fa89688c50}\label{class_c_n_n___genome_afdbd689521112afc854918fa89688c50}} 
+float {\bfseries get\+\_\+test\+\_\+rate} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1480570ea904cf79b10ed1cb2f450f25}\label{class_c_n_n___genome_a1480570ea904cf79b10ed1cb2f450f25}} 
+int {\bfseries get\+\_\+test\+\_\+predictions} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ac8e94c459a0e700fbf22589ed76e5e01}\label{class_c_n_n___genome_ac8e94c459a0e700fbf22589ed76e5e01}} 
+int {\bfseries get\+\_\+best\+\_\+epoch} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1a014a77880328435a83c02696c7c839}\label{class_c_n_n___genome_a1a014a77880328435a83c02696c7c839}} 
+int {\bfseries get\+\_\+epoch} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aef9229d56cccbef1b27b80e913e32cf1}\label{class_c_n_n___genome_aef9229d56cccbef1b27b80e913e32cf1}} 
+int {\bfseries get\+\_\+max\+\_\+epochs} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a57d0bcd832ac1ba4a4935802d522eeae}\label{class_c_n_n___genome_a57d0bcd832ac1ba4a4935802d522eeae}} 
+bool {\bfseries sanity\+\_\+check} (int type)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1f7e009a473c0c976ae38f8dbdbba651}\label{class_c_n_n___genome_a1f7e009a473c0c976ae38f8dbdbba651}} 
+bool {\bfseries visit\+\_\+nodes} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a77d372ff192b058f1f2c402ebfcc5d88}\label{class_c_n_n___genome_a77d372ff192b058f1f2c402ebfcc5d88}} 
+void {\bfseries get\+\_\+node\+\_\+copies} (\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ \&node\+\_\+copies) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a3a2ca7ebf67582adaa974ce34719ba86}\label{class_c_n_n___genome_a3a2ca7ebf67582adaa974ce34719ba86}} 
+void {\bfseries get\+\_\+edge\+\_\+copies} (\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$ $>$ \&edge\+\_\+copies) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1b25477dcf14069f6fbd22519bfe045a}\label{class_c_n_n___genome_a1b25477dcf14069f6fbd22519bfe045a}} 
+const \textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ {\bfseries get\+\_\+nodes} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a812e09d1d3a7b7b692dc90e3eadcade2}\label{class_c_n_n___genome_a812e09d1d3a7b7b692dc90e3eadcade2}} 
+const \textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$ $>$ {\bfseries get\+\_\+edges} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af01fbb1efcd85f8b3b4193054b23b026}\label{class_c_n_n___genome_af01fbb1efcd85f8b3b4193054b23b026}} 
+\mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ {\bfseries get\+\_\+node} (int node\+\_\+position)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a6e149da8cfd3fdba2d9fa4328793c56c}\label{class_c_n_n___genome_a6e149da8cfd3fdba2d9fa4328793c56c}} 
+\mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$ {\bfseries get\+\_\+edge} (int edge\+\_\+position)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_abc2744e4baa6babaef51a9d9a88c3ceb}\label{class_c_n_n___genome_abc2744e4baa6babaef51a9d9a88c3ceb}} 
+float {\bfseries get\+\_\+initial\+\_\+mu} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a9458d8f45ffa3f99e72d54cdc26ed996}\label{class_c_n_n___genome_a9458d8f45ffa3f99e72d54cdc26ed996}} 
+float {\bfseries get\+\_\+mu} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ab0db2dbb95cc5994d2238a2175416a7e}\label{class_c_n_n___genome_ab0db2dbb95cc5994d2238a2175416a7e}} 
+float {\bfseries get\+\_\+mu\+\_\+delta} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a8d4b52580fb57549d1f02abb017122b7}\label{class_c_n_n___genome_a8d4b52580fb57549d1f02abb017122b7}} 
+float {\bfseries get\+\_\+initial\+\_\+learning\+\_\+rate} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a77e5ff16a16fd684d9560e7f6cb4d1ce}\label{class_c_n_n___genome_a77e5ff16a16fd684d9560e7f6cb4d1ce}} 
+float {\bfseries get\+\_\+learning\+\_\+rate} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a337a3dc3e61ed54cf933d440e3273f1d}\label{class_c_n_n___genome_a337a3dc3e61ed54cf933d440e3273f1d}} 
+float {\bfseries get\+\_\+learning\+\_\+rate\+\_\+delta} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a54be8a8283134d3604229f8db36c4925}\label{class_c_n_n___genome_a54be8a8283134d3604229f8db36c4925}} 
+float {\bfseries get\+\_\+initial\+\_\+weight\+\_\+decay} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ac681a2bdfd1c62dd094852202f7586a1}\label{class_c_n_n___genome_ac681a2bdfd1c62dd094852202f7586a1}} 
+float {\bfseries get\+\_\+weight\+\_\+decay} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af917480e3106d18bfaf6efe506b5bdbd}\label{class_c_n_n___genome_af917480e3106d18bfaf6efe506b5bdbd}} 
+float {\bfseries get\+\_\+weight\+\_\+decay\+\_\+delta} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1da04fd2ccb5f6713f1b6dab16475e7e}\label{class_c_n_n___genome_a1da04fd2ccb5f6713f1b6dab16475e7e}} 
+int {\bfseries get\+\_\+batch\+\_\+size} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a86be8901d0ad32425e9c5bc061f9cc16}\label{class_c_n_n___genome_a86be8901d0ad32425e9c5bc061f9cc16}} 
+float {\bfseries get\+\_\+alpha} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a560aa11ea77f947fc7b34317061ed136}\label{class_c_n_n___genome_a560aa11ea77f947fc7b34317061ed136}} 
+int {\bfseries get\+\_\+velocity\+\_\+reset} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af8addfaca375ff55d55659618e58d539}\label{class_c_n_n___genome_af8addfaca375ff55d55659618e58d539}} 
+float {\bfseries get\+\_\+input\+\_\+dropout\+\_\+probability} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a2f9b39d44e214a47574a86756c6e3518}\label{class_c_n_n___genome_a2f9b39d44e214a47574a86756c6e3518}} 
+float {\bfseries get\+\_\+hidden\+\_\+dropout\+\_\+probability} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_abf55862d06230d2288952ca375a48f13}\label{class_c_n_n___genome_abf55862d06230d2288952ca375a48f13}} 
+int {\bfseries get\+\_\+number\+\_\+enabled\+\_\+pooling\+\_\+edges} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a8b6e1c4ff9ef182fdf5ae6670cd7b21a}\label{class_c_n_n___genome_a8b6e1c4ff9ef182fdf5ae6670cd7b21a}} 
+int {\bfseries get\+\_\+number\+\_\+enabled\+\_\+convolutional\+\_\+edges} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a021173acc8f2cb715edc0c53c191ca53}\label{class_c_n_n___genome_a021173acc8f2cb715edc0c53c191ca53}} 
+int {\bfseries get\+\_\+number\+\_\+enabled\+\_\+edges} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a5f782c1644fd12ca91266cf542e065dd}\label{class_c_n_n___genome_a5f782c1644fd12ca91266cf542e065dd}} 
+int {\bfseries get\+\_\+number\+\_\+enabled\+\_\+nodes} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a11b24b766bdddbb28c8fdf9dca8d574a}\label{class_c_n_n___genome_a11b24b766bdddbb28c8fdf9dca8d574a}} 
+int {\bfseries get\+\_\+number\+\_\+edges} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a48fc01c03e5a9d56a86ed1f50b94feb2}\label{class_c_n_n___genome_a48fc01c03e5a9d56a86ed1f50b94feb2}} 
+int {\bfseries get\+\_\+number\+\_\+nodes} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aae660fe85174a2885cf6b1c71fb7b841}\label{class_c_n_n___genome_aae660fe85174a2885cf6b1c71fb7b841}} 
+int {\bfseries get\+\_\+number\+\_\+softmax\+\_\+nodes} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1d00576381fe9efc259b8155118d0335}\label{class_c_n_n___genome_a1d00576381fe9efc259b8155118d0335}} 
+int {\bfseries get\+\_\+number\+\_\+input\+\_\+nodes} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_afca459f19b3eea0d83526babb32136e7}\label{class_c_n_n___genome_afca459f19b3eea0d83526babb32136e7}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ {\bfseries get\+\_\+reachable\+\_\+nodes} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_adc666fe37f2e415ed0f532b1c618bf3c}\label{class_c_n_n___genome_adc666fe37f2e415ed0f532b1c618bf3c}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ {\bfseries get\+\_\+disabled\+\_\+nodes} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ac826dff27daecd13c162a9eee491e418}\label{class_c_n_n___genome_ac826dff27daecd13c162a9eee491e418}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ {\bfseries get\+\_\+reachable\+\_\+hidden\+\_\+nodes} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_afb475602c0a6d4967cdad87322b134c7}\label{class_c_n_n___genome_afb475602c0a6d4967cdad87322b134c7}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$ $>$ {\bfseries get\+\_\+reachable\+\_\+edges} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a9656139298afb536faae6c25fe5264ae}\label{class_c_n_n___genome_a9656139298afb536faae6c25fe5264ae}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$ $>$ {\bfseries get\+\_\+disabled\+\_\+edges} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aa597a2315550e2354ce1abf19353113c}\label{class_c_n_n___genome_aa597a2315550e2354ce1abf19353113c}} 
+void {\bfseries add\+\_\+node} (\mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$node)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a74cdf069363531153ead12755fe0818d}\label{class_c_n_n___genome_a74cdf069363531153ead12755fe0818d}} 
+void {\bfseries add\+\_\+edge} (\mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$edge)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ad7dab31282a3201c351083d777b0b4e1}\label{class_c_n_n___genome_ad7dab31282a3201c351083d777b0b4e1}} 
+bool {\bfseries disable\+\_\+edge} (int edge\+\_\+position)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aca2d62978470998f101b47b1c68790f9}\label{class_c_n_n___genome_aca2d62978470998f101b47b1c68790f9}} 
+void {\bfseries resize\+\_\+edges\+\_\+around\+\_\+node} (int node\+\_\+position)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a60170454cfdcd4aa76a7e28d7b2b6116}\label{class_c_n_n___genome_a60170454cfdcd4aa76a7e28d7b2b6116}} 
+void {\bfseries evaluate\+\_\+images} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&images, const \textbf{ vector}$<$ int $>$ \&batch, \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ \&predictions, int offset)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a77b133e9ce83f80d95c4d6ae6b9fed24}\label{class_c_n_n___genome_a77b133e9ce83f80d95c4d6ae6b9fed24}} 
+void {\bfseries evaluate\+\_\+images} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&images, const \textbf{ vector}$<$ int $>$ \&batch, bool training, float \&total\+\_\+error, int \&correct\+\_\+predictions, bool accumulate\+\_\+test\+\_\+statistics)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ae39e5304bfd879928cda14d21882a92f}\label{class_c_n_n___genome_ae39e5304bfd879928cda14d21882a92f}} 
+void {\bfseries set\+\_\+to\+\_\+best} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_adb365cb89711f1f9eb440c2dbe5bc852}\label{class_c_n_n___genome_adb365cb89711f1f9eb440c2dbe5bc852}} 
+void {\bfseries save\+\_\+to\+\_\+best} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aa312282aefdf1b6e9095d644240f8074}\label{class_c_n_n___genome_aa312282aefdf1b6e9095d644240f8074}} 
+void {\bfseries reset} (bool \+\_\+reset\+\_\+weights)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aeeabfaa18ba2b5035f61f45a5cbb50ea}\label{class_c_n_n___genome_aeeabfaa18ba2b5035f61f45a5cbb50ea}} 
+void {\bfseries initialize} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a6db242fa1537dd87ead1c22f6b26a71f}\label{class_c_n_n___genome_a6db242fa1537dd87ead1c22f6b26a71f}} 
+void {\bfseries check\+\_\+gradients} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&images)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1ac051de433d1d6df4d69fc3b3ae6e46}\label{class_c_n_n___genome_a1ac051de433d1d6df4d69fc3b3ae6e46}} 
+void {\bfseries evaluate\+\_\+large\+\_\+images} (const \mbox{\hyperlink{class_large_images}{Large\+Images}} \&images, \textbf{ string} output\+\_\+directory)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1c7499369dab9cffa6e8d4c8aa386377}\label{class_c_n_n___genome_a1c7499369dab9cffa6e8d4c8aa386377}} 
+void {\bfseries evaluate} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&images, \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ \&predictions)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aa8a981822b6d88f2cf58dc5f0ec5585d}\label{class_c_n_n___genome_aa8a981822b6d88f2cf58dc5f0ec5585d}} 
+void {\bfseries evaluate} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&images, const \textbf{ vector}$<$ long $>$ \&order, float \&total\+\_\+error, int \&correct\+\_\+predictions, bool perform\+\_\+backprop, bool accumulate\+\_\+test\+\_\+statistics)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a5e880e13a74c12700dc52028b457499f}\label{class_c_n_n___genome_a5e880e13a74c12700dc52028b457499f}} 
+void {\bfseries evaluate} (\textbf{ string} progress\+\_\+name, const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&images, float \&total\+\_\+error, int \&correct\+\_\+predictions)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a7eeba6b8378a89f5491f6aa59097f019}\label{class_c_n_n___genome_a7eeba6b8378a89f5491f6aa59097f019}} 
+void {\bfseries stochastic\+\_\+backpropagation} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&training\+\_\+images, int training\+\_\+resize, const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&validation\+\_\+images)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af4889b04c3b364682458a96968158266}\label{class_c_n_n___genome_af4889b04c3b364682458a96968158266}} 
+void {\bfseries stochastic\+\_\+backpropagation} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&training\+\_\+images, const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&validation\+\_\+images)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ae20429bd9698fac4b55cfa37ad7c9f71}\label{class_c_n_n___genome_ae20429bd9698fac4b55cfa37ad7c9f71}} 
+void {\bfseries evaluate\+\_\+test} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&test\+\_\+images)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a85ae5260e1c2ebe171b546662c111835}\label{class_c_n_n___genome_a85ae5260e1c2ebe171b546662c111835}} 
+void {\bfseries set\+\_\+name} (\textbf{ string} \+\_\+name)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a4175bd5c6ff25f8ff21f34f4658f0c23}\label{class_c_n_n___genome_a4175bd5c6ff25f8ff21f34f4658f0c23}} 
+void {\bfseries set\+\_\+output\+\_\+filename} (\textbf{ string} \+\_\+output\+\_\+filename)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a5531e673b134739e49639bdda5e4686b}\label{class_c_n_n___genome_a5531e673b134739e49639bdda5e4686b}} 
+void {\bfseries set\+\_\+checkpoint\+\_\+filename} (\textbf{ string} \+\_\+checkpoint\+\_\+filename)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a3fef9794a3d7807b91fbcc3c9705b13b}\label{class_c_n_n___genome_a3fef9794a3d7807b91fbcc3c9705b13b}} 
+void {\bfseries write} (\textbf{ ostream} \&outfile)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_afa2cc2a83a85aa19f9f8e1cf07cbbb97}\label{class_c_n_n___genome_afa2cc2a83a85aa19f9f8e1cf07cbbb97}} 
+void {\bfseries write\+\_\+to\+\_\+file} (\textbf{ string} filename)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a2b5abc704f704970794545413ff9ceb7}\label{class_c_n_n___genome_a2b5abc704f704970794545413ff9ceb7}} 
+void {\bfseries read} (\textbf{ istream} \&infile)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af7828e7478f94c5dd84e4ceb70d7a1e7}\label{class_c_n_n___genome_af7828e7478f94c5dd84e4ceb70d7a1e7}} 
+void {\bfseries print\+\_\+graphviz} (\textbf{ ostream} \&out) const
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aa9b653c4b4a3f966a94673f4fad6d140}\label{class_c_n_n___genome_aa9b653c4b4a3f966a94673f4fad6d140}} 
+void {\bfseries set\+\_\+generated\+\_\+by} (\textbf{ string} type)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ab824e4f90319ae5645c961ed7a76337d}\label{class_c_n_n___genome_ab824e4f90319ae5645c961ed7a76337d}} 
+int {\bfseries get\+\_\+generated\+\_\+by} (\textbf{ string} type)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ac8dcb67ff2c52197ed45cb02ec50bde0}\label{class_c_n_n___genome_ac8dcb67ff2c52197ed45cb02ec50bde0}} 
+bool {\bfseries is\+\_\+identical} (\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$other, bool testing\+\_\+checkpoint)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a0ca4c4d9016b9ba05e09ebc4cbc5027c}\label{class_c_n_n___genome_a0ca4c4d9016b9ba05e09ebc4cbc5027c}} 
+void {\bfseries get\+\_\+prediction\+\_\+matrix} (const \mbox{\hyperlink{class_multi_images_interface}{Multi\+Images\+Interface}} \&images, int image\+\_\+number, int stride, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ $>$ \&prediction\+\_\+matrix)
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aaffe635334abb8652512a3bb62c7306d}\label{class_c_n_n___genome_aaffe635334abb8652512a3bb62c7306d}} 
+void {\bfseries get\+\_\+expanded\+\_\+prediction\+\_\+matrix} (const \mbox{\hyperlink{class_multi_images_interface}{Multi\+Images\+Interface}} \&images, int image\+\_\+number, int stride, int prediction\+\_\+class, \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ \&extended\+\_\+prediction\+\_\+matrix)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a8ec27ef16f563520749095b1cb31a00e}\label{class_c_n_n___genome_a8ec27ef16f563520749095b1cb31a00e}} 
+\textbf{ string} {\bfseries version\+\_\+str}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ac36f72edddbedbc5b1d21127fba3f198}\label{class_c_n_n___genome_ac36f72edddbedbc5b1d21127fba3f198}} 
+int {\bfseries exact\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a27f577f2161178a174d80f06c04961df}\label{class_c_n_n___genome_a27f577f2161178a174d80f06c04961df}} 
+int {\bfseries genome\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ada5b45d8d524ab587c1d0e54a7b3fc7a}\label{class_c_n_n___genome_ada5b45d8d524ab587c1d0e54a7b3fc7a}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ {\bfseries nodes}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a858ccc25b70c274ef12825c0bf8c97ed}\label{class_c_n_n___genome_a858ccc25b70c274ef12825c0bf8c97ed}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$ $>$ {\bfseries edges}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aedb7d6ec908e1c3c3b026c086e1bf290}\label{class_c_n_n___genome_aedb7d6ec908e1c3c3b026c086e1bf290}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ {\bfseries input\+\_\+nodes}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a0457c013332baf3b29ad27310ce28525}\label{class_c_n_n___genome_a0457c013332baf3b29ad27310ce28525}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ $>$ {\bfseries softmax\+\_\+nodes}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a30cbdec8592617d40fe88e60b3585370}\label{class_c_n_n___genome_a30cbdec8592617d40fe88e60b3585370}} 
+\mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} {\bfseries normal\+\_\+distribution}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a3dff866f114f70a0880bf96670a7955a}\label{class_c_n_n___genome_a3dff866f114f70a0880bf96670a7955a}} 
+\textbf{ minstd\+\_\+rand0} {\bfseries generator}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a71018bde5fd2254c289e62e3965bb5e0}\label{class_c_n_n___genome_a71018bde5fd2254c289e62e3965bb5e0}} 
+int {\bfseries velocity\+\_\+reset}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a74125b4d86b279816108708d9d085c98}\label{class_c_n_n___genome_a74125b4d86b279816108708d9d085c98}} 
+int {\bfseries batch\+\_\+size}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a8f752eafed625bf9624293262628237c}\label{class_c_n_n___genome_a8f752eafed625bf9624293262628237c}} 
+float {\bfseries epsilon}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a5e53cc85b3525115a46ac286d8294264}\label{class_c_n_n___genome_a5e53cc85b3525115a46ac286d8294264}} 
+float {\bfseries alpha}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af326f0f80e61dfa272eebae6e7d206f1}\label{class_c_n_n___genome_af326f0f80e61dfa272eebae6e7d206f1}} 
+float {\bfseries input\+\_\+dropout\+\_\+probability}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a89a70d4c6e9e15d2f759104b4570f5ee}\label{class_c_n_n___genome_a89a70d4c6e9e15d2f759104b4570f5ee}} 
+float {\bfseries hidden\+\_\+dropout\+\_\+probability}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a6273045a2a43be195624434d4711f968}\label{class_c_n_n___genome_a6273045a2a43be195624434d4711f968}} 
+float {\bfseries initial\+\_\+mu}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a09d0057d079d3a813861ee0cd2545f99}\label{class_c_n_n___genome_a09d0057d079d3a813861ee0cd2545f99}} 
+float {\bfseries mu}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a28ef1f9d9c2e42606dee81157810feca}\label{class_c_n_n___genome_a28ef1f9d9c2e42606dee81157810feca}} 
+float {\bfseries mu\+\_\+delta}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ac318f81565dcd73fb11c43253aa76405}\label{class_c_n_n___genome_ac318f81565dcd73fb11c43253aa76405}} 
+float {\bfseries initial\+\_\+learning\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a6ec506b690d93b4ede8fd50443f9c72b}\label{class_c_n_n___genome_a6ec506b690d93b4ede8fd50443f9c72b}} 
+float {\bfseries learning\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aa75e9627afcfc4b57c401c2bdb1fa630}\label{class_c_n_n___genome_aa75e9627afcfc4b57c401c2bdb1fa630}} 
+float {\bfseries learning\+\_\+rate\+\_\+delta}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a2e4aae2e8d305db02e73fb4b43e6183f}\label{class_c_n_n___genome_a2e4aae2e8d305db02e73fb4b43e6183f}} 
+float {\bfseries initial\+\_\+weight\+\_\+decay}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ac5da4d6ba98e776e19ab662bdc891d83}\label{class_c_n_n___genome_ac5da4d6ba98e776e19ab662bdc891d83}} 
+float {\bfseries weight\+\_\+decay}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aa260f75e031ee5fa8bc84bef197dcae8}\label{class_c_n_n___genome_aa260f75e031ee5fa8bc84bef197dcae8}} 
+float {\bfseries weight\+\_\+decay\+\_\+delta}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af309bfba7b9c32d871fae60b710211a6}\label{class_c_n_n___genome_af309bfba7b9c32d871fae60b710211a6}} 
+int {\bfseries epoch}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a29820b7906c794e0911069de6615f8ee}\label{class_c_n_n___genome_a29820b7906c794e0911069de6615f8ee}} 
+int {\bfseries max\+\_\+epochs}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a72b47518f4df7e9543134eefd8d7752b}\label{class_c_n_n___genome_a72b47518f4df7e9543134eefd8d7752b}} 
+bool {\bfseries reset\+\_\+weights}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1ae4b704e9aee01dd99158debbe14dbd}\label{class_c_n_n___genome_a1ae4b704e9aee01dd99158debbe14dbd}} 
+int {\bfseries padding}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ae7681541ee912f598a92f07564f98aba}\label{class_c_n_n___genome_ae7681541ee912f598a92f07564f98aba}} 
+int {\bfseries best\+\_\+epoch}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_abc7ebbed239b6ec0958451b7f2e80c27}\label{class_c_n_n___genome_abc7ebbed239b6ec0958451b7f2e80c27}} 
+int {\bfseries number\+\_\+validation\+\_\+images}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a437d8900924b0fc10becf61c6ce69ba0}\label{class_c_n_n___genome_a437d8900924b0fc10becf61c6ce69ba0}} 
+float {\bfseries best\+\_\+validation\+\_\+error}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ae25e7459934838e21b8d82bcc1945b09}\label{class_c_n_n___genome_ae25e7459934838e21b8d82bcc1945b09}} 
+int {\bfseries best\+\_\+validation\+\_\+predictions}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a7161c7c21005c3f26a6c5595719e1d3b}\label{class_c_n_n___genome_a7161c7c21005c3f26a6c5595719e1d3b}} 
+int {\bfseries number\+\_\+training\+\_\+images}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a0e29c833d8769002b536389a4071b57f}\label{class_c_n_n___genome_a0e29c833d8769002b536389a4071b57f}} 
+float {\bfseries training\+\_\+error}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a447a92e0e3d05fbdbd90f75812a9be29}\label{class_c_n_n___genome_a447a92e0e3d05fbdbd90f75812a9be29}} 
+int {\bfseries training\+\_\+predictions}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a561d2b8ab2680f31678f3de8a8af7c44}\label{class_c_n_n___genome_a561d2b8ab2680f31678f3de8a8af7c44}} 
+int {\bfseries number\+\_\+test\+\_\+images}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_ac6186df452259dbc064d9c57382be559}\label{class_c_n_n___genome_ac6186df452259dbc064d9c57382be559}} 
+float {\bfseries test\+\_\+error}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a7d7dd209af6e2a62a1fa657be347f22c}\label{class_c_n_n___genome_a7d7dd209af6e2a62a1fa657be347f22c}} 
+int {\bfseries test\+\_\+predictions}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_aa4ff950358e4a22dea3e98cbd91ce9ba}\label{class_c_n_n___genome_aa4ff950358e4a22dea3e98cbd91ce9ba}} 
+bool {\bfseries started\+\_\+from\+\_\+checkpoint}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a1a2fa204e78bd5f8f6e50cac857b4d39}\label{class_c_n_n___genome_a1a2fa204e78bd5f8f6e50cac857b4d39}} 
+\textbf{ vector}$<$ long $>$ {\bfseries backprop\+\_\+order}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a90c910d9a927cd22478c1c8085940479}\label{class_c_n_n___genome_a90c910d9a927cd22478c1c8085940479}} 
+int {\bfseries generation\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a275979e3dd5f97a9850572e27cfa78f9}\label{class_c_n_n___genome_a275979e3dd5f97a9850572e27cfa78f9}} 
+\textbf{ string} {\bfseries name}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_add78222f1f20b75bac8588902c541da6}\label{class_c_n_n___genome_add78222f1f20b75bac8588902c541da6}} 
+\textbf{ string} {\bfseries checkpoint\+\_\+filename}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_a9f3c6108b842c628a11ab083df584815}\label{class_c_n_n___genome_a9f3c6108b842c628a11ab083df584815}} 
+\textbf{ string} {\bfseries output\+\_\+filename}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_adf26166816b56a45408a6a271ca686d2}\label{class_c_n_n___genome_adf26166816b56a45408a6a271ca686d2}} 
+\textbf{ map}$<$ \textbf{ string}, int $>$ {\bfseries generated\+\_\+by\+\_\+map}
+\item 
+\mbox{\Hypertarget{class_c_n_n___genome_af767929c34570ff9528f1a12a792fad7}\label{class_c_n_n___genome_af767929c34570ff9528f1a12a792fad7}} 
+int($\ast$ {\bfseries progress\+\_\+function} )(float)
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+cnn/cnn\+\_\+genome.\+hxx\item 
+cnn/cnn\+\_\+genome.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_c_n_n___node.tex b/docs/latex/class_c_n_n___node.tex
new file mode 100644
index 00000000..6e8be1d2
--- /dev/null
+++ b/docs/latex/class_c_n_n___node.tex
@@ -0,0 +1,368 @@
+\hypertarget{class_c_n_n___node}{}\doxysection{C\+N\+N\+\_\+\+Node Class Reference}
+\label{class_c_n_n___node}\index{CNN\_Node@{CNN\_Node}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a7fac811a3a94c72d882a6d32fbcb1331}\label{class_c_n_n___node_a7fac811a3a94c72d882a6d32fbcb1331}} 
+{\bfseries C\+N\+N\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, float \+\_\+depth, int \+\_\+batch\+\_\+size, int \+\_\+input\+\_\+size\+\_\+x, int \+\_\+input\+\_\+size\+\_\+y, int type)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a3ddd61a216467d8291b295df007bed14}\label{class_c_n_n___node_a3ddd61a216467d8291b295df007bed14}} 
+\mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$ {\bfseries copy} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a10ccc5ceee1c8ca77c3f239614f37b89}\label{class_c_n_n___node_a10ccc5ceee1c8ca77c3f239614f37b89}} 
+bool {\bfseries needs\+\_\+init} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a0c7ee6105f2fc7d6772f51af08c3f7f2}\label{class_c_n_n___node_a0c7ee6105f2fc7d6772f51af08c3f7f2}} 
+int {\bfseries get\+\_\+batch\+\_\+size} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ab133cb2d976c9ac2f834b15109e17c76}\label{class_c_n_n___node_ab133cb2d976c9ac2f834b15109e17c76}} 
+int {\bfseries get\+\_\+size\+\_\+x} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a9631d419115cce60208a7f5da8f26458}\label{class_c_n_n___node_a9631d419115cce60208a7f5da8f26458}} 
+int {\bfseries get\+\_\+size\+\_\+y} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a1aa0396fa302785e75e77cd0feb048c1}\label{class_c_n_n___node_a1aa0396fa302785e75e77cd0feb048c1}} 
+bool {\bfseries vectors\+\_\+correct} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a93f322e7b1614a5cb9143c2ba4f23468}\label{class_c_n_n___node_a93f322e7b1614a5cb9143c2ba4f23468}} 
+void {\bfseries initialize} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a7c0d3c9ce3aca0d696d44b6e06e90f78}\label{class_c_n_n___node_a7c0d3c9ce3aca0d696d44b6e06e90f78}} 
+void {\bfseries reset\+\_\+velocities} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a9016ca96dcc2ccaed39cd2c7486e0b5e}\label{class_c_n_n___node_a9016ca96dcc2ccaed39cd2c7486e0b5e}} 
+void {\bfseries reset\+\_\+weight\+\_\+count} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_afdb33fe03f23336cb00b32d8c177e947}\label{class_c_n_n___node_afdb33fe03f23336cb00b32d8c177e947}} 
+void {\bfseries add\+\_\+weight\+\_\+count} (int \+\_\+weight\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ac349298a69de8dd6e1f09f87844c20c7}\label{class_c_n_n___node_ac349298a69de8dd6e1f09f87844c20c7}} 
+int {\bfseries get\+\_\+weight\+\_\+count} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a82c31aa7775b78f3b496144cc6dd014d}\label{class_c_n_n___node_a82c31aa7775b78f3b496144cc6dd014d}} 
+int {\bfseries get\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ab0d3c239cf7da939115b5ad0f3ca932f}\label{class_c_n_n___node_ab0d3c239cf7da939115b5ad0f3ca932f}} 
+float {\bfseries get\+\_\+depth} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a4bee46b025cb107e543d54cf2ad92be2}\label{class_c_n_n___node_a4bee46b025cb107e543d54cf2ad92be2}} 
+bool {\bfseries is\+\_\+fixed} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a50032c817d28ed666d934f252ced849f}\label{class_c_n_n___node_a50032c817d28ed666d934f252ced849f}} 
+bool {\bfseries is\+\_\+hidden} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a26bb78e53b932cdd9a4905a027e278a3}\label{class_c_n_n___node_a26bb78e53b932cdd9a4905a027e278a3}} 
+bool {\bfseries is\+\_\+input} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aa6ffb6ef2242ea80a274bf7f8ab5aa9b}\label{class_c_n_n___node_aa6ffb6ef2242ea80a274bf7f8ab5aa9b}} 
+bool {\bfseries is\+\_\+output} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ac50b24ab52445fecefd3f9323d708714}\label{class_c_n_n___node_ac50b24ab52445fecefd3f9323d708714}} 
+bool {\bfseries is\+\_\+softmax} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aa14b29627546c76ebd175ff8a2ab5cdc}\label{class_c_n_n___node_aa14b29627546c76ebd175ff8a2ab5cdc}} 
+bool {\bfseries is\+\_\+reachable} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a44b7064159403af223b83edb821bba45}\label{class_c_n_n___node_a44b7064159403af223b83edb821bba45}} 
+bool {\bfseries is\+\_\+forward\+\_\+visited} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a4b6df2f1c1198f2e279028ad5b98d502}\label{class_c_n_n___node_a4b6df2f1c1198f2e279028ad5b98d502}} 
+bool {\bfseries is\+\_\+reverse\+\_\+visited} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a0e943c8a1fa356c99b5e62912ca14ffd}\label{class_c_n_n___node_a0e943c8a1fa356c99b5e62912ca14ffd}} 
+void {\bfseries forward\+\_\+visit} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a896c1950897a167716129d6a7d11f20d}\label{class_c_n_n___node_a896c1950897a167716129d6a7d11f20d}} 
+void {\bfseries reverse\+\_\+visit} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a0eb70dfab0003755fc8122c1eb6fca64}\label{class_c_n_n___node_a0eb70dfab0003755fc8122c1eb6fca64}} 
+void {\bfseries set\+\_\+unvisited} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ab7f02bda228d0b621033d3416ce9b37f}\label{class_c_n_n___node_ab7f02bda228d0b621033d3416ce9b37f}} 
+bool {\bfseries has\+\_\+nan} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_addacf3e2055ec68a569fdbcaf2cb9803}\label{class_c_n_n___node_addacf3e2055ec68a569fdbcaf2cb9803}} 
+void {\bfseries set\+\_\+values} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&images, const \textbf{ vector}$<$ int $>$ \&batch, int channel, bool perform\+\_\+dropout, bool accumulate\+\_\+test\+\_\+statistics, float input\+\_\+dropout\+\_\+probability, \textbf{ minstd\+\_\+rand0} \&generator)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_adcf8d2efd9f7beb871bd32aed3c20c7f}\label{class_c_n_n___node_adcf8d2efd9f7beb871bd32aed3c20c7f}} 
+float {\bfseries get\+\_\+value\+\_\+in} (int batch\+\_\+number, int y, int x)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a78f492da74637456031434b81f4763c9}\label{class_c_n_n___node_a78f492da74637456031434b81f4763c9}} 
+void {\bfseries set\+\_\+value\+\_\+in} (int batch\+\_\+number, int y, int x, float value)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aaaa5d54832589fa38dba19785949698e}\label{class_c_n_n___node_aaaa5d54832589fa38dba19785949698e}} 
+float $\ast$ {\bfseries get\+\_\+values\+\_\+in} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a7e55f5caafbf85b61416c538ecd28e16}\label{class_c_n_n___node_a7e55f5caafbf85b61416c538ecd28e16}} 
+float {\bfseries get\+\_\+value\+\_\+out} (int batch\+\_\+number, int y, int x)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a5e9494c537fe15d6f24b8f14fef41caf}\label{class_c_n_n___node_a5e9494c537fe15d6f24b8f14fef41caf}} 
+void {\bfseries set\+\_\+value\+\_\+out} (int batch\+\_\+number, int y, int x, float value)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a7c1dae2f0efc24198d13e5615b4f17d5}\label{class_c_n_n___node_a7c1dae2f0efc24198d13e5615b4f17d5}} 
+float $\ast$ {\bfseries get\+\_\+values\+\_\+out} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a9f8098a04cc00329861336f523164e5c}\label{class_c_n_n___node_a9f8098a04cc00329861336f523164e5c}} 
+void {\bfseries set\+\_\+error\+\_\+in} (int batch\+\_\+number, int y, int x, float error)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aa89763d32219a2ab847401f6d9459c12}\label{class_c_n_n___node_aa89763d32219a2ab847401f6d9459c12}} 
+float $\ast$ {\bfseries get\+\_\+errors\+\_\+in} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a9e1cc30fe980bf7d8680634e12527ba2}\label{class_c_n_n___node_a9e1cc30fe980bf7d8680634e12527ba2}} 
+void {\bfseries set\+\_\+error\+\_\+out} (int batch\+\_\+number, int y, int x, float error)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a5e304d0072441b5e064d352844b589d5}\label{class_c_n_n___node_a5e304d0072441b5e064d352844b589d5}} 
+float $\ast$ {\bfseries get\+\_\+errors\+\_\+out} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a94552e9df3b03247a1ac4acc1f53104b}\label{class_c_n_n___node_a94552e9df3b03247a1ac4acc1f53104b}} 
+float $\ast$ {\bfseries get\+\_\+relu\+\_\+gradients} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a9c148a8bf4c8308159463097dacb546a}\label{class_c_n_n___node_a9c148a8bf4c8308159463097dacb546a}} 
+float $\ast$ {\bfseries get\+\_\+pool\+\_\+gradients} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a5545a477e5cf1c47f918287c0ee8991e}\label{class_c_n_n___node_a5545a477e5cf1c47f918287c0ee8991e}} 
+void {\bfseries print} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_af3ff47519ff3ca15ec77f54fc7bff575}\label{class_c_n_n___node_af3ff47519ff3ca15ec77f54fc7bff575}} 
+void {\bfseries reset\+\_\+times} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a2fc877dfc8daf04f99974a6c0e1681c8}\label{class_c_n_n___node_a2fc877dfc8daf04f99974a6c0e1681c8}} 
+void {\bfseries accumulate\+\_\+times} (float \&total\+\_\+input\+\_\+time, float \&total\+\_\+output\+\_\+time)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a45914da7893271c41437339c44260457}\label{class_c_n_n___node_a45914da7893271c41437339c44260457}} 
+void {\bfseries reset} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ae1a095bae6efd0662fb636bd7af2580d}\label{class_c_n_n___node_ae1a095bae6efd0662fb636bd7af2580d}} 
+void {\bfseries save\+\_\+best\+\_\+weights} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a5df980bded9a293c72d02e51ffd424c3}\label{class_c_n_n___node_a5df980bded9a293c72d02e51ffd424c3}} 
+void {\bfseries set\+\_\+weights\+\_\+to\+\_\+best} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a77a9fe238761e081479de9dcda5bec19}\label{class_c_n_n___node_a77a9fe238761e081479de9dcda5bec19}} 
+void {\bfseries resize\+\_\+arrays} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_acf89a51d610460a9d12fe775f3dadc41}\label{class_c_n_n___node_acf89a51d610460a9d12fe775f3dadc41}} 
+void {\bfseries update\+\_\+batch\+\_\+size} (int new\+\_\+batch\+\_\+size)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a7308e8d3046605cb3f1bbd7fd1e7935f}\label{class_c_n_n___node_a7308e8d3046605cb3f1bbd7fd1e7935f}} 
+bool {\bfseries modify\+\_\+size\+\_\+x} (int change)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ad6541f7c55b7159b1eee403ab4172063}\label{class_c_n_n___node_ad6541f7c55b7159b1eee403ab4172063}} 
+bool {\bfseries modify\+\_\+size\+\_\+y} (int change)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a6bdf7998cffe6ad25b50b6accc14ac92}\label{class_c_n_n___node_a6bdf7998cffe6ad25b50b6accc14ac92}} 
+bool {\bfseries is\+\_\+disabled} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ad9cefd57c67147c84a5a9fbb39b958fd}\label{class_c_n_n___node_ad9cefd57c67147c84a5a9fbb39b958fd}} 
+bool {\bfseries is\+\_\+enabled} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a2026883925174924c1f6ad861e628a48}\label{class_c_n_n___node_a2026883925174924c1f6ad861e628a48}} 
+void {\bfseries disable} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a35a124b721b0f688acfbf9c898796412}\label{class_c_n_n___node_a35a124b721b0f688acfbf9c898796412}} 
+void {\bfseries enable} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a8a502ddc219b178c89979a4380031c4e}\label{class_c_n_n___node_a8a502ddc219b178c89979a4380031c4e}} 
+void {\bfseries add\+\_\+input} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aaa18eee36c34b5876fd0be8eb73c1695}\label{class_c_n_n___node_aaa18eee36c34b5876fd0be8eb73c1695}} 
+void {\bfseries disable\+\_\+input} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aa74369ca703333e20f3749c1a7c7d942}\label{class_c_n_n___node_aa74369ca703333e20f3749c1a7c7d942}} 
+int {\bfseries get\+\_\+number\+\_\+inputs} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a34a6a332fbe96ff58a21234686165ce2}\label{class_c_n_n___node_a34a6a332fbe96ff58a21234686165ce2}} 
+int {\bfseries get\+\_\+inputs\+\_\+fired} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a95f9e09d3b30e92cfb484761834007fe}\label{class_c_n_n___node_a95f9e09d3b30e92cfb484761834007fe}} 
+void {\bfseries input\+\_\+fired} (bool training, bool accumulate\+\_\+test\+\_\+statistics, float epsilon, float alpha, bool perform\+\_\+dropout, float hidden\+\_\+dropout\+\_\+probability, \textbf{ minstd\+\_\+rand0} \&generator)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a82c8a76bcdccdeb744d0d98ac5fcc8f7}\label{class_c_n_n___node_a82c8a76bcdccdeb744d0d98ac5fcc8f7}} 
+void {\bfseries add\+\_\+output} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a874a74001c153eabc0903b1e2cfbc816}\label{class_c_n_n___node_a874a74001c153eabc0903b1e2cfbc816}} 
+void {\bfseries disable\+\_\+output} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ac90c64c548b3fcaaa635e7e70dd28a75}\label{class_c_n_n___node_ac90c64c548b3fcaaa635e7e70dd28a75}} 
+int {\bfseries get\+\_\+number\+\_\+outputs} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a8b3bcb6a8bec755478d124d8eb4d7bcb}\label{class_c_n_n___node_a8b3bcb6a8bec755478d124d8eb4d7bcb}} 
+int {\bfseries get\+\_\+outputs\+\_\+fired} () const
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a73e631513cac0f8386e653d772124ec8}\label{class_c_n_n___node_a73e631513cac0f8386e653d772124ec8}} 
+void {\bfseries output\+\_\+fired} (bool training, float mu, float learning\+\_\+rate, float epsilon)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a416215a5a047d685d20994e6d0514faf}\label{class_c_n_n___node_a416215a5a047d685d20994e6d0514faf}} 
+void {\bfseries zero\+\_\+test\+\_\+statistics} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_af733af754d399ed4d96f7ada035b1fa0}\label{class_c_n_n___node_af733af754d399ed4d96f7ada035b1fa0}} 
+void {\bfseries divide\+\_\+test\+\_\+statistics} (int number\+\_\+batches)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ad51e4f8982a2be914a9621cec7140f17}\label{class_c_n_n___node_ad51e4f8982a2be914a9621cec7140f17}} 
+void {\bfseries print\+\_\+batch\+\_\+statistics} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a7b56c38a2b36b767e360cc06201111e0}\label{class_c_n_n___node_a7b56c38a2b36b767e360cc06201111e0}} 
+void {\bfseries batch\+\_\+normalize} (bool training, bool accumulating\+\_\+test\+\_\+statistics, float epsilon, float alpha)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ada7ad72a17075fb7480896459ea2dec0}\label{class_c_n_n___node_ada7ad72a17075fb7480896459ea2dec0}} 
+void {\bfseries apply\+\_\+relu} (float $\ast$values, float $\ast$gradients)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ac124771e160359ed84d5da7de57e90ed}\label{class_c_n_n___node_ac124771e160359ed84d5da7de57e90ed}} 
+void {\bfseries apply\+\_\+dropout} (float $\ast$values, float $\ast$gradients, bool perform\+\_\+dropout, bool accumulate\+\_\+test\+\_\+statistics, float dropout\+\_\+probability, \textbf{ minstd\+\_\+rand0} \&generator)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aea17b6b82653892fbe35c5f23856c920}\label{class_c_n_n___node_aea17b6b82653892fbe35c5f23856c920}} 
+void {\bfseries backpropagate\+\_\+relu} (float $\ast$errors, float $\ast$gradients)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a6899f13b532e45adf9ed220a29c8e31c}\label{class_c_n_n___node_a6899f13b532e45adf9ed220a29c8e31c}} 
+void {\bfseries backpropagate\+\_\+batch\+\_\+normalization} (bool training, float mu, float learning\+\_\+rate, float epsilon)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a524e825e83aba98b41ae3a74dce5fd35}\label{class_c_n_n___node_a524e825e83aba98b41ae3a74dce5fd35}} 
+void {\bfseries print\+\_\+statistics} ()
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a019d38e2c4af8891732fef5404cba275}\label{class_c_n_n___node_a019d38e2c4af8891732fef5404cba275}} 
+void {\bfseries print\+\_\+statistics} (const float $\ast$values, const float $\ast$errors, const float $\ast$gradients)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ad41d106565981c6b0a71532785cd1cbe}\label{class_c_n_n___node_ad41d106565981c6b0a71532785cd1cbe}} 
+bool {\bfseries is\+\_\+identical} (const \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$other, bool testing\+\_\+checkpoint)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a03966e763ef4accb0e28df17abb892b1}\label{class_c_n_n___node_a03966e763ef4accb0e28df17abb892b1}} 
+int {\bfseries node\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ada66344b8f4741a540e2454a827943e2}\label{class_c_n_n___node_ada66344b8f4741a540e2454a827943e2}} 
+int {\bfseries exact\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ae663ed7191d7a87159cec7cdc9f5d09f}\label{class_c_n_n___node_ae663ed7191d7a87159cec7cdc9f5d09f}} 
+int {\bfseries genome\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_acd634a60f4d480e3a8304dfe4ec1bb3c}\label{class_c_n_n___node_acd634a60f4d480e3a8304dfe4ec1bb3c}} 
+int {\bfseries innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aabba69c0213b99b444f66176b7696053}\label{class_c_n_n___node_aabba69c0213b99b444f66176b7696053}} 
+float {\bfseries depth}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a5cb0c9502b1201c50848aff3f2833bf5}\label{class_c_n_n___node_a5cb0c9502b1201c50848aff3f2833bf5}} 
+int {\bfseries batch\+\_\+size}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_addf9f0af701825e8e9f1c680e34dddcc}\label{class_c_n_n___node_addf9f0af701825e8e9f1c680e34dddcc}} 
+int {\bfseries size\+\_\+y}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_afcdc28ad54efad4bf65d9b371de48ae8}\label{class_c_n_n___node_afcdc28ad54efad4bf65d9b371de48ae8}} 
+int {\bfseries size\+\_\+x}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a14b71944753522d0b129f9f4414b3ef6}\label{class_c_n_n___node_a14b71944753522d0b129f9f4414b3ef6}} 
+int {\bfseries total\+\_\+size}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a7006c7aff1fd01323a29f050fe8e3f55}\label{class_c_n_n___node_a7006c7aff1fd01323a29f050fe8e3f55}} 
+int {\bfseries weight\+\_\+count}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_af12bb6a121f0187dad4bba3eee98b4b1}\label{class_c_n_n___node_af12bb6a121f0187dad4bba3eee98b4b1}} 
+int {\bfseries type}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ab4988c3c511d321cfc62f2df0db4e558}\label{class_c_n_n___node_ab4988c3c511d321cfc62f2df0db4e558}} 
+int {\bfseries total\+\_\+inputs}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_af164ba232f24240d857ce6adc73fa9ac}\label{class_c_n_n___node_af164ba232f24240d857ce6adc73fa9ac}} 
+int {\bfseries inputs\+\_\+fired}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a920df63ffc1999c9b5656118f1ce1d4f}\label{class_c_n_n___node_a920df63ffc1999c9b5656118f1ce1d4f}} 
+int {\bfseries total\+\_\+outputs}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a62be452864b38e8add79da1a6855c6b5}\label{class_c_n_n___node_a62be452864b38e8add79da1a6855c6b5}} 
+int {\bfseries outputs\+\_\+fired}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ae4f2f7364c1299faad66979a708803f7}\label{class_c_n_n___node_ae4f2f7364c1299faad66979a708803f7}} 
+bool {\bfseries forward\+\_\+visited}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ae43eb8c82a5aa1efbcf493b56e782ca3}\label{class_c_n_n___node_ae43eb8c82a5aa1efbcf493b56e782ca3}} 
+bool {\bfseries reverse\+\_\+visited}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a93e5c12387161ad0ae20f9132dc59f70}\label{class_c_n_n___node_a93e5c12387161ad0ae20f9132dc59f70}} 
+bool {\bfseries needs\+\_\+initialization}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a3d1ce55fe8704f7c48befecdf77595d2}\label{class_c_n_n___node_a3d1ce55fe8704f7c48befecdf77595d2}} 
+bool {\bfseries disabled}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a551836af838cafd882e6ebc48d745476}\label{class_c_n_n___node_a551836af838cafd882e6ebc48d745476}} 
+float {\bfseries gamma}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a340aac04a2e9d6e0f3d4298ba361a3e4}\label{class_c_n_n___node_a340aac04a2e9d6e0f3d4298ba361a3e4}} 
+float {\bfseries best\+\_\+gamma}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a0b1c0b1b1ee2747d88a94b55b96ca3d5}\label{class_c_n_n___node_a0b1c0b1b1ee2747d88a94b55b96ca3d5}} 
+float {\bfseries previous\+\_\+velocity\+\_\+gamma}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_add699ffb2c54aca9d5f0864f82a21d67}\label{class_c_n_n___node_add699ffb2c54aca9d5f0864f82a21d67}} 
+float {\bfseries beta}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a08c236f1208b0daadef49828863dd0b4}\label{class_c_n_n___node_a08c236f1208b0daadef49828863dd0b4}} 
+float {\bfseries best\+\_\+beta}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a9aaa89b5aa3cf824d6315d6979706c50}\label{class_c_n_n___node_a9aaa89b5aa3cf824d6315d6979706c50}} 
+float {\bfseries previous\+\_\+velocity\+\_\+beta}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ae0dfab82a1999d1175d0317bea4b85fa}\label{class_c_n_n___node_ae0dfab82a1999d1175d0317bea4b85fa}} 
+float {\bfseries batch\+\_\+mean}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ac512a27a5d17c6466a64deba39609635}\label{class_c_n_n___node_ac512a27a5d17c6466a64deba39609635}} 
+float {\bfseries batch\+\_\+variance}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a53015a2df4ccafa3e9de321bc370f54b}\label{class_c_n_n___node_a53015a2df4ccafa3e9de321bc370f54b}} 
+float {\bfseries batch\+\_\+std\+\_\+dev}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a5918a89bfe2d064fa2bf53c726ff08e4}\label{class_c_n_n___node_a5918a89bfe2d064fa2bf53c726ff08e4}} 
+float {\bfseries inverse\+\_\+variance}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aac811c7ca46293b25bea7b3c200c10b5}\label{class_c_n_n___node_aac811c7ca46293b25bea7b3c200c10b5}} 
+float {\bfseries running\+\_\+mean}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aacf47230fe9a7ec45ce80d69c2bae043}\label{class_c_n_n___node_aacf47230fe9a7ec45ce80d69c2bae043}} 
+float {\bfseries best\+\_\+running\+\_\+mean}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ae833075e2cb7ffb50a3c3b31b3f4481f}\label{class_c_n_n___node_ae833075e2cb7ffb50a3c3b31b3f4481f}} 
+float {\bfseries running\+\_\+variance}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_af7d13376400403b35d47e64feea3c728}\label{class_c_n_n___node_af7d13376400403b35d47e64feea3c728}} 
+float {\bfseries best\+\_\+running\+\_\+variance}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ac3141d4b38090d5af50cfe9390f555a0}\label{class_c_n_n___node_ac3141d4b38090d5af50cfe9390f555a0}} 
+float $\ast$ {\bfseries values\+\_\+out}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a82183f346839f30b7fc125fd30435987}\label{class_c_n_n___node_a82183f346839f30b7fc125fd30435987}} 
+float $\ast$ {\bfseries errors\+\_\+out}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a379c92d540105cb445eac690a8203c89}\label{class_c_n_n___node_a379c92d540105cb445eac690a8203c89}} 
+float $\ast$ {\bfseries relu\+\_\+gradients}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_ac2b84c2825549f9b2a0ccbe608c7b300}\label{class_c_n_n___node_ac2b84c2825549f9b2a0ccbe608c7b300}} 
+float $\ast$ {\bfseries pool\+\_\+gradients}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_acfb7cb01d52549ab277412991dcd862b}\label{class_c_n_n___node_acfb7cb01d52549ab277412991dcd862b}} 
+float $\ast$ {\bfseries values\+\_\+in}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a47b823b6dc8e0ca2cbc5378d12c7bcba}\label{class_c_n_n___node_a47b823b6dc8e0ca2cbc5378d12c7bcba}} 
+float $\ast$ {\bfseries errors\+\_\+in}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a782b427e7bd9ec698412d25380edd59b}\label{class_c_n_n___node_a782b427e7bd9ec698412d25380edd59b}} 
+float {\bfseries input\+\_\+fired\+\_\+time}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a83fc5bf2ac3d28ad3fe624cd7e2760b2}\label{class_c_n_n___node_a83fc5bf2ac3d28ad3fe624cd7e2760b2}} 
+float {\bfseries output\+\_\+fired\+\_\+time}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_aff36aced5b29a9f389582b74da662d49}\label{class_c_n_n___node_aff36aced5b29a9f389582b74da662d49}} 
+\textbf{ ostream} \& {\bfseries operator$<$$<$} (\textbf{ ostream} \&os, const \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$node)
+\item 
+\mbox{\Hypertarget{class_c_n_n___node_a3da48b7b2c40c40a7c9fa64b5b0e630e}\label{class_c_n_n___node_a3da48b7b2c40c40a7c9fa64b5b0e630e}} 
+\textbf{ istream} \& {\bfseries operator$>$$>$} (\textbf{ istream} \&is, \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$node)
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+cnn/cnn\+\_\+node.\+hxx\item 
+cnn/cnn\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_consolidated_statistics.tex b/docs/latex/class_consolidated_statistics.tex
new file mode 100644
index 00000000..6c6d4b4f
--- /dev/null
+++ b/docs/latex/class_consolidated_statistics.tex
@@ -0,0 +1,38 @@
+\hypertarget{class_consolidated_statistics}{}\doxysection{Consolidated\+Statistics Class Reference}
+\label{class_consolidated_statistics}\index{ConsolidatedStatistics@{ConsolidatedStatistics}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_consolidated_statistics_a1dedb8fe0ebec15343eb8cc43dd13919}\label{class_consolidated_statistics_a1dedb8fe0ebec15343eb8cc43dd13919}} 
+{\bfseries Consolidated\+Statistics} (\textbf{ string} \+\_\+run\+\_\+type)
+\item 
+\mbox{\Hypertarget{class_consolidated_statistics_a5f7c3c4a15770ba410ed702502a69e14}\label{class_consolidated_statistics_a5f7c3c4a15770ba410ed702502a69e14}} 
+\textbf{ string} {\bfseries to\+\_\+string\+\_\+min} ()
+\item 
+\mbox{\Hypertarget{class_consolidated_statistics_a516c9b01f648ebc06ec77e77dbbc92ba}\label{class_consolidated_statistics_a516c9b01f648ebc06ec77e77dbbc92ba}} 
+\textbf{ string} {\bfseries to\+\_\+string\+\_\+avg} ()
+\item 
+\mbox{\Hypertarget{class_consolidated_statistics_a712f35c52e6099b119aac3c9be392792}\label{class_consolidated_statistics_a712f35c52e6099b119aac3c9be392792}} 
+\textbf{ string} {\bfseries to\+\_\+string\+\_\+max} ()
+\end{DoxyCompactItemize}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_consolidated_statistics_a440db85e7e7056589c3b337d1a480e75}\label{class_consolidated_statistics_a440db85e7e7056589c3b337d1a480e75}} 
+\textbf{ string} {\bfseries run\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_consolidated_statistics_a4e279cbf435a754e54ca6a670f5050f3}\label{class_consolidated_statistics_a4e279cbf435a754e54ca6a670f5050f3}} 
+double {\bfseries dfm\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_consolidated_statistics_a389b132b9af4877b5895befaecc0808a}\label{class_consolidated_statistics_a389b132b9af4877b5895befaecc0808a}} 
+double {\bfseries dfm\+\_\+avg}
+\item 
+\mbox{\Hypertarget{class_consolidated_statistics_a602d1d945c8ddf957c7b58146a39bb4b}\label{class_consolidated_statistics_a602d1d945c8ddf957c7b58146a39bb4b}} 
+double {\bfseries dfm\+\_\+max}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\item 
+mpi/run\+\_\+statistics.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_corpus.tex b/docs/latex/class_corpus.tex
new file mode 100644
index 00000000..785887f8
--- /dev/null
+++ b/docs/latex/class_corpus.tex
@@ -0,0 +1,243 @@
+\hypertarget{class_corpus}{}\doxysection{Corpus Class Reference}
+\label{class_corpus}\index{Corpus@{Corpus}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_corpus_a23d832cf3a12a9ee603a1f53bb038154}\label{class_corpus_a23d832cf3a12a9ee603a1f53bb038154}} 
+void {\bfseries normalize\+\_\+min\+\_\+max} ()
+\item 
+\mbox{\Hypertarget{class_corpus_a8a64fb7be666c2b8405042d8969da4ad}\label{class_corpus_a8a64fb7be666c2b8405042d8969da4ad}} 
+void {\bfseries normalize\+\_\+min\+\_\+max} (const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+mins, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+maxs)
+\item 
+\mbox{\Hypertarget{class_corpus_a26fbbb6a85a20a132739fc4ac716e918}\label{class_corpus_a26fbbb6a85a20a132739fc4ac716e918}} 
+void {\bfseries normalize\+\_\+avg\+\_\+std\+\_\+dev} ()
+\item 
+\mbox{\Hypertarget{class_corpus_a0e0f6f33a28ee2aa0df884dfa449694b}\label{class_corpus_a0e0f6f33a28ee2aa0df884dfa449694b}} 
+void {\bfseries normalize\+\_\+avg\+\_\+std\+\_\+dev} (const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+avgs, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+std\+\_\+devs, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+mins, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+maxs)
+\item 
+void \mbox{\hyperlink{class_corpus_a45ee2e625bab4930a20b8448d0e168b0}{write\+\_\+sentence\+\_\+series\+\_\+sets}} (\textbf{ string} base\+\_\+filename)
+\begin{DoxyCompactList}\small\item\em Generates the csv data file. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_corpus_ab48e664f5d9a26ccfaa4c7cdae4bd6c5}\label{class_corpus_ab48e664f5d9a26ccfaa4c7cdae4bd6c5}} 
+void {\bfseries export\+\_\+sent\+\_\+series} (const \textbf{ vector}$<$ int $>$ \&series\+\_\+indexes, int word\+\_\+offset, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\item 
+void \mbox{\hyperlink{class_corpus_a241439045ad1a83d6104b4350961e1b3}{export\+\_\+training\+\_\+series}} (int word\+\_\+offset, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\begin{DoxyCompactList}\small\item\em Exports \mbox{\hyperlink{class_corpus}{Corpus}} Dataset to be used for training in \mbox{\hyperlink{class_r_n_n}{R\+NN}} genome. \end{DoxyCompactList}\item 
+void \mbox{\hyperlink{class_corpus_a1559311071b5de22e15561a39225ec12}{export\+\_\+test\+\_\+series}} (int word\+\_\+offset, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\begin{DoxyCompactList}\small\item\em Exports \mbox{\hyperlink{class_corpus}{Corpus}} Dataset to be used for testing in \mbox{\hyperlink{class_r_n_n}{R\+NN}} genome. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_corpus_a7ef4daa0e73036729c3a9663d1bc519e}\label{class_corpus_a7ef4daa0e73036729c3a9663d1bc519e}} 
+void {\bfseries export\+\_\+series\+\_\+by\+\_\+name} (\textbf{ string} field\+\_\+name, \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&exported\+\_\+series)
+\item 
+\mbox{\Hypertarget{class_corpus_a7fed4b5ae39cc83fea053d77e90ea277}\label{class_corpus_a7fed4b5ae39cc83fea053d77e90ea277}} 
+double {\bfseries denormalize} (\textbf{ string} field\+\_\+name, double value)
+\item 
+\mbox{\Hypertarget{class_corpus_a8e15b1120aee21462550b7d20c90d9d3}\label{class_corpus_a8e15b1120aee21462550b7d20c90d9d3}} 
+\textbf{ string} {\bfseries get\+\_\+normalize\+\_\+type} () const
+\item 
+\mbox{\Hypertarget{class_corpus_a50481b3ece46954b7f82ee2ec8332c8d}\label{class_corpus_a50481b3ece46954b7f82ee2ec8332c8d}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+mins} () const
+\item 
+\mbox{\Hypertarget{class_corpus_a00d42e7ff99d2ae4f5bd20efb9050dc6}\label{class_corpus_a00d42e7ff99d2ae4f5bd20efb9050dc6}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+maxs} () const
+\item 
+\mbox{\Hypertarget{class_corpus_a6db7e7bf9035bf0a37663a67b09576b8}\label{class_corpus_a6db7e7bf9035bf0a37663a67b09576b8}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+avgs} () const
+\item 
+\mbox{\Hypertarget{class_corpus_a3c45272a3f18d0eae2de38cd856d7bf1}\label{class_corpus_a3c45272a3f18d0eae2de38cd856d7bf1}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+std\+\_\+devs} () const
+\item 
+\mbox{\Hypertarget{class_corpus_a409ed06f61136525286e544102041ed9}\label{class_corpus_a409ed06f61136525286e544102041ed9}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries get\+\_\+input\+\_\+parameter\+\_\+names} () const
+\item 
+\mbox{\Hypertarget{class_corpus_a16bb6db54fb5a33906c93390fa225355}\label{class_corpus_a16bb6db54fb5a33906c93390fa225355}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries get\+\_\+output\+\_\+parameter\+\_\+names} () const
+\item 
+\mbox{\Hypertarget{class_corpus_addfbd62c925c543856502c9e026f33f2}\label{class_corpus_addfbd62c925c543856502c9e026f33f2}} 
+int {\bfseries get\+\_\+number\+\_\+series} () const
+\item 
+\mbox{\Hypertarget{class_corpus_a000a739a06e012f98d8ac7128c75f2eb}\label{class_corpus_a000a739a06e012f98d8ac7128c75f2eb}} 
+int {\bfseries get\+\_\+number\+\_\+inputs} () const
+\item 
+\mbox{\Hypertarget{class_corpus_a8a81ce0bea175ce0dea77e85eafeb12b}\label{class_corpus_a8a81ce0bea175ce0dea77e85eafeb12b}} 
+int {\bfseries get\+\_\+number\+\_\+outputs} () const
+\item 
+\mbox{\Hypertarget{class_corpus_a8fa96a8aa8dee4d4c5de9e2d67130e23}\label{class_corpus_a8fa96a8aa8dee4d4c5de9e2d67130e23}} 
+void {\bfseries set\+\_\+training\+\_\+indexes} (const \textbf{ vector}$<$ int $>$ \&\+\_\+training\+\_\+indexes)
+\item 
+\mbox{\Hypertarget{class_corpus_a8f69c56c30fbc39495911946c6323c7e}\label{class_corpus_a8f69c56c30fbc39495911946c6323c7e}} 
+void {\bfseries set\+\_\+test\+\_\+indexes} (const \textbf{ vector}$<$ int $>$ \&\+\_\+test\+\_\+indexes)
+\item 
+\mbox{\Hypertarget{class_corpus_a9f476c6ad48e92bb80531d314115377f}\label{class_corpus_a9f476c6ad48e92bb80531d314115377f}} 
+\mbox{\hyperlink{class_sentence_series}{Sentence\+Series}} $\ast$ {\bfseries get\+\_\+set} (\textbf{ int32\+\_\+t} i)
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_corpus_aacb92512dd5c353c1085f9dcd303d440}\label{class_corpus_aacb92512dd5c353c1085f9dcd303d440}} 
+static \mbox{\hyperlink{class_corpus}{Corpus}} $\ast$ {\bfseries generate\+\_\+from\+\_\+arguments} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&arguments)
+\item 
+\mbox{\Hypertarget{class_corpus_a184bd2800418e018f0650a9f59fbc4cb}\label{class_corpus_a184bd2800418e018f0650a9f59fbc4cb}} 
+static \mbox{\hyperlink{class_corpus}{Corpus}} $\ast$ {\bfseries generate\+\_\+test} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+test\+\_\+filenames, const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+output\+\_\+parameter\+\_\+names)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_corpus_aef1a06e5a764a0ffa2ecc8b4df042692}\label{class_corpus_aef1a06e5a764a0ffa2ecc8b4df042692}} 
+void \mbox{\hyperlink{class_corpus_aef1a06e5a764a0ffa2ecc8b4df042692}{load\+\_\+word\+\_\+library}} ()
+\begin{DoxyCompactList}\small\item\em Loads the filenames, word index and the vocabulary of the files. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_corpus_aaf5714da66d6475437fdae9fe262bb6a}\label{class_corpus_aaf5714da66d6475437fdae9fe262bb6a}} 
+uint32\+\_\+t \mbox{\hyperlink{class_corpus_aaf5714da66d6475437fdae9fe262bb6a}{batch\+\_\+size}}
+\begin{DoxyCompactList}\small\item\em Specifices the batches in which the dataset is to be divided into chunks. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_corpus_a8f5019313c7f0e7067755f79df4dcbe5}\label{class_corpus_a8f5019313c7f0e7067755f79df4dcbe5}} 
+\textbf{ string} {\bfseries normalize\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_corpus_acdc26dc71f4664b914bc6f4ddd08f5c7}\label{class_corpus_acdc26dc71f4664b914bc6f4ddd08f5c7}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ \mbox{\hyperlink{class_corpus_acdc26dc71f4664b914bc6f4ddd08f5c7}{filenames}}
+\begin{DoxyCompactList}\small\item\em Stores all the filenames including training and testing. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_corpus_acc4af3ddc788396aede04a140e15f8b6}\label{class_corpus_acc4af3ddc788396aede04a140e15f8b6}} 
+\textbf{ vector}$<$ int $>$ \mbox{\hyperlink{class_corpus_acc4af3ddc788396aede04a140e15f8b6}{training\+\_\+indexes}}
+\begin{DoxyCompactList}\small\item\em stores the training index of the filenames. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_corpus_a5bfd2fe992d2f34b735b21196b9bd18b}\label{class_corpus_a5bfd2fe992d2f34b735b21196b9bd18b}} 
+\textbf{ vector}$<$ int $>$ \mbox{\hyperlink{class_corpus_a5bfd2fe992d2f34b735b21196b9bd18b}{test\+\_\+indexes}}
+\begin{DoxyCompactList}\small\item\em stores the testing index of the filenames. \end{DoxyCompactList}\item 
+\textbf{ vector}$<$ \textbf{ string} $>$ \mbox{\hyperlink{class_corpus_a21a1934fd5493a82fc572226639525c6}{input\+\_\+parameter\+\_\+names}}
+\begin{DoxyCompactList}\small\item\em stores the input parameter names of the filenames. \end{DoxyCompactList}\item 
+\textbf{ vector}$<$ \textbf{ string} $>$ \mbox{\hyperlink{class_corpus_ac7b85b5b0a376016c63b58200aa03e19}{output\+\_\+parameter\+\_\+names}}
+\begin{DoxyCompactList}\small\item\em stores the input parameter names of the filenames. \end{DoxyCompactList}\item 
+\textbf{ vector}$<$ \textbf{ string} $>$ \mbox{\hyperlink{class_corpus_a084591c7f27b8ad55bc68266fe461161}{all\+\_\+parameter\+\_\+names}}
+\begin{DoxyCompactList}\small\item\em stores the input parameter names of the filenames. \end{DoxyCompactList}\item 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_sentence_series}{Sentence\+Series}} $\ast$ $>$ \mbox{\hyperlink{class_corpus_a96d8a8ed499eb739f08d8d7536008688}{sent\+\_\+series}}
+\begin{DoxyCompactList}\small\item\em stores the Sentence series used in the filenames. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_corpus_a0a851ff0d48771c3b6f2573d7476966a}\label{class_corpus_a0a851ff0d48771c3b6f2573d7476966a}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+mins}
+\item 
+\mbox{\Hypertarget{class_corpus_a22f825861bbb3139717013a6301e3add}\label{class_corpus_a22f825861bbb3139717013a6301e3add}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+maxs}
+\item 
+\mbox{\Hypertarget{class_corpus_a2344bdd0b80ef4fdb30c2f67ef1a1ea0}\label{class_corpus_a2344bdd0b80ef4fdb30c2f67ef1a1ea0}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+avgs}
+\item 
+\mbox{\Hypertarget{class_corpus_aaaee4f6927310905cf812db4fc2e268a}\label{class_corpus_aaaee4f6927310905cf812db4fc2e268a}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+std\+\_\+devs}
+\item 
+\mbox{\Hypertarget{class_corpus_ad420d9f3cecbc7ea4af0ff68a37e386d}\label{class_corpus_ad420d9f3cecbc7ea4af0ff68a37e386d}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ \mbox{\hyperlink{class_corpus_ad420d9f3cecbc7ea4af0ff68a37e386d}{word\+\_\+index}}
+\begin{DoxyCompactList}\small\item\em Maps the index to word string of the word series in a particular filename. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_corpus_a7c44a0b8ab422b3fbe30e165e6f1bd34}\label{class_corpus_a7c44a0b8ab422b3fbe30e165e6f1bd34}} 
+\textbf{ map}$<$ \textbf{ string}, int $>$ \mbox{\hyperlink{class_corpus_a7c44a0b8ab422b3fbe30e165e6f1bd34}{vocab}}
+\begin{DoxyCompactList}\small\item\em Maps the word string to the word series in a particular filename. \end{DoxyCompactList}\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_corpus_a1559311071b5de22e15561a39225ec12}\label{class_corpus_a1559311071b5de22e15561a39225ec12}} 
+\index{Corpus@{Corpus}!export\_test\_series@{export\_test\_series}}
+\index{export\_test\_series@{export\_test\_series}!Corpus@{Corpus}}
+\doxysubsubsection{\texorpdfstring{export\_test\_series()}{export\_test\_series()}}
+{\footnotesize\ttfamily void Corpus\+::export\+\_\+test\+\_\+series (\begin{DoxyParamCaption}\item[{int}]{word\+\_\+offset,  }\item[{\textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&}]{inputs,  }\item[{\textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&}]{outputs }\end{DoxyParamCaption})}
+
+
+
+Exports \mbox{\hyperlink{class_corpus}{Corpus}} Dataset to be used for testing in \mbox{\hyperlink{class_r_n_n}{R\+NN}} genome. 
+
+This exports the time series marked as test series by the test\+\_\+indexes vector.
+
+
+\begin{DoxyParams}{Parameters}
+{\em series\+\_\+indexes} & are the indexes of the input parameters to be used in the dataset \\
+\hline
+{\em word\+\_\+offset} & is used to predict the after how many words, the predictions to be done in the future. \\
+\hline
+{\em inputs} & is the data used for testing in the \mbox{\hyperlink{class_r_n_n}{R\+NN}} genome \\
+\hline
+{\em outpus} & is the data used for testing in the \mbox{\hyperlink{class_r_n_n}{R\+NN}} genome \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_corpus_a241439045ad1a83d6104b4350961e1b3}\label{class_corpus_a241439045ad1a83d6104b4350961e1b3}} 
+\index{Corpus@{Corpus}!export\_training\_series@{export\_training\_series}}
+\index{export\_training\_series@{export\_training\_series}!Corpus@{Corpus}}
+\doxysubsubsection{\texorpdfstring{export\_training\_series()}{export\_training\_series()}}
+{\footnotesize\ttfamily void Corpus\+::export\+\_\+training\+\_\+series (\begin{DoxyParamCaption}\item[{int}]{word\+\_\+offset,  }\item[{\textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&}]{inputs,  }\item[{\textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&}]{outputs }\end{DoxyParamCaption})}
+
+
+
+Exports \mbox{\hyperlink{class_corpus}{Corpus}} Dataset to be used for training in \mbox{\hyperlink{class_r_n_n}{R\+NN}} genome. 
+
+This exports the time series marked as training series by the training\+\_\+indexes vector.
+
+
+\begin{DoxyParams}{Parameters}
+{\em series\+\_\+indexes} & are the indexes of the input parameters to be used in the dataset \\
+\hline
+{\em word\+\_\+offset} & is used to predict the after how many words, the predictions to be done in the future. \\
+\hline
+{\em inputs} & is the data used for training in the \mbox{\hyperlink{class_r_n_n}{R\+NN}} genome \\
+\hline
+{\em outpus} & is the data used for training in the \mbox{\hyperlink{class_r_n_n}{R\+NN}} genome \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_corpus_a45ee2e625bab4930a20b8448d0e168b0}\label{class_corpus_a45ee2e625bab4930a20b8448d0e168b0}} 
+\index{Corpus@{Corpus}!write\_sentence\_series\_sets@{write\_sentence\_series\_sets}}
+\index{write\_sentence\_series\_sets@{write\_sentence\_series\_sets}!Corpus@{Corpus}}
+\doxysubsubsection{\texorpdfstring{write\_sentence\_series\_sets()}{write\_sentence\_series\_sets()}}
+{\footnotesize\ttfamily void Corpus\+::write\+\_\+sentence\+\_\+series\+\_\+sets (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{base\+\_\+filename }\end{DoxyParamCaption})}
+
+
+
+Generates the csv data file. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em base\+\_\+filename} & is the filename to be used. \\
+\hline
+\end{DoxyParams}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_corpus_a084591c7f27b8ad55bc68266fe461161}\label{class_corpus_a084591c7f27b8ad55bc68266fe461161}} 
+\index{Corpus@{Corpus}!all\_parameter\_names@{all\_parameter\_names}}
+\index{all\_parameter\_names@{all\_parameter\_names}!Corpus@{Corpus}}
+\doxysubsubsection{\texorpdfstring{all\_parameter\_names}{all\_parameter\_names}}
+{\footnotesize\ttfamily \textbf{ vector}$<$\textbf{ string}$>$ Corpus\+::all\+\_\+parameter\+\_\+names\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+stores the input parameter names of the filenames. 
+
+stores the unique words used in the filenames. \mbox{\Hypertarget{class_corpus_a21a1934fd5493a82fc572226639525c6}\label{class_corpus_a21a1934fd5493a82fc572226639525c6}} 
+\index{Corpus@{Corpus}!input\_parameter\_names@{input\_parameter\_names}}
+\index{input\_parameter\_names@{input\_parameter\_names}!Corpus@{Corpus}}
+\doxysubsubsection{\texorpdfstring{input\_parameter\_names}{input\_parameter\_names}}
+{\footnotesize\ttfamily \textbf{ vector}$<$\textbf{ string}$>$ Corpus\+::input\+\_\+parameter\+\_\+names\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+stores the input parameter names of the filenames. 
+
+stores the unique words used in the filenames. \mbox{\Hypertarget{class_corpus_ac7b85b5b0a376016c63b58200aa03e19}\label{class_corpus_ac7b85b5b0a376016c63b58200aa03e19}} 
+\index{Corpus@{Corpus}!output\_parameter\_names@{output\_parameter\_names}}
+\index{output\_parameter\_names@{output\_parameter\_names}!Corpus@{Corpus}}
+\doxysubsubsection{\texorpdfstring{output\_parameter\_names}{output\_parameter\_names}}
+{\footnotesize\ttfamily \textbf{ vector}$<$\textbf{ string}$>$ Corpus\+::output\+\_\+parameter\+\_\+names\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+stores the input parameter names of the filenames. 
+
+stores the unique words used in the filenames. \mbox{\Hypertarget{class_corpus_a96d8a8ed499eb739f08d8d7536008688}\label{class_corpus_a96d8a8ed499eb739f08d8d7536008688}} 
+\index{Corpus@{Corpus}!sent\_series@{sent\_series}}
+\index{sent\_series@{sent\_series}!Corpus@{Corpus}}
+\doxysubsubsection{\texorpdfstring{sent\_series}{sent\_series}}
+{\footnotesize\ttfamily \textbf{ vector}$<$\mbox{\hyperlink{class_sentence_series}{Sentence\+Series}}$\ast$$>$ Corpus\+::sent\+\_\+series\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+stores the Sentence series used in the filenames. 
+
+Each file is divided into sentences and word series is made for each word in the sentence. 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+word\+\_\+series/word\+\_\+series.\+hxx\item 
+word\+\_\+series/word\+\_\+series.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_delta___node.eps b/docs/latex/class_delta___node.eps
new file mode 100644
index 00000000..a04cbe59
--- /dev/null
+++ b/docs/latex/class_delta___node.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
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+{
+  newpath
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+  1 eq { x y disty 2 div add arrow } if
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+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
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+(RNN_Node_Interface) cw
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+  boxwidth cols mul distx cols 1 sub mul add
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+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (Delta_Node) 0.000000 0.000000 box
+ (RNN_Node_Interface) 0.000000 1.000000 box
+
+% ----- relations -----
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diff --git a/docs/latex/class_delta___node.tex b/docs/latex/class_delta___node.tex
new file mode 100644
index 00000000..86d6ad1c
--- /dev/null
+++ b/docs/latex/class_delta___node.tex
@@ -0,0 +1,141 @@
+\hypertarget{class_delta___node}{}\doxysection{Delta\+\_\+\+Node Class Reference}
+\label{class_delta___node}\index{Delta\_Node@{Delta\_Node}}
+Inheritance diagram for Delta\+\_\+\+Node\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_delta___node}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_delta___node_aa0fcdcc9a14cb0421adbee632e4dec25}\label{class_delta___node_aa0fcdcc9a14cb0421adbee632e4dec25}} 
+{\bfseries Delta\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+type, double \+\_\+depth)
+\item 
+\mbox{\Hypertarget{class_delta___node_a0d934b77b614f4dfbfe12b63ec5a5067}\label{class_delta___node_a0d934b77b614f4dfbfe12b63ec5a5067}} 
+void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)
+\item 
+\mbox{\Hypertarget{class_delta___node_a3b3f80bf04c45ef87dcf132373ba43e1}\label{class_delta___node_a3b3f80bf04c45ef87dcf132373ba43e1}} 
+void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng1\+\_\+1, double range)
+\item 
+\mbox{\Hypertarget{class_delta___node_aee39237727e94cafd8493ba22177b8ce}\label{class_delta___node_aee39237727e94cafd8493ba22177b8ce}} 
+void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)
+\item 
+\mbox{\Hypertarget{class_delta___node_a44468c970dcf768d94edbb4a3cf733c7}\label{class_delta___node_a44468c970dcf768d94edbb4a3cf733c7}} 
+void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)
+\item 
+\mbox{\Hypertarget{class_delta___node_a1c773f7244ab4caef2a90f5d7eb25693}\label{class_delta___node_a1c773f7244ab4caef2a90f5d7eb25693}} 
+double {\bfseries get\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_delta___node_a5c16896fd4d85f4dacef7ea683122e13}\label{class_delta___node_a5c16896fd4d85f4dacef7ea683122e13}} 
+void {\bfseries print\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_delta___node_aa93bdebc5a026df31e2bdb998e54bf24}\label{class_delta___node_aa93bdebc5a026df31e2bdb998e54bf24}} 
+void {\bfseries input\+\_\+fired} (int time, double incoming\+\_\+output)
+\item 
+\mbox{\Hypertarget{class_delta___node_a56c5c2819b4ec112ff72ab513708f3d1}\label{class_delta___node_a56c5c2819b4ec112ff72ab513708f3d1}} 
+void {\bfseries try\+\_\+update\+\_\+deltas} (int time)
+\item 
+\mbox{\Hypertarget{class_delta___node_a8341222206c2f7afb9f6ecbdcaabfd56}\label{class_delta___node_a8341222206c2f7afb9f6ecbdcaabfd56}} 
+void {\bfseries error\+\_\+fired} (int time, double error)
+\item 
+\mbox{\Hypertarget{class_delta___node_a5c657c18dc893f128a0d0973f3581a9d}\label{class_delta___node_a5c657c18dc893f128a0d0973f3581a9d}} 
+void {\bfseries output\+\_\+fired} (int time, double delta)
+\item 
+\mbox{\Hypertarget{class_delta___node_a9dc4bfdc50658ded929366dd72b4b4f2}\label{class_delta___node_a9dc4bfdc50658ded929366dd72b4b4f2}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_delta___node_a0e0f1e30946b944c0b4da7a49b2cf455}\label{class_delta___node_a0e0f1e30946b944c0b4da7a49b2cf455}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_delta___node_a0b0c2519dbf1925df8ef239a6b230657}\label{class_delta___node_a0b0c2519dbf1925df8ef239a6b230657}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_delta___node_a509ced64e050351dfdb37aa057d1e309}\label{class_delta___node_a509ced64e050351dfdb37aa057d1e309}} 
+void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_delta___node_a6388a73c384be47213f94d46c11ad892}\label{class_delta___node_a6388a73c384be47213f94d46c11ad892}} 
+void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_delta___node_a5f93718f152572499cafcf8043f88c29}\label{class_delta___node_a5f93718f152572499cafcf8043f88c29}} 
+void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)
+\item 
+\mbox{\Hypertarget{class_delta___node_a228974d714f74f6a12cdebed9fd96402}\label{class_delta___node_a228974d714f74f6a12cdebed9fd96402}} 
+void {\bfseries reset} (int \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_delta___node_aa838c07af65ed777140b8007ed3bd990}\label{class_delta___node_aa838c07af65ed777140b8007ed3bd990}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_delta___node_a754bbc40dbf0ed2d0a52b93462c0c0db}\label{class_delta___node_a754bbc40dbf0ed2d0a52b93462c0c0db}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_delta___node_a5842bb9b8001147b9d36784e807c1d92}\label{class_delta___node_a5842bb9b8001147b9d36784e807c1d92}} 
+double {\bfseries alpha}
+\item 
+\mbox{\Hypertarget{class_delta___node_a1405949e85ccf1b26e04499f6530ce55}\label{class_delta___node_a1405949e85ccf1b26e04499f6530ce55}} 
+double {\bfseries beta1}
+\item 
+\mbox{\Hypertarget{class_delta___node_a410a1dd48fd0ec5089a1039e13c7094c}\label{class_delta___node_a410a1dd48fd0ec5089a1039e13c7094c}} 
+double {\bfseries beta2}
+\item 
+\mbox{\Hypertarget{class_delta___node_a318f793688014482aa71ee2ff68cf065}\label{class_delta___node_a318f793688014482aa71ee2ff68cf065}} 
+double {\bfseries v}
+\item 
+\mbox{\Hypertarget{class_delta___node_a4049be4eabb520530bad332836de56a6}\label{class_delta___node_a4049be4eabb520530bad332836de56a6}} 
+double {\bfseries r\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_delta___node_aa4e6f60695de0b62e6362c7d75ceb9a1}\label{class_delta___node_aa4e6f60695de0b62e6362c7d75ceb9a1}} 
+double {\bfseries z\+\_\+hat\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_delta___node_aaf72317f7dfca900c43fb70d4d575db5}\label{class_delta___node_aaf72317f7dfca900c43fb70d4d575db5}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+alpha}
+\item 
+\mbox{\Hypertarget{class_delta___node_a5583496ebae8e9f5b0e2bc3cffb8ea42}\label{class_delta___node_a5583496ebae8e9f5b0e2bc3cffb8ea42}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+beta1}
+\item 
+\mbox{\Hypertarget{class_delta___node_a163a331bc078e46c4310e36955089c06}\label{class_delta___node_a163a331bc078e46c4310e36955089c06}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+beta2}
+\item 
+\mbox{\Hypertarget{class_delta___node_a48faf376a9867e62578cf1ebed71d8f3}\label{class_delta___node_a48faf376a9867e62578cf1ebed71d8f3}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+v}
+\item 
+\mbox{\Hypertarget{class_delta___node_a5eddbf64caf53ee8fd088dfba312da03}\label{class_delta___node_a5eddbf64caf53ee8fd088dfba312da03}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+r\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_delta___node_a1b885a11d3f0368426c9fb00671501c7}\label{class_delta___node_a1b885a11d3f0368426c9fb00671501c7}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+z\+\_\+hat\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_delta___node_a1ea15f5c27f1091abac67e8be3920682}\label{class_delta___node_a1ea15f5c27f1091abac67e8be3920682}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+z\+\_\+prev}
+\item 
+\mbox{\Hypertarget{class_delta___node_a1d0143851eb38c33a0a9299d31afa68d}\label{class_delta___node_a1d0143851eb38c33a0a9299d31afa68d}} 
+\textbf{ vector}$<$ double $>$ {\bfseries r}
+\item 
+\mbox{\Hypertarget{class_delta___node_aca83b5fd3da670c25633948c266a3605}\label{class_delta___node_aca83b5fd3da670c25633948c266a3605}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+r}
+\item 
+\mbox{\Hypertarget{class_delta___node_a7a17d2655139a227504a9c86d565a98b}\label{class_delta___node_a7a17d2655139a227504a9c86d565a98b}} 
+\textbf{ vector}$<$ double $>$ {\bfseries z\+\_\+cap}
+\item 
+\mbox{\Hypertarget{class_delta___node_a6ba1981953ad1474be72ab354deb5521}\label{class_delta___node_a6ba1981953ad1474be72ab354deb5521}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+z\+\_\+cap}
+\item 
+\mbox{\Hypertarget{class_delta___node_a3892cbf24ceb16b9acd21128d242c7f6}\label{class_delta___node_a3892cbf24ceb16b9acd21128d242c7f6}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+z}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_delta___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_delta___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\end{DoxyCompactItemize}
+\doxysubsection*{Additional Inherited Members}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/delta\+\_\+node.\+hxx\item 
+rnn/delta\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_e_n_a_r_c___node.eps b/docs/latex/class_e_n_a_r_c___node.eps
new file mode 100644
index 00000000..c40505a1
--- /dev/null
+++ b/docs/latex/class_e_n_a_r_c___node.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
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+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
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+  moveto
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+  3 8 rlineto
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+{
+  newpath
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+  xs xspacing mul xoffset add boxwidth 2 div add
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+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(ENARC_Node) cw
+(RNN_Node_Interface) cw
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+/xspacing boxwidth distx add def
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+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
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+% ----- classes -----
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+ (ENARC_Node) 0.000000 0.000000 box
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diff --git a/docs/latex/class_e_n_a_r_c___node.tex b/docs/latex/class_e_n_a_r_c___node.tex
new file mode 100644
index 00000000..c58eb740
--- /dev/null
+++ b/docs/latex/class_e_n_a_r_c___node.tex
@@ -0,0 +1,204 @@
+\hypertarget{class_e_n_a_r_c___node}{}\doxysection{E\+N\+A\+R\+C\+\_\+\+Node Class Reference}
+\label{class_e_n_a_r_c___node}\index{ENARC\_Node@{ENARC\_Node}}
+Inheritance diagram for E\+N\+A\+R\+C\+\_\+\+Node\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_e_n_a_r_c___node}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_aec22bfe3168aff3c1dda2597cca59e40}\label{class_e_n_a_r_c___node_aec22bfe3168aff3c1dda2597cca59e40}} 
+{\bfseries E\+N\+A\+R\+C\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+type, double \+\_\+depth)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_ad187be3f03e0bb09649160eccf529911}\label{class_e_n_a_r_c___node_ad187be3f03e0bb09649160eccf529911}} 
+void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_ac184b11d1a33eb8eb4fb1509260c39cc}\label{class_e_n_a_r_c___node_ac184b11d1a33eb8eb4fb1509260c39cc}} 
+void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng1\+\_\+1, double range)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_aa786c9606508e6278997e843696b9159}\label{class_e_n_a_r_c___node_aa786c9606508e6278997e843696b9159}} 
+void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a93180f0441e68cc6f4f2f48e1b691c82}\label{class_e_n_a_r_c___node_a93180f0441e68cc6f4f2f48e1b691c82}} 
+void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a88426c2f2e350b6e736d6a7fb14dc0fe}\label{class_e_n_a_r_c___node_a88426c2f2e350b6e736d6a7fb14dc0fe}} 
+double {\bfseries get\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_af969a489f00c9f3e1e6acf9b34b96ed8}\label{class_e_n_a_r_c___node_af969a489f00c9f3e1e6acf9b34b96ed8}} 
+void {\bfseries print\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_ae446a816d8b870b6f6abfc9f39804f7b}\label{class_e_n_a_r_c___node_ae446a816d8b870b6f6abfc9f39804f7b}} 
+void {\bfseries input\+\_\+fired} (int time, double incoming\+\_\+output)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a37280a7486e83ec111d8aee180aa4660}\label{class_e_n_a_r_c___node_a37280a7486e83ec111d8aee180aa4660}} 
+void {\bfseries try\+\_\+update\+\_\+deltas} (int time)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a87ced04e586ab905e7fab66a43d8c8b0}\label{class_e_n_a_r_c___node_a87ced04e586ab905e7fab66a43d8c8b0}} 
+void {\bfseries error\+\_\+fired} (int time, double error)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_ac4c21f1a1c6a72d1d277662a57f6eca4}\label{class_e_n_a_r_c___node_ac4c21f1a1c6a72d1d277662a57f6eca4}} 
+void {\bfseries output\+\_\+fired} (int time, double delta)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_afcaf0598d88dbf90a95da40c8dd1acbc}\label{class_e_n_a_r_c___node_afcaf0598d88dbf90a95da40c8dd1acbc}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_acdd0f964f5bafc809f46a3cbc6da7ad5}\label{class_e_n_a_r_c___node_acdd0f964f5bafc809f46a3cbc6da7ad5}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a524aa8da5b4417a7b63a804b1d9c250b}\label{class_e_n_a_r_c___node_a524aa8da5b4417a7b63a804b1d9c250b}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a4cfa1214bb9f07e9046a7cc2addc8dd0}\label{class_e_n_a_r_c___node_a4cfa1214bb9f07e9046a7cc2addc8dd0}} 
+void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a5f1d8a54d46d0073d4813cba9d6bfb92}\label{class_e_n_a_r_c___node_a5f1d8a54d46d0073d4813cba9d6bfb92}} 
+void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_acc90208a1d3168512586cdffaf2f7037}\label{class_e_n_a_r_c___node_acc90208a1d3168512586cdffaf2f7037}} 
+void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_ae63df61935afbe27e7c948c144ead7aa}\label{class_e_n_a_r_c___node_ae63df61935afbe27e7c948c144ead7aa}} 
+void {\bfseries reset} (int \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a8744c1e1af8e3680931c4a83a896281d}\label{class_e_n_a_r_c___node_a8744c1e1af8e3680931c4a83a896281d}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a57b9c7e028398ff1cc59877eae60764d}\label{class_e_n_a_r_c___node_a57b9c7e028398ff1cc59877eae60764d}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a4e2ad9ab106978d25ea2037c03827c57}\label{class_e_n_a_r_c___node_a4e2ad9ab106978d25ea2037c03827c57}} 
+double {\bfseries rw}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a10cd986e7fc71d48c3b025842f27f7a5}\label{class_e_n_a_r_c___node_a10cd986e7fc71d48c3b025842f27f7a5}} 
+double {\bfseries zw}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a96d6daeda5737c974c8ce7f542c9c4ea}\label{class_e_n_a_r_c___node_a96d6daeda5737c974c8ce7f542c9c4ea}} 
+double {\bfseries w1}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_abe2a0fb799e0d5aec3f21ca9933152a8}\label{class_e_n_a_r_c___node_abe2a0fb799e0d5aec3f21ca9933152a8}} 
+double {\bfseries w2}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a4e88b388b3d54ae9eda4360b8f0bba27}\label{class_e_n_a_r_c___node_a4e88b388b3d54ae9eda4360b8f0bba27}} 
+double {\bfseries w3}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a8ff50975ba5c5b4c9c96accab8798ec7}\label{class_e_n_a_r_c___node_a8ff50975ba5c5b4c9c96accab8798ec7}} 
+double {\bfseries w6}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a259708047b1b8f89c0a6556a9c58a36f}\label{class_e_n_a_r_c___node_a259708047b1b8f89c0a6556a9c58a36f}} 
+double {\bfseries w4}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a331a5c5409c297fba27969352dbeae94}\label{class_e_n_a_r_c___node_a331a5c5409c297fba27969352dbeae94}} 
+double {\bfseries w5}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a05ea1be265c112d3ccec8d41bfd38424}\label{class_e_n_a_r_c___node_a05ea1be265c112d3ccec8d41bfd38424}} 
+double {\bfseries w7}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_af6a1d3e04469983a5b3527ddc6b14c77}\label{class_e_n_a_r_c___node_af6a1d3e04469983a5b3527ddc6b14c77}} 
+double {\bfseries w8}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_ad7841c8eea3712a0b68568f2f6b243e4}\label{class_e_n_a_r_c___node_ad7841c8eea3712a0b68568f2f6b243e4}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+zw}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_ab388f1892dd2a27afffa7de5b5454916}\label{class_e_n_a_r_c___node_ab388f1892dd2a27afffa7de5b5454916}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+rw}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a1c1233d50d7f76a4989156e2166be216}\label{class_e_n_a_r_c___node_a1c1233d50d7f76a4989156e2166be216}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+w1}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a5420bb64b3dcedc8f39c6543ed6bec7b}\label{class_e_n_a_r_c___node_a5420bb64b3dcedc8f39c6543ed6bec7b}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+w2}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a8f8f20a85814624540d4ca2e9cc0cdbd}\label{class_e_n_a_r_c___node_a8f8f20a85814624540d4ca2e9cc0cdbd}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+w3}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_ad8f6c6a8041658d8b6455868141d31b2}\label{class_e_n_a_r_c___node_ad8f6c6a8041658d8b6455868141d31b2}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+w6}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a0efdb4db4a0d943745f6903617644786}\label{class_e_n_a_r_c___node_a0efdb4db4a0d943745f6903617644786}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+w4}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_aad83f857a0d19784b920824bf2ad563a}\label{class_e_n_a_r_c___node_aad83f857a0d19784b920824bf2ad563a}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+w5}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a493a42e6415bc016dded89d721a066a5}\label{class_e_n_a_r_c___node_a493a42e6415bc016dded89d721a066a5}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+w7}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a8ffd978b09add0c642467d085ab9ce7c}\label{class_e_n_a_r_c___node_a8ffd978b09add0c642467d085ab9ce7c}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+w8}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a4abb08de2c50185a9a72436a308cb5bd}\label{class_e_n_a_r_c___node_a4abb08de2c50185a9a72436a308cb5bd}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+h\+\_\+prev}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a4ba4d16da41119a44e71f944bfa48f04}\label{class_e_n_a_r_c___node_a4ba4d16da41119a44e71f944bfa48f04}} 
+\textbf{ vector}$<$ double $>$ {\bfseries z}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_af2d437e85901ccfb67f30023ee295ab1}\label{class_e_n_a_r_c___node_af2d437e85901ccfb67f30023ee295ab1}} 
+\textbf{ vector}$<$ double $>$ {\bfseries l\+\_\+d\+\_\+z}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a9f23cfa4f2c1df4f577836e130810124}\label{class_e_n_a_r_c___node_a9f23cfa4f2c1df4f577836e130810124}} 
+\textbf{ vector}$<$ double $>$ {\bfseries w1\+\_\+z}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_afb5f1edb3b2f5910a8eaeccb5f6ac95e}\label{class_e_n_a_r_c___node_afb5f1edb3b2f5910a8eaeccb5f6ac95e}} 
+\textbf{ vector}$<$ double $>$ {\bfseries l\+\_\+w1\+\_\+z}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_af4bd0efc36a2b7e66c82a5937ad18351}\label{class_e_n_a_r_c___node_af4bd0efc36a2b7e66c82a5937ad18351}} 
+\textbf{ vector}$<$ double $>$ {\bfseries w2\+\_\+w1}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a6c3548e92f4e29d121804361a8d8f4fd}\label{class_e_n_a_r_c___node_a6c3548e92f4e29d121804361a8d8f4fd}} 
+\textbf{ vector}$<$ double $>$ {\bfseries l\+\_\+w2\+\_\+w1}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a070be73b34e7532d785c099765d8aa33}\label{class_e_n_a_r_c___node_a070be73b34e7532d785c099765d8aa33}} 
+\textbf{ vector}$<$ double $>$ {\bfseries w3\+\_\+w1}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a4532d97550344dd255750b4d7d0aad12}\label{class_e_n_a_r_c___node_a4532d97550344dd255750b4d7d0aad12}} 
+\textbf{ vector}$<$ double $>$ {\bfseries l\+\_\+w3\+\_\+w1}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a2f526d35d6c834e2d1923a67f5c25328}\label{class_e_n_a_r_c___node_a2f526d35d6c834e2d1923a67f5c25328}} 
+\textbf{ vector}$<$ double $>$ {\bfseries w6\+\_\+w1}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a540ee7e272e9249a9ce9c6f507cf4f42}\label{class_e_n_a_r_c___node_a540ee7e272e9249a9ce9c6f507cf4f42}} 
+\textbf{ vector}$<$ double $>$ {\bfseries l\+\_\+w6\+\_\+w1}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a9a7ee2eced187bd9188db34405d25da3}\label{class_e_n_a_r_c___node_a9a7ee2eced187bd9188db34405d25da3}} 
+\textbf{ vector}$<$ double $>$ {\bfseries w4\+\_\+w2}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a41df03b0d58b33c6cb0de62a35d37df3}\label{class_e_n_a_r_c___node_a41df03b0d58b33c6cb0de62a35d37df3}} 
+\textbf{ vector}$<$ double $>$ {\bfseries l\+\_\+w4\+\_\+w2}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a020ef4fd283a913406ac468d39a67e7e}\label{class_e_n_a_r_c___node_a020ef4fd283a913406ac468d39a67e7e}} 
+\textbf{ vector}$<$ double $>$ {\bfseries w5\+\_\+w3}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_abbf3b0f335fe95413b8f933ab8286251}\label{class_e_n_a_r_c___node_abbf3b0f335fe95413b8f933ab8286251}} 
+\textbf{ vector}$<$ double $>$ {\bfseries l\+\_\+w5\+\_\+w3}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_ab4843c59781ce2c18c57cfda7b345c4d}\label{class_e_n_a_r_c___node_ab4843c59781ce2c18c57cfda7b345c4d}} 
+\textbf{ vector}$<$ double $>$ {\bfseries w7\+\_\+w3}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a4668072e54af5828c66630180cc099af}\label{class_e_n_a_r_c___node_a4668072e54af5828c66630180cc099af}} 
+\textbf{ vector}$<$ double $>$ {\bfseries l\+\_\+w7\+\_\+w3}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a0c2e0d77a4a4878ad54929827829cfa7}\label{class_e_n_a_r_c___node_a0c2e0d77a4a4878ad54929827829cfa7}} 
+\textbf{ vector}$<$ double $>$ {\bfseries w8\+\_\+w3}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a8216b7b36cc86f2f453b4727022d757e}\label{class_e_n_a_r_c___node_a8216b7b36cc86f2f453b4727022d757e}} 
+\textbf{ vector}$<$ double $>$ {\bfseries l\+\_\+w8\+\_\+w3}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_n_a_r_c___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_e_n_a_r_c___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\end{DoxyCompactItemize}
+\doxysubsection*{Additional Inherited Members}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/enarc\+\_\+node.\+hxx\item 
+rnn/enarc\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_e_n_a_s___d_a_g___node.eps b/docs/latex/class_e_n_a_s___d_a_g___node.eps
new file mode 100644
index 00000000..088b5b3b
--- /dev/null
+++ b/docs/latex/class_e_n_a_s___d_a_g___node.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 285.714286
+%%Pages: 0
+%%BeginSetup
+%%EndSetup
+%%EndComments
+
+% ----- variables -----
+
+/boxwidth 0 def
+/boxheight 40 def
+/fontheight 24 def
+/marginwidth 10 def
+/distx 20 def
+/disty 40 def
+/boundaspect 1.750000 def  % aspect ratio of the BoundingBox (width/height)
+/boundx 500 def
+/boundy boundx boundaspect div def
+/xspacing 0 def
+/yspacing 0 def
+/rows 2 def
+/cols 1 def
+/scalefactor 0 def
+/boxfont /Times-Roman findfont fontheight scalefont def
+
+% ----- procedures -----
+
+/dotted { [1 4] 0 setdash } def
+/dashed { [5] 0 setdash } def
+/solid  { [] 0 setdash } def
+
+/max % result = MAX(arg1,arg2)
+{
+  /a exch def
+  /b exch def
+  a b gt {a} {b} ifelse
+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
+} def
+
+/box % draws a box with text 'arg1' at grid pos (arg2,arg3)
+{ gsave
+  2 setlinewidth
+  newpath
+  exch xspacing mul xoffset add
+  exch yspacing mul
+  moveto
+  boxwidth 0 rlineto 
+  0 boxheight rlineto 
+  boxwidth neg 0 rlineto 
+  0 boxheight neg rlineto 
+  closepath
+  dup stringwidth pop neg boxwidth add 2 div
+  boxheight fontheight 2 div sub 2 div
+  rmoveto show stroke
+  grestore
+} def  
+
+/mark
+{ newpath
+  exch xspacing mul xoffset add boxwidth add
+  exch yspacing mul
+  moveto
+  0 boxheight 4 div rlineto
+  boxheight neg 4 div boxheight neg 4 div rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/arrow
+{ newpath
+  moveto
+  3 -8 rlineto
+  -6 0 rlineto
+  3 8 rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/out % draws an output connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight add
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/in % draws an input connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul disty 2 div sub
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/hedge
+{
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight 2 div sub
+  /y exch def
+  /x exch def
+  newpath
+  x y moveto
+  boxwidth 2 div distx add 0 rlineto
+  stroke
+  1 eq
+  { newpath x boxwidth 2 div distx add add y moveto
+    -8 3 rlineto
+    0 -6 rlineto
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+    closepath
+    eofill
+    stroke
+  } if
+} def
+
+/vedge
+{
+  /ye exch def
+  /ys exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add dup
+  ys yspacing mul boxheight 2 div sub
+  moveto
+  ye yspacing mul boxheight 2 div sub
+  lineto
+  stroke
+} def
+
+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
+  moveto
+  xspacing xe xs sub mul 0
+  rlineto
+  stroke
+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(ENAS_DAG_Node) cw
+(RNN_Node_Interface) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (ENAS_DAG_Node) 0.000000 0.000000 box
+ (RNN_Node_Interface) 0.000000 1.000000 box
+
+% ----- relations -----
+
+solid
+0 0.000000 0.000000 out
+solid
+1 0.000000 1.000000 in
diff --git a/docs/latex/class_e_n_a_s___d_a_g___node.tex b/docs/latex/class_e_n_a_s___d_a_g___node.tex
new file mode 100644
index 00000000..d81f645a
--- /dev/null
+++ b/docs/latex/class_e_n_a_s___d_a_g___node.tex
@@ -0,0 +1,218 @@
+\hypertarget{class_e_n_a_s___d_a_g___node}{}\doxysection{E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node Class Reference}
+\label{class_e_n_a_s___d_a_g___node}\index{ENAS\_DAG\_Node@{ENAS\_DAG\_Node}}
+Inheritance diagram for E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_e_n_a_s___d_a_g___node}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_ad2e4167a9eef0cebb3204926e8f6631d}\label{class_e_n_a_s___d_a_g___node_ad2e4167a9eef0cebb3204926e8f6631d}} 
+{\bfseries E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+type, double \+\_\+depth)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a88d5ba425f633f19849d395e636d2d9d}\label{class_e_n_a_s___d_a_g___node_a88d5ba425f633f19849d395e636d2d9d}} 
+void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_aa5441589f008b822d9a67b9bda3f77d6}\label{class_e_n_a_s___d_a_g___node_aa5441589f008b822d9a67b9bda3f77d6}} 
+void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng1\+\_\+1, double range)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_ac1807ef7a5ec4801f352564e675468d0}\label{class_e_n_a_s___d_a_g___node_ac1807ef7a5ec4801f352564e675468d0}} 
+void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_ab3f1568013cb9e1e4f7543c7e8e82fd7}\label{class_e_n_a_s___d_a_g___node_ab3f1568013cb9e1e4f7543c7e8e82fd7}} 
+void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)
+\item 
+double \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_afac6a8241afd3cae5c8d7955e8518c59}{get\+\_\+gradient}} (\textbf{ string} gradient\+\_\+name)
+\begin{DoxyCompactList}\small\item\em Gives the gradients in essence the deriviative of the weights in the memory cell in the network. \end{DoxyCompactList}\item 
+void \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a0676683aa9a220611f4e99a8a44e6e96}{print\+\_\+gradient}} (\textbf{ string} gradient\+\_\+name)
+\begin{DoxyCompactList}\small\item\em Gives the gradients in essence the deriviative of the weights in the memory cell in the network. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a58e17b40715e32a28a57c2ec34cd1997}{activation}} (double value, int act\+\_\+operator)
+\begin{DoxyCompactList}\small\item\em Gives the activations of the node in the memory cell in the network. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_ae73d6fdfcaa9f0ae60628e9529c4373d}{activation\+\_\+derivative}} (double value, double input, int act\+\_\+operator)
+\begin{DoxyCompactList}\small\item\em Gives the activations derviative of the node in the memory cell in the network. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a4b43e0a43e9a6cfc5602571747bd2ee9}\label{class_e_n_a_s___d_a_g___node_a4b43e0a43e9a6cfc5602571747bd2ee9}} 
+void {\bfseries input\+\_\+fired} (int time, double incoming\+\_\+output)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_aaa7340e05d8634d6a51e4a8f7b76179a}\label{class_e_n_a_s___d_a_g___node_aaa7340e05d8634d6a51e4a8f7b76179a}} 
+void {\bfseries try\+\_\+update\+\_\+deltas} (int time)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a575a87ce22d5db310f2d41022a0cdfb2}\label{class_e_n_a_s___d_a_g___node_a575a87ce22d5db310f2d41022a0cdfb2}} 
+void {\bfseries error\+\_\+fired} (int time, double error)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a0383c06026dff9751fd5449a845508bf}\label{class_e_n_a_s___d_a_g___node_a0383c06026dff9751fd5449a845508bf}} 
+void {\bfseries output\+\_\+fired} (int time, double delta)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a155c08c18ff6af0b5a828459b5e91534}\label{class_e_n_a_s___d_a_g___node_a155c08c18ff6af0b5a828459b5e91534}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a0cbec5c4e3155dcd89a46d780afe6e71}\label{class_e_n_a_s___d_a_g___node_a0cbec5c4e3155dcd89a46d780afe6e71}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a4616ae3f60ecb167ea02ed781d32dc09}\label{class_e_n_a_s___d_a_g___node_a4616ae3f60ecb167ea02ed781d32dc09}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a2765dfaa7273f9da0fccdda0d9358311}\label{class_e_n_a_s___d_a_g___node_a2765dfaa7273f9da0fccdda0d9358311}} 
+void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_acc6c518fc61f9c8b9e35972b88022176}\label{class_e_n_a_s___d_a_g___node_acc6c518fc61f9c8b9e35972b88022176}} 
+void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a7569014230b09b47e3307ad371e78a10}\label{class_e_n_a_s___d_a_g___node_a7569014230b09b47e3307ad371e78a10}} 
+void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a0e3e26638335941ec7b174990218330e}\label{class_e_n_a_s___d_a_g___node_a0e3e26638335941ec7b174990218330e}} 
+void {\bfseries reset} (int \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_ab84b22eaca81b3f627c7022aac03576f}\label{class_e_n_a_s___d_a_g___node_ab84b22eaca81b3f627c7022aac03576f}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_aea98ee85dae02da8fa3ecb5bc2b4f895}\label{class_e_n_a_s___d_a_g___node_aea98ee85dae02da8fa3ecb5bc2b4f895}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a96691f6c8700d1443045691b435db9b4}\label{class_e_n_a_s___d_a_g___node_a96691f6c8700d1443045691b435db9b4}} 
+double \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a96691f6c8700d1443045691b435db9b4}{rw}}
+\begin{DoxyCompactList}\small\item\em Weight of the start node in the memory cell. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a543c626068b87030fb140a4ebeb38f30}\label{class_e_n_a_s___d_a_g___node_a543c626068b87030fb140a4ebeb38f30}} 
+double \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a543c626068b87030fb140a4ebeb38f30}{zw}}
+\begin{DoxyCompactList}\small\item\em Weight of the start node in the memory cell. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a169c584563029fdec7d51390c6bef838}\label{class_e_n_a_s___d_a_g___node_a169c584563029fdec7d51390c6bef838}} 
+\textbf{ vector}$<$ double $>$ \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a169c584563029fdec7d51390c6bef838}{weights}}
+\begin{DoxyCompactList}\small\item\em Weights of the subseqeuent nodes in topological order the memory cell. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a6df39cdee9de29977d989383c312afeb}\label{class_e_n_a_s___d_a_g___node_a6df39cdee9de29977d989383c312afeb}} 
+\textbf{ vector}$<$ double $>$ \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a6df39cdee9de29977d989383c312afeb}{d\+\_\+zw}}
+\begin{DoxyCompactList}\small\item\em Gradient of the weight of the start node in the memory cell. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a4c2c49ca7aed21901ad5d79d3f921459}\label{class_e_n_a_s___d_a_g___node_a4c2c49ca7aed21901ad5d79d3f921459}} 
+\textbf{ vector}$<$ double $>$ \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a4c2c49ca7aed21901ad5d79d3f921459}{d\+\_\+rw}}
+\begin{DoxyCompactList}\small\item\em Gradient of the weight of the start node in the memory cell. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a127cf43bd1e8014d9fb951cf26c9b737}\label{class_e_n_a_s___d_a_g___node_a127cf43bd1e8014d9fb951cf26c9b737}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a127cf43bd1e8014d9fb951cf26c9b737}{d\+\_\+weights}}
+\begin{DoxyCompactList}\small\item\em Gradient of the weights of the other nodes in the memory cell. \end{DoxyCompactList}\item 
+\textbf{ vector}$<$ double $>$ \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a366df37adbb4bc2824846ef60b6707e3}{d\+\_\+h\+\_\+prev}}
+\begin{DoxyCompactList}\small\item\em Gradient of the previous output i.\+e. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_ae96b8e1d3d379d097aff2d879ca25fdb}\label{class_e_n_a_s___d_a_g___node_ae96b8e1d3d379d097aff2d879ca25fdb}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_ae96b8e1d3d379d097aff2d879ca25fdb}{Nodes}}
+\begin{DoxyCompactList}\small\item\em Outputs of the nodes in the memory cell connecting with weight wj from node with weight wi. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a0b7939ba90a6db0ba2dda9731eefc38a}\label{class_e_n_a_s___d_a_g___node_a0b7939ba90a6db0ba2dda9731eefc38a}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \mbox{\hyperlink{class_e_n_a_s___d_a_g___node_a0b7939ba90a6db0ba2dda9731eefc38a}{l\+\_\+\+Nodes}}
+\begin{DoxyCompactList}\small\item\em Derivative of the nodes in the memory cell connecting with weight wj from node with weight wi. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_e_n_a_s___d_a_g___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\end{DoxyCompactItemize}
+\doxysubsection*{Additional Inherited Members}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a58e17b40715e32a28a57c2ec34cd1997}\label{class_e_n_a_s___d_a_g___node_a58e17b40715e32a28a57c2ec34cd1997}} 
+\index{ENAS\_DAG\_Node@{ENAS\_DAG\_Node}!activation@{activation}}
+\index{activation@{activation}!ENAS\_DAG\_Node@{ENAS\_DAG\_Node}}
+\doxysubsubsection{\texorpdfstring{activation()}{activation()}}
+{\footnotesize\ttfamily double E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node\+::activation (\begin{DoxyParamCaption}\item[{double}]{value,  }\item[{int}]{act\+\_\+operator }\end{DoxyParamCaption})}
+
+
+
+Gives the activations of the node in the memory cell in the network. 
+
+~\newline
+
+
+
+\begin{DoxyParams}{Parameters}
+{\em value} & is the output of the node after multiplying weights \\
+\hline
+{\em act\+\_\+operator} & is the actiation type \+: sigmoid, tanh, swish, identity\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+output of the node after applying activation 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_ae73d6fdfcaa9f0ae60628e9529c4373d}\label{class_e_n_a_s___d_a_g___node_ae73d6fdfcaa9f0ae60628e9529c4373d}} 
+\index{ENAS\_DAG\_Node@{ENAS\_DAG\_Node}!activation\_derivative@{activation\_derivative}}
+\index{activation\_derivative@{activation\_derivative}!ENAS\_DAG\_Node@{ENAS\_DAG\_Node}}
+\doxysubsubsection{\texorpdfstring{activation\_derivative()}{activation\_derivative()}}
+{\footnotesize\ttfamily double E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node\+::activation\+\_\+derivative (\begin{DoxyParamCaption}\item[{double}]{value,  }\item[{double}]{input,  }\item[{int}]{act\+\_\+operator }\end{DoxyParamCaption})}
+
+
+
+Gives the activations derviative of the node in the memory cell in the network. 
+
+~\newline
+
+
+
+\begin{DoxyParams}{Parameters}
+{\em input} & is the input of the node before multiplying weights \\
+\hline
+{\em value} & is the output of the node after multiplying weights \\
+\hline
+{\em act\+\_\+operator} & is the actiation type \+: sigmoid, tanh, swish, identity\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+output derivative of the node after applying activation 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_afac6a8241afd3cae5c8d7955e8518c59}\label{class_e_n_a_s___d_a_g___node_afac6a8241afd3cae5c8d7955e8518c59}} 
+\index{ENAS\_DAG\_Node@{ENAS\_DAG\_Node}!get\_gradient@{get\_gradient}}
+\index{get\_gradient@{get\_gradient}!ENAS\_DAG\_Node@{ENAS\_DAG\_Node}}
+\doxysubsubsection{\texorpdfstring{get\_gradient()}{get\_gradient()}}
+{\footnotesize\ttfamily double E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node\+::get\+\_\+gradient (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{gradient\+\_\+name }\end{DoxyParamCaption})}
+
+
+
+Gives the gradients in essence the deriviative of the weights in the memory cell in the network. 
+
+~\newline
+
+
+
+\begin{DoxyParams}{Parameters}
+{\em gradient\+\_\+name} & in the weight name.\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+gradient. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a0676683aa9a220611f4e99a8a44e6e96}\label{class_e_n_a_s___d_a_g___node_a0676683aa9a220611f4e99a8a44e6e96}} 
+\index{ENAS\_DAG\_Node@{ENAS\_DAG\_Node}!print\_gradient@{print\_gradient}}
+\index{print\_gradient@{print\_gradient}!ENAS\_DAG\_Node@{ENAS\_DAG\_Node}}
+\doxysubsubsection{\texorpdfstring{print\_gradient()}{print\_gradient()}}
+{\footnotesize\ttfamily void E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node\+::print\+\_\+gradient (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{gradient\+\_\+name }\end{DoxyParamCaption})}
+
+
+
+Gives the gradients in essence the deriviative of the weights in the memory cell in the network. 
+
+~\newline
+
+
+
+\begin{DoxyParams}{Parameters}
+{\em gradient\+\_\+name} & in the weight name.\\
+\hline
+\end{DoxyParams}
+prints the gradient. 
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_e_n_a_s___d_a_g___node_a366df37adbb4bc2824846ef60b6707e3}\label{class_e_n_a_s___d_a_g___node_a366df37adbb4bc2824846ef60b6707e3}} 
+\index{ENAS\_DAG\_Node@{ENAS\_DAG\_Node}!d\_h\_prev@{d\_h\_prev}}
+\index{d\_h\_prev@{d\_h\_prev}!ENAS\_DAG\_Node@{ENAS\_DAG\_Node}}
+\doxysubsubsection{\texorpdfstring{d\_h\_prev}{d\_h\_prev}}
+{\footnotesize\ttfamily \textbf{ vector}$<$double$>$ E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node\+::d\+\_\+h\+\_\+prev\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Gradient of the previous output i.\+e. 
+
+t-\/1 in the memory cell. 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/enas\+\_\+dag\+\_\+node.\+hxx\item 
+rnn/enas\+\_\+dag\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_e_x_a_c_t.tex b/docs/latex/class_e_x_a_c_t.tex
new file mode 100644
index 00000000..fdbafd93
--- /dev/null
+++ b/docs/latex/class_e_x_a_c_t.tex
@@ -0,0 +1,383 @@
+\hypertarget{class_e_x_a_c_t}{}\doxysection{E\+X\+A\+CT Class Reference}
+\label{class_e_x_a_c_t}\index{EXACT@{EXACT}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aa07172a12a4b5681bc94143292eb480e}\label{class_e_x_a_c_t_aa07172a12a4b5681bc94143292eb480e}} 
+{\bfseries E\+X\+A\+CT} (const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&training\+\_\+images, const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&validation\+\_\+images, const \mbox{\hyperlink{class_images_interface}{Images\+Interface}} \&test\+\_\+images, int \+\_\+padding, int \+\_\+population\+\_\+size, int \+\_\+max\+\_\+epochs, bool \+\_\+use\+\_\+sfmp, bool \+\_\+use\+\_\+node\+\_\+operations, int \+\_\+max\+\_\+genomes, \textbf{ string} \+\_\+output\+\_\+directory, \textbf{ string} \+\_\+search\+\_\+name, bool \+\_\+reset\+\_\+weights)
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_af7e6a8aaba03bbea142eff270b591891}\label{class_e_x_a_c_t_af7e6a8aaba03bbea142eff270b591891}} 
+int32\+\_\+t {\bfseries population\+\_\+contains} (\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$genome) const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aa753110ab31a4388bdbc871cebbd7640}\label{class_e_x_a_c_t_aa753110ab31a4388bdbc871cebbd7640}} 
+\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries get\+\_\+best\+\_\+genome} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aa59949f19aaa70d7d8e02883de8289ae}\label{class_e_x_a_c_t_aa59949f19aaa70d7d8e02883de8289ae}} 
+int {\bfseries get\+\_\+number\+\_\+genomes} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a054bca8b67f47478ba5ad4ea0fa3309a}\label{class_e_x_a_c_t_a054bca8b67f47478ba5ad4ea0fa3309a}} 
+\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries get\+\_\+genome} (int i)
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a4898413f61036a8fe5a1238480eee9cf}\label{class_e_x_a_c_t_a4898413f61036a8fe5a1238480eee9cf}} 
+void {\bfseries generate\+\_\+initial\+\_\+hyperparameters} (float \&mu, float \&mu\+\_\+delta, float \&learning\+\_\+rate, float \&learning\+\_\+rate\+\_\+delta, float \&weight\+\_\+decay, float \&weight\+\_\+decay\+\_\+delta, float \&alpha, int \&velocity\+\_\+reset, float \&input\+\_\+dropout\+\_\+probability, float \&hidden\+\_\+dropout\+\_\+probability, int \&batch\+\_\+size)
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a5c47f423ef8c16231ef44a2b44edee34}\label{class_e_x_a_c_t_a5c47f423ef8c16231ef44a2b44edee34}} 
+void {\bfseries generate\+\_\+simplex\+\_\+hyperparameters} (float \&mu, float \&mu\+\_\+delta, float \&learning\+\_\+rate, float \&learning\+\_\+rate\+\_\+delta, float \&weight\+\_\+decay, float \&weight\+\_\+decay\+\_\+delta, float \&alpha, int \&velocity\+\_\+reset, float \&input\+\_\+dropout\+\_\+probability, float \&hidden\+\_\+dropout\+\_\+probability, int \&batch\+\_\+size)
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a2a0590a7d4a48a08b92d4ef318231eff}\label{class_e_x_a_c_t_a2a0590a7d4a48a08b92d4ef318231eff}} 
+bool {\bfseries add\+\_\+edge} (\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$child, \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$node1, \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$node2, int edge\+\_\+type)
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_af5df7c2b42c9bc317d97f9d5e55678aa}\label{class_e_x_a_c_t_af5df7c2b42c9bc317d97f9d5e55678aa}} 
+\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries generate\+\_\+individual} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a41fd91c869d2267495b5fde95e675646}\label{class_e_x_a_c_t_a41fd91c869d2267495b5fde95e675646}} 
+\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries create\+\_\+mutation} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a7a240b0ecead548bd7229ac8048172f2}\label{class_e_x_a_c_t_a7a240b0ecead548bd7229ac8048172f2}} 
+\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries create\+\_\+child} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a420b2f6845d6c983428e62a55c35e41f}\label{class_e_x_a_c_t_a420b2f6845d6c983428e62a55c35e41f}} 
+bool {\bfseries insert\+\_\+genome} (\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$genome)
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a10649d1ee68d808d79b212d672adea69}\label{class_e_x_a_c_t_a10649d1ee68d808d79b212d672adea69}} 
+int {\bfseries get\+\_\+inserted\+\_\+genomes} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a9bf0ff23c967cedfcbb27bf381a078cc}\label{class_e_x_a_c_t_a9bf0ff23c967cedfcbb27bf381a078cc}} 
+int {\bfseries get\+\_\+max\+\_\+genomes} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_acbbaa9e959a10c3876c36984efe375c5}\label{class_e_x_a_c_t_acbbaa9e959a10c3876c36984efe375c5}} 
+void {\bfseries write\+\_\+individual\+\_\+hyperparameters} (\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$individual)
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a22f6484a62bf7b7869be4319434810d6}\label{class_e_x_a_c_t_a22f6484a62bf7b7869be4319434810d6}} 
+void {\bfseries write\+\_\+statistics} (int new\+\_\+generation\+\_\+id, float new\+\_\+fitness)
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a4e27fa2931089664ac96c249d510daab}\label{class_e_x_a_c_t_a4e27fa2931089664ac96c249d510daab}} 
+void {\bfseries write\+\_\+statistics\+\_\+header} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a8f3b7ec35707d6099537c379e409503a}\label{class_e_x_a_c_t_a8f3b7ec35707d6099537c379e409503a}} 
+void {\bfseries write\+\_\+hyperparameters\+\_\+header} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a11d273bfda915a4c9bdf6e259f4f965c}\label{class_e_x_a_c_t_a11d273bfda915a4c9bdf6e259f4f965c}} 
+int {\bfseries get\+\_\+id} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ada53369a2343d171a5700033b4db9103}\label{class_e_x_a_c_t_ada53369a2343d171a5700033b4db9103}} 
+\textbf{ string} {\bfseries get\+\_\+search\+\_\+name} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a1685cdd24397d3050308cceeea137637}\label{class_e_x_a_c_t_a1685cdd24397d3050308cceeea137637}} 
+\textbf{ string} {\bfseries get\+\_\+output\+\_\+directory} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a5dad4819829401f274f5fa1eb5db27c0}\label{class_e_x_a_c_t_a5dad4819829401f274f5fa1eb5db27c0}} 
+\textbf{ string} {\bfseries get\+\_\+training\+\_\+filename} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aec2a96922bf9a907eb298e881d577528}\label{class_e_x_a_c_t_aec2a96922bf9a907eb298e881d577528}} 
+\textbf{ string} {\bfseries get\+\_\+validation\+\_\+filename} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a1d210ba2fcba345c5d0c99a689fc26b1}\label{class_e_x_a_c_t_a1d210ba2fcba345c5d0c99a689fc26b1}} 
+\textbf{ string} {\bfseries get\+\_\+test\+\_\+filename} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_af29d9ebd9827e46e4986f8efa22537cf}\label{class_e_x_a_c_t_af29d9ebd9827e46e4986f8efa22537cf}} 
+int {\bfseries get\+\_\+number\+\_\+training\+\_\+images} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a735a669490c74d148ecaf38a080b1649}\label{class_e_x_a_c_t_a735a669490c74d148ecaf38a080b1649}} 
+bool {\bfseries is\+\_\+identical} (\mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} $\ast$other, bool testing\+\_\+checkpoint)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a4ff6a3e7aa2147d89f3070abca292219}\label{class_e_x_a_c_t_a4ff6a3e7aa2147d89f3070abca292219}} 
+int {\bfseries id}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a7dea673ae78b80d8d3b1b36765e23da6}\label{class_e_x_a_c_t_a7dea673ae78b80d8d3b1b36765e23da6}} 
+\textbf{ string} {\bfseries search\+\_\+name}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a4d4d54112b92f273117d592e64d4aa53}\label{class_e_x_a_c_t_a4d4d54112b92f273117d592e64d4aa53}} 
+\textbf{ string} {\bfseries output\+\_\+directory}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a52273b3e82104a5ab2636a691538f262}\label{class_e_x_a_c_t_a52273b3e82104a5ab2636a691538f262}} 
+\textbf{ string} {\bfseries training\+\_\+filename}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a2da36490884fa2088902c7827f9ee9ad}\label{class_e_x_a_c_t_a2da36490884fa2088902c7827f9ee9ad}} 
+\textbf{ string} {\bfseries validation\+\_\+filename}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ab16d32b0276bd633448df98bd2d0c26f}\label{class_e_x_a_c_t_ab16d32b0276bd633448df98bd2d0c26f}} 
+\textbf{ string} {\bfseries test\+\_\+filename}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a1193dab8b80999507953105260b89c90}\label{class_e_x_a_c_t_a1193dab8b80999507953105260b89c90}} 
+int {\bfseries number\+\_\+training\+\_\+images}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a770120c255c746cf78f1ef01a77013a2}\label{class_e_x_a_c_t_a770120c255c746cf78f1ef01a77013a2}} 
+int {\bfseries number\+\_\+validation\+\_\+images}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a2d9fd0187461822f9d9cad8460a8160d}\label{class_e_x_a_c_t_a2d9fd0187461822f9d9cad8460a8160d}} 
+int {\bfseries number\+\_\+test\+\_\+images}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ac0ec229aa866a59ea8f0edb027d52e1f}\label{class_e_x_a_c_t_ac0ec229aa866a59ea8f0edb027d52e1f}} 
+int {\bfseries padding}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a0c3b512c72cead879e599e280d84d1f7}\label{class_e_x_a_c_t_a0c3b512c72cead879e599e280d84d1f7}} 
+int {\bfseries image\+\_\+channels}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a594da931a28af75820a291d6148218a8}\label{class_e_x_a_c_t_a594da931a28af75820a291d6148218a8}} 
+int {\bfseries image\+\_\+rows}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ae6a04f163763949b3b57e3742980b61b}\label{class_e_x_a_c_t_ae6a04f163763949b3b57e3742980b61b}} 
+int {\bfseries image\+\_\+cols}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a48b74e4466fd787d8feced4fed0a3dec}\label{class_e_x_a_c_t_a48b74e4466fd787d8feced4fed0a3dec}} 
+int {\bfseries number\+\_\+classes}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aff849680b6129075ccae0c9ab8e1d8d6}\label{class_e_x_a_c_t_aff849680b6129075ccae0c9ab8e1d8d6}} 
+int {\bfseries population\+\_\+size}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a0370980df6acd821683d88e9bdd33962}\label{class_e_x_a_c_t_a0370980df6acd821683d88e9bdd33962}} 
+int {\bfseries node\+\_\+innovation\+\_\+count}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a57b13360bf5056eab42b2d7763c487dc}\label{class_e_x_a_c_t_a57b13360bf5056eab42b2d7763c487dc}} 
+int {\bfseries edge\+\_\+innovation\+\_\+count}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a4b92bc0f8023082bcd01b4d152d2a1fe}\label{class_e_x_a_c_t_a4b92bc0f8023082bcd01b4d152d2a1fe}} 
+\textbf{ minstd\+\_\+rand0} {\bfseries generator}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a6813eddd66480ac274f06baf7f0dc41c}\label{class_e_x_a_c_t_a6813eddd66480ac274f06baf7f0dc41c}} 
+\mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} {\bfseries normal\+\_\+distribution}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aa142f7cc9aa4e16100cd2f40a9e9eee5}\label{class_e_x_a_c_t_aa142f7cc9aa4e16100cd2f40a9e9eee5}} 
+\textbf{ uniform\+\_\+int\+\_\+distribution}$<$ long $>$ {\bfseries rng\+\_\+long}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a1f556f776d8bb3840f602f5697e91187}\label{class_e_x_a_c_t_a1f556f776d8bb3840f602f5697e91187}} 
+\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ float $>$ {\bfseries rng\+\_\+float}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a8dd2e61aa97ce250f94b363dc083cb40}\label{class_e_x_a_c_t_a8dd2e61aa97ce250f94b363dc083cb40}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$ $>$ {\bfseries genomes}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ad34ad2c58c04929977541e699b946a59}\label{class_e_x_a_c_t_ad34ad2c58c04929977541e699b946a59}} 
+int {\bfseries best\+\_\+predictions\+\_\+genome\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_afb769815695dd899af1bd37ebb3a1371}\label{class_e_x_a_c_t_afb769815695dd899af1bd37ebb3a1371}} 
+\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries best\+\_\+predictions\+\_\+genome}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_adc11a9c24ed821a389d48ea2def3831e}\label{class_e_x_a_c_t_adc11a9c24ed821a389d48ea2def3831e}} 
+int {\bfseries genomes\+\_\+generated}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aa45127bc39970a958a3b9270d22fb408}\label{class_e_x_a_c_t_aa45127bc39970a958a3b9270d22fb408}} 
+int {\bfseries inserted\+\_\+genomes}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aad0ec22f335640892800c001c974aed3}\label{class_e_x_a_c_t_aad0ec22f335640892800c001c974aed3}} 
+int {\bfseries max\+\_\+genomes}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ac7902f4f729f7255ea276185013376a0}\label{class_e_x_a_c_t_ac7902f4f729f7255ea276185013376a0}} 
+bool {\bfseries reset\+\_\+weights}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a55615bb47f3710112a8396fd0ba5f49c}\label{class_e_x_a_c_t_a55615bb47f3710112a8396fd0ba5f49c}} 
+int {\bfseries max\+\_\+epochs}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a14e69858b11edeeadd7672dea53e2dcf}\label{class_e_x_a_c_t_a14e69858b11edeeadd7672dea53e2dcf}} 
+bool {\bfseries use\+\_\+sfmp}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a037fa89581a059e40ee74ba06505cae1}\label{class_e_x_a_c_t_a037fa89581a059e40ee74ba06505cae1}} 
+bool {\bfseries use\+\_\+node\+\_\+operations}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_af36089a98a0f3157804245844c95afcd}\label{class_e_x_a_c_t_af36089a98a0f3157804245844c95afcd}} 
+float {\bfseries initial\+\_\+batch\+\_\+size\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a2e78240010f9585e5274f5cdaae4f37f}\label{class_e_x_a_c_t_a2e78240010f9585e5274f5cdaae4f37f}} 
+float {\bfseries initial\+\_\+batch\+\_\+size\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a171f31801dbd5fdf3c0fe5f942494673}\label{class_e_x_a_c_t_a171f31801dbd5fdf3c0fe5f942494673}} 
+float {\bfseries batch\+\_\+size\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a189ae715563346daf3468fe991ecf7d7}\label{class_e_x_a_c_t_a189ae715563346daf3468fe991ecf7d7}} 
+float {\bfseries batch\+\_\+size\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a71af8f5f60b9905da3e38536a253f520}\label{class_e_x_a_c_t_a71af8f5f60b9905da3e38536a253f520}} 
+float {\bfseries initial\+\_\+mu\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_af336cdca4cb632381be7afacfd6fd649}\label{class_e_x_a_c_t_af336cdca4cb632381be7afacfd6fd649}} 
+float {\bfseries initial\+\_\+mu\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ae2c963f8d839d8794d22431ad3294026}\label{class_e_x_a_c_t_ae2c963f8d839d8794d22431ad3294026}} 
+float {\bfseries mu\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a06a68b3fd84b5464f0bd9bb6456153d6}\label{class_e_x_a_c_t_a06a68b3fd84b5464f0bd9bb6456153d6}} 
+float {\bfseries mu\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a901dabdead107ad59ec450fceb9910be}\label{class_e_x_a_c_t_a901dabdead107ad59ec450fceb9910be}} 
+float {\bfseries initial\+\_\+mu\+\_\+delta\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a06ccd9e8330002332a81f42617b72a19}\label{class_e_x_a_c_t_a06ccd9e8330002332a81f42617b72a19}} 
+float {\bfseries initial\+\_\+mu\+\_\+delta\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a53cc7850b2aacf1db32c3bc8ce875fef}\label{class_e_x_a_c_t_a53cc7850b2aacf1db32c3bc8ce875fef}} 
+float {\bfseries mu\+\_\+delta\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a62e5f568b3879740cc93dacb8d39ef51}\label{class_e_x_a_c_t_a62e5f568b3879740cc93dacb8d39ef51}} 
+float {\bfseries mu\+\_\+delta\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a3e68a1aa008edbe22e77f2794a2ea782}\label{class_e_x_a_c_t_a3e68a1aa008edbe22e77f2794a2ea782}} 
+float {\bfseries initial\+\_\+learning\+\_\+rate\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_abc7124cc432b7633de44ad8b9c95bf78}\label{class_e_x_a_c_t_abc7124cc432b7633de44ad8b9c95bf78}} 
+float {\bfseries initial\+\_\+learning\+\_\+rate\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a3a559680cdac64c9f8c2e3510d902965}\label{class_e_x_a_c_t_a3a559680cdac64c9f8c2e3510d902965}} 
+float {\bfseries learning\+\_\+rate\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a44a2e19e4d277a75192c5f2a6e01369c}\label{class_e_x_a_c_t_a44a2e19e4d277a75192c5f2a6e01369c}} 
+float {\bfseries learning\+\_\+rate\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a0ddf4a909928e70016fd84d29a00a0ba}\label{class_e_x_a_c_t_a0ddf4a909928e70016fd84d29a00a0ba}} 
+float {\bfseries initial\+\_\+learning\+\_\+rate\+\_\+delta\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a0f71b07d6d7e6a3e4c860c78026f0469}\label{class_e_x_a_c_t_a0f71b07d6d7e6a3e4c860c78026f0469}} 
+float {\bfseries initial\+\_\+learning\+\_\+rate\+\_\+delta\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aa4551e9b6d8a08a2bb29e7ad903bf658}\label{class_e_x_a_c_t_aa4551e9b6d8a08a2bb29e7ad903bf658}} 
+float {\bfseries learning\+\_\+rate\+\_\+delta\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a0ff91f386b64a8a664566bd1dd06ff97}\label{class_e_x_a_c_t_a0ff91f386b64a8a664566bd1dd06ff97}} 
+float {\bfseries learning\+\_\+rate\+\_\+delta\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ae1c3ef27ec684bf73dff51ef0fda94d6}\label{class_e_x_a_c_t_ae1c3ef27ec684bf73dff51ef0fda94d6}} 
+float {\bfseries initial\+\_\+weight\+\_\+decay\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a8854feec34a613e96611dd2ac1ee6d4c}\label{class_e_x_a_c_t_a8854feec34a613e96611dd2ac1ee6d4c}} 
+float {\bfseries initial\+\_\+weight\+\_\+decay\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a4ef2a871380f76b554cbc5e30aa37822}\label{class_e_x_a_c_t_a4ef2a871380f76b554cbc5e30aa37822}} 
+float {\bfseries weight\+\_\+decay\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a2e791d47208a0266dd4764e4f0639192}\label{class_e_x_a_c_t_a2e791d47208a0266dd4764e4f0639192}} 
+float {\bfseries weight\+\_\+decay\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a28169e82f7b2190953c395f424a9b8c9}\label{class_e_x_a_c_t_a28169e82f7b2190953c395f424a9b8c9}} 
+float {\bfseries initial\+\_\+weight\+\_\+decay\+\_\+delta\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a0d89b3d47602abd40241159372c28a54}\label{class_e_x_a_c_t_a0d89b3d47602abd40241159372c28a54}} 
+float {\bfseries initial\+\_\+weight\+\_\+decay\+\_\+delta\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a114f920b4ba5fa5b430c6599314231ee}\label{class_e_x_a_c_t_a114f920b4ba5fa5b430c6599314231ee}} 
+float {\bfseries weight\+\_\+decay\+\_\+delta\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a0ee47bce29272ea9cf82df4b37c22464}\label{class_e_x_a_c_t_a0ee47bce29272ea9cf82df4b37c22464}} 
+float {\bfseries weight\+\_\+decay\+\_\+delta\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a75e1c0fbf65d2d87f475271e5ecf59f5}\label{class_e_x_a_c_t_a75e1c0fbf65d2d87f475271e5ecf59f5}} 
+float {\bfseries epsilon}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a8b044ed2291164ac57c78f438cea57e8}\label{class_e_x_a_c_t_a8b044ed2291164ac57c78f438cea57e8}} 
+float {\bfseries initial\+\_\+alpha\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a16d3a39a229b96d44eacf496f128bf3b}\label{class_e_x_a_c_t_a16d3a39a229b96d44eacf496f128bf3b}} 
+float {\bfseries initial\+\_\+alpha\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a4df0d4b449d591ea00aa9bb71d8230db}\label{class_e_x_a_c_t_a4df0d4b449d591ea00aa9bb71d8230db}} 
+float {\bfseries alpha\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a7b4a1892d88f47d660815129866e6952}\label{class_e_x_a_c_t_a7b4a1892d88f47d660815129866e6952}} 
+float {\bfseries alpha\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a603facb7d274f3ab6b1b476a01a0abb0}\label{class_e_x_a_c_t_a603facb7d274f3ab6b1b476a01a0abb0}} 
+int {\bfseries initial\+\_\+velocity\+\_\+reset\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ae0e98a582cd54fcec52eb3caa81905cf}\label{class_e_x_a_c_t_ae0e98a582cd54fcec52eb3caa81905cf}} 
+int {\bfseries initial\+\_\+velocity\+\_\+reset\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ab3c0f20b8a0577d0ef34600e6eb90e53}\label{class_e_x_a_c_t_ab3c0f20b8a0577d0ef34600e6eb90e53}} 
+int {\bfseries velocity\+\_\+reset\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aa659ec75a996c034748318c7e4953f55}\label{class_e_x_a_c_t_aa659ec75a996c034748318c7e4953f55}} 
+int {\bfseries velocity\+\_\+reset\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a0a3449dbe5c9212a9fc56125125bd617}\label{class_e_x_a_c_t_a0a3449dbe5c9212a9fc56125125bd617}} 
+float {\bfseries initial\+\_\+input\+\_\+dropout\+\_\+probability\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ae89ac4a3cf182906e1c99afcacad6ced}\label{class_e_x_a_c_t_ae89ac4a3cf182906e1c99afcacad6ced}} 
+float {\bfseries initial\+\_\+input\+\_\+dropout\+\_\+probability\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ad52f47b38df3bac7c6c763676a294644}\label{class_e_x_a_c_t_ad52f47b38df3bac7c6c763676a294644}} 
+float {\bfseries input\+\_\+dropout\+\_\+probability\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_afc6663ee25e8c3db6ad07e935b02708d}\label{class_e_x_a_c_t_afc6663ee25e8c3db6ad07e935b02708d}} 
+float {\bfseries input\+\_\+dropout\+\_\+probability\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a39a3de3ed0d016a42e95416775100b0c}\label{class_e_x_a_c_t_a39a3de3ed0d016a42e95416775100b0c}} 
+float {\bfseries initial\+\_\+hidden\+\_\+dropout\+\_\+probability\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a24d3eb1fa4140650a0f1514ddefe99a1}\label{class_e_x_a_c_t_a24d3eb1fa4140650a0f1514ddefe99a1}} 
+float {\bfseries initial\+\_\+hidden\+\_\+dropout\+\_\+probability\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a92918e0dd76fbf90000a4a7f30484a46}\label{class_e_x_a_c_t_a92918e0dd76fbf90000a4a7f30484a46}} 
+float {\bfseries hidden\+\_\+dropout\+\_\+probability\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a0e39ecc89d8ae9db58cba9fe89d47d5e}\label{class_e_x_a_c_t_a0e39ecc89d8ae9db58cba9fe89d47d5e}} 
+float {\bfseries hidden\+\_\+dropout\+\_\+probability\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a41b5a93e9bd66bf6478f86c6d039a810}\label{class_e_x_a_c_t_a41b5a93e9bd66bf6478f86c6d039a810}} 
+float {\bfseries reset\+\_\+weights\+\_\+chance}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a95f5a06c7658d3162e2971ba72eca92b}\label{class_e_x_a_c_t_a95f5a06c7658d3162e2971ba72eca92b}} 
+float {\bfseries crossover\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_af7f60e5cef67d16eec1f227b470394c8}\label{class_e_x_a_c_t_af7f60e5cef67d16eec1f227b470394c8}} 
+float {\bfseries more\+\_\+fit\+\_\+parent\+\_\+crossover}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a3aa717e8c14243ed74eba9a6fc5db8bd}\label{class_e_x_a_c_t_a3aa717e8c14243ed74eba9a6fc5db8bd}} 
+float {\bfseries less\+\_\+fit\+\_\+parent\+\_\+crossover}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a55be467a8ebb54294b3afc5033f1a865}\label{class_e_x_a_c_t_a55be467a8ebb54294b3afc5033f1a865}} 
+float {\bfseries crossover\+\_\+alter\+\_\+edge\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_aeb0da7991485c61f8642ff86670cb9b9}\label{class_e_x_a_c_t_aeb0da7991485c61f8642ff86670cb9b9}} 
+int {\bfseries number\+\_\+mutations}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a8e1ce20cf29cdec578f092e40bb4f2f4}\label{class_e_x_a_c_t_a8e1ce20cf29cdec578f092e40bb4f2f4}} 
+float {\bfseries edge\+\_\+alter\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a7339211897c27d3e315b8e64e875d8bf}\label{class_e_x_a_c_t_a7339211897c27d3e315b8e64e875d8bf}} 
+float {\bfseries edge\+\_\+disable}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_ab10171a7d43b44c94cf677d2ae0cd1c0}\label{class_e_x_a_c_t_ab10171a7d43b44c94cf677d2ae0cd1c0}} 
+float {\bfseries edge\+\_\+enable}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a6d762a47caa4db8375396a668d241956}\label{class_e_x_a_c_t_a6d762a47caa4db8375396a668d241956}} 
+float {\bfseries edge\+\_\+split}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a917d5a47f3cbb3ed0a4d4b579ed31167}\label{class_e_x_a_c_t_a917d5a47f3cbb3ed0a4d4b579ed31167}} 
+float {\bfseries edge\+\_\+add}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a091e33bc8d581d40457b9e11ed25f634}\label{class_e_x_a_c_t_a091e33bc8d581d40457b9e11ed25f634}} 
+float {\bfseries node\+\_\+change\+\_\+size}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_af5e4848023660565d37a7b473cb0b601}\label{class_e_x_a_c_t_af5e4848023660565d37a7b473cb0b601}} 
+float {\bfseries node\+\_\+change\+\_\+size\+\_\+x}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_abeac3de237097a910c03710936e7f399}\label{class_e_x_a_c_t_abeac3de237097a910c03710936e7f399}} 
+float {\bfseries node\+\_\+change\+\_\+size\+\_\+y}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_af92bdf48f36df6b4f24b201e99e678be}\label{class_e_x_a_c_t_af92bdf48f36df6b4f24b201e99e678be}} 
+float {\bfseries node\+\_\+add}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_adeee07b000e7c8c6894e048c7854b7c2}\label{class_e_x_a_c_t_adeee07b000e7c8c6894e048c7854b7c2}} 
+float {\bfseries node\+\_\+split}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a20f46775a93711394c9135d2feeb0394}\label{class_e_x_a_c_t_a20f46775a93711394c9135d2feeb0394}} 
+float {\bfseries node\+\_\+merge}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_af43fc01bd9ab3fdf43b4f54566a6bdf6}\label{class_e_x_a_c_t_af43fc01bd9ab3fdf43b4f54566a6bdf6}} 
+float {\bfseries node\+\_\+enable}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a73ad115e727984f98a9384dbe578a365}\label{class_e_x_a_c_t_a73ad115e727984f98a9384dbe578a365}} 
+float {\bfseries node\+\_\+disable}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a25cf5132e753b0cd6e93c6b9ee04ee91}\label{class_e_x_a_c_t_a25cf5132e753b0cd6e93c6b9ee04ee91}} 
+\textbf{ map}$<$ \textbf{ string}, int $>$ {\bfseries inserted\+\_\+from\+\_\+map}
+\item 
+\mbox{\Hypertarget{class_e_x_a_c_t_a3c3cb7bde73a2608c162f2edf002d0ea}\label{class_e_x_a_c_t_a3c3cb7bde73a2608c162f2edf002d0ea}} 
+\textbf{ map}$<$ \textbf{ string}, int $>$ {\bfseries generated\+\_\+from\+\_\+map}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+cnn/exact.\+hxx\item 
+cnn/exact.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_e_x_a_m_m.tex b/docs/latex/class_e_x_a_m_m.tex
new file mode 100644
index 00000000..264269b6
--- /dev/null
+++ b/docs/latex/class_e_x_a_m_m.tex
@@ -0,0 +1,293 @@
+\hypertarget{class_e_x_a_m_m}{}\doxysection{E\+X\+A\+MM Class Reference}
+\label{class_e_x_a_m_m}\index{EXAMM@{EXAMM}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a6a5ab3247fb1b1dc0804095181a690e8}\label{class_e_x_a_m_m_a6a5ab3247fb1b1dc0804095181a690e8}} 
+{\bfseries E\+X\+A\+MM} (int32\+\_\+t \+\_\+population\+\_\+size, int32\+\_\+t \+\_\+number\+\_\+islands, int32\+\_\+t \+\_\+max\+\_\+genomes, int32\+\_\+t \+\_\+extinction\+\_\+event\+\_\+generation\+\_\+number, int32\+\_\+t \+\_\+islands\+\_\+to\+\_\+exterminate, \textbf{ string} \+\_\+island\+\_\+ranking\+\_\+method, \textbf{ string} \+\_\+repopulation\+\_\+method, int32\+\_\+t \+\_\+repopulation\+\_\+mutations, bool \+\_\+repeat\+\_\+extinction, \textbf{ string} \+\_\+speciation\+\_\+method, double \+\_\+species\+\_\+threshold, double \+\_\+fitness\+\_\+threshold, double \+\_\+neat\+\_\+c1, double \+\_\+neat\+\_\+c2, double \+\_\+neat\+\_\+c3, const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+output\+\_\+parameter\+\_\+names, \textbf{ string} \+\_\+normalize\+\_\+type, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+mins, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+maxs, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+avgs, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+std\+\_\+devs, Weight\+Type \+\_\+weight\+\_\+initialize, Weight\+Type \+\_\+weight\+\_\+inheritance, Weight\+Type \+\_\+mutated\+\_\+component\+\_\+weight, int32\+\_\+t \+\_\+bp\+\_\+iterations, double \+\_\+learning\+\_\+rate, bool \+\_\+use\+\_\+high\+\_\+threshold, double \+\_\+high\+\_\+threshold, bool \+\_\+use\+\_\+low\+\_\+threshold, double \+\_\+low\+\_\+threshold, bool \+\_\+use\+\_\+dropout, double \+\_\+dropout\+\_\+probability, int32\+\_\+t \+\_\+min\+\_\+recurrent\+\_\+depth, int32\+\_\+t \+\_\+max\+\_\+recurrent\+\_\+depth, bool \+\_\+use\+\_\+regression, \textbf{ string} \+\_\+output\+\_\+directory, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$seed\+\_\+genome, bool \+\_\+start\+\_\+filled)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a513a581a6f62588c171a020769a00721}\label{class_e_x_a_m_m_a513a581a6f62588c171a020769a00721}} 
+void {\bfseries print} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a3f1d179ed9868a6ea31f540a1f2dd01d}\label{class_e_x_a_m_m_a3f1d179ed9868a6ea31f540a1f2dd01d}} 
+void {\bfseries update\+\_\+log} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ac515c3c0da368cfead977258dc4c5fcf}\label{class_e_x_a_m_m_ac515c3c0da368cfead977258dc4c5fcf}} 
+void {\bfseries write\+\_\+memory\+\_\+log} (\textbf{ string} filename)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a18b82d31a77efaf4ab29c3f1b35c9d05}\label{class_e_x_a_m_m_a18b82d31a77efaf4ab29c3f1b35c9d05}} 
+void {\bfseries set\+\_\+possible\+\_\+node\+\_\+types} (\textbf{ vector}$<$ \textbf{ string} $>$ possible\+\_\+node\+\_\+type\+\_\+strings)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af933b3e3977086cc79576228228d204e}\label{class_e_x_a_m_m_af933b3e3977086cc79576228228d204e}} 
+\textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ {\bfseries get\+\_\+recurrent\+\_\+depth\+\_\+dist} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a610c44be6274f9210ed97c4ade988c5c}\label{class_e_x_a_m_m_a610c44be6274f9210ed97c4ade988c5c}} 
+int {\bfseries get\+\_\+random\+\_\+node\+\_\+type} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a39367bdce7e9eae18d62da785875a106}\label{class_e_x_a_m_m_a39367bdce7e9eae18d62da785875a106}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries generate\+\_\+genome} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a1ce57d9a370a0a62185b883378d01fac}\label{class_e_x_a_m_m_a1ce57d9a370a0a62185b883378d01fac}} 
+bool {\bfseries insert\+\_\+genome} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$genome)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ae3a5a9f5fbaf9d8a7ac0ce7e5d649afa}\label{class_e_x_a_m_m_ae3a5a9f5fbaf9d8a7ac0ce7e5d649afa}} 
+void {\bfseries mutate} (int32\+\_\+t max\+\_\+mutations, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$p1)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_aa35e9d1a7c791b18e887dbc50fc9c31e}\label{class_e_x_a_m_m_aa35e9d1a7c791b18e887dbc50fc9c31e}} 
+void {\bfseries attempt\+\_\+node\+\_\+insert} (\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ \&child\+\_\+nodes, const \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$node, const \textbf{ vector}$<$ double $>$ \&new\+\_\+weights)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a4a4ebe08b32e094f864ac195c52bec0c}\label{class_e_x_a_m_m_a4a4ebe08b32e094f864ac195c52bec0c}} 
+void {\bfseries attempt\+\_\+edge\+\_\+insert} (\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ $>$ \&child\+\_\+edges, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ \&child\+\_\+nodes, \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$edge, \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$second\+\_\+edge, bool set\+\_\+enabled)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a742756b154742bcb13b2a0c39213434e}\label{class_e_x_a_m_m_a742756b154742bcb13b2a0c39213434e}} 
+void {\bfseries attempt\+\_\+recurrent\+\_\+edge\+\_\+insert} (\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$ $>$ \&child\+\_\+recurrent\+\_\+edges, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ \&child\+\_\+nodes, \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$recurrent\+\_\+edge, \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$second\+\_\+edge, bool set\+\_\+enabled)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a00fc892dfaa53823f794546763d7ea01}\label{class_e_x_a_m_m_a00fc892dfaa53823f794546763d7ea01}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries crossover} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$p1, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$p2)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ad4ccccc7c2e33b3648f00a4d7ea51e04}\label{class_e_x_a_m_m_ad4ccccc7c2e33b3648f00a4d7ea51e04}} 
+double {\bfseries get\+\_\+best\+\_\+fitness} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a22845d05f489e0b6f4fe40161648e9d2}\label{class_e_x_a_m_m_a22845d05f489e0b6f4fe40161648e9d2}} 
+double {\bfseries get\+\_\+worst\+\_\+fitness} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_adde23dd0f662da31b946331c94263ad1}\label{class_e_x_a_m_m_adde23dd0f662da31b946331c94263ad1}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries get\+\_\+best\+\_\+genome} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ad71eb3566c412c44ab4807274c12ed6e}\label{class_e_x_a_m_m_ad71eb3566c412c44ab4807274c12ed6e}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries get\+\_\+worst\+\_\+genome} ()
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a5ac84a240c9e9bd191106099da210ae8}\label{class_e_x_a_m_m_a5ac84a240c9e9bd191106099da210ae8}} 
+\textbf{ string} {\bfseries get\+\_\+output\+\_\+directory} () const
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a7bbe9fdf1c7385c055b89fcf91be344a}\label{class_e_x_a_m_m_a7bbe9fdf1c7385c055b89fcf91be344a}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries generate\+\_\+for\+\_\+transfer\+\_\+learning} (\textbf{ string} file\+\_\+name, int extra\+\_\+inputs, int extra\+\_\+outputs)
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_aa079110bb4851d500353e50603098ff8}\label{class_e_x_a_m_m_aa079110bb4851d500353e50603098ff8}} 
+void {\bfseries check\+\_\+weight\+\_\+initialize\+\_\+validity} ()
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a484f9db7741fbeb220562e547eb52295}\label{class_e_x_a_m_m_a484f9db7741fbeb220562e547eb52295}} 
+int32\+\_\+t {\bfseries population\+\_\+size}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a0d131ef4be4ce8eb6cf26928a50b339d}\label{class_e_x_a_m_m_a0d131ef4be4ce8eb6cf26928a50b339d}} 
+int32\+\_\+t {\bfseries number\+\_\+islands}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a333cfbb8e95c9f8f8e04132469809670}\label{class_e_x_a_m_m_a333cfbb8e95c9f8f8e04132469809670}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ $>$ $>$ {\bfseries genomes}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_aeba31aef7fc9e9cd0e0352f817564fea}\label{class_e_x_a_m_m_aeba31aef7fc9e9cd0e0352f817564fea}} 
+int32\+\_\+t {\bfseries max\+\_\+genomes}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a3a6adb05377e0575d2ddc5b306310bf0}\label{class_e_x_a_m_m_a3a6adb05377e0575d2ddc5b306310bf0}} 
+int32\+\_\+t {\bfseries total\+\_\+bp\+\_\+epochs}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ab0a89db7d6ec3cfcff466495b09473d9}\label{class_e_x_a_m_m_ab0a89db7d6ec3cfcff466495b09473d9}} 
+int32\+\_\+t {\bfseries extinction\+\_\+event\+\_\+generation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a514b2a26b5de5a5b65c1e52e91b5204e}\label{class_e_x_a_m_m_a514b2a26b5de5a5b65c1e52e91b5204e}} 
+\textbf{ string} {\bfseries island\+\_\+ranking\+\_\+method}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a800b29f78aa4f81fd4b7208b0f91d144}\label{class_e_x_a_m_m_a800b29f78aa4f81fd4b7208b0f91d144}} 
+\textbf{ string} {\bfseries speciation\+\_\+method}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_aa7da68d2505e066e5cf0d5cc86278984}\label{class_e_x_a_m_m_aa7da68d2505e066e5cf0d5cc86278984}} 
+\textbf{ string} {\bfseries repopulation\+\_\+method}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a14a1db987175b6c9ae5a9ccabdb3de09}\label{class_e_x_a_m_m_a14a1db987175b6c9ae5a9ccabdb3de09}} 
+int32\+\_\+t {\bfseries repopulation\+\_\+mutations}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a9191e3d50d547a989cfa991bf5642dbb}\label{class_e_x_a_m_m_a9191e3d50d547a989cfa991bf5642dbb}} 
+bool {\bfseries repeat\+\_\+extinction}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_adad5ab744a0cd4ef16932e97c9f2c736}\label{class_e_x_a_m_m_adad5ab744a0cd4ef16932e97c9f2c736}} 
+\mbox{\hyperlink{class_speciation_strategy}{Speciation\+Strategy}} $\ast$ {\bfseries speciation\+\_\+strategy}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a686d89db5d70648447f124aefaaa05eb}\label{class_e_x_a_m_m_a686d89db5d70648447f124aefaaa05eb}} 
+double {\bfseries species\+\_\+threshold}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a29eb789be88cc49b7355378ec23ba2e1}\label{class_e_x_a_m_m_a29eb789be88cc49b7355378ec23ba2e1}} 
+double {\bfseries fitness\+\_\+threshold}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af9de69d98c5eedd108c8e98f42a80801}\label{class_e_x_a_m_m_af9de69d98c5eedd108c8e98f42a80801}} 
+double {\bfseries neat\+\_\+c1}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ade22ef3e79195e273731bdaa469d172d}\label{class_e_x_a_m_m_ade22ef3e79195e273731bdaa469d172d}} 
+double {\bfseries neat\+\_\+c2}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ab8f06eee79de903077e623c036a618b0}\label{class_e_x_a_m_m_ab8f06eee79de903077e623c036a618b0}} 
+double {\bfseries neat\+\_\+c3}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af65c12c7da090b34a9ee1fb2820c881c}\label{class_e_x_a_m_m_af65c12c7da090b34a9ee1fb2820c881c}} 
+int32\+\_\+t {\bfseries edge\+\_\+innovation\+\_\+count}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a73b2ab576001cd4dbc68a7f85e5d010b}\label{class_e_x_a_m_m_a73b2ab576001cd4dbc68a7f85e5d010b}} 
+int32\+\_\+t {\bfseries node\+\_\+innovation\+\_\+count}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ae87d5ff7f1c0741b5b63c8f3e13cb6c1}\label{class_e_x_a_m_m_ae87d5ff7f1c0741b5b63c8f3e13cb6c1}} 
+\textbf{ map}$<$ \textbf{ string}, int32\+\_\+t $>$ {\bfseries inserted\+\_\+from\+\_\+map}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a038e0d921ba95959bc1ba3e2597d2278}\label{class_e_x_a_m_m_a038e0d921ba95959bc1ba3e2597d2278}} 
+\textbf{ map}$<$ \textbf{ string}, int32\+\_\+t $>$ {\bfseries generated\+\_\+from\+\_\+map}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a82e7a9bb676cd8e50c674ea327ae0105}\label{class_e_x_a_m_m_a82e7a9bb676cd8e50c674ea327ae0105}} 
+int32\+\_\+t {\bfseries number\+\_\+inputs}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a976f696e48c644ac8ca4db0564c68fae}\label{class_e_x_a_m_m_a976f696e48c644ac8ca4db0564c68fae}} 
+int32\+\_\+t {\bfseries number\+\_\+outputs}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af728315e072eff293edf414463cfa8ee}\label{class_e_x_a_m_m_af728315e072eff293edf414463cfa8ee}} 
+int32\+\_\+t {\bfseries bp\+\_\+iterations}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a8f4526ee7f5025ddfd3c3e8508d35a31}\label{class_e_x_a_m_m_a8f4526ee7f5025ddfd3c3e8508d35a31}} 
+double {\bfseries learning\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a523b65221a3c6a12109566d546ca8eb4}\label{class_e_x_a_m_m_a523b65221a3c6a12109566d546ca8eb4}} 
+bool {\bfseries use\+\_\+high\+\_\+threshold}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ad5f96a3f30dacb0a07bc9a36b4d14587}\label{class_e_x_a_m_m_ad5f96a3f30dacb0a07bc9a36b4d14587}} 
+double {\bfseries high\+\_\+threshold}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ae14437846948541c0fb7858b28902b2d}\label{class_e_x_a_m_m_ae14437846948541c0fb7858b28902b2d}} 
+bool {\bfseries use\+\_\+low\+\_\+threshold}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a695ffdd5e759e6c9d9871e4ef062a71b}\label{class_e_x_a_m_m_a695ffdd5e759e6c9d9871e4ef062a71b}} 
+double {\bfseries low\+\_\+threshold}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a86f61e92b5f305b6fd5d0a97525c65c3}\label{class_e_x_a_m_m_a86f61e92b5f305b6fd5d0a97525c65c3}} 
+bool {\bfseries use\+\_\+regression}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_afd4fa3e5efd0e9cb766c9231d8171346}\label{class_e_x_a_m_m_afd4fa3e5efd0e9cb766c9231d8171346}} 
+bool {\bfseries use\+\_\+dropout}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af6f7f042753a4558c725cdd9f908387d}\label{class_e_x_a_m_m_af6f7f042753a4558c725cdd9f908387d}} 
+double {\bfseries dropout\+\_\+probability}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a52f1620736849808b77c6cdfbbbc1eb2}\label{class_e_x_a_m_m_a52f1620736849808b77c6cdfbbbc1eb2}} 
+\textbf{ minstd\+\_\+rand0} {\bfseries generator}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a736bad0d6f9fa49ab69cf04f7a22e719}\label{class_e_x_a_m_m_a736bad0d6f9fa49ab69cf04f7a22e719}} 
+\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ {\bfseries rng\+\_\+0\+\_\+1}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_adc21cb4fdd3a8b8e6c563cfe51680809}\label{class_e_x_a_m_m_adc21cb4fdd3a8b8e6c563cfe51680809}} 
+\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ {\bfseries rng\+\_\+crossover\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a8286ca108523787eb1600809c5e83a44}\label{class_e_x_a_m_m_a8286ca108523787eb1600809c5e83a44}} 
+int32\+\_\+t {\bfseries min\+\_\+recurrent\+\_\+depth}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_abada195a47a6b78f2854937503dec80a}\label{class_e_x_a_m_m_abada195a47a6b78f2854937503dec80a}} 
+int32\+\_\+t {\bfseries max\+\_\+recurrent\+\_\+depth}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a8f098192b53805162bb0d1bdf9bbf35d}\label{class_e_x_a_m_m_a8f098192b53805162bb0d1bdf9bbf35d}} 
+bool {\bfseries epigenetic\+\_\+weights}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a84cb33ac5b43b633888ef5f75a47b3e3}\label{class_e_x_a_m_m_a84cb33ac5b43b633888ef5f75a47b3e3}} 
+double {\bfseries more\+\_\+fit\+\_\+crossover\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_aaa95489eda646a34c816ab9f406e621c}\label{class_e_x_a_m_m_aaa95489eda646a34c816ab9f406e621c}} 
+double {\bfseries less\+\_\+fit\+\_\+crossover\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a827faaa986b2d591d34fd0f424770baa}\label{class_e_x_a_m_m_a827faaa986b2d591d34fd0f424770baa}} 
+double {\bfseries clone\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af811390efbd47f3e351d6ff5ba80359b}\label{class_e_x_a_m_m_af811390efbd47f3e351d6ff5ba80359b}} 
+double {\bfseries add\+\_\+edge\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a1ae178e015d9f5bedf3bf3fa0612cc46}\label{class_e_x_a_m_m_a1ae178e015d9f5bedf3bf3fa0612cc46}} 
+double {\bfseries add\+\_\+recurrent\+\_\+edge\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_abd9f2255296d2b27da1daa630ae03468}\label{class_e_x_a_m_m_abd9f2255296d2b27da1daa630ae03468}} 
+double {\bfseries enable\+\_\+edge\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a65f2a5d6b82b598400b45fd7d36ec5ae}\label{class_e_x_a_m_m_a65f2a5d6b82b598400b45fd7d36ec5ae}} 
+double {\bfseries disable\+\_\+edge\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ac1e7ce6ba10c3e7e55e033aea5ee8c8f}\label{class_e_x_a_m_m_ac1e7ce6ba10c3e7e55e033aea5ee8c8f}} 
+double {\bfseries split\+\_\+edge\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a14dda5bb350c0b577fe5eaccdcf0c27d}\label{class_e_x_a_m_m_a14dda5bb350c0b577fe5eaccdcf0c27d}} 
+double {\bfseries add\+\_\+node\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ad0ca4fa9b18313a353f79037a61abd25}\label{class_e_x_a_m_m_ad0ca4fa9b18313a353f79037a61abd25}} 
+double {\bfseries enable\+\_\+node\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a401b1c9cd83e67aa903444fac445aa73}\label{class_e_x_a_m_m_a401b1c9cd83e67aa903444fac445aa73}} 
+double {\bfseries disable\+\_\+node\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af6796f889761d669e40e4ca0594bc35e}\label{class_e_x_a_m_m_af6796f889761d669e40e4ca0594bc35e}} 
+double {\bfseries split\+\_\+node\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a16705344fd24daac4e32c71378732e43}\label{class_e_x_a_m_m_a16705344fd24daac4e32c71378732e43}} 
+double {\bfseries merge\+\_\+node\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a7168959e8a00a01a0685efdbdf12b69f}\label{class_e_x_a_m_m_a7168959e8a00a01a0685efdbdf12b69f}} 
+\textbf{ vector}$<$ int $>$ {\bfseries possible\+\_\+node\+\_\+types}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_aaa892b6fb59c969da5b2692a71f1c0be}\label{class_e_x_a_m_m_aaa892b6fb59c969da5b2692a71f1c0be}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries op\+\_\+log\+\_\+ordering}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a3c123b0e57634c8fd5c9579c646ff246}\label{class_e_x_a_m_m_a3c123b0e57634c8fd5c9579c646ff246}} 
+\textbf{ map}$<$ \textbf{ string}, int32\+\_\+t $>$ {\bfseries inserted\+\_\+counts}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_aa80c7e4ac359e29d3598de579d2e3955}\label{class_e_x_a_m_m_aa80c7e4ac359e29d3598de579d2e3955}} 
+\textbf{ map}$<$ \textbf{ string}, int32\+\_\+t $>$ {\bfseries generated\+\_\+counts}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ae90d743c11e1caf3bcec50a0f047500f}\label{class_e_x_a_m_m_ae90d743c11e1caf3bcec50a0f047500f}} 
+\textbf{ string} {\bfseries output\+\_\+directory}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a96cad2561f2de297758077cb2073eb01}\label{class_e_x_a_m_m_a96cad2561f2de297758077cb2073eb01}} 
+\textbf{ ofstream} $\ast$ {\bfseries log\+\_\+file}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a013871c8b00cc0b0c2bafc2a9e3430bf}\label{class_e_x_a_m_m_a013871c8b00cc0b0c2bafc2a9e3430bf}} 
+\textbf{ ofstream} $\ast$ {\bfseries op\+\_\+log\+\_\+file}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_aa27aa494864eb7d644d1a9a40e46b296}\label{class_e_x_a_m_m_aa27aa494864eb7d644d1a9a40e46b296}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries input\+\_\+parameter\+\_\+names}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a1e8eda421e0f5b6657fc1de1f3aab061}\label{class_e_x_a_m_m_a1e8eda421e0f5b6657fc1de1f3aab061}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries output\+\_\+parameter\+\_\+names}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_aac15f2d814d064d532654163bdfe59b7}\label{class_e_x_a_m_m_aac15f2d814d064d532654163bdfe59b7}} 
+\textbf{ string} {\bfseries normalize\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af6c66967a76ab7fec38d51f58ee16c23}\label{class_e_x_a_m_m_af6c66967a76ab7fec38d51f58ee16c23}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+mins}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_adca5b3f12b8a76084bf33ff1d1f6bb86}\label{class_e_x_a_m_m_adca5b3f12b8a76084bf33ff1d1f6bb86}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+maxs}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ab79d11a8a1de85eda433c2f2b113d76f}\label{class_e_x_a_m_m_ab79d11a8a1de85eda433c2f2b113d76f}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+avgs}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a5d5c51686b6a4c29d7dde79cc1f672e3}\label{class_e_x_a_m_m_a5d5c51686b6a4c29d7dde79cc1f672e3}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+std\+\_\+devs}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_ac3c271a84c7011a8f497d0aafc99abe3}\label{class_e_x_a_m_m_ac3c271a84c7011a8f497d0aafc99abe3}} 
+Weight\+Type {\bfseries weight\+\_\+initialize}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a6bbec074d37309ed972e79e533881495}\label{class_e_x_a_m_m_a6bbec074d37309ed972e79e533881495}} 
+Weight\+Type {\bfseries weight\+\_\+inheritance}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a7910e24ff2f54bc8dc8473e5008df2a7}\label{class_e_x_a_m_m_a7910e24ff2f54bc8dc8473e5008df2a7}} 
+Weight\+Type {\bfseries mutated\+\_\+component\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af5137255c6f1d41f20d85a81f00e17e0}\label{class_e_x_a_m_m_af5137255c6f1d41f20d85a81f00e17e0}} 
+\textbf{ ostringstream} {\bfseries memory\+\_\+log}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_a4372a02836f005b24e05d2625cdb9a94}\label{class_e_x_a_m_m_a4372a02836f005b24e05d2625cdb9a94}} 
+\textbf{ std\+::chrono\+::time\+\_\+point}$<$ \textbf{ std\+::chrono\+::system\+\_\+clock} $>$ {\bfseries start\+Clock}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af3f2803027dace8f58cc1de4108a5969}\label{class_e_x_a_m_m_af3f2803027dace8f58cc1de4108a5969}} 
+\textbf{ string} {\bfseries genome\+\_\+file\+\_\+name}
+\item 
+\mbox{\Hypertarget{class_e_x_a_m_m_af769d270e5f7e8f1e7318b085a2ccef6}\label{class_e_x_a_m_m_af769d270e5f7e8f1e7318b085a2ccef6}} 
+bool {\bfseries start\+\_\+filled}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/examm.\+hxx\item 
+rnn/examm.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_g_r_u___node.eps b/docs/latex/class_g_r_u___node.eps
new file mode 100644
index 00000000..56861fd8
--- /dev/null
+++ b/docs/latex/class_g_r_u___node.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 285.714286
+%%Pages: 0
+%%BeginSetup
+%%EndSetup
+%%EndComments
+
+% ----- variables -----
+
+/boxwidth 0 def
+/boxheight 40 def
+/fontheight 24 def
+/marginwidth 10 def
+/distx 20 def
+/disty 40 def
+/boundaspect 1.750000 def  % aspect ratio of the BoundingBox (width/height)
+/boundx 500 def
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+/xspacing 0 def
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+/boxfont /Times-Roman findfont fontheight scalefont def
+
+% ----- procedures -----
+
+/dotted { [1 4] 0 setdash } def
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+/solid  { [] 0 setdash } def
+
+/max % result = MAX(arg1,arg2)
+{
+  /a exch def
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+  a b gt {a} {b} ifelse
+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
+} def
+
+/box % draws a box with text 'arg1' at grid pos (arg2,arg3)
+{ gsave
+  2 setlinewidth
+  newpath
+  exch xspacing mul xoffset add
+  exch yspacing mul
+  moveto
+  boxwidth 0 rlineto 
+  0 boxheight rlineto 
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+  0 boxheight neg rlineto 
+  closepath
+  dup stringwidth pop neg boxwidth add 2 div
+  boxheight fontheight 2 div sub 2 div
+  rmoveto show stroke
+  grestore
+} def  
+
+/mark
+{ newpath
+  exch xspacing mul xoffset add boxwidth add
+  exch yspacing mul
+  moveto
+  0 boxheight 4 div rlineto
+  boxheight neg 4 div boxheight neg 4 div rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/arrow
+{ newpath
+  moveto
+  3 -8 rlineto
+  -6 0 rlineto
+  3 8 rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/out % draws an output connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight add
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/in % draws an input connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul disty 2 div sub
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/hedge
+{
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight 2 div sub
+  /y exch def
+  /x exch def
+  newpath
+  x y moveto
+  boxwidth 2 div distx add 0 rlineto
+  stroke
+  1 eq
+  { newpath x boxwidth 2 div distx add add y moveto
+    -8 3 rlineto
+    0 -6 rlineto
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+    stroke
+  } if
+} def
+
+/vedge
+{
+  /ye exch def
+  /ys exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add dup
+  ys yspacing mul boxheight 2 div sub
+  moveto
+  ye yspacing mul boxheight 2 div sub
+  lineto
+  stroke
+} def
+
+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
+  moveto
+  xspacing xe xs sub mul 0
+  rlineto
+  stroke
+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(GRU_Node) cw
+(RNN_Node_Interface) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (GRU_Node) 0.000000 0.000000 box
+ (RNN_Node_Interface) 0.000000 1.000000 box
+
+% ----- relations -----
+
+solid
+0 0.000000 0.000000 out
+solid
+1 0.000000 1.000000 in
diff --git a/docs/latex/class_g_r_u___node.tex b/docs/latex/class_g_r_u___node.tex
new file mode 100644
index 00000000..2b8f3c6e
--- /dev/null
+++ b/docs/latex/class_g_r_u___node.tex
@@ -0,0 +1,162 @@
+\hypertarget{class_g_r_u___node}{}\doxysection{G\+R\+U\+\_\+\+Node Class Reference}
+\label{class_g_r_u___node}\index{GRU\_Node@{GRU\_Node}}
+Inheritance diagram for G\+R\+U\+\_\+\+Node\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_g_r_u___node}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a9290627eb7f65f0a817166fc9a83deaf}\label{class_g_r_u___node_a9290627eb7f65f0a817166fc9a83deaf}} 
+{\bfseries G\+R\+U\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+type, double \+\_\+depth)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a6276428b8f55291b39827fad7c13c568}\label{class_g_r_u___node_a6276428b8f55291b39827fad7c13c568}} 
+void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a59a18ab71467975aad4f6b50fc8c033c}\label{class_g_r_u___node_a59a18ab71467975aad4f6b50fc8c033c}} 
+void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng1\+\_\+1, double range)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a4df65c67bf73824f7c0b4a5f141c2925}\label{class_g_r_u___node_a4df65c67bf73824f7c0b4a5f141c2925}} 
+void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a8acb6dac67ef6265dce246020c505092}\label{class_g_r_u___node_a8acb6dac67ef6265dce246020c505092}} 
+void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a7d2c49b8a815898f193ed62d24cc059a}\label{class_g_r_u___node_a7d2c49b8a815898f193ed62d24cc059a}} 
+double {\bfseries get\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a750f2894c1e9cde9c2e4cf1799950dbd}\label{class_g_r_u___node_a750f2894c1e9cde9c2e4cf1799950dbd}} 
+void {\bfseries print\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a2626d54382771db603ee92bdb0edb623}\label{class_g_r_u___node_a2626d54382771db603ee92bdb0edb623}} 
+void {\bfseries input\+\_\+fired} (int time, double incoming\+\_\+output)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a4741a9a2b0524e5eeb4da5588bfa4878}\label{class_g_r_u___node_a4741a9a2b0524e5eeb4da5588bfa4878}} 
+void {\bfseries try\+\_\+update\+\_\+deltas} (int time)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a4c088bf430f95e1e1a309ad49e4d0e88}\label{class_g_r_u___node_a4c088bf430f95e1e1a309ad49e4d0e88}} 
+void {\bfseries error\+\_\+fired} (int time, double error)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_af8a4d1b2158cf5abd5ff0fd19cdb8f52}\label{class_g_r_u___node_af8a4d1b2158cf5abd5ff0fd19cdb8f52}} 
+void {\bfseries output\+\_\+fired} (int time, double delta)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a8c618720c3ebd3220698495867c7918e}\label{class_g_r_u___node_a8c618720c3ebd3220698495867c7918e}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_acff5bfeb130f64e47ac92f1f6f35ea68}\label{class_g_r_u___node_acff5bfeb130f64e47ac92f1f6f35ea68}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a7a98506b58b829ef58531fd042ffecde}\label{class_g_r_u___node_a7a98506b58b829ef58531fd042ffecde}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_ad80f886343ea7ce8474b07f82a4c90b7}\label{class_g_r_u___node_ad80f886343ea7ce8474b07f82a4c90b7}} 
+void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a2ed0b01e09a7f4b0fe40375b3a18e57b}\label{class_g_r_u___node_a2ed0b01e09a7f4b0fe40375b3a18e57b}} 
+void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a875ecae1dfd8ca7a73260db90981f59f}\label{class_g_r_u___node_a875ecae1dfd8ca7a73260db90981f59f}} 
+void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a4c99a90aafead390cfa5f28b49d103f5}\label{class_g_r_u___node_a4c99a90aafead390cfa5f28b49d103f5}} 
+void {\bfseries reset} (int \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a17025c5da3d8f8a4b3852ebf51c1ec56}\label{class_g_r_u___node_a17025c5da3d8f8a4b3852ebf51c1ec56}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a8e6614d26cafdb1b54809194cf99039d}\label{class_g_r_u___node_a8e6614d26cafdb1b54809194cf99039d}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_adfda8cf730509abc7be08aaa5eece7c8}\label{class_g_r_u___node_adfda8cf730509abc7be08aaa5eece7c8}} 
+double {\bfseries zw}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a0681570d4c2eb97b148fc09652351c3b}\label{class_g_r_u___node_a0681570d4c2eb97b148fc09652351c3b}} 
+double {\bfseries zu}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_ae40e512f1fa08d0ac1d786ba0b9c4e1d}\label{class_g_r_u___node_ae40e512f1fa08d0ac1d786ba0b9c4e1d}} 
+double {\bfseries z\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a7f83e2f0370545f9fa9fdeed2641663e}\label{class_g_r_u___node_a7f83e2f0370545f9fa9fdeed2641663e}} 
+double {\bfseries rw}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a21d746b030090ad6cc58990af3f5c84b}\label{class_g_r_u___node_a21d746b030090ad6cc58990af3f5c84b}} 
+double {\bfseries ru}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a88f13121e1bd3f6405dd1e351e74df32}\label{class_g_r_u___node_a88f13121e1bd3f6405dd1e351e74df32}} 
+double {\bfseries r\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a92916dfb0c9a09c1d9b489a4b6d502f1}\label{class_g_r_u___node_a92916dfb0c9a09c1d9b489a4b6d502f1}} 
+double {\bfseries hw}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a62fd634e0fdad504d25d79ddbf1e8c19}\label{class_g_r_u___node_a62fd634e0fdad504d25d79ddbf1e8c19}} 
+double {\bfseries hu}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a213aa84800bae687954e45cb2d4ee740}\label{class_g_r_u___node_a213aa84800bae687954e45cb2d4ee740}} 
+double {\bfseries h\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_ae9c001b84a7e2bdb50be16b3a8d9b5cd}\label{class_g_r_u___node_ae9c001b84a7e2bdb50be16b3a8d9b5cd}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+zw}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a959cb5095ecfe19bbecf337bb2f6067c}\label{class_g_r_u___node_a959cb5095ecfe19bbecf337bb2f6067c}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+zu}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a3d5b01282977ff8c7d829d493746a018}\label{class_g_r_u___node_a3d5b01282977ff8c7d829d493746a018}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+z\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_ac0a8249393c540d37e2a688e90297f93}\label{class_g_r_u___node_ac0a8249393c540d37e2a688e90297f93}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+rw}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a23ea806db494beac6d543b9c663ef983}\label{class_g_r_u___node_a23ea806db494beac6d543b9c663ef983}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+ru}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_aa72325a1ebfe041b9c59f5d82b012d1c}\label{class_g_r_u___node_aa72325a1ebfe041b9c59f5d82b012d1c}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+r\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a0be3f045d49a8e5d0e49fa82aca34c27}\label{class_g_r_u___node_a0be3f045d49a8e5d0e49fa82aca34c27}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+hw}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a7120f96783cc01048a3ced5ed14cb328}\label{class_g_r_u___node_a7120f96783cc01048a3ced5ed14cb328}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+hu}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a80a58648994dcbfb96b0b08eb59af26c}\label{class_g_r_u___node_a80a58648994dcbfb96b0b08eb59af26c}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+h\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_aee14707bf605402f11aa4c5d70f26064}\label{class_g_r_u___node_aee14707bf605402f11aa4c5d70f26064}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+h\+\_\+prev}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a1a07fb4eeb68aa877191a7fa84719a8c}\label{class_g_r_u___node_a1a07fb4eeb68aa877191a7fa84719a8c}} 
+\textbf{ vector}$<$ double $>$ {\bfseries z}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a18dec99edc33a59b20bcfdb56f3f3b61}\label{class_g_r_u___node_a18dec99edc33a59b20bcfdb56f3f3b61}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+z}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a7ce42080b2c04b8ba839c2b9247be546}\label{class_g_r_u___node_a7ce42080b2c04b8ba839c2b9247be546}} 
+\textbf{ vector}$<$ double $>$ {\bfseries r}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_aa91cab5d6d2d591df54de73fe828f61d}\label{class_g_r_u___node_aa91cab5d6d2d591df54de73fe828f61d}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+r}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_ab382c6061700a43df3d6a1ae1ef476b0}\label{class_g_r_u___node_ab382c6061700a43df3d6a1ae1ef476b0}} 
+\textbf{ vector}$<$ double $>$ {\bfseries h\+\_\+tanh}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a2a820bf16d1e4f0853e56274eeec028f}\label{class_g_r_u___node_a2a820bf16d1e4f0853e56274eeec028f}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+h\+\_\+tanh}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_g_r_u___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_g_r_u___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\end{DoxyCompactItemize}
+\doxysubsection*{Additional Inherited Members}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/gru\+\_\+node.\+hxx\item 
+rnn/gru\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_image.eps b/docs/latex/class_image.eps
new file mode 100644
index 00000000..67439f9f
--- /dev/null
+++ b/docs/latex/class_image.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 388.349515
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+% ----- variables -----
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+/max % result = MAX(arg1,arg2)
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+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
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+
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+{ gsave
+  2 setlinewidth
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+{
+  newpath
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+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
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+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(Image) cw
+(ImageInterface) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
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+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (Image) 0.000000 0.000000 box
+ (ImageInterface) 0.000000 1.000000 box
+
+% ----- relations -----
+
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diff --git a/docs/latex/class_image.tex b/docs/latex/class_image.tex
new file mode 100644
index 00000000..a7b5137c
--- /dev/null
+++ b/docs/latex/class_image.tex
@@ -0,0 +1,68 @@
+\hypertarget{class_image}{}\doxysection{Image Class Reference}
+\label{class_image}\index{Image@{Image}}
+Inheritance diagram for Image\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_image}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_image_a00263b59b18cd105c6ec282f76fd499a}\label{class_image_a00263b59b18cd105c6ec282f76fd499a}} 
+{\bfseries Image} (\textbf{ ifstream} \&infile, int \+\_\+channels, int \+\_\+width, int \+\_\+height, int \+\_\+padding, int \+\_\+classification, const \mbox{\hyperlink{class_images}{Images}} $\ast$\+\_\+images)
+\item 
+\mbox{\Hypertarget{class_image_ae35418c50cee043b8f24d75d0d5c125d}\label{class_image_ae35418c50cee043b8f24d75d0d5c125d}} 
+int {\bfseries get\+\_\+classification} () const
+\item 
+\mbox{\Hypertarget{class_image_a48a37444c7bf67df9b0345ce5643f7e7}\label{class_image_a48a37444c7bf67df9b0345ce5643f7e7}} 
+void {\bfseries scale\+\_\+0\+\_\+1} ()
+\item 
+\mbox{\Hypertarget{class_image_a4075190e36763e3bd418de444692f413}\label{class_image_a4075190e36763e3bd418de444692f413}} 
+float {\bfseries get\+\_\+pixel} (int z, int y, int x) const
+\item 
+\mbox{\Hypertarget{class_image_a20dc44298e59932e7eb7815d689ddf41}\label{class_image_a20dc44298e59932e7eb7815d689ddf41}} 
+void {\bfseries get\+\_\+pixel\+\_\+avg} (\textbf{ vector}$<$ float $>$ \&channel\+\_\+avgs) const
+\item 
+\mbox{\Hypertarget{class_image_a77d042408cb32c534d9d290861269574}\label{class_image_a77d042408cb32c534d9d290861269574}} 
+void {\bfseries get\+\_\+pixel\+\_\+variance} (const \textbf{ vector}$<$ float $>$ \&channel\+\_\+avgs, \textbf{ vector}$<$ float $>$ \&channel\+\_\+variances) const
+\item 
+\mbox{\Hypertarget{class_image_adb6a48efc25c7c12df5984c578e131d7}\label{class_image_adb6a48efc25c7c12df5984c578e131d7}} 
+void {\bfseries print} (\textbf{ ostream} \&out)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_image_a3378bec385533755ab2877c8e552e36e}\label{class_image_a3378bec385533755ab2877c8e552e36e}} 
+int {\bfseries padding}
+\item 
+\mbox{\Hypertarget{class_image_a73572ed4b7f15054c5a598c6aabffd86}\label{class_image_a73572ed4b7f15054c5a598c6aabffd86}} 
+int {\bfseries channels}
+\item 
+\mbox{\Hypertarget{class_image_a51df43db420c9c0b57536cb2dd36de5c}\label{class_image_a51df43db420c9c0b57536cb2dd36de5c}} 
+int {\bfseries height}
+\item 
+\mbox{\Hypertarget{class_image_ab8d12f635013c04159cd4d3d972bac88}\label{class_image_ab8d12f635013c04159cd4d3d972bac88}} 
+int {\bfseries width}
+\item 
+\mbox{\Hypertarget{class_image_afffa25f14f8c9aca3e6014c71fb33937}\label{class_image_afffa25f14f8c9aca3e6014c71fb33937}} 
+int {\bfseries classification}
+\item 
+\mbox{\Hypertarget{class_image_a42870ee0359c95f19672220f40c02ade}\label{class_image_a42870ee0359c95f19672220f40c02ade}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ uint8\+\_\+t $>$ $>$ $>$ {\bfseries pixels}
+\item 
+\mbox{\Hypertarget{class_image_af8e17e1591540036cbd27ee309df7cff}\label{class_image_af8e17e1591540036cbd27ee309df7cff}} 
+const \mbox{\hyperlink{class_images}{Images}} $\ast$ {\bfseries images}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_image_a29a8da4b8508c35f965394bec8b4af16}\label{class_image_a29a8da4b8508c35f965394bec8b4af16}} 
+class {\bfseries Images}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/image\+\_\+set.\+hxx\item 
+image\+\_\+tools/image\+\_\+set.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_image_interface.eps b/docs/latex/class_image_interface.eps
new file mode 100644
index 00000000..1bfddb17
--- /dev/null
+++ b/docs/latex/class_image_interface.eps
@@ -0,0 +1,203 @@
+%!PS-Adobe-2.0 EPSF-2.0
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+
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+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
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+(LargeImage) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
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+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (ImageInterface) 0.500000 1.000000 box
+ (Image) 0.000000 0.000000 box
+ (LargeImage) 1.000000 0.000000 box
+
+% ----- relations -----
+
+solid
+1 0.500000 0.250000 out
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diff --git a/docs/latex/class_image_interface.tex b/docs/latex/class_image_interface.tex
new file mode 100644
index 00000000..6a55e10a
--- /dev/null
+++ b/docs/latex/class_image_interface.tex
@@ -0,0 +1,23 @@
+\hypertarget{class_image_interface}{}\doxysection{Image\+Interface Class Reference}
+\label{class_image_interface}\index{ImageInterface@{ImageInterface}}
+Inheritance diagram for Image\+Interface\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_image_interface}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_image_interface_a8185d7f7ef306f65f833b1045fc6f17e}\label{class_image_interface_a8185d7f7ef306f65f833b1045fc6f17e}} 
+virtual int {\bfseries get\+\_\+classification} () const =0
+\item 
+\mbox{\Hypertarget{class_image_interface_a9eec1a62dae9f3aad32046fbf47ad601}\label{class_image_interface_a9eec1a62dae9f3aad32046fbf47ad601}} 
+virtual void {\bfseries print} (\textbf{ ostream} \&out)=0
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/image\+\_\+set\+\_\+interface.\+hxx\item 
+image\+\_\+tools/large\+\_\+image\+\_\+set.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_images.eps b/docs/latex/class_images.eps
new file mode 100644
index 00000000..76d4416a
--- /dev/null
+++ b/docs/latex/class_images.eps
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+%!PS-Adobe-2.0 EPSF-2.0
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+%%Pages: 0
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+% ----- procedures -----
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+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
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+  /str exch def
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+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(Images) cw
+(ImagesInterface) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
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+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (Images) 0.000000 0.000000 box
+ (ImagesInterface) 0.000000 1.000000 box
+
+% ----- relations -----
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diff --git a/docs/latex/class_images.tex b/docs/latex/class_images.tex
new file mode 100644
index 00000000..00cbe7d4
--- /dev/null
+++ b/docs/latex/class_images.tex
@@ -0,0 +1,110 @@
+\hypertarget{class_images}{}\doxysection{Images Class Reference}
+\label{class_images}\index{Images@{Images}}
+Inheritance diagram for Images\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_images}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_images_a9d399faae60bbf9104dfdf64e2acfef1}\label{class_images_a9d399faae60bbf9104dfdf64e2acfef1}} 
+int {\bfseries read\+\_\+images} (\textbf{ string} binary\+\_\+filename)
+\item 
+\mbox{\Hypertarget{class_images_a63e020cd282310d87bc7b299b14dfc50}\label{class_images_a63e020cd282310d87bc7b299b14dfc50}} 
+{\bfseries Images} (\textbf{ string} binary\+\_\+filename, int \+\_\+padding)
+\item 
+\mbox{\Hypertarget{class_images_aa47b6fec71913825b91b591c4084de82}\label{class_images_aa47b6fec71913825b91b591c4084de82}} 
+{\bfseries Images} (\textbf{ string} binary\+\_\+filename, int \+\_\+padding, const \textbf{ vector}$<$ float $>$ \&\+\_\+channe\+L\+\_\+avg, const \textbf{ vector}$<$ float $>$ \&channel\+\_\+std\+\_\+dev)
+\item 
+\mbox{\Hypertarget{class_images_a909d6de83dc353e9b9cd652396ff654b}\label{class_images_a909d6de83dc353e9b9cd652396ff654b}} 
+\textbf{ string} {\bfseries get\+\_\+filename} () const
+\item 
+\mbox{\Hypertarget{class_images_a72094ddc5c4bc6d130e96a44e698ae1d}\label{class_images_a72094ddc5c4bc6d130e96a44e698ae1d}} 
+int {\bfseries get\+\_\+class\+\_\+size} (int i) const
+\item 
+\mbox{\Hypertarget{class_images_a194730c90f956efc9fa10d51a76a2c96}\label{class_images_a194730c90f956efc9fa10d51a76a2c96}} 
+int {\bfseries get\+\_\+number\+\_\+classes} () const
+\item 
+\mbox{\Hypertarget{class_images_a7274ea0aa64b25606927e292e1a7feec}\label{class_images_a7274ea0aa64b25606927e292e1a7feec}} 
+int {\bfseries get\+\_\+number\+\_\+images} () const
+\item 
+\mbox{\Hypertarget{class_images_a3f7c87e587cc3cd7226858255c91b7ca}\label{class_images_a3f7c87e587cc3cd7226858255c91b7ca}} 
+int {\bfseries get\+\_\+image\+\_\+channels} () const
+\item 
+\mbox{\Hypertarget{class_images_a152be30298d1509d10f6ee51be3fee65}\label{class_images_a152be30298d1509d10f6ee51be3fee65}} 
+int {\bfseries get\+\_\+image\+\_\+width} () const
+\item 
+\mbox{\Hypertarget{class_images_aa6ad2d0286b2140348e247ce35f6ec45}\label{class_images_aa6ad2d0286b2140348e247ce35f6ec45}} 
+int {\bfseries get\+\_\+image\+\_\+height} () const
+\item 
+\mbox{\Hypertarget{class_images_a8563bde202920005b9c28aeab015ebef}\label{class_images_a8563bde202920005b9c28aeab015ebef}} 
+int {\bfseries get\+\_\+classification} (int image) const
+\item 
+\mbox{\Hypertarget{class_images_adec8e3768a8e9cfc42cd966a04a343e4}\label{class_images_adec8e3768a8e9cfc42cd966a04a343e4}} 
+float {\bfseries get\+\_\+pixel} (int image, int z, int y, int x) const
+\item 
+\mbox{\Hypertarget{class_images_a7a849e6fc03f758f8c7f27c7efc89e53}\label{class_images_a7a849e6fc03f758f8c7f27c7efc89e53}} 
+void {\bfseries calculate\+\_\+avg\+\_\+std\+\_\+dev} ()
+\item 
+\mbox{\Hypertarget{class_images_a775524150347fc76ed292285d6f6089e}\label{class_images_a775524150347fc76ed292285d6f6089e}} 
+float {\bfseries get\+\_\+channel\+\_\+avg} (int channel) const
+\item 
+\mbox{\Hypertarget{class_images_ad3069b2400be30a99774cacbc3bc53fc}\label{class_images_ad3069b2400be30a99774cacbc3bc53fc}} 
+float {\bfseries get\+\_\+channel\+\_\+std\+\_\+dev} (int channel) const
+\item 
+\mbox{\Hypertarget{class_images_a5ca7a107de1b4465ee2a8a69fc46975c}\label{class_images_a5ca7a107de1b4465ee2a8a69fc46975c}} 
+bool {\bfseries loaded\+\_\+correctly} () const
+\item 
+\mbox{\Hypertarget{class_images_aea5a7b61eb7ceaa3e7151b474371af5e}\label{class_images_aea5a7b61eb7ceaa3e7151b474371af5e}} 
+const \textbf{ vector}$<$ float $>$ \& {\bfseries get\+\_\+average} () const
+\item 
+\mbox{\Hypertarget{class_images_a1e1cc16fbc25f065dcd9d0019cbe996b}\label{class_images_a1e1cc16fbc25f065dcd9d0019cbe996b}} 
+const \textbf{ vector}$<$ float $>$ \& {\bfseries get\+\_\+std\+\_\+dev} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_images_aeadfc5719508f55f8c59ca0e14405e18}\label{class_images_aeadfc5719508f55f8c59ca0e14405e18}} 
+\textbf{ string} {\bfseries filename}
+\item 
+\mbox{\Hypertarget{class_images_a296b6e987241f10969b59f55f11d6b40}\label{class_images_a296b6e987241f10969b59f55f11d6b40}} 
+int {\bfseries number\+\_\+classes}
+\item 
+\mbox{\Hypertarget{class_images_a354e40904956ddc5034d5471714fec06}\label{class_images_a354e40904956ddc5034d5471714fec06}} 
+int {\bfseries number\+\_\+images}
+\item 
+\mbox{\Hypertarget{class_images_ad2dc57d3d9071b3b71f5263eff9b2340}\label{class_images_ad2dc57d3d9071b3b71f5263eff9b2340}} 
+\textbf{ vector}$<$ int $>$ {\bfseries class\+\_\+sizes}
+\item 
+\mbox{\Hypertarget{class_images_a1bdc541858b398b563120ad63f668dee}\label{class_images_a1bdc541858b398b563120ad63f668dee}} 
+int {\bfseries padding}
+\item 
+\mbox{\Hypertarget{class_images_a8b73593cbd007c65351f007181c9a305}\label{class_images_a8b73593cbd007c65351f007181c9a305}} 
+int {\bfseries channels}
+\item 
+\mbox{\Hypertarget{class_images_a8b5be76a044a2a5fea1defde5f890cc7}\label{class_images_a8b5be76a044a2a5fea1defde5f890cc7}} 
+int {\bfseries width}
+\item 
+\mbox{\Hypertarget{class_images_a744614362ca31b78143cea5914c6bfc3}\label{class_images_a744614362ca31b78143cea5914c6bfc3}} 
+int {\bfseries height}
+\item 
+\mbox{\Hypertarget{class_images_aaccaeb7f13a167d16ecb31806fcb1d59}\label{class_images_aaccaeb7f13a167d16ecb31806fcb1d59}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_image}{Image}} $>$ {\bfseries images}
+\item 
+\mbox{\Hypertarget{class_images_a3ffa1cfdb4d88855ae6c37c3bf19f39c}\label{class_images_a3ffa1cfdb4d88855ae6c37c3bf19f39c}} 
+\textbf{ vector}$<$ float $>$ {\bfseries channel\+\_\+avg}
+\item 
+\mbox{\Hypertarget{class_images_a98034433657ad03b7e6eabaa0c8576c3}\label{class_images_a98034433657ad03b7e6eabaa0c8576c3}} 
+\textbf{ vector}$<$ float $>$ {\bfseries channel\+\_\+std\+\_\+dev}
+\item 
+\mbox{\Hypertarget{class_images_aeadb139b6ea3fbaf594ad9f8e4146e83}\label{class_images_aeadb139b6ea3fbaf594ad9f8e4146e83}} 
+bool {\bfseries had\+\_\+error}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/image\+\_\+set.\+hxx\item 
+image\+\_\+tools/image\+\_\+set.\+cxx\end{DoxyCompactItemize}
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+/vedge
+{
+  /ye exch def
+  /ys exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add dup
+  ys yspacing mul boxheight 2 div sub
+  moveto
+  ye yspacing mul boxheight 2 div sub
+  lineto
+  stroke
+} def
+
+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
+  moveto
+  xspacing xe xs sub mul 0
+  rlineto
+  stroke
+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(ImagesInterface) cw
+(Images) cw
+(MultiImagesInterface) cw
+(LargeImages) cw
+(MosaicImages) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (ImagesInterface) 0.500000 2.000000 box
+ (Images) 0.000000 1.000000 box
+ (MultiImagesInterface) 1.000000 1.000000 box
+ (LargeImages) 0.500000 0.000000 box
+ (MosaicImages) 1.500000 0.000000 box
+
+% ----- relations -----
+
+solid
+1 0.500000 1.250000 out
+solid
+0.000000 1.000000 2.000000 conn
+solid
+0 0.000000 1.750000 in
+solid
+0 1.000000 1.750000 in
+solid
+1 1.000000 0.250000 out
+solid
+0.500000 1.500000 1.000000 conn
+solid
+0 0.500000 0.750000 in
+solid
+0 1.500000 0.750000 in
diff --git a/docs/latex/class_images_interface.tex b/docs/latex/class_images_interface.tex
new file mode 100644
index 00000000..74e31677
--- /dev/null
+++ b/docs/latex/class_images_interface.tex
@@ -0,0 +1,55 @@
+\hypertarget{class_images_interface}{}\doxysection{Images\+Interface Class Reference}
+\label{class_images_interface}\index{ImagesInterface@{ImagesInterface}}
+Inheritance diagram for Images\+Interface\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=3.000000cm]{class_images_interface}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_images_interface_a0e825abe3f7a6c73588e9f78eb734147}\label{class_images_interface_a0e825abe3f7a6c73588e9f78eb734147}} 
+virtual \textbf{ string} {\bfseries get\+\_\+filename} () const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_a74a24a60adadacccd94d9e59f0253a36}\label{class_images_interface_a74a24a60adadacccd94d9e59f0253a36}} 
+virtual int {\bfseries get\+\_\+class\+\_\+size} (int i) const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_a111e4cb4e084287a7320c865090284c6}\label{class_images_interface_a111e4cb4e084287a7320c865090284c6}} 
+virtual int {\bfseries get\+\_\+number\+\_\+classes} () const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_ac70474e1bee638335ca8f2d4783f824f}\label{class_images_interface_ac70474e1bee638335ca8f2d4783f824f}} 
+virtual int {\bfseries get\+\_\+number\+\_\+images} () const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_ab2ca5cd20034b462b6cc4ed9203ac654}\label{class_images_interface_ab2ca5cd20034b462b6cc4ed9203ac654}} 
+virtual int {\bfseries get\+\_\+image\+\_\+channels} () const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_adf3286c20f638a907cc6b8d73ab23935}\label{class_images_interface_adf3286c20f638a907cc6b8d73ab23935}} 
+virtual int {\bfseries get\+\_\+image\+\_\+width} () const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_a912157ee3c4e5bd7ca10788598cd595b}\label{class_images_interface_a912157ee3c4e5bd7ca10788598cd595b}} 
+virtual int {\bfseries get\+\_\+image\+\_\+height} () const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_a3665871dc1f3bc6dd03d80307364d7e8}\label{class_images_interface_a3665871dc1f3bc6dd03d80307364d7e8}} 
+virtual int {\bfseries get\+\_\+classification} (int image) const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_aeae66532b878577d4cd0bf7b4aa10638}\label{class_images_interface_aeae66532b878577d4cd0bf7b4aa10638}} 
+virtual float {\bfseries get\+\_\+pixel} (int image, int z, int y, int x) const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_a97907b0c401fea4c219162e0ad892fd8}\label{class_images_interface_a97907b0c401fea4c219162e0ad892fd8}} 
+virtual float {\bfseries get\+\_\+channel\+\_\+avg} (int channel) const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_a3ecfce3ab205f37273c304be8ea642fb}\label{class_images_interface_a3ecfce3ab205f37273c304be8ea642fb}} 
+virtual float {\bfseries get\+\_\+channel\+\_\+std\+\_\+dev} (int channel) const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_aa449f74e5381d3701697d3f3e92ef164}\label{class_images_interface_aa449f74e5381d3701697d3f3e92ef164}} 
+virtual const \textbf{ vector}$<$ float $>$ \& {\bfseries get\+\_\+average} () const =0
+\item 
+\mbox{\Hypertarget{class_images_interface_a3a26b620cf600922d3572c41d7d43c38}\label{class_images_interface_a3a26b620cf600922d3572c41d7d43c38}} 
+virtual const \textbf{ vector}$<$ float $>$ \& {\bfseries get\+\_\+std\+\_\+dev} () const =0
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/image\+\_\+set\+\_\+interface.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_island.tex b/docs/latex/class_island.tex
new file mode 100644
index 00000000..2560f951
--- /dev/null
+++ b/docs/latex/class_island.tex
@@ -0,0 +1,360 @@
+\hypertarget{class_island}{}\doxysection{Island Class Reference}
+\label{class_island}\index{Island@{Island}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\hyperlink{class_island_a32f068675c8a7f999cb18464d00e8119}{Island}} (int32\+\_\+t \mbox{\hyperlink{class_island_a859a134cc183618af109dd69b85f2955}{id}}, int32\+\_\+t \mbox{\hyperlink{class_island_a5973473a3aad42bec285f02522cacce8}{max\+\_\+size}})
+\begin{DoxyCompactList}\small\item\em Initializes an island with a given max size. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_island_a02fc26cf7fb95d750c501494b855707d}{Island}} (int32\+\_\+t \mbox{\hyperlink{class_island_a859a134cc183618af109dd69b85f2955}{id}}, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ $>$ \mbox{\hyperlink{class_island_a41c1201d69104c49438c97dbc8c93db2}{genomes}})
+\begin{DoxyCompactList}\small\item\em Initializes an island filled the supplied genomes. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_island_aea94baab5d4faa09454131236baf187c}{get\+\_\+best\+\_\+fitness}} ()
+\begin{DoxyCompactList}\small\item\em Returns the fitness of the best genome in the island. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_island_ac135f9b252512f04afcd7f8c2f3f621f}{get\+\_\+worst\+\_\+fitness}} ()
+\begin{DoxyCompactList}\small\item\em Returns the fitness of the worst genome in the island. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_island_abf327f29018863338f4eb351c1f4a2c8}{get\+\_\+best\+\_\+genome}} ()
+\begin{DoxyCompactList}\small\item\em Returns the best genomme in the island. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_island_a2f5d1d504a6bc11d0d63cf9d4bea5a63}{get\+\_\+worst\+\_\+genome}} ()
+\begin{DoxyCompactList}\small\item\em Returns the worst genomme in the island. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_ac5cae801aac1403f3523a7949e415417}{get\+\_\+max\+\_\+size}} ()
+\begin{DoxyCompactList}\small\item\em Returns the maximum number of genomes the island can hold. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_a41f743dc56fa3c26f1e709222416cadf}{size}} ()
+\begin{DoxyCompactList}\small\item\em Returns the size of the island. \end{DoxyCompactList}\item 
+bool \mbox{\hyperlink{class_island_a42a519a1626c5db6004173529a5e2627}{is\+\_\+full}} ()
+\begin{DoxyCompactList}\small\item\em Returns true if the island has \mbox{\hyperlink{class_island_a5973473a3aad42bec285f02522cacce8}{Island\+::max\+\_\+size}} genomes. \end{DoxyCompactList}\item 
+bool \mbox{\hyperlink{class_island_a4d7e730b2c3e9cc53ae3205b1fbe2930}{is\+\_\+initializing}} ()
+\begin{DoxyCompactList}\small\item\em Returns true if the island is initializing, i.\+e., it\textquotesingle{}s size is $<$= max\+\_\+size and it hasn\textquotesingle{}t been cleared out for repopulating. \end{DoxyCompactList}\item 
+bool \mbox{\hyperlink{class_island_a79525b52b34ef3674b837072b5d34d19}{is\+\_\+repopulating}} ()
+\begin{DoxyCompactList}\small\item\em Returns true if the island is repopulating, i.\+e., it\textquotesingle{}s size is $<$= max\+\_\+size and it has been full before but cleared out for repopulation. \end{DoxyCompactList}\item 
+void \mbox{\hyperlink{class_island_a7c3b5331a7ee1dff6206a855e6b5c8b8}{copy\+\_\+random\+\_\+genome}} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$genome)
+\begin{DoxyCompactList}\small\item\em Selects a genome from the island at random and returns a copy of it. \end{DoxyCompactList}\item 
+void \mbox{\hyperlink{class_island_ac49713b90f9110f52c5083540448df8d}{copy\+\_\+two\+\_\+random\+\_\+genomes}} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$genome1, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$genome2)
+\begin{DoxyCompactList}\small\item\em Selects two different genomes from the island at random and returns copies of them. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_af4b7a1caadd05d62d95ae4f6b2e2d378}\label{class_island_af4b7a1caadd05d62d95ae4f6b2e2d378}} 
+void {\bfseries do\+\_\+population\+\_\+check} (int line, int initial\+\_\+size)
+\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_a105174354a7313b3c6520892a3de653e}{insert\+\_\+genome}} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$genome)
+\begin{DoxyCompactList}\small\item\em Inserts a genome into the island. \end{DoxyCompactList}\item 
+void \mbox{\hyperlink{class_island_a9d092c81f7d97c72972dfbdf6fb7cb14}{print}} (\textbf{ string} indent=\char`\"{}\char`\"{})
+\begin{DoxyCompactList}\small\item\em Prints out the state of this island. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_a733a2accb72bce21194747fd3c1ee819}\label{class_island_a733a2accb72bce21194747fd3c1ee819}} 
+void \mbox{\hyperlink{class_island_a733a2accb72bce21194747fd3c1ee819}{erase\+\_\+island}} ()
+\begin{DoxyCompactList}\small\item\em erases the entire island and set the erased\+\_\+generation\+\_\+id. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_acb96603328b5dff91b41470424e7494e}\label{class_island_acb96603328b5dff91b41470424e7494e}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_acb96603328b5dff91b41470424e7494e}{get\+\_\+erased\+\_\+generation\+\_\+id}} ()
+\begin{DoxyCompactList}\small\item\em returns the get\+\_\+erased\+\_\+generation\+\_\+id. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_a8c941beca36c75f2c4fc2fd0d2dfc2c5}{get\+\_\+status}} ()
+\item 
+\mbox{\Hypertarget{class_island_abee9ebff7f0da46fa3dde1718f675689}\label{class_island_abee9ebff7f0da46fa3dde1718f675689}} 
+void \mbox{\hyperlink{class_island_abee9ebff7f0da46fa3dde1718f675689}{set\+\_\+status}} (int32\+\_\+t status\+\_\+to\+\_\+set)
+\begin{DoxyCompactList}\small\item\em after erasing the island, sets the island status to repopulating. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_abb653cd2fc60819a0ab2c204930a7e8a}\label{class_island_abb653cd2fc60819a0ab2c204930a7e8a}} 
+bool \mbox{\hyperlink{class_island_abb653cd2fc60819a0ab2c204930a7e8a}{been\+\_\+erased}} ()
+\begin{DoxyCompactList}\small\item\em return if this island has been erased before. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_a8a6f5c217a58f9a2b58c00372bea85f2}\label{class_island_a8a6f5c217a58f9a2b58c00372bea85f2}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ $>$ {\bfseries get\+\_\+genomes} ()
+\item 
+\mbox{\Hypertarget{class_island_acc95dd5cc774123a9b0a24416d090c95}\label{class_island_acc95dd5cc774123a9b0a24416d090c95}} 
+void {\bfseries set\+\_\+latest\+\_\+generation\+\_\+id} (int32\+\_\+t \+\_\+latest\+\_\+generation\+\_\+id)
+\item 
+\mbox{\Hypertarget{class_island_ab821afe58054f2a256d3bbd5c08fbee0}\label{class_island_ab821afe58054f2a256d3bbd5c08fbee0}} 
+int32\+\_\+t {\bfseries get\+\_\+erase\+\_\+again\+\_\+num} ()
+\item 
+\mbox{\Hypertarget{class_island_ad0d7c02825f98385aa9ff00ef66e20b5}\label{class_island_ad0d7c02825f98385aa9ff00ef66e20b5}} 
+void {\bfseries set\+\_\+erase\+\_\+again\+\_\+num} ()
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_island_acb98955eb9f69a25c7e3af81f4d5cc5c}\label{class_island_acb98955eb9f69a25c7e3af81f4d5cc5c}} 
+const static int32\+\_\+t \mbox{\hyperlink{class_island_acb98955eb9f69a25c7e3af81f4d5cc5c}{I\+N\+I\+T\+I\+A\+L\+I\+Z\+I\+NG}} = 0
+\begin{DoxyCompactList}\small\item\em status flag for if the island is initializing. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_a857212729b8405e77721f499d0b85513}\label{class_island_a857212729b8405e77721f499d0b85513}} 
+const static int32\+\_\+t \mbox{\hyperlink{class_island_a857212729b8405e77721f499d0b85513}{F\+I\+L\+L\+ED}} = 1
+\begin{DoxyCompactList}\small\item\em status flag for if the island is filled. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_a26a2558e99586f017335aa0ef4612758}\label{class_island_a26a2558e99586f017335aa0ef4612758}} 
+const static int32\+\_\+t \mbox{\hyperlink{class_island_a26a2558e99586f017335aa0ef4612758}{R\+E\+P\+O\+P\+U\+L\+A\+T\+I\+NG}} = 2
+\begin{DoxyCompactList}\small\item\em status flag for if the island is repopulating. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_island_a859a134cc183618af109dd69b85f2955}\label{class_island_a859a134cc183618af109dd69b85f2955}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_a859a134cc183618af109dd69b85f2955}{id}}
+\begin{DoxyCompactList}\small\item\em An integer ID for this island. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_a5973473a3aad42bec285f02522cacce8}\label{class_island_a5973473a3aad42bec285f02522cacce8}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_a5973473a3aad42bec285f02522cacce8}{max\+\_\+size}}
+\begin{DoxyCompactList}\small\item\em The maximum number of genomes in the island. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_a054b583b4364d07d8c7819daf9bcdb47}\label{class_island_a054b583b4364d07d8c7819daf9bcdb47}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_a054b583b4364d07d8c7819daf9bcdb47}{erased\+\_\+generation\+\_\+id}} = -\/1
+\begin{DoxyCompactList}\small\item\em The latest generation id of an erased island, erased\+\_\+generation\+\_\+id = largest\+\_\+generation\+\_\+id when this island is erased, to prevent deleted genomes get inserted back. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_a24a6f4f8d54cb448ccd3be82385c2e02}\label{class_island_a24a6f4f8d54cb448ccd3be82385c2e02}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_a24a6f4f8d54cb448ccd3be82385c2e02}{latest\+\_\+generation\+\_\+id}}
+\begin{DoxyCompactList}\small\item\em The latest generation id of genome being generated, including the ones doing backprop by workers. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_a41c1201d69104c49438c97dbc8c93db2}\label{class_island_a41c1201d69104c49438c97dbc8c93db2}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ $>$ \mbox{\hyperlink{class_island_a41c1201d69104c49438c97dbc8c93db2}{genomes}}
+\begin{DoxyCompactList}\small\item\em The genomes on this island, stored in sorted order best (front) to worst (back). \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_acec5d3319641d6b494157fdb737e0622}\label{class_island_acec5d3319641d6b494157fdb737e0622}} 
+\textbf{ unordered\+\_\+map}$<$ \textbf{ string}, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ $>$ $>$ {\bfseries structure\+\_\+map}
+\item 
+\mbox{\Hypertarget{class_island_a6cd2fa92f5e9a23dbabc47f050c1837d}\label{class_island_a6cd2fa92f5e9a23dbabc47f050c1837d}} 
+int32\+\_\+t {\bfseries status}
+\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_ae46bdcec5ad489d18a4bbd9f22d9cabc}{erase\+\_\+again}}
+\begin{DoxyCompactList}\small\item\em \begin{quote}
+The status of this island (either \mbox{\hyperlink{class_island}{Island}}\+:I\+N\+I\+T\+I\+A\+L\+I\+Z\+I\+NG, \mbox{\hyperlink{class_island_a857212729b8405e77721f499d0b85513}{Island\+::\+F\+I\+L\+L\+ED}} or \mbox{\hyperlink{class_island_a26a2558e99586f017335aa0ef4612758}{Island\+::\+R\+E\+P\+O\+P\+U\+L\+A\+T\+I\+NG}} \end{quote}
+\end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_aa676d36c51b69868c42d08fbcf6733c8}\label{class_island_aa676d36c51b69868c42d08fbcf6733c8}} 
+bool \mbox{\hyperlink{class_island_aa676d36c51b69868c42d08fbcf6733c8}{erased}}
+\begin{DoxyCompactList}\small\item\em a flag to track if this islands has been erased \end{DoxyCompactList}\end{DoxyCompactItemize}
+
+
+\doxysubsection{Constructor \& Destructor Documentation}
+\mbox{\Hypertarget{class_island_a32f068675c8a7f999cb18464d00e8119}\label{class_island_a32f068675c8a7f999cb18464d00e8119}} 
+\index{Island@{Island}!Island@{Island}}
+\index{Island@{Island}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{Island()}{Island()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}}
+{\footnotesize\ttfamily Island\+::\+Island (\begin{DoxyParamCaption}\item[{int32\+\_\+t}]{id,  }\item[{int32\+\_\+t}]{max\+\_\+size }\end{DoxyParamCaption})}
+
+
+
+Initializes an island with a given max size. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em max\+\_\+size} & is the maximum number of genomes in the island. \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_island_a02fc26cf7fb95d750c501494b855707d}\label{class_island_a02fc26cf7fb95d750c501494b855707d}} 
+\index{Island@{Island}!Island@{Island}}
+\index{Island@{Island}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{Island()}{Island()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}}
+{\footnotesize\ttfamily Island\+::\+Island (\begin{DoxyParamCaption}\item[{int32\+\_\+t}]{id,  }\item[{\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ $>$}]{genomes }\end{DoxyParamCaption})}
+
+
+
+Initializes an island filled the supplied genomes. 
+
+The size of the island will be the size of the supplied genome vector. The island status is set to filled. 
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_island_a7c3b5331a7ee1dff6206a855e6b5c8b8}\label{class_island_a7c3b5331a7ee1dff6206a855e6b5c8b8}} 
+\index{Island@{Island}!copy\_random\_genome@{copy\_random\_genome}}
+\index{copy\_random\_genome@{copy\_random\_genome}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{copy\_random\_genome()}{copy\_random\_genome()}}
+{\footnotesize\ttfamily void Island\+::copy\+\_\+random\+\_\+genome (\begin{DoxyParamCaption}\item[{\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&}]{rng\+\_\+0\+\_\+1,  }\item[{\textbf{ minstd\+\_\+rand0} \&}]{generator,  }\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$}]{genome }\end{DoxyParamCaption})}
+
+
+
+Selects a genome from the island at random and returns a copy of it. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em rng\+\_\+0\+\_\+1} & is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). \\
+\hline
+{\em generator} & is the random number generator \\
+\hline
+{\em genome} & will be the copied genome, an addresss to a pointer needs to be passed. \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_island_ac49713b90f9110f52c5083540448df8d}\label{class_island_ac49713b90f9110f52c5083540448df8d}} 
+\index{Island@{Island}!copy\_two\_random\_genomes@{copy\_two\_random\_genomes}}
+\index{copy\_two\_random\_genomes@{copy\_two\_random\_genomes}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{copy\_two\_random\_genomes()}{copy\_two\_random\_genomes()}}
+{\footnotesize\ttfamily void Island\+::copy\+\_\+two\+\_\+random\+\_\+genomes (\begin{DoxyParamCaption}\item[{\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&}]{rng\+\_\+0\+\_\+1,  }\item[{\textbf{ minstd\+\_\+rand0} \&}]{generator,  }\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$}]{genome1,  }\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$}]{genome2 }\end{DoxyParamCaption})}
+
+
+
+Selects two different genomes from the island at random and returns copies of them. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em rng\+\_\+0\+\_\+1} & is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). \\
+\hline
+{\em generator} & is the random number generator \\
+\hline
+{\em genome1} & will be the first copied genome, an addresss to a pointer needs to be passed. \\
+\hline
+{\em genome2} & will be the second copied genome, an addresss to a pointer needs to be passed. \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_island_aea94baab5d4faa09454131236baf187c}\label{class_island_aea94baab5d4faa09454131236baf187c}} 
+\index{Island@{Island}!get\_best\_fitness@{get\_best\_fitness}}
+\index{get\_best\_fitness@{get\_best\_fitness}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{get\_best\_fitness()}{get\_best\_fitness()}}
+{\footnotesize\ttfamily double Island\+::get\+\_\+best\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the fitness of the best genome in the island. 
+
+\begin{DoxyReturn}{Returns}
+the best fitness of the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_abf327f29018863338f4eb351c1f4a2c8}\label{class_island_abf327f29018863338f4eb351c1f4a2c8}} 
+\index{Island@{Island}!get\_best\_genome@{get\_best\_genome}}
+\index{get\_best\_genome@{get\_best\_genome}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{get\_best\_genome()}{get\_best\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Island\+::get\+\_\+best\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the best genomme in the island. 
+
+\begin{DoxyReturn}{Returns}
+the best genome in the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_ac5cae801aac1403f3523a7949e415417}\label{class_island_ac5cae801aac1403f3523a7949e415417}} 
+\index{Island@{Island}!get\_max\_size@{get\_max\_size}}
+\index{get\_max\_size@{get\_max\_size}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{get\_max\_size()}{get\_max\_size()}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+::get\+\_\+max\+\_\+size (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the maximum number of genomes the island can hold. 
+
+\begin{DoxyReturn}{Returns}
+the maximum number of genomes this island can have 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_a8c941beca36c75f2c4fc2fd0d2dfc2c5}\label{class_island_a8c941beca36c75f2c4fc2fd0d2dfc2c5}} 
+\index{Island@{Island}!get\_status@{get\_status}}
+\index{get\_status@{get\_status}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{get\_status()}{get\_status()}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+::get\+\_\+status (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+\begin{DoxyReturn}{Returns}
+the status of the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_ac135f9b252512f04afcd7f8c2f3f621f}\label{class_island_ac135f9b252512f04afcd7f8c2f3f621f}} 
+\index{Island@{Island}!get\_worst\_fitness@{get\_worst\_fitness}}
+\index{get\_worst\_fitness@{get\_worst\_fitness}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_fitness()}{get\_worst\_fitness()}}
+{\footnotesize\ttfamily double Island\+::get\+\_\+worst\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the fitness of the worst genome in the island. 
+
+\begin{DoxyReturn}{Returns}
+the worst fitness of the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_a2f5d1d504a6bc11d0d63cf9d4bea5a63}\label{class_island_a2f5d1d504a6bc11d0d63cf9d4bea5a63}} 
+\index{Island@{Island}!get\_worst\_genome@{get\_worst\_genome}}
+\index{get\_worst\_genome@{get\_worst\_genome}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_genome()}{get\_worst\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Island\+::get\+\_\+worst\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the worst genomme in the island. 
+
+\begin{DoxyReturn}{Returns}
+the worst genome in the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_a105174354a7313b3c6520892a3de653e}\label{class_island_a105174354a7313b3c6520892a3de653e}} 
+\index{Island@{Island}!insert\_genome@{insert\_genome}}
+\index{insert\_genome@{insert\_genome}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{insert\_genome()}{insert\_genome()}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+::insert\+\_\+genome (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$}]{genome }\end{DoxyParamCaption})}
+
+
+
+Inserts a genome into the island. 
+
+Genomes are inserted in best to worst order genomes\mbox{[}0\mbox{]} will have the best fitness and genomes\mbox{[}size -\/ 1\mbox{]} will have the worst.
+
+
+\begin{DoxyParams}{Parameters}
+{\em genome} & is the genome to be inserted. \\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+-\/1 if not inserted, otherwise the index it was inserted at 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_a42a519a1626c5db6004173529a5e2627}\label{class_island_a42a519a1626c5db6004173529a5e2627}} 
+\index{Island@{Island}!is\_full@{is\_full}}
+\index{is\_full@{is\_full}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{is\_full()}{is\_full()}}
+{\footnotesize\ttfamily bool Island\+::is\+\_\+full (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns true if the island has \mbox{\hyperlink{class_island_a5973473a3aad42bec285f02522cacce8}{Island\+::max\+\_\+size}} genomes. 
+
+\begin{DoxyReturn}{Returns}
+true if the number of genomes in the island is $>$= size (although it should never be $>$ size). 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_a4d7e730b2c3e9cc53ae3205b1fbe2930}\label{class_island_a4d7e730b2c3e9cc53ae3205b1fbe2930}} 
+\index{Island@{Island}!is\_initializing@{is\_initializing}}
+\index{is\_initializing@{is\_initializing}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{is\_initializing()}{is\_initializing()}}
+{\footnotesize\ttfamily bool Island\+::is\+\_\+initializing (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns true if the island is initializing, i.\+e., it\textquotesingle{}s size is $<$= max\+\_\+size and it hasn\textquotesingle{}t been cleared out for repopulating. 
+
+\begin{DoxyReturn}{Returns}
+true if island is initializing. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_a79525b52b34ef3674b837072b5d34d19}\label{class_island_a79525b52b34ef3674b837072b5d34d19}} 
+\index{Island@{Island}!is\_repopulating@{is\_repopulating}}
+\index{is\_repopulating@{is\_repopulating}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{is\_repopulating()}{is\_repopulating()}}
+{\footnotesize\ttfamily bool Island\+::is\+\_\+repopulating (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns true if the island is repopulating, i.\+e., it\textquotesingle{}s size is $<$= max\+\_\+size and it has been full before but cleared out for repopulation. 
+
+\begin{DoxyReturn}{Returns}
+true if island is repopulating. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_a9d092c81f7d97c72972dfbdf6fb7cb14}\label{class_island_a9d092c81f7d97c72972dfbdf6fb7cb14}} 
+\index{Island@{Island}!print@{print}}
+\index{print@{print}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{print()}{print()}}
+{\footnotesize\ttfamily void Island\+::print (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{indent = {\ttfamily \char`\"{}\char`\"{}} }\end{DoxyParamCaption})}
+
+
+
+Prints out the state of this island. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em indent} & is how much to indent what is printed out \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_island_a41f743dc56fa3c26f1e709222416cadf}\label{class_island_a41f743dc56fa3c26f1e709222416cadf}} 
+\index{Island@{Island}!size@{size}}
+\index{size@{size}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{size()}{size()}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+::size (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the size of the island. 
+
+\begin{DoxyReturn}{Returns}
+the number of genomes in this island. 
+\end{DoxyReturn}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_island_ae46bdcec5ad489d18a4bbd9f22d9cabc}\label{class_island_ae46bdcec5ad489d18a4bbd9f22d9cabc}} 
+\index{Island@{Island}!erase\_again@{erase\_again}}
+\index{erase\_again@{erase\_again}!Island@{Island}}
+\doxysubsubsection{\texorpdfstring{erase\_again}{erase\_again}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+::erase\+\_\+again\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+\begin{quote}
+The status of this island (either \mbox{\hyperlink{class_island}{Island}}\+:I\+N\+I\+T\+I\+A\+L\+I\+Z\+I\+NG, \mbox{\hyperlink{class_island_a857212729b8405e77721f499d0b85513}{Island\+::\+F\+I\+L\+L\+ED}} or \mbox{\hyperlink{class_island_a26a2558e99586f017335aa0ef4612758}{Island\+::\+R\+E\+P\+O\+P\+U\+L\+A\+T\+I\+NG}} \end{quote}
+
+
+a flag to track if this islands has been erased 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/island.\+hxx\item 
+rnn/island.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_island_speciation_strategy.eps b/docs/latex/class_island_speciation_strategy.eps
new file mode 100644
index 00000000..57b7865c
--- /dev/null
+++ b/docs/latex/class_island_speciation_strategy.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
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+  newpath
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+% ----- classes -----
+
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diff --git a/docs/latex/class_island_speciation_strategy.tex b/docs/latex/class_island_speciation_strategy.tex
new file mode 100644
index 00000000..cad293db
--- /dev/null
+++ b/docs/latex/class_island_speciation_strategy.tex
@@ -0,0 +1,419 @@
+\hypertarget{class_island_speciation_strategy}{}\doxysection{Island\+Speciation\+Strategy Class Reference}
+\label{class_island_speciation_strategy}\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+Inheritance diagram for Island\+Speciation\+Strategy\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_island_speciation_strategy}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\hyperlink{class_island_speciation_strategy_a62a9572d5d379edd35bda87dc81b335d}{Island\+Speciation\+Strategy}} (int32\+\_\+t \+\_\+number\+\_\+of\+\_\+islands, int32\+\_\+t \+\_\+max\+\_\+island\+\_\+size, double \+\_\+mutation\+\_\+rate, double \+\_\+intra\+\_\+island\+\_\+crossover\+\_\+rate, double \+\_\+inter\+\_\+island\+\_\+crossover\+\_\+rate, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$\+\_\+seed\+\_\+genome, \textbf{ string} \+\_\+island\+\_\+ranking\+\_\+method, \textbf{ string} \+\_\+repopulation\+\_\+method, int32\+\_\+t \+\_\+extinction\+\_\+event\+\_\+generation\+\_\+number, int32\+\_\+t \+\_\+repopulation\+\_\+mutations, int32\+\_\+t \+\_\+islands\+\_\+to\+\_\+exterminate, int32\+\_\+t \+\_\+max\+\_\+genomes, bool \+\_\+repeat\+\_\+extinction, bool \mbox{\hyperlink{class_island_speciation_strategy_a2001746533019215214d281f5a62fee2}{seed\+\_\+genome\+\_\+was\+\_\+minimal}})
+\begin{DoxyCompactList}\small\item\em Creates a new \mbox{\hyperlink{class_island_speciation_strategy}{Island\+Speciation\+Strategy}}. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_island_speciation_strategy_a3731543755dde917289df1b0630543b7}{Island\+Speciation\+Strategy}} (int32\+\_\+t \+\_\+number\+\_\+of\+\_\+islands, int32\+\_\+t \+\_\+max\+\_\+island\+\_\+size, double \+\_\+mutation\+\_\+rate, double \+\_\+intra\+\_\+island\+\_\+crossover\+\_\+rate, double \+\_\+inter\+\_\+island\+\_\+crossover\+\_\+rate, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$\+\_\+seed\+\_\+genome, \textbf{ string} \+\_\+island\+\_\+ranking\+\_\+method, \textbf{ string} \+\_\+repopulation\+\_\+method, int32\+\_\+t \+\_\+extinction\+\_\+event\+\_\+generation\+\_\+number, int32\+\_\+t \+\_\+repopulation\+\_\+mutations, int32\+\_\+t \+\_\+islands\+\_\+to\+\_\+exterminate, bool \mbox{\hyperlink{class_island_speciation_strategy_a2001746533019215214d281f5a62fee2}{seed\+\_\+genome\+\_\+was\+\_\+minimal}}, \textbf{ function}$<$ void(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&modify)
+\begin{DoxyCompactList}\small\item\em Transfer learning constructor. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_a2b75aca60616268e4a6aee93ee4e5aee}{get\+\_\+generated\+\_\+genomes}} () const
+\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_ab44e2abd372cd97932dd87ed1b9c62c2}{get\+\_\+inserted\+\_\+genomes}} () const
+\item 
+double \mbox{\hyperlink{class_island_speciation_strategy_a4db5c946c86373cf256177b35553b808}{get\+\_\+best\+\_\+fitness}} ()
+\begin{DoxyCompactList}\small\item\em Gets the fitness of the best genome of all the islands. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_island_speciation_strategy_a516627db390391867d6dd02f78e27caf}{get\+\_\+worst\+\_\+fitness}} ()
+\begin{DoxyCompactList}\small\item\em Gets the fitness of the worst genome of all the islands. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_island_speciation_strategy_a1a8a770c165b22a5070e11a3f579375e}{get\+\_\+best\+\_\+genome}} ()
+\begin{DoxyCompactList}\small\item\em Gets the best genome of all the islands. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_island_speciation_strategy_a563860351e5f176d539bc297949d490f}{get\+\_\+worst\+\_\+genome}} ()
+\begin{DoxyCompactList}\small\item\em Gets the the worst genome of all the islands. \end{DoxyCompactList}\item 
+bool \mbox{\hyperlink{class_island_speciation_strategy_a57d264f45976d729bfb0a59129e1fd5a}{islands\+\_\+full}} () const
+\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_a6ae98982d01c68214e4bd703fe18146f}{insert\+\_\+genome}} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$genome)
+\begin{DoxyCompactList}\small\item\em Inserts a {\bfseries{copy}} of the genome into one of the islands handled by this strategy, determined by the R\+N\+N\+\_\+\+Genome\+::get\+\_\+group\+\_\+id() method. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_a4103cc2b64eb18788c8c32118094645a}{get\+\_\+worst\+\_\+island\+\_\+by\+\_\+best\+\_\+genome}} ()
+\begin{DoxyCompactList}\small\item\em find the worst island in the population, the worst island\textquotesingle{}s best genome is the worst among all the islands \end{DoxyCompactList}\item 
+\textbf{ vector}$<$ int32\+\_\+t $>$ \mbox{\hyperlink{class_island_speciation_strategy_a4dc7a8138b13b6ca22acbe9038e90ae4}{rank\+\_\+islands}} ()
+\begin{DoxyCompactList}\small\item\em rank the islands by their best fitness, the fitness of ranked islands are in descending order \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_island_speciation_strategy_a1d209dc38c374ffcb8ac7c34f72b2ce9}{generate\+\_\+genome}} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \textbf{ function}$<$ void(int32\+\_\+t, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&mutate, \textbf{ function}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&crossover)
+\begin{DoxyCompactList}\small\item\em Generates a new genome. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a8763001966861643be095b5c051fa1f9}\label{class_island_speciation_strategy_a8763001966861643be095b5c051fa1f9}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries generate\+\_\+for\+\_\+filled\+\_\+island} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \textbf{ function}$<$ void(int32\+\_\+t, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&mutate, \textbf{ function}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&crossover)
+\item 
+void \mbox{\hyperlink{class_island_speciation_strategy_a4ba6785df117932f3c465cbc31a5ca3f}{print}} (\textbf{ string} indent=\char`\"{}\char`\"{}) const
+\begin{DoxyCompactList}\small\item\em Prints out all the island\textquotesingle{}s populations. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_ae578a7475f4825a7fa7fbf70738070c5}\label{class_island_speciation_strategy_ae578a7475f4825a7fa7fbf70738070c5}} 
+\textbf{ string} \mbox{\hyperlink{class_island_speciation_strategy_ae578a7475f4825a7fa7fbf70738070c5}{get\+\_\+strategy\+\_\+information\+\_\+headers}} () const
+\begin{DoxyCompactList}\small\item\em Gets speciation strategy information headers for logs. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a2b29208908a8a27a5693e27401790a97}\label{class_island_speciation_strategy_a2b29208908a8a27a5693e27401790a97}} 
+\textbf{ string} \mbox{\hyperlink{class_island_speciation_strategy_a2b29208908a8a27a5693e27401790a97}{get\+\_\+strategy\+\_\+information\+\_\+values}} () const
+\begin{DoxyCompactList}\small\item\em Gets speciation strategy information values for logs. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_aa26da7c800d7ab2b1299554a490deb4c}\label{class_island_speciation_strategy_aa26da7c800d7ab2b1299554a490deb4c}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_island_speciation_strategy_aa26da7c800d7ab2b1299554a490deb4c}{parents\+\_\+repopulation}} (\textbf{ string} method, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \textbf{ function}$<$ void(int32\+\_\+t, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&mutate, \textbf{ function}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&crossover)
+\begin{DoxyCompactList}\small\item\em \mbox{\hyperlink{class_island}{Island}} repopulation through two random parents from two seperate islands, parents can be random genomes or best genome from the island. \end{DoxyCompactList}\item 
+void \mbox{\hyperlink{class_island_speciation_strategy_aea495f09600ae8ab003e67957d174814}{fill\+\_\+island}} (int32\+\_\+t best\+\_\+island)
+\begin{DoxyCompactList}\small\item\em fill a island with the best island. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_af104950bd763f5166da9e574ff660be7}\label{class_island_speciation_strategy_af104950bd763f5166da9e574ff660be7}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries get\+\_\+global\+\_\+best\+\_\+genome} ()
+\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a2a467e8e681d28de3c05fe4f357c75ab}\label{class_island_speciation_strategy_a2a467e8e681d28de3c05fe4f357c75ab}} 
+void {\bfseries set\+\_\+erased\+\_\+islands\+\_\+status} ()
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_aab18708f4ad07f725782234e31ee011f}\label{class_island_speciation_strategy_aab18708f4ad07f725782234e31ee011f}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_aab18708f4ad07f725782234e31ee011f}{generation\+\_\+island}}
+\begin{DoxyCompactList}\small\item\em Used to track which island to generate the next genome from. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_adf6fad09de8e0b8ccc927580e4bd68f4}\label{class_island_speciation_strategy_adf6fad09de8e0b8ccc927580e4bd68f4}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_adf6fad09de8e0b8ccc927580e4bd68f4}{number\+\_\+of\+\_\+islands}}
+\begin{DoxyCompactList}\small\item\em the number of islands to have. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_ac78b4a8411e69dfea9b0a7b5aa3e3d99}\label{class_island_speciation_strategy_ac78b4a8411e69dfea9b0a7b5aa3e3d99}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_ac78b4a8411e69dfea9b0a7b5aa3e3d99}{max\+\_\+island\+\_\+size}}
+\begin{DoxyCompactList}\small\item\em the maximum number of genomes in an island. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_island_speciation_strategy_aa5969191a3d5f23deea86d85c88292f0}{mutation\+\_\+rate}}
+\begin{DoxyCompactList}\small\item\em How frequently to do mutations. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_island_speciation_strategy_a60bc752d6262d42b1dd294d8c4da563d}{intra\+\_\+island\+\_\+crossover\+\_\+rate}}
+\begin{DoxyCompactList}\small\item\em How frequently to do intra-\/island crossovers. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_island_speciation_strategy_af4c685f5be866da1bb4395506aec112e}{inter\+\_\+island\+\_\+crossover\+\_\+rate}}
+\begin{DoxyCompactList}\small\item\em How frequently to do inter-\/island crossovers. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a0878978f59055a4a5a7aa54dc4b905a3}\label{class_island_speciation_strategy_a0878978f59055a4a5a7aa54dc4b905a3}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_a0878978f59055a4a5a7aa54dc4b905a3}{generated\+\_\+genomes}}
+\begin{DoxyCompactList}\small\item\em How many genomes have been generated by this speciation strategy. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_af5d118e77d6c24c328f8d477f776f15e}\label{class_island_speciation_strategy_af5d118e77d6c24c328f8d477f776f15e}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_af5d118e77d6c24c328f8d477f776f15e}{inserted\+\_\+genomes}}
+\begin{DoxyCompactList}\small\item\em How many genomes have been inserted into this speciatoin strategy. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a7b3dd21a20e4a14aa2a0657c73c3d608}\label{class_island_speciation_strategy_a7b3dd21a20e4a14aa2a0657c73c3d608}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_island_speciation_strategy_a7b3dd21a20e4a14aa2a0657c73c3d608}{seed\+\_\+genome}}
+\begin{DoxyCompactList}\small\item\em keep a reference to the seed genome so we can re-\/use it across islands and not duplicate innovation numbers. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a2e62f197c3bcc0d40369ac7a7ea9ed31}\label{class_island_speciation_strategy_a2e62f197c3bcc0d40369ac7a7ea9ed31}} 
+\textbf{ string} \mbox{\hyperlink{class_island_speciation_strategy_a2e62f197c3bcc0d40369ac7a7ea9ed31}{island\+\_\+ranking\+\_\+method}}
+\begin{DoxyCompactList}\small\item\em The method used to find the worst island in population. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_adcdbda3a002564d49f286fb2699f37f5}\label{class_island_speciation_strategy_adcdbda3a002564d49f286fb2699f37f5}} 
+\textbf{ string} \mbox{\hyperlink{class_island_speciation_strategy_adcdbda3a002564d49f286fb2699f37f5}{repopulation\+\_\+method}}
+\begin{DoxyCompactList}\small\item\em The method used to repopulate the island after being erased. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_acf9f4b165c831eada8b46224eab05443}{extinction\+\_\+event\+\_\+generation\+\_\+number}}
+\begin{DoxyCompactList}\small\item\em When \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} reaches this generation id, an extinction event will be triggered (i.\+e. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_af8729a80fa4e31059e5ae020476e5cd3}\label{class_island_speciation_strategy_af8729a80fa4e31059e5ae020476e5cd3}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_af8729a80fa4e31059e5ae020476e5cd3}{repopulation\+\_\+mutations}}
+\begin{DoxyCompactList}\small\item\em When an island is erradicated, it is repopulated with copies of the best genome that have this number of mutations applied to them. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a51a285855bc78f42965b8d68a6e36257}\label{class_island_speciation_strategy_a51a285855bc78f42965b8d68a6e36257}} 
+int32\+\_\+t \mbox{\hyperlink{class_island_speciation_strategy_a51a285855bc78f42965b8d68a6e36257}{islands\+\_\+to\+\_\+exterminate}}
+\begin{DoxyCompactList}\small\item\em When an extinction event is triggered, this is the number of islands that will be exterminated. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_af762308abf1f29ef20450b6d953a485f}\label{class_island_speciation_strategy_af762308abf1f29ef20450b6d953a485f}} 
+int32\+\_\+t {\bfseries max\+\_\+genomes}
+\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a2001746533019215214d281f5a62fee2}\label{class_island_speciation_strategy_a2001746533019215214d281f5a62fee2}} 
+bool \mbox{\hyperlink{class_island_speciation_strategy_a2001746533019215214d281f5a62fee2}{seed\+\_\+genome\+\_\+was\+\_\+minimal}}
+\begin{DoxyCompactList}\small\item\em is true if we passed in a minimal genome (i.\+e., are not using transfer learning) \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a225690c3cb06534ac83236ede2abab5d}\label{class_island_speciation_strategy_a225690c3cb06534ac83236ede2abab5d}} 
+bool {\bfseries repeat\+\_\+extinction}
+\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_a51947f81a70302a029b332b6d097beda}\label{class_island_speciation_strategy_a51947f81a70302a029b332b6d097beda}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_island}{Island}} $\ast$ $>$ \mbox{\hyperlink{class_island_speciation_strategy_a51947f81a70302a029b332b6d097beda}{islands}}
+\begin{DoxyCompactList}\small\item\em All the islands which contain the genomes for this speciation strategy. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_island_speciation_strategy_ac5e0e57d0758c12a13f4c867cf1d9e7a}\label{class_island_speciation_strategy_ac5e0e57d0758c12a13f4c867cf1d9e7a}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries global\+\_\+best\+\_\+genome}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Constructor \& Destructor Documentation}
+\mbox{\Hypertarget{class_island_speciation_strategy_a62a9572d5d379edd35bda87dc81b335d}\label{class_island_speciation_strategy_a62a9572d5d379edd35bda87dc81b335d}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{IslandSpeciationStrategy()}{IslandSpeciationStrategy()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}}
+{\footnotesize\ttfamily Island\+Speciation\+Strategy\+::\+Island\+Speciation\+Strategy (\begin{DoxyParamCaption}\item[{int32\+\_\+t}]{\+\_\+number\+\_\+of\+\_\+islands,  }\item[{int32\+\_\+t}]{\+\_\+max\+\_\+island\+\_\+size,  }\item[{double}]{\+\_\+mutation\+\_\+rate,  }\item[{double}]{\+\_\+intra\+\_\+island\+\_\+crossover\+\_\+rate,  }\item[{double}]{\+\_\+inter\+\_\+island\+\_\+crossover\+\_\+rate,  }\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$}]{\+\_\+seed\+\_\+genome,  }\item[{\textbf{ string}}]{\+\_\+island\+\_\+ranking\+\_\+method,  }\item[{\textbf{ string}}]{\+\_\+repopulation\+\_\+method,  }\item[{int32\+\_\+t}]{\+\_\+extinction\+\_\+event\+\_\+generation\+\_\+number,  }\item[{int32\+\_\+t}]{\+\_\+repopulation\+\_\+mutations,  }\item[{int32\+\_\+t}]{\+\_\+islands\+\_\+to\+\_\+exterminate,  }\item[{int32\+\_\+t}]{\+\_\+max\+\_\+genomes,  }\item[{bool}]{\+\_\+repeat\+\_\+extinction,  }\item[{bool}]{seed\+\_\+genome\+\_\+was\+\_\+minimal }\end{DoxyParamCaption})}
+
+
+
+Creates a new \mbox{\hyperlink{class_island_speciation_strategy}{Island\+Speciation\+Strategy}}. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em number\+\_\+of\+\_\+islands} & specifies how many islands it will us e \\
+\hline
+{\em max\+\_\+island\+\_\+size} & specifies the maximum number of gneomes in an island \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_island_speciation_strategy_a3731543755dde917289df1b0630543b7}\label{class_island_speciation_strategy_a3731543755dde917289df1b0630543b7}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{IslandSpeciationStrategy()}{IslandSpeciationStrategy()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}}
+{\footnotesize\ttfamily Island\+Speciation\+Strategy\+::\+Island\+Speciation\+Strategy (\begin{DoxyParamCaption}\item[{int32\+\_\+t}]{\+\_\+number\+\_\+of\+\_\+islands,  }\item[{int32\+\_\+t}]{\+\_\+max\+\_\+island\+\_\+size,  }\item[{double}]{\+\_\+mutation\+\_\+rate,  }\item[{double}]{\+\_\+intra\+\_\+island\+\_\+crossover\+\_\+rate,  }\item[{double}]{\+\_\+inter\+\_\+island\+\_\+crossover\+\_\+rate,  }\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$}]{\+\_\+seed\+\_\+genome,  }\item[{\textbf{ string}}]{\+\_\+island\+\_\+ranking\+\_\+method,  }\item[{\textbf{ string}}]{\+\_\+repopulation\+\_\+method,  }\item[{int32\+\_\+t}]{\+\_\+extinction\+\_\+event\+\_\+generation\+\_\+number,  }\item[{int32\+\_\+t}]{\+\_\+repopulation\+\_\+mutations,  }\item[{int32\+\_\+t}]{\+\_\+islands\+\_\+to\+\_\+exterminate,  }\item[{bool}]{seed\+\_\+genome\+\_\+was\+\_\+minimal,  }\item[{\textbf{ function}$<$ void(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&}]{modify }\end{DoxyParamCaption})}
+
+
+
+Transfer learning constructor. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em Modification} & function to be applied to every copy of the seed\+\_\+genome \\
+\hline
+\end{DoxyParams}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_island_speciation_strategy_aea495f09600ae8ab003e67957d174814}\label{class_island_speciation_strategy_aea495f09600ae8ab003e67957d174814}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!fill\_island@{fill\_island}}
+\index{fill\_island@{fill\_island}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{fill\_island()}{fill\_island()}}
+{\footnotesize\ttfamily void Island\+Speciation\+Strategy\+::fill\+\_\+island (\begin{DoxyParamCaption}\item[{int32\+\_\+t}]{best\+\_\+island }\end{DoxyParamCaption})}
+
+
+
+fill a island with the best island. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em best\+\_\+island} & is the island id of the best island \\
+\hline
+{\em fill\+\_\+island} & is the island is of the island to be filled \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_island_speciation_strategy_a1d209dc38c374ffcb8ac7c34f72b2ce9}\label{class_island_speciation_strategy_a1d209dc38c374ffcb8ac7c34f72b2ce9}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!generate\_genome@{generate\_genome}}
+\index{generate\_genome@{generate\_genome}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{generate\_genome()}{generate\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Island\+Speciation\+Strategy\+::generate\+\_\+genome (\begin{DoxyParamCaption}\item[{\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&}]{rng\+\_\+0\+\_\+1,  }\item[{\textbf{ minstd\+\_\+rand0} \&}]{generator,  }\item[{\textbf{ function}$<$ void(int32\+\_\+t, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&}]{mutate,  }\item[{\textbf{ function}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&}]{crossover }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Generates a new genome. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em rng\+\_\+0\+\_\+1} & is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). \\
+\hline
+{\em generator} & is the random number generator \\
+\hline
+{\em mutate} & is the a function which performs a mutation on a genome \\
+\hline
+{\em crossover} & is the function which performs crossover between two genomes\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+the newly generated genome. 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a76f36f0dd7c47727aef912d48f0fa26b}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_island_speciation_strategy_a4db5c946c86373cf256177b35553b808}\label{class_island_speciation_strategy_a4db5c946c86373cf256177b35553b808}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!get\_best\_fitness@{get\_best\_fitness}}
+\index{get\_best\_fitness@{get\_best\_fitness}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_best\_fitness()}{get\_best\_fitness()}}
+{\footnotesize\ttfamily double Island\+Speciation\+Strategy\+::get\+\_\+best\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Gets the fitness of the best genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the best fitness over all islands 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_afa3f2d35da2172a32ed06588ef09d4d0}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_island_speciation_strategy_a1a8a770c165b22a5070e11a3f579375e}\label{class_island_speciation_strategy_a1a8a770c165b22a5070e11a3f579375e}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!get\_best\_genome@{get\_best\_genome}}
+\index{get\_best\_genome@{get\_best\_genome}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_best\_genome()}{get\_best\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Island\+Speciation\+Strategy\+::get\+\_\+best\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Gets the best genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the best genome of all islands or N\+U\+LL if no genomes have yet been inserted 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_ad0796098d09c25bfee14d9f264bcba2d}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_island_speciation_strategy_a2b75aca60616268e4a6aee93ee4e5aee}\label{class_island_speciation_strategy_a2b75aca60616268e4a6aee93ee4e5aee}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!get\_generated\_genomes@{get\_generated\_genomes}}
+\index{get\_generated\_genomes@{get\_generated\_genomes}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_generated\_genomes()}{get\_generated\_genomes()}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+Speciation\+Strategy\+::get\+\_\+generated\+\_\+genomes (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [virtual]}}
+
+\begin{DoxyReturn}{Returns}
+the number of generated genomes. 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a7699a7050ed5a66693f19e834e9ba082}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_island_speciation_strategy_ab44e2abd372cd97932dd87ed1b9c62c2}\label{class_island_speciation_strategy_ab44e2abd372cd97932dd87ed1b9c62c2}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!get\_inserted\_genomes@{get\_inserted\_genomes}}
+\index{get\_inserted\_genomes@{get\_inserted\_genomes}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_inserted\_genomes()}{get\_inserted\_genomes()}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+Speciation\+Strategy\+::get\+\_\+inserted\+\_\+genomes (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [virtual]}}
+
+\begin{DoxyReturn}{Returns}
+the number of inserted genomes. 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a1f07309130568d8cc79da44c8da6ca69}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_island_speciation_strategy_a516627db390391867d6dd02f78e27caf}\label{class_island_speciation_strategy_a516627db390391867d6dd02f78e27caf}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!get\_worst\_fitness@{get\_worst\_fitness}}
+\index{get\_worst\_fitness@{get\_worst\_fitness}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_fitness()}{get\_worst\_fitness()}}
+{\footnotesize\ttfamily double Island\+Speciation\+Strategy\+::get\+\_\+worst\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Gets the fitness of the worst genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the worst fitness over all islands 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a6bdef578fe33c628a81db35d75eaa473}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_island_speciation_strategy_a563860351e5f176d539bc297949d490f}\label{class_island_speciation_strategy_a563860351e5f176d539bc297949d490f}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!get\_worst\_genome@{get\_worst\_genome}}
+\index{get\_worst\_genome@{get\_worst\_genome}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_genome()}{get\_worst\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Island\+Speciation\+Strategy\+::get\+\_\+worst\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Gets the the worst genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the worst genome of all islands or N\+U\+LL if no genomes have yet been inserted 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_ae84e9c1e0eaf02886b41b1d9adf488f4}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_island_speciation_strategy_a4103cc2b64eb18788c8c32118094645a}\label{class_island_speciation_strategy_a4103cc2b64eb18788c8c32118094645a}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!get\_worst\_island\_by\_best\_genome@{get\_worst\_island\_by\_best\_genome}}
+\index{get\_worst\_island\_by\_best\_genome@{get\_worst\_island\_by\_best\_genome}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_island\_by\_best\_genome()}{get\_worst\_island\_by\_best\_genome()}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+Speciation\+Strategy\+::get\+\_\+worst\+\_\+island\+\_\+by\+\_\+best\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+find the worst island in the population, the worst island\textquotesingle{}s best genome is the worst among all the islands 
+
+\begin{DoxyReturn}{Returns}
+the worst island id 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_speciation_strategy_a6ae98982d01c68214e4bd703fe18146f}\label{class_island_speciation_strategy_a6ae98982d01c68214e4bd703fe18146f}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!insert\_genome@{insert\_genome}}
+\index{insert\_genome@{insert\_genome}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{insert\_genome()}{insert\_genome()}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+Speciation\+Strategy\+::insert\+\_\+genome (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$}]{genome }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Inserts a {\bfseries{copy}} of the genome into one of the islands handled by this strategy, determined by the R\+N\+N\+\_\+\+Genome\+::get\+\_\+group\+\_\+id() method. 
+
+The caller of this method will need to free the memory of the genome passed into this method.
+
+
+\begin{DoxyParams}{Parameters}
+{\em genome} & is the genome to insert. \\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+a value $<$ 0 if the genome was not inserted, 0 if it was a new best genome for all the islands, or $>$ 0 otherwise. 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a1fd87178f38052aa934312e49819e509}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_island_speciation_strategy_a57d264f45976d729bfb0a59129e1fd5a}\label{class_island_speciation_strategy_a57d264f45976d729bfb0a59129e1fd5a}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!islands\_full@{islands\_full}}
+\index{islands\_full@{islands\_full}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{islands\_full()}{islands\_full()}}
+{\footnotesize\ttfamily bool Island\+Speciation\+Strategy\+::islands\+\_\+full (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const}
+
+\begin{DoxyReturn}{Returns}
+true if all the islands are full 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_island_speciation_strategy_a4ba6785df117932f3c465cbc31a5ca3f}\label{class_island_speciation_strategy_a4ba6785df117932f3c465cbc31a5ca3f}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!print@{print}}
+\index{print@{print}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{print()}{print()}}
+{\footnotesize\ttfamily void Island\+Speciation\+Strategy\+::print (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{indent = {\ttfamily \char`\"{}\char`\"{}} }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Prints out all the island\textquotesingle{}s populations. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em indent} & is how much to indent what is printed out \\
+\hline
+\end{DoxyParams}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a1d44f4c87ab00182e61f0fb364f274a9}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_island_speciation_strategy_a4dc7a8138b13b6ca22acbe9038e90ae4}\label{class_island_speciation_strategy_a4dc7a8138b13b6ca22acbe9038e90ae4}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!rank\_islands@{rank\_islands}}
+\index{rank\_islands@{rank\_islands}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{rank\_islands()}{rank\_islands()}}
+{\footnotesize\ttfamily \textbf{ vector}$<$ int32\+\_\+t $>$ Island\+Speciation\+Strategy\+::rank\+\_\+islands (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+rank the islands by their best fitness, the fitness of ranked islands are in descending order 
+
+\begin{DoxyReturn}{Returns}
+island rank from worst to the best 
+\end{DoxyReturn}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_island_speciation_strategy_acf9f4b165c831eada8b46224eab05443}\label{class_island_speciation_strategy_acf9f4b165c831eada8b46224eab05443}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!extinction\_event\_generation\_number@{extinction\_event\_generation\_number}}
+\index{extinction\_event\_generation\_number@{extinction\_event\_generation\_number}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{extinction\_event\_generation\_number}{extinction\_event\_generation\_number}}
+{\footnotesize\ttfamily int32\+\_\+t Island\+Speciation\+Strategy\+::extinction\+\_\+event\+\_\+generation\+\_\+number\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+When \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} reaches this generation id, an extinction event will be triggered (i.\+e. 
+
+islands will be killed and repopulated). \mbox{\Hypertarget{class_island_speciation_strategy_af4c685f5be866da1bb4395506aec112e}\label{class_island_speciation_strategy_af4c685f5be866da1bb4395506aec112e}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!inter\_island\_crossover\_rate@{inter\_island\_crossover\_rate}}
+\index{inter\_island\_crossover\_rate@{inter\_island\_crossover\_rate}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{inter\_island\_crossover\_rate}{inter\_island\_crossover\_rate}}
+{\footnotesize\ttfamily double Island\+Speciation\+Strategy\+::inter\+\_\+island\+\_\+crossover\+\_\+rate\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+How frequently to do inter-\/island crossovers. 
+
+Note that mutation\+\_\+rate + intra\+\_\+island\+\_\+crossover\+\_\+rate + inter\+\_\+island\+\_\+crossover\+\_\+rate should equal 1, if not they will be scaled down such that they do. \mbox{\Hypertarget{class_island_speciation_strategy_a60bc752d6262d42b1dd294d8c4da563d}\label{class_island_speciation_strategy_a60bc752d6262d42b1dd294d8c4da563d}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!intra\_island\_crossover\_rate@{intra\_island\_crossover\_rate}}
+\index{intra\_island\_crossover\_rate@{intra\_island\_crossover\_rate}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{intra\_island\_crossover\_rate}{intra\_island\_crossover\_rate}}
+{\footnotesize\ttfamily double Island\+Speciation\+Strategy\+::intra\+\_\+island\+\_\+crossover\+\_\+rate\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+How frequently to do intra-\/island crossovers. 
+
+Note that mutation\+\_\+rate + intra\+\_\+island\+\_\+crossover\+\_\+rate + inter\+\_\+island\+\_\+crossover\+\_\+rate should equal 1, if not they will be scaled down such that they do. \mbox{\Hypertarget{class_island_speciation_strategy_aa5969191a3d5f23deea86d85c88292f0}\label{class_island_speciation_strategy_aa5969191a3d5f23deea86d85c88292f0}} 
+\index{IslandSpeciationStrategy@{IslandSpeciationStrategy}!mutation\_rate@{mutation\_rate}}
+\index{mutation\_rate@{mutation\_rate}!IslandSpeciationStrategy@{IslandSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{mutation\_rate}{mutation\_rate}}
+{\footnotesize\ttfamily double Island\+Speciation\+Strategy\+::mutation\+\_\+rate\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+How frequently to do mutations. 
+
+Note that mutation\+\_\+rate + intra\+\_\+island\+\_\+crossover\+\_\+rate + inter\+\_\+island\+\_\+crossover\+\_\+rate should equal 1, if not they will be scaled down such that they do. 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/island\+\_\+speciation\+\_\+strategy.\+hxx\item 
+rnn/island\+\_\+speciation\+\_\+strategy.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_l_s_t_m___node.eps b/docs/latex/class_l_s_t_m___node.eps
new file mode 100644
index 00000000..bfb6364e
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+++ b/docs/latex/class_l_s_t_m___node.eps
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diff --git a/docs/latex/class_l_s_t_m___node.tex b/docs/latex/class_l_s_t_m___node.tex
new file mode 100644
index 00000000..76e24c38
--- /dev/null
+++ b/docs/latex/class_l_s_t_m___node.tex
@@ -0,0 +1,189 @@
+\hypertarget{class_l_s_t_m___node}{}\doxysection{L\+S\+T\+M\+\_\+\+Node Class Reference}
+\label{class_l_s_t_m___node}\index{LSTM\_Node@{LSTM\_Node}}
+Inheritance diagram for L\+S\+T\+M\+\_\+\+Node\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_l_s_t_m___node}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_aede0ded08385b7de9cd3f7be255c62c6}\label{class_l_s_t_m___node_aede0ded08385b7de9cd3f7be255c62c6}} 
+{\bfseries L\+S\+T\+M\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+type, double \+\_\+depth)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a32cc552ae0bbdc9363b5a02266eb6094}\label{class_l_s_t_m___node_a32cc552ae0bbdc9363b5a02266eb6094}} 
+void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_af334b263e401ddcf653439a4ca930f40}\label{class_l_s_t_m___node_af334b263e401ddcf653439a4ca930f40}} 
+void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng1\+\_\+1, double range)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a5509f1d068fd6c70c84425d782a2416a}\label{class_l_s_t_m___node_a5509f1d068fd6c70c84425d782a2416a}} 
+void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a41c8c24423dee73f7b54fb2bd545c44b}\label{class_l_s_t_m___node_a41c8c24423dee73f7b54fb2bd545c44b}} 
+void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ae57827aeae92a3dd7f9b483d9007194d}\label{class_l_s_t_m___node_ae57827aeae92a3dd7f9b483d9007194d}} 
+double {\bfseries get\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a66fd6d160869bb0b61019375a74ff950}\label{class_l_s_t_m___node_a66fd6d160869bb0b61019375a74ff950}} 
+void {\bfseries print\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a74414bdd00d5a21f85d1eab3c24f5f5b}\label{class_l_s_t_m___node_a74414bdd00d5a21f85d1eab3c24f5f5b}} 
+void {\bfseries input\+\_\+fired} (int time, double incoming\+\_\+output)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ab92c179e7b6cb7f6e300e7220b0a5252}\label{class_l_s_t_m___node_ab92c179e7b6cb7f6e300e7220b0a5252}} 
+void {\bfseries try\+\_\+update\+\_\+deltas} (int time)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a808eec94e42e90324bf6cba6252aa7b5}\label{class_l_s_t_m___node_a808eec94e42e90324bf6cba6252aa7b5}} 
+void {\bfseries error\+\_\+fired} (int time, double error)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_aa49da071b12d581368555ef6e3eb835c}\label{class_l_s_t_m___node_aa49da071b12d581368555ef6e3eb835c}} 
+void {\bfseries output\+\_\+fired} (int time, double delta)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_afcfe9e362541835c8aff72a0d476792f}\label{class_l_s_t_m___node_afcfe9e362541835c8aff72a0d476792f}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_aca551a5602ae11f34ea0cfa6eb09691a}\label{class_l_s_t_m___node_aca551a5602ae11f34ea0cfa6eb09691a}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a8cdeac6ef873c5a2309e72130747cd5f}\label{class_l_s_t_m___node_a8cdeac6ef873c5a2309e72130747cd5f}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_abd1e2bc87e77ce1267d88acb9828f2be}\label{class_l_s_t_m___node_abd1e2bc87e77ce1267d88acb9828f2be}} 
+void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ac3ded3843152582159a225424b4c50f9}\label{class_l_s_t_m___node_ac3ded3843152582159a225424b4c50f9}} 
+void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_af0e1d6c248dafce960d35f592d4b7bdc}\label{class_l_s_t_m___node_af0e1d6c248dafce960d35f592d4b7bdc}} 
+void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ae4bb4af65e14318814141a4665de48fa}\label{class_l_s_t_m___node_ae4bb4af65e14318814141a4665de48fa}} 
+void {\bfseries reset} (int \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a3d9171e8745d4ab00becd86753f11911}\label{class_l_s_t_m___node_a3d9171e8745d4ab00becd86753f11911}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ac2db752af703b1a3a184499bf6fa8fc8}\label{class_l_s_t_m___node_ac2db752af703b1a3a184499bf6fa8fc8}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a0ee8e33b0259807850d054abb243e7be}\label{class_l_s_t_m___node_a0ee8e33b0259807850d054abb243e7be}} 
+double {\bfseries output\+\_\+gate\+\_\+update\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_aa533f17d8ec43d66c6c88d92aa084769}\label{class_l_s_t_m___node_aa533f17d8ec43d66c6c88d92aa084769}} 
+double {\bfseries output\+\_\+gate\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a05f10b65b2219956ee48a6fc8e874d36}\label{class_l_s_t_m___node_a05f10b65b2219956ee48a6fc8e874d36}} 
+double {\bfseries output\+\_\+gate\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a8f88d74ac21b891f39a6cc65f0d6a81b}\label{class_l_s_t_m___node_a8f88d74ac21b891f39a6cc65f0d6a81b}} 
+double {\bfseries input\+\_\+gate\+\_\+update\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_aef26f0572b7a7d44d8af55ffa133319b}\label{class_l_s_t_m___node_aef26f0572b7a7d44d8af55ffa133319b}} 
+double {\bfseries input\+\_\+gate\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ae5753340e5e520cd1971c3bbddc4cbe3}\label{class_l_s_t_m___node_ae5753340e5e520cd1971c3bbddc4cbe3}} 
+double {\bfseries input\+\_\+gate\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a307883e974538d4d052657cd14a0bdb3}\label{class_l_s_t_m___node_a307883e974538d4d052657cd14a0bdb3}} 
+double {\bfseries forget\+\_\+gate\+\_\+update\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a10353c2533f369c5dcaee1424ab50c04}\label{class_l_s_t_m___node_a10353c2533f369c5dcaee1424ab50c04}} 
+double {\bfseries forget\+\_\+gate\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a087f9f583012fecda4b6f76944dae8bf}\label{class_l_s_t_m___node_a087f9f583012fecda4b6f76944dae8bf}} 
+double {\bfseries forget\+\_\+gate\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a2c59e3299528daf0183436dd3d9a6e96}\label{class_l_s_t_m___node_a2c59e3299528daf0183436dd3d9a6e96}} 
+double {\bfseries cell\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a575b460baecb27f1767af35501432df9}\label{class_l_s_t_m___node_a575b460baecb27f1767af35501432df9}} 
+double {\bfseries cell\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_af02f45197f76e91e54c3fd994e4ed543}\label{class_l_s_t_m___node_af02f45197f76e91e54c3fd994e4ed543}} 
+\textbf{ vector}$<$ double $>$ {\bfseries output\+\_\+gate\+\_\+values}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ae1f98fdddfa0603a4a16f671f3787ee3}\label{class_l_s_t_m___node_ae1f98fdddfa0603a4a16f671f3787ee3}} 
+\textbf{ vector}$<$ double $>$ {\bfseries input\+\_\+gate\+\_\+values}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ae2ec5871a40cb5c1b6d175058e92b6e9}\label{class_l_s_t_m___node_ae2ec5871a40cb5c1b6d175058e92b6e9}} 
+\textbf{ vector}$<$ double $>$ {\bfseries forget\+\_\+gate\+\_\+values}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a2eb15e5c51ecb1a34d7a516aca40e8b4}\label{class_l_s_t_m___node_a2eb15e5c51ecb1a34d7a516aca40e8b4}} 
+\textbf{ vector}$<$ double $>$ {\bfseries cell\+\_\+values}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a37ac337386988e8e8d7b02a3b35a295b}\label{class_l_s_t_m___node_a37ac337386988e8e8d7b02a3b35a295b}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+output\+\_\+gate}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a62deef47dedd6e588abca9f3ca1a872e}\label{class_l_s_t_m___node_a62deef47dedd6e588abca9f3ca1a872e}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+input\+\_\+gate}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a64907518e1f7ef82c378c414eef3d781}\label{class_l_s_t_m___node_a64907518e1f7ef82c378c414eef3d781}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+forget\+\_\+gate}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a04b0c5d9ca313d9ed9c2a20186764e4c}\label{class_l_s_t_m___node_a04b0c5d9ca313d9ed9c2a20186764e4c}} 
+\textbf{ vector}$<$ double $>$ {\bfseries cell\+\_\+in\+\_\+tanh}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ae077cebf907c23dc9c1ae367307cc016}\label{class_l_s_t_m___node_ae077cebf907c23dc9c1ae367307cc016}} 
+\textbf{ vector}$<$ double $>$ {\bfseries cell\+\_\+out\+\_\+tanh}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_af940e2f222935ea7c8558e45c58078ed}\label{class_l_s_t_m___node_af940e2f222935ea7c8558e45c58078ed}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+cell\+\_\+in}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ae6bebf6c0d8927d824584b26b47e7edd}\label{class_l_s_t_m___node_ae6bebf6c0d8927d824584b26b47e7edd}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+cell\+\_\+out}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a68956f741805cac46a7f9e87589a7aa9}\label{class_l_s_t_m___node_a68956f741805cac46a7f9e87589a7aa9}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+prev\+\_\+cell}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a0c8a1839e23d87173fae7c7b91750cd8}\label{class_l_s_t_m___node_a0c8a1839e23d87173fae7c7b91750cd8}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+output\+\_\+gate\+\_\+update\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_accba317d9c292c7f1c872387de3473b1}\label{class_l_s_t_m___node_accba317d9c292c7f1c872387de3473b1}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+output\+\_\+gate\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a1c669909ae6998acf1cc23b211208e6c}\label{class_l_s_t_m___node_a1c669909ae6998acf1cc23b211208e6c}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+output\+\_\+gate\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a45ab782fe8f43b2a87a3a7ed09dc32c8}\label{class_l_s_t_m___node_a45ab782fe8f43b2a87a3a7ed09dc32c8}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+input\+\_\+gate\+\_\+update\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a3177d6ec68b192e8f6ddeafefbf4a241}\label{class_l_s_t_m___node_a3177d6ec68b192e8f6ddeafefbf4a241}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+input\+\_\+gate\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a4e73a481f84892fa0635b8aa82a480df}\label{class_l_s_t_m___node_a4e73a481f84892fa0635b8aa82a480df}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+input\+\_\+gate\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a9b8655deb08ca139ecb2fb367bf87bf8}\label{class_l_s_t_m___node_a9b8655deb08ca139ecb2fb367bf87bf8}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+forget\+\_\+gate\+\_\+update\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a7c0cdb3462828384fb13d3814f4fe08d}\label{class_l_s_t_m___node_a7c0cdb3462828384fb13d3814f4fe08d}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+forget\+\_\+gate\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_ad99e90d6fb339a17fbe437cf8723c40e}\label{class_l_s_t_m___node_ad99e90d6fb339a17fbe437cf8723c40e}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+forget\+\_\+gate\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a44a1d1fb77379e1e13c6a79bce066e9c}\label{class_l_s_t_m___node_a44a1d1fb77379e1e13c6a79bce066e9c}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+cell\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_aef7404e8bf566f1b453da5b144c8198d}\label{class_l_s_t_m___node_aef7404e8bf566f1b453da5b144c8198d}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+cell\+\_\+bias}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_l_s_t_m___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_l_s_t_m___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\end{DoxyCompactItemize}
+\doxysubsection*{Additional Inherited Members}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/lstm\+\_\+node.\+hxx\item 
+rnn/lstm\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_large_image.eps b/docs/latex/class_large_image.eps
new file mode 100644
index 00000000..3d0ce173
--- /dev/null
+++ b/docs/latex/class_large_image.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
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+
+/max % result = MAX(arg1,arg2)
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+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
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+{ gsave
+  2 setlinewidth
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+  exch xspacing mul xoffset add
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+{
+  newpath
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+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
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+/in % draws an input connector for the block at (arg1,arg2)
+{
+  newpath
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+
+% ----- main ------
+
+boxfont setfont
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+(LargeImage) cw
+(ImageInterface) cw
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+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (LargeImage) 0.000000 0.000000 box
+ (ImageInterface) 0.000000 1.000000 box
+
+% ----- relations -----
+
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diff --git a/docs/latex/class_large_image.tex b/docs/latex/class_large_image.tex
new file mode 100644
index 00000000..83d8cb36
--- /dev/null
+++ b/docs/latex/class_large_image.tex
@@ -0,0 +1,122 @@
+\hypertarget{class_large_image}{}\doxysection{Large\+Image Class Reference}
+\label{class_large_image}\index{LargeImage@{LargeImage}}
+Inheritance diagram for Large\+Image\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_large_image}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_large_image_a8678301873cbe109b20376af2f8072e2}\label{class_large_image_a8678301873cbe109b20376af2f8072e2}} 
+{\bfseries Large\+Image} (\textbf{ ifstream} \&infile, int \+\_\+number\+\_\+subimages, int \+\_\+channels, int \+\_\+width, int \+\_\+height, int \+\_\+padding, int \+\_\+classification, const \mbox{\hyperlink{class_large_images}{Large\+Images}} $\ast$\+\_\+images)
+\item 
+\mbox{\Hypertarget{class_large_image_acf887fb82a57366d4d868881198bfc3a}\label{class_large_image_acf887fb82a57366d4d868881198bfc3a}} 
+{\bfseries Large\+Image} (int \+\_\+number\+\_\+subimages, int \+\_\+channels, int \+\_\+width, int \+\_\+height, int \+\_\+padding, int \+\_\+classification, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ uint8\+\_\+t $>$ $>$ $>$ \&\+\_\+pixels)
+\item 
+\mbox{\Hypertarget{class_large_image_a3ac029a1cb3504320368b4f73541eeab}\label{class_large_image_a3ac029a1cb3504320368b4f73541eeab}} 
+{\bfseries Large\+Image} (int \+\_\+number\+\_\+subimages, int \+\_\+channels, int \+\_\+width, int \+\_\+height, int \+\_\+padding, int \+\_\+classification, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ uint8\+\_\+t $>$ $>$ $>$ \&\+\_\+pixels, const \textbf{ vector}$<$ \textbf{ vector}$<$ uint8\+\_\+t $>$ $>$ \&\+\_\+alpha)
+\item 
+\mbox{\Hypertarget{class_large_image_a4fc7ac1ffabc00af459a884c8c9d34b7}\label{class_large_image_a4fc7ac1ffabc00af459a884c8c9d34b7}} 
+int {\bfseries get\+\_\+classification} () const
+\item 
+\mbox{\Hypertarget{class_large_image_aef358a8476e1a4de74490ecdeba2312d}\label{class_large_image_aef358a8476e1a4de74490ecdeba2312d}} 
+int {\bfseries get\+\_\+number\+\_\+subimages} () const
+\item 
+\mbox{\Hypertarget{class_large_image_a02c99add76f7c666f16ba10e3ad5cfef}\label{class_large_image_a02c99add76f7c666f16ba10e3ad5cfef}} 
+int {\bfseries get\+\_\+channels} () const
+\item 
+\mbox{\Hypertarget{class_large_image_a31ef96819089a47675fd3693b04c139d}\label{class_large_image_a31ef96819089a47675fd3693b04c139d}} 
+int {\bfseries get\+\_\+height} () const
+\item 
+\mbox{\Hypertarget{class_large_image_a10f59a23c9098f07ac3df958ce58ad86}\label{class_large_image_a10f59a23c9098f07ac3df958ce58ad86}} 
+int {\bfseries get\+\_\+width} () const
+\item 
+\mbox{\Hypertarget{class_large_image_a40ee039fc8f05aa763287cee3bd678a8}\label{class_large_image_a40ee039fc8f05aa763287cee3bd678a8}} 
+void {\bfseries scale\+\_\+0\+\_\+1} ()
+\item 
+\mbox{\Hypertarget{class_large_image_ae279bb3875461ae63e22cdee43834178}\label{class_large_image_ae279bb3875461ae63e22cdee43834178}} 
+void {\bfseries get\+\_\+pixel\+\_\+avg} (\textbf{ vector}$<$ float $>$ \&channel\+\_\+avgs) const
+\item 
+\mbox{\Hypertarget{class_large_image_a98d1b69620d083165532943ba5ac8524}\label{class_large_image_a98d1b69620d083165532943ba5ac8524}} 
+void {\bfseries get\+\_\+pixel\+\_\+variance} (const \textbf{ vector}$<$ float $>$ \&channel\+\_\+avgs, \textbf{ vector}$<$ float $>$ \&channel\+\_\+variances) const
+\item 
+\mbox{\Hypertarget{class_large_image_a0527c2170e359b9686aa852bf405da18}\label{class_large_image_a0527c2170e359b9686aa852bf405da18}} 
+void {\bfseries normalize} (const \textbf{ vector}$<$ float $>$ \&channel\+\_\+avgs, const \textbf{ vector}$<$ float $>$ \&channel\+\_\+std\+\_\+dev)
+\item 
+\mbox{\Hypertarget{class_large_image_a159b2becc98cdfc4fdf026eae66dafe6}\label{class_large_image_a159b2becc98cdfc4fdf026eae66dafe6}} 
+void {\bfseries print} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_large_image_a1da4a439bb3907b43e49dc41e713cff5}\label{class_large_image_a1da4a439bb3907b43e49dc41e713cff5}} 
+uint8\+\_\+t {\bfseries get\+\_\+pixel\+\_\+unnormalized} (int z, int y, int x) const
+\item 
+\mbox{\Hypertarget{class_large_image_aff8fe834610a75b57ebbf65827788bf9}\label{class_large_image_aff8fe834610a75b57ebbf65827788bf9}} 
+uint8\+\_\+t {\bfseries get\+\_\+alpha\+\_\+unnormalized} (int y, int x) const
+\item 
+\mbox{\Hypertarget{class_large_image_afc055d776b19b7c787cfc81ba3aba749}\label{class_large_image_afc055d776b19b7c787cfc81ba3aba749}} 
+void {\bfseries set\+\_\+pixel} (int z, int y, int x, uint8\+\_\+t value)
+\item 
+\mbox{\Hypertarget{class_large_image_a4360cdcdb238b119173059749edb821c}\label{class_large_image_a4360cdcdb238b119173059749edb821c}} 
+uint8\+\_\+t {\bfseries get\+\_\+pixel} (int z, int y, int x) const
+\item 
+\mbox{\Hypertarget{class_large_image_a2dfa7e90751535d5524eb2e73c71160a}\label{class_large_image_a2dfa7e90751535d5524eb2e73c71160a}} 
+void {\bfseries set\+\_\+alpha} (const \textbf{ vector}$<$ \textbf{ vector}$<$ uint8\+\_\+t $>$ $>$ \&\+\_\+alpha)
+\item 
+\mbox{\Hypertarget{class_large_image_a7a8dc92927e6f7f6e00f5ac03cec46f6}\label{class_large_image_a7a8dc92927e6f7f6e00f5ac03cec46f6}} 
+void {\bfseries set\+\_\+alpha} (const \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ \&\+\_\+alpha)
+\item 
+\mbox{\Hypertarget{class_large_image_aa4f6dd3a4823c4d26dad07fe1d9be5c1}\label{class_large_image_aa4f6dd3a4823c4d26dad07fe1d9be5c1}} 
+\mbox{\hyperlink{class_large_image}{Large\+Image}} $\ast$ {\bfseries copy} () const
+\item 
+\mbox{\Hypertarget{class_large_image_a6500eafbabf95ef66261443b94f04481}\label{class_large_image_a6500eafbabf95ef66261443b94f04481}} 
+void {\bfseries draw\+\_\+png} (\textbf{ string} filename) const
+\item 
+\mbox{\Hypertarget{class_large_image_a9559ca003f4dda91ee43cce77bfda5ca}\label{class_large_image_a9559ca003f4dda91ee43cce77bfda5ca}} 
+void {\bfseries draw\+\_\+png\+\_\+4channel} (\textbf{ string} filename) const
+\item 
+\mbox{\Hypertarget{class_large_image_a04bf20b00c76dacc5d12a7796b86b6a8}\label{class_large_image_a04bf20b00c76dacc5d12a7796b86b6a8}} 
+void {\bfseries draw\+\_\+png\+\_\+alpha} (\textbf{ string} filename) const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_large_image_a58eef48962c16c7ca837894cf4f77535}\label{class_large_image_a58eef48962c16c7ca837894cf4f77535}} 
+int {\bfseries number\+\_\+subimages}
+\item 
+\mbox{\Hypertarget{class_large_image_a0f0a4e62717b17314dd7b08d6f8cceb8}\label{class_large_image_a0f0a4e62717b17314dd7b08d6f8cceb8}} 
+int {\bfseries padding}
+\item 
+\mbox{\Hypertarget{class_large_image_a87f7467f6da134b04186643fb492098f}\label{class_large_image_a87f7467f6da134b04186643fb492098f}} 
+int {\bfseries channels}
+\item 
+\mbox{\Hypertarget{class_large_image_ad5b592d320336f9cfa242325290fbf5b}\label{class_large_image_ad5b592d320336f9cfa242325290fbf5b}} 
+int {\bfseries height}
+\item 
+\mbox{\Hypertarget{class_large_image_ac6fcdfd1d1ef8ba42501fb78d3d6ae6d}\label{class_large_image_ac6fcdfd1d1ef8ba42501fb78d3d6ae6d}} 
+int {\bfseries width}
+\item 
+\mbox{\Hypertarget{class_large_image_a0b0e6df79566c32d4f65a2fc936c172b}\label{class_large_image_a0b0e6df79566c32d4f65a2fc936c172b}} 
+int {\bfseries classification}
+\item 
+\mbox{\Hypertarget{class_large_image_a6a80cd73f3e1564cfef64022420a77cd}\label{class_large_image_a6a80cd73f3e1564cfef64022420a77cd}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ uint8\+\_\+t $>$ $>$ $>$ {\bfseries pixels}
+\item 
+\mbox{\Hypertarget{class_large_image_aca0fcf094ed3c4c27cff032398afef30}\label{class_large_image_aca0fcf094ed3c4c27cff032398afef30}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ uint8\+\_\+t $>$ $>$ {\bfseries alpha}
+\item 
+\mbox{\Hypertarget{class_large_image_aa1eb933aebd546a8e3ed87a2f13d0114}\label{class_large_image_aa1eb933aebd546a8e3ed87a2f13d0114}} 
+const \mbox{\hyperlink{class_large_images}{Large\+Images}} $\ast$ {\bfseries images}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_large_image_a5368e97073c7df237833cef145d563a0}\label{class_large_image_a5368e97073c7df237833cef145d563a0}} 
+class {\bfseries Large\+Images}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/large\+\_\+image\+\_\+set.\+hxx\item 
+image\+\_\+tools/large\+\_\+image\+\_\+set.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_large_images.eps b/docs/latex/class_large_images.eps
new file mode 100644
index 00000000..841f123a
--- /dev/null
+++ b/docs/latex/class_large_images.eps
@@ -0,0 +1,203 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
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+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 441.176471
+%%Pages: 0
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+%%EndSetup
+%%EndComments
+
+% ----- variables -----
+
+/boxwidth 0 def
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+/disty 40 def
+/boundaspect 1.133333 def  % aspect ratio of the BoundingBox (width/height)
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+/boxfont /Times-Roman findfont fontheight scalefont def
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+% ----- procedures -----
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+  a b gt {a} {b} ifelse
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+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
+} def
+
+/box % draws a box with text 'arg1' at grid pos (arg2,arg3)
+{ gsave
+  2 setlinewidth
+  newpath
+  exch xspacing mul xoffset add
+  exch yspacing mul
+  moveto
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+  rmoveto show stroke
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+{ newpath
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+{ newpath
+  moveto
+  3 -8 rlineto
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+  closepath
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+  stroke
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+
+/out % draws an output connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
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+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
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+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
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+
+/vedge
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+
+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
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+  newpath
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+  rlineto
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+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(LargeImages) cw
+(MultiImagesInterface) cw
+(ImagesInterface) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (LargeImages) 0.000000 0.000000 box
+ (MultiImagesInterface) 0.000000 1.000000 box
+ (ImagesInterface) 0.000000 2.000000 box
+
+% ----- relations -----
+
+solid
+0 0.000000 0.000000 out
+solid
+1 0.000000 1.000000 in
+solid
+0 0.000000 1.000000 out
+solid
+1 0.000000 2.000000 in
diff --git a/docs/latex/class_large_images.tex b/docs/latex/class_large_images.tex
new file mode 100644
index 00000000..ca132556
--- /dev/null
+++ b/docs/latex/class_large_images.tex
@@ -0,0 +1,134 @@
+\hypertarget{class_large_images}{}\doxysection{Large\+Images Class Reference}
+\label{class_large_images}\index{LargeImages@{LargeImages}}
+Inheritance diagram for Large\+Images\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=3.000000cm]{class_large_images}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_large_images_abae9d7a5e94f6956a235cbc8f6162b58}\label{class_large_images_abae9d7a5e94f6956a235cbc8f6162b58}} 
+int {\bfseries read\+\_\+images\+\_\+from\+\_\+file} (\textbf{ string} binary\+\_\+filename)
+\item 
+\mbox{\Hypertarget{class_large_images_a3b988b76312653dc9bcee497646a79f5}\label{class_large_images_a3b988b76312653dc9bcee497646a79f5}} 
+{\bfseries Large\+Images} (\textbf{ string} binary\+\_\+filename, int \+\_\+padding, int \+\_\+subimage\+\_\+height, int \+\_\+subimage\+\_\+width)
+\item 
+\mbox{\Hypertarget{class_large_images_ae532aed17a1a0c402c051a729ef1d031}\label{class_large_images_ae532aed17a1a0c402c051a729ef1d031}} 
+{\bfseries Large\+Images} (\textbf{ string} binary\+\_\+filename, int \+\_\+padding, int \+\_\+subimage\+\_\+height, int \+\_\+subimage\+\_\+width, const \textbf{ vector}$<$ float $>$ \&\+\_\+channel\+\_\+avg, const \textbf{ vector}$<$ float $>$ \&channel\+\_\+std\+\_\+dev)
+\item 
+\mbox{\Hypertarget{class_large_images_a861f894a38271f805403af8636eb812b}\label{class_large_images_a861f894a38271f805403af8636eb812b}} 
+\textbf{ string} {\bfseries get\+\_\+filename} () const
+\item 
+\mbox{\Hypertarget{class_large_images_a775cf9aa65329ae44e6bdb4ec85eef8b}\label{class_large_images_a775cf9aa65329ae44e6bdb4ec85eef8b}} 
+int {\bfseries get\+\_\+class\+\_\+size} (int i) const
+\item 
+\mbox{\Hypertarget{class_large_images_ac718faad0873e9486ccd39b63197f525}\label{class_large_images_ac718faad0873e9486ccd39b63197f525}} 
+int {\bfseries get\+\_\+number\+\_\+classes} () const
+\item 
+\mbox{\Hypertarget{class_large_images_a9cac1e44ff386b147896cf28a8624d7f}\label{class_large_images_a9cac1e44ff386b147896cf28a8624d7f}} 
+int {\bfseries get\+\_\+number\+\_\+images} () const
+\item 
+\mbox{\Hypertarget{class_large_images_a862c96a0510e96541b806c0d20a89701}\label{class_large_images_a862c96a0510e96541b806c0d20a89701}} 
+int {\bfseries get\+\_\+number\+\_\+large\+\_\+images} () const
+\item 
+\mbox{\Hypertarget{class_large_images_aadf7bebac3373bd03fcbbf4e7ab910da}\label{class_large_images_aadf7bebac3373bd03fcbbf4e7ab910da}} 
+int {\bfseries get\+\_\+number\+\_\+subimages} (int i) const
+\item 
+\mbox{\Hypertarget{class_large_images_a9d8ada5c6eb90371b96689f85c319365}\label{class_large_images_a9d8ada5c6eb90371b96689f85c319365}} 
+int {\bfseries get\+\_\+padding} () const
+\item 
+\mbox{\Hypertarget{class_large_images_a99649e9453ee5b4876ee5a457db3e97c}\label{class_large_images_a99649e9453ee5b4876ee5a457db3e97c}} 
+int {\bfseries get\+\_\+image\+\_\+channels} () const
+\item 
+\mbox{\Hypertarget{class_large_images_ae921fcdf3aa98b5828da0c12ee2a6d01}\label{class_large_images_ae921fcdf3aa98b5828da0c12ee2a6d01}} 
+int {\bfseries get\+\_\+image\+\_\+width} () const
+\item 
+\mbox{\Hypertarget{class_large_images_af7ee7177aed41a82533d7dedd62fc727}\label{class_large_images_af7ee7177aed41a82533d7dedd62fc727}} 
+int {\bfseries get\+\_\+image\+\_\+height} () const
+\item 
+\mbox{\Hypertarget{class_large_images_a077fef6341653d7075a38b95ef9e11ee}\label{class_large_images_a077fef6341653d7075a38b95ef9e11ee}} 
+int {\bfseries get\+\_\+large\+\_\+image\+\_\+channels} (int image) const
+\item 
+\mbox{\Hypertarget{class_large_images_a00264c01a319140eecbc8ee05b40cf3e}\label{class_large_images_a00264c01a319140eecbc8ee05b40cf3e}} 
+int {\bfseries get\+\_\+large\+\_\+image\+\_\+width} (int image) const
+\item 
+\mbox{\Hypertarget{class_large_images_aae1ce6b40bfc9f5fd3e81d7afc1a2baf}\label{class_large_images_aae1ce6b40bfc9f5fd3e81d7afc1a2baf}} 
+int {\bfseries get\+\_\+large\+\_\+image\+\_\+height} (int image) const
+\item 
+\mbox{\Hypertarget{class_large_images_aa7c303b7d91848d8ed55fde1d4e08f22}\label{class_large_images_aa7c303b7d91848d8ed55fde1d4e08f22}} 
+int {\bfseries get\+\_\+image\+\_\+classification} (int image) const
+\item 
+\mbox{\Hypertarget{class_large_images_a0df9f112a2a1674a78914eede69feb48}\label{class_large_images_a0df9f112a2a1674a78914eede69feb48}} 
+int {\bfseries get\+\_\+classification} (int subimage) const
+\item 
+\mbox{\Hypertarget{class_large_images_ab5aa13812806d6308695e0b3f13b9cd2}\label{class_large_images_ab5aa13812806d6308695e0b3f13b9cd2}} 
+float {\bfseries get\+\_\+pixel} (int subimage, int z, int y, int x) const
+\item 
+\mbox{\Hypertarget{class_large_images_a041172239fd1685606a891bc2787a9e2}\label{class_large_images_a041172239fd1685606a891bc2787a9e2}} 
+float {\bfseries get\+\_\+raw\+\_\+pixel} (int subimage, int z, int y, int x) const
+\item 
+\mbox{\Hypertarget{class_large_images_ab7609a02aa77b62f0cacd463469a9660}\label{class_large_images_ab7609a02aa77b62f0cacd463469a9660}} 
+void {\bfseries calculate\+\_\+avg\+\_\+std\+\_\+dev} ()
+\item 
+\mbox{\Hypertarget{class_large_images_ada525689c70283770c1f25cee6925872}\label{class_large_images_ada525689c70283770c1f25cee6925872}} 
+float {\bfseries get\+\_\+channel\+\_\+avg} (int channel) const
+\item 
+\mbox{\Hypertarget{class_large_images_a8e8ac5408d261787e60da968d488743c}\label{class_large_images_a8e8ac5408d261787e60da968d488743c}} 
+float {\bfseries get\+\_\+channel\+\_\+std\+\_\+dev} (int channel) const
+\item 
+\mbox{\Hypertarget{class_large_images_abbc43c063eb314581c35e15b9a0b5023}\label{class_large_images_abbc43c063eb314581c35e15b9a0b5023}} 
+const \textbf{ vector}$<$ float $>$ \& {\bfseries get\+\_\+average} () const
+\item 
+\mbox{\Hypertarget{class_large_images_aae227d9f39bdbdf6cc43fe41ee69797b}\label{class_large_images_aae227d9f39bdbdf6cc43fe41ee69797b}} 
+const \textbf{ vector}$<$ float $>$ \& {\bfseries get\+\_\+std\+\_\+dev} () const
+\item 
+\mbox{\Hypertarget{class_large_images_a573af65747c205865387aa19b7dc1a1e}\label{class_large_images_a573af65747c205865387aa19b7dc1a1e}} 
+void {\bfseries normalize} ()
+\item 
+\mbox{\Hypertarget{class_large_images_ab33ecc4e2e4cd1a8b9d1a32274f8cbfd}\label{class_large_images_ab33ecc4e2e4cd1a8b9d1a32274f8cbfd}} 
+\mbox{\hyperlink{class_large_image}{Large\+Image}} $\ast$ {\bfseries copy\+\_\+image} (int i) const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_large_images_a0ea05822e1f124cb50230a027ba76103}\label{class_large_images_a0ea05822e1f124cb50230a027ba76103}} 
+\textbf{ string} {\bfseries filename}
+\item 
+\mbox{\Hypertarget{class_large_images_aaf3761bc4b42a96ea1552b03804a39eb}\label{class_large_images_aaf3761bc4b42a96ea1552b03804a39eb}} 
+int {\bfseries number\+\_\+classes}
+\item 
+\mbox{\Hypertarget{class_large_images_a782d49aa1b2a6a3b6b2420a89c2c59f5}\label{class_large_images_a782d49aa1b2a6a3b6b2420a89c2c59f5}} 
+int {\bfseries number\+\_\+images}
+\item 
+\mbox{\Hypertarget{class_large_images_aa12320b3af74e854688c9b54b441d55f}\label{class_large_images_aa12320b3af74e854688c9b54b441d55f}} 
+\textbf{ vector}$<$ int $>$ {\bfseries class\+\_\+sizes}
+\item 
+\mbox{\Hypertarget{class_large_images_aaab29ddb98cee4392a61d6611c7661fa}\label{class_large_images_aaab29ddb98cee4392a61d6611c7661fa}} 
+int {\bfseries padding}
+\item 
+\mbox{\Hypertarget{class_large_images_a6fa158fb9a68a1b05c1d90a8fba093e7}\label{class_large_images_a6fa158fb9a68a1b05c1d90a8fba093e7}} 
+int {\bfseries channels}
+\item 
+\mbox{\Hypertarget{class_large_images_a6a2819069b91ce022bd494cc5e4a91e3}\label{class_large_images_a6a2819069b91ce022bd494cc5e4a91e3}} 
+int {\bfseries subimage\+\_\+width}
+\item 
+\mbox{\Hypertarget{class_large_images_a7a653c34470307851becf592e774d877}\label{class_large_images_a7a653c34470307851becf592e774d877}} 
+int {\bfseries subimage\+\_\+height}
+\item 
+\mbox{\Hypertarget{class_large_images_a831f085192a46be28a0c75934591ad3d}\label{class_large_images_a831f085192a46be28a0c75934591ad3d}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_large_image}{Large\+Image}} $>$ {\bfseries images}
+\item 
+\mbox{\Hypertarget{class_large_images_a5edb43a808cacb2bc21ce46d123dc05f}\label{class_large_images_a5edb43a808cacb2bc21ce46d123dc05f}} 
+\textbf{ vector}$<$ float $>$ {\bfseries channel\+\_\+avg}
+\item 
+\mbox{\Hypertarget{class_large_images_ac45b1f977e41d511db018dd9bcae003a}\label{class_large_images_ac45b1f977e41d511db018dd9bcae003a}} 
+\textbf{ vector}$<$ float $>$ {\bfseries channel\+\_\+std\+\_\+dev}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/large\+\_\+image\+\_\+set.\+hxx\item 
+image\+\_\+tools/large\+\_\+image\+\_\+set.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_line.tex b/docs/latex/class_line.tex
new file mode 100644
index 00000000..39cb7860
--- /dev/null
+++ b/docs/latex/class_line.tex
@@ -0,0 +1,29 @@
+\hypertarget{class_line}{}\doxysection{Line Class Reference}
+\label{class_line}\index{Line@{Line}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_line_a495909e935abfa7fe77a47be7a733a8d}\label{class_line_a495909e935abfa7fe77a47be7a733a8d}} 
+{\bfseries Line} (int \+\_\+y1, int \+\_\+x1, int \+\_\+y2, int \+\_\+x2)
+\end{DoxyCompactItemize}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_line_a850c96af61bd595a68b5e867540204f1}\label{class_line_a850c96af61bd595a68b5e867540204f1}} 
+int {\bfseries y1}
+\item 
+\mbox{\Hypertarget{class_line_a1c37aeef714f6c96454c2a9a2dadb69a}\label{class_line_a1c37aeef714f6c96454c2a9a2dadb69a}} 
+int {\bfseries x1}
+\item 
+\mbox{\Hypertarget{class_line_ae31c92ab0df730a2fdd34201ce6feb9d}\label{class_line_ae31c92ab0df730a2fdd34201ce6feb9d}} 
+int {\bfseries y2}
+\item 
+\mbox{\Hypertarget{class_line_a4f08d1038eba337d6f0fb32713e528f1}\label{class_line_a4f08d1038eba337d6f0fb32713e528f1}} 
+int {\bfseries x2}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/mosaic\+\_\+image\+\_\+set.\+hxx\item 
+image\+\_\+tools/mosaic\+\_\+image\+\_\+set.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_log.tex b/docs/latex/class_log.tex
new file mode 100644
index 00000000..5534442e
--- /dev/null
+++ b/docs/latex/class_log.tex
@@ -0,0 +1,452 @@
+\hypertarget{class_log}{}\doxysection{Log Class Reference}
+\label{class_log}\index{Log@{Log}}
+\doxysubsection*{Static Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+static void \mbox{\hyperlink{class_log_a1e95d22090ba14b096609c67487f9761}{register\+\_\+command\+\_\+line\+\_\+arguments}} ()
+\begin{DoxyCompactList}\small\item\em Registers used command line arguments and instructions with the Command\+Line class. \end{DoxyCompactList}\item 
+static \textbf{ int8\+\_\+t} \mbox{\hyperlink{class_log_a92a5eb55bc8e480aa984d6d592f07d69}{parse\+\_\+level\+\_\+from\+\_\+string}} (\textbf{ string} level)
+\item 
+static void \mbox{\hyperlink{class_log_afc35697517d849ab8cf4a774d2b32ba8}{initialize}} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&arguments)
+\begin{DoxyCompactList}\small\item\em Initializes the \mbox{\hyperlink{class_log}{Log}} given arguments retreived from the Command\+Line class. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a6183417026fe34b0d1494f1504b52b8f}{set\+\_\+rank}} (\textbf{ int32\+\_\+t} \+\_\+process\+\_\+rank)
+\begin{DoxyCompactList}\small\item\em Sets the M\+PI process rank for this \mbox{\hyperlink{class_log}{Log}}. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a4718a27c58db20d66ac3c511931d475b}{restrict\+\_\+to\+\_\+rank}} (\textbf{ int32\+\_\+t} \+\_\+restricted\+\_\+rank)
+\begin{DoxyCompactList}\small\item\em Specifies which M\+PI process to allow messages from. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_a1cecca268a9c418480a0ac325303f7a0}\label{class_log_a1cecca268a9c418480a0ac325303f7a0}} 
+static void \mbox{\hyperlink{class_log_a1cecca268a9c418480a0ac325303f7a0}{clear\+\_\+rank\+\_\+restriction}} ()
+\begin{DoxyCompactList}\small\item\em Clears the M\+PI process rank restriction from messages allowing any process to write to the log (sets \mbox{\hyperlink{class_log_a47ec200a53bfc6b8b6a39bc91d5dbc86}{Log\+::restricted\+\_\+rank}} back to -\/1). \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_ac02fea24138d69a35521d82ee64bb90d}{set\+\_\+id}} (\textbf{ string} human\+\_\+readable\+\_\+id)
+\begin{DoxyCompactList}\small\item\em Sets a human readable thread id for this thread. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_aecae136e87aadf153c98f4f1f92ac44f}{release\+\_\+id}} (\textbf{ string} human\+\_\+readable\+\_\+id)
+\begin{DoxyCompactList}\small\item\em Releases a the human readable thread id previously set by by the provided human readable id;. \end{DoxyCompactList}\item 
+static bool \mbox{\hyperlink{class_log_afdfbb3c30e059607ccf10a6ef5e0de9a}{at\+\_\+level}} (\textbf{ int8\+\_\+t} level)
+\begin{DoxyCompactList}\small\item\em Determines if either output level (the file or standard output) level is above the level passed as a parameter. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a805517b44b61d2b5151a2f4794596a7e}{fatal}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs a fatal message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a89f6eebb445913e66423614839225db2}{error}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs an error message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a477d1ab8cce3a2ef12cb8006fa3c6bf5}{warning}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs a warning message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_adb225c396180e0d8f73580e71eae6554}{info}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs an info message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a044ee1254485cb519d0576dc71103f0a}{debug}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs a debug message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_ad0d504bc7f5957a814e9de5ea08f982a}{trace}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs a trace message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_ad2850dbb9d26c84c3fc2bcecc93493d6}{fatal\+\_\+no\+\_\+header}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs a fatal message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_ac3e898dc093679bb7d1e3a3f98872158}{error\+\_\+no\+\_\+header}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs an error message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a9bbfa4b8f4fb2262d914f00ba04dd6c6}{warning\+\_\+no\+\_\+header}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs a warning message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a4b4380a986ebf18e448221d78a236bc3}{info\+\_\+no\+\_\+header}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs an info message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a6c4b9de38585df6c03defcbe0e420268}{debug\+\_\+no\+\_\+header}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs a debug message. \end{DoxyCompactList}\item 
+static void \mbox{\hyperlink{class_log_a5eca5217a6fc23a54cff35ff12ad04f6}{trace\+\_\+no\+\_\+header}} (const char $\ast$format,...)
+\begin{DoxyCompactList}\small\item\em Logs a trace message. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_log_a44e61f1a4560b557bd8b3374cd87e0e3}\label{class_log_a44e61f1a4560b557bd8b3374cd87e0e3}} 
+static const int8\+\_\+t \mbox{\hyperlink{class_log_a44e61f1a4560b557bd8b3374cd87e0e3}{N\+O\+NE}} = 0
+\begin{DoxyCompactList}\small\item\em Specifies no messages will be logged. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_a829c89b207740611e743a6e2f07e477f}\label{class_log_a829c89b207740611e743a6e2f07e477f}} 
+static const int8\+\_\+t \mbox{\hyperlink{class_log_a829c89b207740611e743a6e2f07e477f}{F\+A\+T\+AL}} = 1
+\begin{DoxyCompactList}\small\item\em Specifies only fatal messages will be logged. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_af3c3afdba50a451fd24b6014a9f6e427}\label{class_log_af3c3afdba50a451fd24b6014a9f6e427}} 
+static const int8\+\_\+t \mbox{\hyperlink{class_log_af3c3afdba50a451fd24b6014a9f6e427}{E\+R\+R\+OR}} = 2
+\begin{DoxyCompactList}\small\item\em Specifies error and above messages will be logged. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_a02c6c399678d6687f38c6600751aa2e7}\label{class_log_a02c6c399678d6687f38c6600751aa2e7}} 
+static const int8\+\_\+t \mbox{\hyperlink{class_log_a02c6c399678d6687f38c6600751aa2e7}{W\+A\+R\+N\+I\+NG}} = 3
+\begin{DoxyCompactList}\small\item\em Specifies warning and above messages will be logged. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_a70efafdaaf797f644bb24a8e1c7f5643}\label{class_log_a70efafdaaf797f644bb24a8e1c7f5643}} 
+static const int8\+\_\+t \mbox{\hyperlink{class_log_a70efafdaaf797f644bb24a8e1c7f5643}{I\+N\+FO}} = 4
+\begin{DoxyCompactList}\small\item\em Specifies info and above messages will be logged. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_addf4eb67a84c9ee39ed3028005f25e40}\label{class_log_addf4eb67a84c9ee39ed3028005f25e40}} 
+static const int8\+\_\+t \mbox{\hyperlink{class_log_addf4eb67a84c9ee39ed3028005f25e40}{D\+E\+B\+UG}} = 5
+\begin{DoxyCompactList}\small\item\em Specifies debug and above messages will be logged. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_a696a49a4d58146f0ee69be1562991e12}\label{class_log_a696a49a4d58146f0ee69be1562991e12}} 
+static const int8\+\_\+t \mbox{\hyperlink{class_log_a696a49a4d58146f0ee69be1562991e12}{T\+R\+A\+CE}} = 6
+\begin{DoxyCompactList}\small\item\em Specifies trace and above messages will be logged. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_a4249272125f8149b2d042101bcc6b49f}\label{class_log_a4249272125f8149b2d042101bcc6b49f}} 
+static const int8\+\_\+t \mbox{\hyperlink{class_log_a4249272125f8149b2d042101bcc6b49f}{A\+LL}} = 7
+\begin{DoxyCompactList}\small\item\em Specifies all messages will be logged. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\doxysubsection*{Static Private Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+static void \mbox{\hyperlink{class_log_aff6a4531e693fd53ad051c7fef28c6aa}{write\+\_\+message}} (bool print\+\_\+header, \textbf{ int8\+\_\+t} message\+\_\+level, const char $\ast$message\+\_\+type, const char $\ast$format, \textbf{ va\+\_\+list} arguments)
+\begin{DoxyCompactList}\small\item\em Potentially writes the message to either standard output or the log file if the message level is high enough. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\doxysubsection*{Static Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+static int32\+\_\+t \mbox{\hyperlink{class_log_a633c6eafa442ecfb3b3322f89496e52e}{std\+\_\+message\+\_\+level}} = \mbox{\hyperlink{class_log_a70efafdaaf797f644bb24a8e1c7f5643}{I\+N\+FO}}
+\begin{DoxyCompactList}\small\item\em Specifies which messages to log. \end{DoxyCompactList}\item 
+static int32\+\_\+t \mbox{\hyperlink{class_log_a08b261dd43ff89110e602a3a61f6ec61}{file\+\_\+message\+\_\+level}} = \mbox{\hyperlink{class_log_a70efafdaaf797f644bb24a8e1c7f5643}{I\+N\+FO}}
+\begin{DoxyCompactList}\small\item\em Specifies which messages to log. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_a20bd437aa24965f6e9650fd5e2d48923}\label{class_log_a20bd437aa24965f6e9650fd5e2d48923}} 
+static bool \mbox{\hyperlink{class_log_a20bd437aa24965f6e9650fd5e2d48923}{write\+\_\+to\+\_\+file}} = true
+\begin{DoxyCompactList}\small\item\em Specifies if the logs should also be written to a flie. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_aec94f82d0ed91efcb398ce15f2f14a34}\label{class_log_aec94f82d0ed91efcb398ce15f2f14a34}} 
+static int32\+\_\+t \mbox{\hyperlink{class_log_aec94f82d0ed91efcb398ce15f2f14a34}{max\+\_\+header\+\_\+length}} = 256
+\begin{DoxyCompactList}\small\item\em Specifies the maximum length for the message header. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_a5503fcf17f82f95b1090a797af98343c}\label{class_log_a5503fcf17f82f95b1090a797af98343c}} 
+static int32\+\_\+t \mbox{\hyperlink{class_log_a5503fcf17f82f95b1090a797af98343c}{max\+\_\+message\+\_\+length}} = 1024
+\begin{DoxyCompactList}\small\item\em Specifies the maximum message buffer length. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_a18dc29ac4d511d8eab1bb9bc5771e7bf}\label{class_log_a18dc29ac4d511d8eab1bb9bc5771e7bf}} 
+static \textbf{ string} \mbox{\hyperlink{class_log_a18dc29ac4d511d8eab1bb9bc5771e7bf}{output\+\_\+directory}} = \char`\"{}./logs\char`\"{}
+\begin{DoxyCompactList}\small\item\em Specifies which directory to write the log files to (if the logs are being writtten to a file). \end{DoxyCompactList}\item 
+static \textbf{ map}$<$ thread\+::id, \textbf{ string} $>$ \mbox{\hyperlink{class_log_a814d0d060c29987d5d43d55b3d8d542c}{log\+\_\+ids}}
+\begin{DoxyCompactList}\small\item\em A map of C++ thread ids (which are not human readable) to human readable integer ids. \end{DoxyCompactList}\item 
+static int32\+\_\+t \mbox{\hyperlink{class_log_ad6bd8ce041323bb69e69aeb9edbe12ee}{process\+\_\+rank}} = -\/1
+\begin{DoxyCompactList}\small\item\em The M\+PI process rank for this \mbox{\hyperlink{class_log}{Log}} instance. \end{DoxyCompactList}\item 
+static int32\+\_\+t \mbox{\hyperlink{class_log_a47ec200a53bfc6b8b6a39bc91d5dbc86}{restricted\+\_\+rank}} = -\/1
+\begin{DoxyCompactList}\small\item\em Defaults at -\/1, when set to a process rank ($>$= 0) the \mbox{\hyperlink{class_log}{Log}} will only print messages if its rank is the same as the restricted rank. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_log_afe8e50d6e52f39d4ed931f13eb49af5f}\label{class_log_afe8e50d6e52f39d4ed931f13eb49af5f}} 
+static \textbf{ map}$<$ \textbf{ string}, \mbox{\hyperlink{class_log_file}{Log\+File}} $\ast$ $>$ \mbox{\hyperlink{class_log_afe8e50d6e52f39d4ed931f13eb49af5f}{output\+\_\+files}}
+\begin{DoxyCompactList}\small\item\em A map of human readable ids to output files which the log messages will be written to. \end{DoxyCompactList}\item 
+static shared\+\_\+mutex \mbox{\hyperlink{class_log_aa8bf3e23cf88dc4e48aafd791fe93cd7}{log\+\_\+ids\+\_\+mutex}}
+\begin{DoxyCompactList}\small\item\em A std\+::shared\+\_\+mutex protecting the Log\+::thread\+\_\+ids map. \end{DoxyCompactList}\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_log_afdfbb3c30e059607ccf10a6ef5e0de9a}\label{class_log_afdfbb3c30e059607ccf10a6ef5e0de9a}} 
+\index{Log@{Log}!at\_level@{at\_level}}
+\index{at\_level@{at\_level}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{at\_level()}{at\_level()}}
+{\footnotesize\ttfamily bool Log\+::at\+\_\+level (\begin{DoxyParamCaption}\item[{\textbf{ int8\+\_\+t}}]{level }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Determines if either output level (the file or standard output) level is above the level passed as a parameter. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em level} & is the level to be greater than or equal to\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+true if either the file or standard output level is greater than or equal to the passed level 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_log_a044ee1254485cb519d0576dc71103f0a}\label{class_log_a044ee1254485cb519d0576dc71103f0a}} 
+\index{Log@{Log}!debug@{debug}}
+\index{debug@{debug}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{debug()}{debug()}}
+{\footnotesize\ttfamily void Log\+::debug (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs a debug message. 
+
+varargs are the same as in printf. \mbox{\Hypertarget{class_log_a6c4b9de38585df6c03defcbe0e420268}\label{class_log_a6c4b9de38585df6c03defcbe0e420268}} 
+\index{Log@{Log}!debug\_no\_header@{debug\_no\_header}}
+\index{debug\_no\_header@{debug\_no\_header}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{debug\_no\_header()}{debug\_no\_header()}}
+{\footnotesize\ttfamily void Log\+::debug\+\_\+no\+\_\+header (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs a debug message. 
+
+Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. \mbox{\Hypertarget{class_log_a89f6eebb445913e66423614839225db2}\label{class_log_a89f6eebb445913e66423614839225db2}} 
+\index{Log@{Log}!error@{error}}
+\index{error@{error}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{error()}{error()}}
+{\footnotesize\ttfamily void Log\+::error (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs an error message. 
+
+varargs are the same as in printf. \mbox{\Hypertarget{class_log_ac3e898dc093679bb7d1e3a3f98872158}\label{class_log_ac3e898dc093679bb7d1e3a3f98872158}} 
+\index{Log@{Log}!error\_no\_header@{error\_no\_header}}
+\index{error\_no\_header@{error\_no\_header}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{error\_no\_header()}{error\_no\_header()}}
+{\footnotesize\ttfamily void Log\+::error\+\_\+no\+\_\+header (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs an error message. 
+
+Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. \mbox{\Hypertarget{class_log_a805517b44b61d2b5151a2f4794596a7e}\label{class_log_a805517b44b61d2b5151a2f4794596a7e}} 
+\index{Log@{Log}!fatal@{fatal}}
+\index{fatal@{fatal}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{fatal()}{fatal()}}
+{\footnotesize\ttfamily void Log\+::fatal (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs a fatal message. 
+
+varargs are the same as in printf. \mbox{\Hypertarget{class_log_ad2850dbb9d26c84c3fc2bcecc93493d6}\label{class_log_ad2850dbb9d26c84c3fc2bcecc93493d6}} 
+\index{Log@{Log}!fatal\_no\_header@{fatal\_no\_header}}
+\index{fatal\_no\_header@{fatal\_no\_header}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{fatal\_no\_header()}{fatal\_no\_header()}}
+{\footnotesize\ttfamily void Log\+::fatal\+\_\+no\+\_\+header (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs a fatal message. 
+
+Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. \mbox{\Hypertarget{class_log_adb225c396180e0d8f73580e71eae6554}\label{class_log_adb225c396180e0d8f73580e71eae6554}} 
+\index{Log@{Log}!info@{info}}
+\index{info@{info}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{info()}{info()}}
+{\footnotesize\ttfamily void Log\+::info (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs an info message. 
+
+varargs are the same as in printf. \mbox{\Hypertarget{class_log_a4b4380a986ebf18e448221d78a236bc3}\label{class_log_a4b4380a986ebf18e448221d78a236bc3}} 
+\index{Log@{Log}!info\_no\_header@{info\_no\_header}}
+\index{info\_no\_header@{info\_no\_header}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{info\_no\_header()}{info\_no\_header()}}
+{\footnotesize\ttfamily void Log\+::info\+\_\+no\+\_\+header (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs an info message. 
+
+Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. \mbox{\Hypertarget{class_log_afc35697517d849ab8cf4a774d2b32ba8}\label{class_log_afc35697517d849ab8cf4a774d2b32ba8}} 
+\index{Log@{Log}!initialize@{initialize}}
+\index{initialize@{initialize}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{initialize()}{initialize()}}
+{\footnotesize\ttfamily void Log\+::initialize (\begin{DoxyParamCaption}\item[{const \textbf{ vector}$<$ \textbf{ string} $>$ \&}]{arguments }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Initializes the \mbox{\hyperlink{class_log}{Log}} given arguments retreived from the Command\+Line class. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em arguments} & the command line arguments \mbox{\hyperlink{class_log_a1e95d22090ba14b096609c67487f9761}{Log\+::register\+\_\+command\+\_\+line\+\_\+arguments()}} must be called before \mbox{\hyperlink{class_log_afc35697517d849ab8cf4a774d2b32ba8}{Log\+::initialize()}} \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_log_a92a5eb55bc8e480aa984d6d592f07d69}\label{class_log_a92a5eb55bc8e480aa984d6d592f07d69}} 
+\index{Log@{Log}!parse\_level\_from\_string@{parse\_level\_from\_string}}
+\index{parse\_level\_from\_string@{parse\_level\_from\_string}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{parse\_level\_from\_string()}{parse\_level\_from\_string()}}
+{\footnotesize\ttfamily \textbf{ int8\+\_\+t} Log\+::parse\+\_\+level\+\_\+from\+\_\+string (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{level }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+\begin{DoxyParams}{Parameters}
+{\em a} & string representation of the message level, either as text (e.\+g., \char`\"{}\+I\+N\+F\+O\char`\"{}) or as a number (e.\+g., 4)\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+the message level as an int8\+\_\+t (i.\+e., one of the message level constants) 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_log_a1e95d22090ba14b096609c67487f9761}\label{class_log_a1e95d22090ba14b096609c67487f9761}} 
+\index{Log@{Log}!register\_command\_line\_arguments@{register\_command\_line\_arguments}}
+\index{register\_command\_line\_arguments@{register\_command\_line\_arguments}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{register\_command\_line\_arguments()}{register\_command\_line\_arguments()}}
+{\footnotesize\ttfamily void Log\+::register\+\_\+command\+\_\+line\+\_\+arguments (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Registers used command line arguments and instructions with the Command\+Line class. 
+
+Needs to be called at the beginning of the main method of any programming using the \mbox{\hyperlink{class_log}{Log}} class. Will register the following command line arguments and instructions\+:
+\begin{DoxyEnumerate}
+\item log\+\_\+level \+: specifies the max message level of messages to be printed
+\item log\+\_\+directory \+: specifies the output directory for message logs 
+\end{DoxyEnumerate}\mbox{\Hypertarget{class_log_aecae136e87aadf153c98f4f1f92ac44f}\label{class_log_aecae136e87aadf153c98f4f1f92ac44f}} 
+\index{Log@{Log}!release\_id@{release\_id}}
+\index{release\_id@{release\_id}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{release\_id()}{release\_id()}}
+{\footnotesize\ttfamily void Log\+::release\+\_\+id (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{human\+\_\+readable\+\_\+id }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Releases a the human readable thread id previously set by by the provided human readable id;. 
+
+This will report an error and exit if this human readable id has not already been set, or if it has been relased by another thread.
+
+
+\begin{DoxyParams}{Parameters}
+{\em human\+\_\+readable\+\_\+id} & is a human readable thread id which has previously been set with \mbox{\hyperlink{class_log_ac02fea24138d69a35521d82ee64bb90d}{Log\+::set\+\_\+id(string)}} \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_log_a4718a27c58db20d66ac3c511931d475b}\label{class_log_a4718a27c58db20d66ac3c511931d475b}} 
+\index{Log@{Log}!restrict\_to\_rank@{restrict\_to\_rank}}
+\index{restrict\_to\_rank@{restrict\_to\_rank}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{restrict\_to\_rank()}{restrict\_to\_rank()}}
+{\footnotesize\ttfamily void Log\+::restrict\+\_\+to\+\_\+rank (\begin{DoxyParamCaption}\item[{\textbf{ int32\+\_\+t}}]{\+\_\+restricted\+\_\+rank }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Specifies which M\+PI process to allow messages from. 
+
+A value $<$ 0 will allow messages from any rank. 
+\begin{DoxyParams}{Parameters}
+{\em \+\_\+restricted\+\_\+rank} & is the M\+PI rank to only print messages from \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_log_ac02fea24138d69a35521d82ee64bb90d}\label{class_log_ac02fea24138d69a35521d82ee64bb90d}} 
+\index{Log@{Log}!set\_id@{set\_id}}
+\index{set\_id@{set\_id}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{set\_id()}{set\_id()}}
+{\footnotesize\ttfamily void Log\+::set\+\_\+id (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{human\+\_\+readable\+\_\+id }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Sets a human readable thread id for this thread. 
+
+This will use \textbf{ std\+::this\+\_\+thread\+::get\+\_\+id()} to get c++\textquotesingle{}s automatically generated thread id, and then put it in the Log\+::thread\+\_\+ids map, so it can be used to write cleaner logs.
+
+This will report an error and exit if another thread has already reserved this human readable id.
+
+
+\begin{DoxyParams}{Parameters}
+{\em human\+\_\+readable\+\_\+id} & a human readable thread id \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_log_a6183417026fe34b0d1494f1504b52b8f}\label{class_log_a6183417026fe34b0d1494f1504b52b8f}} 
+\index{Log@{Log}!set\_rank@{set\_rank}}
+\index{set\_rank@{set\_rank}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{set\_rank()}{set\_rank()}}
+{\footnotesize\ttfamily void Log\+::set\+\_\+rank (\begin{DoxyParamCaption}\item[{\textbf{ int32\+\_\+t}}]{\+\_\+process\+\_\+rank }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Sets the M\+PI process rank for this \mbox{\hyperlink{class_log}{Log}}. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em \+\_\+process\+\_\+rank} & is the M\+PI rank of this process \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_log_ad0d504bc7f5957a814e9de5ea08f982a}\label{class_log_ad0d504bc7f5957a814e9de5ea08f982a}} 
+\index{Log@{Log}!trace@{trace}}
+\index{trace@{trace}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{trace()}{trace()}}
+{\footnotesize\ttfamily void Log\+::trace (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs a trace message. 
+
+varargs are the same as in printf. \mbox{\Hypertarget{class_log_a5eca5217a6fc23a54cff35ff12ad04f6}\label{class_log_a5eca5217a6fc23a54cff35ff12ad04f6}} 
+\index{Log@{Log}!trace\_no\_header@{trace\_no\_header}}
+\index{trace\_no\_header@{trace\_no\_header}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{trace\_no\_header()}{trace\_no\_header()}}
+{\footnotesize\ttfamily void Log\+::trace\+\_\+no\+\_\+header (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs a trace message. 
+
+Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. \mbox{\Hypertarget{class_log_a477d1ab8cce3a2ef12cb8006fa3c6bf5}\label{class_log_a477d1ab8cce3a2ef12cb8006fa3c6bf5}} 
+\index{Log@{Log}!warning@{warning}}
+\index{warning@{warning}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{warning()}{warning()}}
+{\footnotesize\ttfamily void Log\+::warning (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs a warning message. 
+
+varargs are the same as in printf. \mbox{\Hypertarget{class_log_a9bbfa4b8f4fb2262d914f00ba04dd6c6}\label{class_log_a9bbfa4b8f4fb2262d914f00ba04dd6c6}} 
+\index{Log@{Log}!warning\_no\_header@{warning\_no\_header}}
+\index{warning\_no\_header@{warning\_no\_header}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{warning\_no\_header()}{warning\_no\_header()}}
+{\footnotesize\ttfamily void Log\+::warning\+\_\+no\+\_\+header (\begin{DoxyParamCaption}\item[{const char $\ast$}]{format,  }\item[{}]{... }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}}
+
+
+
+Logs a warning message. 
+
+Does not print the message header (useful if doing multiple log prints to the same line). varargs are the same as in printf. \mbox{\Hypertarget{class_log_aff6a4531e693fd53ad051c7fef28c6aa}\label{class_log_aff6a4531e693fd53ad051c7fef28c6aa}} 
+\index{Log@{Log}!write\_message@{write\_message}}
+\index{write\_message@{write\_message}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{write\_message()}{write\_message()}}
+{\footnotesize\ttfamily void Log\+::write\+\_\+message (\begin{DoxyParamCaption}\item[{bool}]{print\+\_\+header,  }\item[{\textbf{ int8\+\_\+t}}]{message\+\_\+level,  }\item[{const char $\ast$}]{message\+\_\+type,  }\item[{const char $\ast$}]{format,  }\item[{\textbf{ va\+\_\+list}}]{arguments }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [static]}, {\ttfamily [private]}}
+
+
+
+Potentially writes the message to either standard output or the log file if the message level is high enough. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em print\+\_\+header} & specifies if the header to the message should be printed out \\
+\hline
+{\em message\+\_\+level} & the level of the message to potentially be printed out \\
+\hline
+{\em message\+\_\+type} & a string representation of this message type \\
+\hline
+{\em message\+\_\+type} & the format string for this message (as in printf) \\
+\hline
+{\em arguments} & the arguments for the print statement \\
+\hline
+\end{DoxyParams}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_log_a08b261dd43ff89110e602a3a61f6ec61}\label{class_log_a08b261dd43ff89110e602a3a61f6ec61}} 
+\index{Log@{Log}!file\_message\_level@{file\_message\_level}}
+\index{file\_message\_level@{file\_message\_level}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{file\_message\_level}{file\_message\_level}}
+{\footnotesize\ttfamily int32\+\_\+t Log\+::file\+\_\+message\+\_\+level = \mbox{\hyperlink{class_log_a70efafdaaf797f644bb24a8e1c7f5643}{I\+N\+FO}}\hspace{0.3cm}{\ttfamily [static]}, {\ttfamily [private]}}
+
+
+
+Specifies which messages to log. 
+
+Messages will be written to the log file if their type is $<$= message\+\_\+level. \mbox{\Hypertarget{class_log_a814d0d060c29987d5d43d55b3d8d542c}\label{class_log_a814d0d060c29987d5d43d55b3d8d542c}} 
+\index{Log@{Log}!log\_ids@{log\_ids}}
+\index{log\_ids@{log\_ids}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{log\_ids}{log\_ids}}
+{\footnotesize\ttfamily \textbf{ map}$<$ thread\+::id, \textbf{ string} $>$ Log\+::log\+\_\+ids\hspace{0.3cm}{\ttfamily [static]}, {\ttfamily [private]}}
+
+
+
+A map of C++ thread ids (which are not human readable) to human readable integer ids. 
+
+Thread ids are specified with the \mbox{\hyperlink{class_log_ac02fea24138d69a35521d82ee64bb90d}{Log\+::set\+\_\+id(string)}} method. \mbox{\Hypertarget{class_log_aa8bf3e23cf88dc4e48aafd791fe93cd7}\label{class_log_aa8bf3e23cf88dc4e48aafd791fe93cd7}} 
+\index{Log@{Log}!log\_ids\_mutex@{log\_ids\_mutex}}
+\index{log\_ids\_mutex@{log\_ids\_mutex}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{log\_ids\_mutex}{log\_ids\_mutex}}
+{\footnotesize\ttfamily shared\+\_\+mutex Log\+::log\+\_\+ids\+\_\+mutex\hspace{0.3cm}{\ttfamily [static]}, {\ttfamily [private]}}
+
+
+
+A std\+::shared\+\_\+mutex protecting the Log\+::thread\+\_\+ids map. 
+
+The Log\+::set\+\_\+thread\+\_\+id(int32\+\_\+t) mehod needs write access so it will use the std\+::shared\+\_\+mutex\+::lock()x and std\+::shared\+\_\+mutex()\+::unlock() mechanism, while the Log\+::get\+\_\+thread\+\_\+id() only needs read access and can used the std\+::shared\+\_\+mutex\+::lock\+\_\+shared() and std\+::shared\+\_\+mutex\+::unlock\+\_\+shared() methods. \mbox{\Hypertarget{class_log_ad6bd8ce041323bb69e69aeb9edbe12ee}\label{class_log_ad6bd8ce041323bb69e69aeb9edbe12ee}} 
+\index{Log@{Log}!process\_rank@{process\_rank}}
+\index{process\_rank@{process\_rank}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{process\_rank}{process\_rank}}
+{\footnotesize\ttfamily int32\+\_\+t Log\+::process\+\_\+rank = -\/1\hspace{0.3cm}{\ttfamily [static]}, {\ttfamily [private]}}
+
+
+
+The M\+PI process rank for this \mbox{\hyperlink{class_log}{Log}} instance. 
+
+Set to -\/1 if not specified or not using M\+PI. \mbox{\Hypertarget{class_log_a47ec200a53bfc6b8b6a39bc91d5dbc86}\label{class_log_a47ec200a53bfc6b8b6a39bc91d5dbc86}} 
+\index{Log@{Log}!restricted\_rank@{restricted\_rank}}
+\index{restricted\_rank@{restricted\_rank}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{restricted\_rank}{restricted\_rank}}
+{\footnotesize\ttfamily int32\+\_\+t Log\+::restricted\+\_\+rank = -\/1\hspace{0.3cm}{\ttfamily [static]}, {\ttfamily [private]}}
+
+
+
+Defaults at -\/1, when set to a process rank ($>$= 0) the \mbox{\hyperlink{class_log}{Log}} will only print messages if its rank is the same as the restricted rank. 
+
+This is useful, for allowing initialization messages to only be printed out by a single process. \mbox{\Hypertarget{class_log_a633c6eafa442ecfb3b3322f89496e52e}\label{class_log_a633c6eafa442ecfb3b3322f89496e52e}} 
+\index{Log@{Log}!std\_message\_level@{std\_message\_level}}
+\index{std\_message\_level@{std\_message\_level}!Log@{Log}}
+\doxysubsubsection{\texorpdfstring{std\_message\_level}{std\_message\_level}}
+{\footnotesize\ttfamily int32\+\_\+t Log\+::std\+\_\+message\+\_\+level = \mbox{\hyperlink{class_log_a70efafdaaf797f644bb24a8e1c7f5643}{I\+N\+FO}}\hspace{0.3cm}{\ttfamily [static]}, {\ttfamily [private]}}
+
+
+
+Specifies which messages to log. 
+
+Messages will be written to the standard output log if their type is $<$= message\+\_\+level. 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+common/log.\+hxx\item 
+common/log.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_log_file.tex b/docs/latex/class_log_file.tex
new file mode 100644
index 00000000..916f84a4
--- /dev/null
+++ b/docs/latex/class_log_file.tex
@@ -0,0 +1,29 @@
+\hypertarget{class_log_file}{}\doxysection{Log\+File Class Reference}
+\label{class_log_file}\index{LogFile@{LogFile}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_log_file_aa12e8d10af350349c814ccf6b8db0492}\label{class_log_file_aa12e8d10af350349c814ccf6b8db0492}} 
+{\bfseries Log\+File} (\textbf{ F\+I\+LE} $\ast$file)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_log_file_a816eeda13280b7a06ced4b9695e0b126}\label{class_log_file_a816eeda13280b7a06ced4b9695e0b126}} 
+F\+I\+LE $\ast$ {\bfseries file}
+\item 
+\mbox{\Hypertarget{class_log_file_a1f6b5b1f5363cf079b7f46f7b6fa75f7}\label{class_log_file_a1f6b5b1f5363cf079b7f46f7b6fa75f7}} 
+\textbf{ mutex} {\bfseries file\+\_\+mutex}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_log_file_acd1b2a0733103b7bbeb76b467ea85446}\label{class_log_file_acd1b2a0733103b7bbeb76b467ea85446}} 
+class {\bfseries Log}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+common/log.\+hxx\item 
+common/log.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_m_g_u___node.eps b/docs/latex/class_m_g_u___node.eps
new file mode 100644
index 00000000..e5f7533f
--- /dev/null
+++ b/docs/latex/class_m_g_u___node.eps
@@ -0,0 +1,197 @@
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diff --git a/docs/latex/class_m_g_u___node.tex b/docs/latex/class_m_g_u___node.tex
new file mode 100644
index 00000000..3db09df6
--- /dev/null
+++ b/docs/latex/class_m_g_u___node.tex
@@ -0,0 +1,138 @@
+\hypertarget{class_m_g_u___node}{}\doxysection{M\+G\+U\+\_\+\+Node Class Reference}
+\label{class_m_g_u___node}\index{MGU\_Node@{MGU\_Node}}
+Inheritance diagram for M\+G\+U\+\_\+\+Node\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_m_g_u___node}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_adbfa27b40e21775d40f408f4a13cc961}\label{class_m_g_u___node_adbfa27b40e21775d40f408f4a13cc961}} 
+{\bfseries M\+G\+U\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+layer\+\_\+type, double \+\_\+depth)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_af97bed43890644f139a45e2dd38417ee}\label{class_m_g_u___node_af97bed43890644f139a45e2dd38417ee}} 
+void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_ae01aaf9fde23c982d87fe4745bf4f99e}\label{class_m_g_u___node_ae01aaf9fde23c982d87fe4745bf4f99e}} 
+void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng1\+\_\+1, double range)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a84e89c422e46633eb6e9a4141a128c05}\label{class_m_g_u___node_a84e89c422e46633eb6e9a4141a128c05}} 
+void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a21f1d0735e0f136a225eaca91ffedda1}\label{class_m_g_u___node_a21f1d0735e0f136a225eaca91ffedda1}} 
+void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a79db451930e095a48b421ce73a94351a}\label{class_m_g_u___node_a79db451930e095a48b421ce73a94351a}} 
+double {\bfseries get\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_abff88d124338c417b5353951077b781f}\label{class_m_g_u___node_abff88d124338c417b5353951077b781f}} 
+void {\bfseries print\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a7342ba8dae3a741759af7b3028a7acbd}\label{class_m_g_u___node_a7342ba8dae3a741759af7b3028a7acbd}} 
+void {\bfseries input\+\_\+fired} (int time, double incoming\+\_\+output)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a245f2d12613e4b369c3d6fba651668eb}\label{class_m_g_u___node_a245f2d12613e4b369c3d6fba651668eb}} 
+void {\bfseries try\+\_\+update\+\_\+deltas} (int time)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a57ae756cc7a540865bff3377d618d074}\label{class_m_g_u___node_a57ae756cc7a540865bff3377d618d074}} 
+void {\bfseries error\+\_\+fired} (int time, double error)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a2316a14d38af846810aac93c177570ca}\label{class_m_g_u___node_a2316a14d38af846810aac93c177570ca}} 
+void {\bfseries output\+\_\+fired} (int time, double delta)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a68f0c9f331857de597f7b8ecd6c081ec}\label{class_m_g_u___node_a68f0c9f331857de597f7b8ecd6c081ec}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_adb9cd6b69a7eb7ac15f74a7f70a4c1d9}\label{class_m_g_u___node_adb9cd6b69a7eb7ac15f74a7f70a4c1d9}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_aec03379e016362c70a848243d79f0675}\label{class_m_g_u___node_aec03379e016362c70a848243d79f0675}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a663ea070f5e5697a7ec51dd33efcb114}\label{class_m_g_u___node_a663ea070f5e5697a7ec51dd33efcb114}} 
+void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a695f79eda388f0bd81a51f28e38378ba}\label{class_m_g_u___node_a695f79eda388f0bd81a51f28e38378ba}} 
+void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_ae7e441a318345695c7857567234db2d1}\label{class_m_g_u___node_ae7e441a318345695c7857567234db2d1}} 
+void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a9b97f62ce3f3950860b687b35310b455}\label{class_m_g_u___node_a9b97f62ce3f3950860b687b35310b455}} 
+void {\bfseries reset} (int \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_ae9f6eed9009ad8206f6c4b536fbcad71}\label{class_m_g_u___node_ae9f6eed9009ad8206f6c4b536fbcad71}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_aa12c75aa79e859cf45311f01215e79da}\label{class_m_g_u___node_aa12c75aa79e859cf45311f01215e79da}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a57c309efb724c8a1c1dafc2322a0e9fb}\label{class_m_g_u___node_a57c309efb724c8a1c1dafc2322a0e9fb}} 
+double {\bfseries fw}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a75d820e377fca910165903c69ad3f1e6}\label{class_m_g_u___node_a75d820e377fca910165903c69ad3f1e6}} 
+double {\bfseries fu}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a3ce215d1f541001a88a0ede4f5d38d37}\label{class_m_g_u___node_a3ce215d1f541001a88a0ede4f5d38d37}} 
+double {\bfseries f\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a524291c13724123aa95bfae97bc1a266}\label{class_m_g_u___node_a524291c13724123aa95bfae97bc1a266}} 
+double {\bfseries hw}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a94fab7c0b111fb0f633eb03b888cd595}\label{class_m_g_u___node_a94fab7c0b111fb0f633eb03b888cd595}} 
+double {\bfseries hu}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a6641db2b11d665b8823b3c74425de019}\label{class_m_g_u___node_a6641db2b11d665b8823b3c74425de019}} 
+double {\bfseries h\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a120a37c95edc4706edaa437842ffd0f4}\label{class_m_g_u___node_a120a37c95edc4706edaa437842ffd0f4}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+fw}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_ac5959cad9ada6cdf72eaacd2e9a3de5e}\label{class_m_g_u___node_ac5959cad9ada6cdf72eaacd2e9a3de5e}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+fu}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a9c2a603ee5044bea97bc0b6472bf251a}\label{class_m_g_u___node_a9c2a603ee5044bea97bc0b6472bf251a}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+f\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a25479dc6e0bc5e94bb3563f762600948}\label{class_m_g_u___node_a25479dc6e0bc5e94bb3563f762600948}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+hw}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_afa9c2d60f79ea5e585c8ef34fb6a3bc1}\label{class_m_g_u___node_afa9c2d60f79ea5e585c8ef34fb6a3bc1}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+hu}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_ae69487b9daf3224dfbcb49ce682c438f}\label{class_m_g_u___node_ae69487b9daf3224dfbcb49ce682c438f}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+h\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a1c6877225f71712c0d63b23c44210116}\label{class_m_g_u___node_a1c6877225f71712c0d63b23c44210116}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+h\+\_\+prev}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a392b657d7eaf2f8aa279736c98944026}\label{class_m_g_u___node_a392b657d7eaf2f8aa279736c98944026}} 
+\textbf{ vector}$<$ double $>$ {\bfseries f}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_ae1da6cc00de07c2d6a15bea098b76f9d}\label{class_m_g_u___node_ae1da6cc00de07c2d6a15bea098b76f9d}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+f}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_aa11d31445bfdfccea366191e1c906db5}\label{class_m_g_u___node_aa11d31445bfdfccea366191e1c906db5}} 
+\textbf{ vector}$<$ double $>$ {\bfseries h\+\_\+tanh}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_ad0740ae0b13db6322fdf97ce7ed73f5e}\label{class_m_g_u___node_ad0740ae0b13db6322fdf97ce7ed73f5e}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+h\+\_\+tanh}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_m_g_u___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_m_g_u___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\end{DoxyCompactItemize}
+\doxysubsection*{Additional Inherited Members}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/mgu\+\_\+node.\+hxx\item 
+rnn/mgu\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_mosaic_images.eps b/docs/latex/class_mosaic_images.eps
new file mode 100644
index 00000000..00f0bd70
--- /dev/null
+++ b/docs/latex/class_mosaic_images.eps
@@ -0,0 +1,203 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 441.176471
+%%Pages: 0
+%%BeginSetup
+%%EndSetup
+%%EndComments
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+% ----- variables -----
+
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+/boxfont /Times-Roman findfont fontheight scalefont def
+
+% ----- procedures -----
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+/dotted { [1 4] 0 setdash } def
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+
+/max % result = MAX(arg1,arg2)
+{
+  /a exch def
+  /b exch def
+  a b gt {a} {b} ifelse
+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
+} def
+
+/box % draws a box with text 'arg1' at grid pos (arg2,arg3)
+{ gsave
+  2 setlinewidth
+  newpath
+  exch xspacing mul xoffset add
+  exch yspacing mul
+  moveto
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+  dup stringwidth pop neg boxwidth add 2 div
+  boxheight fontheight 2 div sub 2 div
+  rmoveto show stroke
+  grestore
+} def  
+
+/mark
+{ newpath
+  exch xspacing mul xoffset add boxwidth add
+  exch yspacing mul
+  moveto
+  0 boxheight 4 div rlineto
+  boxheight neg 4 div boxheight neg 4 div rlineto
+  closepath
+  eofill
+  stroke
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+/arrow
+{ newpath
+  moveto
+  3 -8 rlineto
+  -6 0 rlineto
+  3 8 rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/out % draws an output connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight add
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/in % draws an input connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul disty 2 div sub
+  /y exch def
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+  1 eq { x y disty 2 div add arrow } if
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+
+/hedge
+{
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight 2 div sub
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+} def
+
+/vedge
+{
+  /ye exch def
+  /ys exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add dup
+  ys yspacing mul boxheight 2 div sub
+  moveto
+  ye yspacing mul boxheight 2 div sub
+  lineto
+  stroke
+} def
+
+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
+  moveto
+  xspacing xe xs sub mul 0
+  rlineto
+  stroke
+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(MosaicImages) cw
+(MultiImagesInterface) cw
+(ImagesInterface) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (MosaicImages) 0.000000 0.000000 box
+ (MultiImagesInterface) 0.000000 1.000000 box
+ (ImagesInterface) 0.000000 2.000000 box
+
+% ----- relations -----
+
+solid
+0 0.000000 0.000000 out
+solid
+1 0.000000 1.000000 in
+solid
+0 0.000000 1.000000 out
+solid
+1 0.000000 2.000000 in
diff --git a/docs/latex/class_mosaic_images.tex b/docs/latex/class_mosaic_images.tex
new file mode 100644
index 00000000..cd3f7669
--- /dev/null
+++ b/docs/latex/class_mosaic_images.tex
@@ -0,0 +1,155 @@
+\hypertarget{class_mosaic_images}{}\doxysection{Mosaic\+Images Class Reference}
+\label{class_mosaic_images}\index{MosaicImages@{MosaicImages}}
+Inheritance diagram for Mosaic\+Images\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=3.000000cm]{class_mosaic_images}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_aac889fdea29db07b12f263cc9a825d6b}\label{class_mosaic_images_aac889fdea29db07b12f263cc9a825d6b}} 
+void {\bfseries get\+\_\+mosaic\+\_\+pixels} (\textbf{ string} filename, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ uint8\+\_\+t $>$ $>$ $>$ \&pixels, uint32\+\_\+t \&height, uint32\+\_\+t \&width)
+\item 
+\mbox{\Hypertarget{class_mosaic_images_adc8995b0e2b7e50c5fb9e4bcff1fa1c0}\label{class_mosaic_images_adc8995b0e2b7e50c5fb9e4bcff1fa1c0}} 
+void {\bfseries read\+\_\+mosaic} (\textbf{ string} filename, const \textbf{ vector}$<$ \mbox{\hyperlink{class_point}{Point}} $>$ \&box\+\_\+centers, int box\+\_\+radius, const \textbf{ vector}$<$ int $>$ \&box\+\_\+classes)
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a6f523557b38a1d27c2dc0ddbe1521025}\label{class_mosaic_images_a6f523557b38a1d27c2dc0ddbe1521025}} 
+void {\bfseries read\+\_\+mosaic} (\textbf{ string} filename, const \textbf{ vector}$<$ \mbox{\hyperlink{class_line}{Line}} $>$ \&lines, int line\+\_\+height, const \textbf{ vector}$<$ int $>$ \&line\+\_\+classes)
+\item 
+\mbox{\Hypertarget{class_mosaic_images_ad0b8a3629672e88622581dba57b90128}\label{class_mosaic_images_ad0b8a3629672e88622581dba57b90128}} 
+void {\bfseries initialize\+\_\+counts} (const \textbf{ vector}$<$ \textbf{ vector}$<$ int $>$ $>$ \&classes)
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a007e0e06db88264a28c46a62b92f04c6}\label{class_mosaic_images_a007e0e06db88264a28c46a62b92f04c6}} 
+{\bfseries Mosaic\+Images} (\textbf{ vector}$<$ \textbf{ string} $>$ \+\_\+filenames, const \textbf{ vector}$<$ \textbf{ vector}$<$ \mbox{\hyperlink{class_point}{Point}} $>$ $>$ \&\+\_\+box\+\_\+centers, int \+\_\+box\+\_\+radius, const \textbf{ vector}$<$ \textbf{ vector}$<$ int $>$ $>$ \&\+\_\+box\+\_\+classes, int \+\_\+padding, int \+\_\+subimage\+\_\+height, int \+\_\+subimage\+\_\+width)
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a510a0ce5a0a2c67edd7c8366edd5eaaf}\label{class_mosaic_images_a510a0ce5a0a2c67edd7c8366edd5eaaf}} 
+{\bfseries Mosaic\+Images} (\textbf{ vector}$<$ \textbf{ string} $>$ \+\_\+filenames, const \textbf{ vector}$<$ \textbf{ vector}$<$ \mbox{\hyperlink{class_point}{Point}} $>$ $>$ \&\+\_\+box\+\_\+centers, int \+\_\+box\+\_\+radius, const \textbf{ vector}$<$ \textbf{ vector}$<$ int $>$ $>$ \&\+\_\+box\+\_\+classes, int \+\_\+padding, int \+\_\+subimage\+\_\+height, int \+\_\+subimage\+\_\+width, const \textbf{ vector}$<$ float $>$ \&\+\_\+channel\+\_\+avg, const \textbf{ vector}$<$ float $>$ \&\+\_\+channel\+\_\+std\+\_\+dev)
+\item 
+\mbox{\Hypertarget{class_mosaic_images_af882240a89407c0d6bde0d61f6feeb85}\label{class_mosaic_images_af882240a89407c0d6bde0d61f6feeb85}} 
+{\bfseries Mosaic\+Images} (\textbf{ vector}$<$ \textbf{ string} $>$ \+\_\+filenames, const \textbf{ vector}$<$ \textbf{ vector}$<$ \mbox{\hyperlink{class_line}{Line}} $>$ $>$ \&\+\_\+lines, int \+\_\+line\+\_\+height, const \textbf{ vector}$<$ \textbf{ vector}$<$ int $>$ $>$ \&\+\_\+line\+\_\+classes, int \+\_\+padding, int \+\_\+subimage\+\_\+height, int \+\_\+subimage\+\_\+width)
+\item 
+\mbox{\Hypertarget{class_mosaic_images_acc91ef7b0131e03ec4a1a20f3ac0880d}\label{class_mosaic_images_acc91ef7b0131e03ec4a1a20f3ac0880d}} 
+{\bfseries Mosaic\+Images} (\textbf{ vector}$<$ \textbf{ string} $>$ \+\_\+filenames, const \textbf{ vector}$<$ \textbf{ vector}$<$ \mbox{\hyperlink{class_line}{Line}} $>$ $>$ \&\+\_\+lines, int \+\_\+line\+\_\+height, const \textbf{ vector}$<$ \textbf{ vector}$<$ int $>$ $>$ \&\+\_\+line\+\_\+classes, int \+\_\+padding, int \+\_\+subimage\+\_\+height, int \+\_\+subimage\+\_\+width, const \textbf{ vector}$<$ float $>$ \&\+\_\+channel\+\_\+avg, const \textbf{ vector}$<$ float $>$ \&\+\_\+channel\+\_\+std\+\_\+dev)
+\item 
+\mbox{\Hypertarget{class_mosaic_images_ad325fceab4348f86cd8be5b38e937b64}\label{class_mosaic_images_ad325fceab4348f86cd8be5b38e937b64}} 
+\textbf{ string} {\bfseries get\+\_\+filename} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a1de525feb692019108e19c1e6d1db3df}\label{class_mosaic_images_a1de525feb692019108e19c1e6d1db3df}} 
+int {\bfseries get\+\_\+class\+\_\+size} (int i) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_abe86913cd32ce1c6180fe407cec91c0c}\label{class_mosaic_images_abe86913cd32ce1c6180fe407cec91c0c}} 
+int {\bfseries get\+\_\+number\+\_\+classes} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a8af1006d26fd60bf2ae38b4a823be4e3}\label{class_mosaic_images_a8af1006d26fd60bf2ae38b4a823be4e3}} 
+int {\bfseries get\+\_\+number\+\_\+images} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a37fe41bb67e68a3807f41e3058b25046}\label{class_mosaic_images_a37fe41bb67e68a3807f41e3058b25046}} 
+int {\bfseries get\+\_\+number\+\_\+large\+\_\+images} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_aec5dfeb2f1962ac5050b0e632fba6389}\label{class_mosaic_images_aec5dfeb2f1962ac5050b0e632fba6389}} 
+int {\bfseries get\+\_\+number\+\_\+subimages} (int i) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_aab4cddd13b516d914939895447a62020}\label{class_mosaic_images_aab4cddd13b516d914939895447a62020}} 
+int {\bfseries get\+\_\+padding} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_abccc75a668b25f1049d8320dd8ace724}\label{class_mosaic_images_abccc75a668b25f1049d8320dd8ace724}} 
+int {\bfseries get\+\_\+image\+\_\+channels} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a5cdccfed470bc8afc913694749a74e17}\label{class_mosaic_images_a5cdccfed470bc8afc913694749a74e17}} 
+int {\bfseries get\+\_\+image\+\_\+width} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_acf2376a5ceeeaa7bfb20ed982b0fd092}\label{class_mosaic_images_acf2376a5ceeeaa7bfb20ed982b0fd092}} 
+int {\bfseries get\+\_\+image\+\_\+height} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_ac65a01146d8b06d51466d8e90abd5d8f}\label{class_mosaic_images_ac65a01146d8b06d51466d8e90abd5d8f}} 
+int {\bfseries get\+\_\+large\+\_\+image\+\_\+channels} (int image) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_ac006d53107ac14108f51d5098b8fb4a1}\label{class_mosaic_images_ac006d53107ac14108f51d5098b8fb4a1}} 
+int {\bfseries get\+\_\+large\+\_\+image\+\_\+width} (int image) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a6bf73d95f96cf4fd2285f758381e40f2}\label{class_mosaic_images_a6bf73d95f96cf4fd2285f758381e40f2}} 
+int {\bfseries get\+\_\+large\+\_\+image\+\_\+height} (int image) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a4cf8078f212d403536c419d0e96c764f}\label{class_mosaic_images_a4cf8078f212d403536c419d0e96c764f}} 
+int {\bfseries get\+\_\+image\+\_\+classification} (int image) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_afeefc659cd491256bbc2e15f68eec4d2}\label{class_mosaic_images_afeefc659cd491256bbc2e15f68eec4d2}} 
+int {\bfseries get\+\_\+classification} (int subimage) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a92fe7f2591f600788c4059760291ef06}\label{class_mosaic_images_a92fe7f2591f600788c4059760291ef06}} 
+float {\bfseries get\+\_\+pixel} (int subimage, int z, int y, int x) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_ac5276c1194c374a9f70f2b87cbeca2e3}\label{class_mosaic_images_ac5276c1194c374a9f70f2b87cbeca2e3}} 
+float {\bfseries get\+\_\+raw\+\_\+pixel} (int subimage, int z, int y, int x) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a20866c4ca79cddad3f077b49ed4be769}\label{class_mosaic_images_a20866c4ca79cddad3f077b49ed4be769}} 
+void {\bfseries calculate\+\_\+avg\+\_\+std\+\_\+dev} ()
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a02c1a6124ef802c69eee55b48423b196}\label{class_mosaic_images_a02c1a6124ef802c69eee55b48423b196}} 
+float {\bfseries get\+\_\+channel\+\_\+avg} (int channel) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_afb638a6ac9a51208ba1bdfa0b935c723}\label{class_mosaic_images_afb638a6ac9a51208ba1bdfa0b935c723}} 
+float {\bfseries get\+\_\+channel\+\_\+std\+\_\+dev} (int channel) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_ac46141d659f627ee6e12b6a685edb45c}\label{class_mosaic_images_ac46141d659f627ee6e12b6a685edb45c}} 
+const \textbf{ vector}$<$ float $>$ \& {\bfseries get\+\_\+average} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a1114957ecf2c38040141bd285b9e9e18}\label{class_mosaic_images_a1114957ecf2c38040141bd285b9e9e18}} 
+const \textbf{ vector}$<$ float $>$ \& {\bfseries get\+\_\+std\+\_\+dev} () const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a04f7e20bb3beb0d21a8d65c51502f858}\label{class_mosaic_images_a04f7e20bb3beb0d21a8d65c51502f858}} 
+void {\bfseries normalize} ()
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a0d5ff3a4cb10356d89b695ab1999abde}\label{class_mosaic_images_a0d5ff3a4cb10356d89b695ab1999abde}} 
+\mbox{\hyperlink{class_large_image}{Large\+Image}} $\ast$ {\bfseries copy\+\_\+image} (int i) const
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a546fc5bb15eec99eeb740a8874f91f51}\label{class_mosaic_images_a546fc5bb15eec99eeb740a8874f91f51}} 
+void {\bfseries set\+\_\+alpha} (int i, const \textbf{ vector}$<$ \textbf{ vector}$<$ float $>$ $>$ \&\+\_\+alpha)
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a8c27e81fdf358f3715e012a35241e731}\label{class_mosaic_images_a8c27e81fdf358f3715e012a35241e731}} 
+void {\bfseries set\+\_\+alpha} (int i, const \textbf{ vector}$<$ \textbf{ vector}$<$ uint8\+\_\+t $>$ $>$ \&\+\_\+alpha)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a42e432357c571bb533bccd097c392c6c}\label{class_mosaic_images_a42e432357c571bb533bccd097c392c6c}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries filenames}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_ae8179fe59198f2d18d51c3b351c67b82}\label{class_mosaic_images_ae8179fe59198f2d18d51c3b351c67b82}} 
+int {\bfseries number\+\_\+classes}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_af592a7b3101ce41d452a839226ddcc2f}\label{class_mosaic_images_af592a7b3101ce41d452a839226ddcc2f}} 
+int {\bfseries number\+\_\+images}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a59e127dbdda91e7471b2db6bdcae3d22}\label{class_mosaic_images_a59e127dbdda91e7471b2db6bdcae3d22}} 
+\textbf{ vector}$<$ int $>$ {\bfseries class\+\_\+sizes}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a2e6260212e557a17be7c6f3032e5ca97}\label{class_mosaic_images_a2e6260212e557a17be7c6f3032e5ca97}} 
+int {\bfseries padding}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a62edb4acb537c33da7d41d17e7057b6b}\label{class_mosaic_images_a62edb4acb537c33da7d41d17e7057b6b}} 
+int {\bfseries channels}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a15a3ff69b78833031233d2aa12242984}\label{class_mosaic_images_a15a3ff69b78833031233d2aa12242984}} 
+int {\bfseries subimage\+\_\+width}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a6012320a1b04d0e567db136a1366c886}\label{class_mosaic_images_a6012320a1b04d0e567db136a1366c886}} 
+int {\bfseries subimage\+\_\+height}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a039ae8bf2073e0582416497c6c76b2fd}\label{class_mosaic_images_a039ae8bf2073e0582416497c6c76b2fd}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_large_image}{Large\+Image}} $>$ {\bfseries images}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_ae4292e50a95fa6c690978b3ebd8bb2e7}\label{class_mosaic_images_ae4292e50a95fa6c690978b3ebd8bb2e7}} 
+\textbf{ vector}$<$ float $>$ {\bfseries channel\+\_\+avg}
+\item 
+\mbox{\Hypertarget{class_mosaic_images_a2aac949f567bbf8c2805c4131b76dfe4}\label{class_mosaic_images_a2aac949f567bbf8c2805c4131b76dfe4}} 
+\textbf{ vector}$<$ float $>$ {\bfseries channel\+\_\+std\+\_\+dev}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/mosaic\+\_\+image\+\_\+set.\+hxx\item 
+image\+\_\+tools/mosaic\+\_\+image\+\_\+set.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_multi_images_interface.eps b/docs/latex/class_multi_images_interface.eps
new file mode 100644
index 00000000..de78507b
--- /dev/null
+++ b/docs/latex/class_multi_images_interface.eps
@@ -0,0 +1,209 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 220.588235
+%%Pages: 0
+%%BeginSetup
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+%%EndComments
+
+% ----- variables -----
+
+/boxwidth 0 def
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+% ----- procedures -----
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+{
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+
+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
+  moveto
+  xspacing xe xs sub mul 0
+  rlineto
+  stroke
+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(MultiImagesInterface) cw
+(ImagesInterface) cw
+(LargeImages) cw
+(MosaicImages) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (MultiImagesInterface) 0.500000 1.000000 box
+ (ImagesInterface) 0.500000 2.000000 box
+ (LargeImages) 0.000000 0.000000 box
+ (MosaicImages) 1.000000 0.000000 box
+
+% ----- relations -----
+
+solid
+0 0.500000 1.000000 out
+solid
+1 0.500000 2.000000 in
+solid
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+solid
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+solid
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+solid
+0 1.000000 0.750000 in
diff --git a/docs/latex/class_multi_images_interface.tex b/docs/latex/class_multi_images_interface.tex
new file mode 100644
index 00000000..6d0bac3e
--- /dev/null
+++ b/docs/latex/class_multi_images_interface.tex
@@ -0,0 +1,43 @@
+\hypertarget{class_multi_images_interface}{}\doxysection{Multi\+Images\+Interface Class Reference}
+\label{class_multi_images_interface}\index{MultiImagesInterface@{MultiImagesInterface}}
+Inheritance diagram for Multi\+Images\+Interface\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=3.000000cm]{class_multi_images_interface}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_multi_images_interface_af4d508b4438c0d2489676c4efdc14ad3}\label{class_multi_images_interface_af4d508b4438c0d2489676c4efdc14ad3}} 
+virtual int {\bfseries get\+\_\+number\+\_\+large\+\_\+images} () const =0
+\item 
+\mbox{\Hypertarget{class_multi_images_interface_a85fb694852852b193ded189061df511f}\label{class_multi_images_interface_a85fb694852852b193ded189061df511f}} 
+virtual int {\bfseries get\+\_\+number\+\_\+subimages} (int i) const =0
+\item 
+\mbox{\Hypertarget{class_multi_images_interface_a2b759ca3bb6cf2e2f74bc1c095a265e5}\label{class_multi_images_interface_a2b759ca3bb6cf2e2f74bc1c095a265e5}} 
+virtual int {\bfseries get\+\_\+padding} () const =0
+\item 
+\mbox{\Hypertarget{class_multi_images_interface_aae945c1557a1a1aaaa729cdbb3593773}\label{class_multi_images_interface_aae945c1557a1a1aaaa729cdbb3593773}} 
+virtual int {\bfseries get\+\_\+large\+\_\+image\+\_\+channels} (int image) const =0
+\item 
+\mbox{\Hypertarget{class_multi_images_interface_a35162419cfe2d837001c8cf26600e08f}\label{class_multi_images_interface_a35162419cfe2d837001c8cf26600e08f}} 
+virtual int {\bfseries get\+\_\+large\+\_\+image\+\_\+width} (int image) const =0
+\item 
+\mbox{\Hypertarget{class_multi_images_interface_a6cac6e285fc451ab65b6f6967e9f5029}\label{class_multi_images_interface_a6cac6e285fc451ab65b6f6967e9f5029}} 
+virtual int {\bfseries get\+\_\+large\+\_\+image\+\_\+height} (int image) const =0
+\item 
+\mbox{\Hypertarget{class_multi_images_interface_adf4b52ae1874c6ab3c3904cde3095bc8}\label{class_multi_images_interface_adf4b52ae1874c6ab3c3904cde3095bc8}} 
+virtual int {\bfseries get\+\_\+number\+\_\+classes} () const =0
+\item 
+\mbox{\Hypertarget{class_multi_images_interface_a3616d358bee4792ee6b22af75bddfcb6}\label{class_multi_images_interface_a3616d358bee4792ee6b22af75bddfcb6}} 
+virtual int {\bfseries get\+\_\+image\+\_\+classification} (int image) const =0
+\item 
+\mbox{\Hypertarget{class_multi_images_interface_ac7d52913a277f190a3731a3873119a65}\label{class_multi_images_interface_ac7d52913a277f190a3731a3873119a65}} 
+virtual float {\bfseries get\+\_\+raw\+\_\+pixel} (int subimage, int z, int y, int x) const =0
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/image\+\_\+set\+\_\+interface.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_neat_speciation_strategy.eps b/docs/latex/class_neat_speciation_strategy.eps
new file mode 100644
index 00000000..35558810
--- /dev/null
+++ b/docs/latex/class_neat_speciation_strategy.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
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+%%Pages: 0
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+%%EndComments
+
+% ----- variables -----
+
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+/disty 40 def
+/boundaspect 1.900000 def  % aspect ratio of the BoundingBox (width/height)
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+
+% ----- procedures -----
+
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+
+/max % result = MAX(arg1,arg2)
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+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
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+} def
+
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+} def
+
+% ----- main ------
+
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+(NeatSpeciationStrategy) cw
+(SpeciationStrategy) cw
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+
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+
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+ (SpeciationStrategy) 0.000000 1.000000 box
+
+% ----- relations -----
+
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diff --git a/docs/latex/class_neat_speciation_strategy.tex b/docs/latex/class_neat_speciation_strategy.tex
new file mode 100644
index 00000000..e07a8432
--- /dev/null
+++ b/docs/latex/class_neat_speciation_strategy.tex
@@ -0,0 +1,323 @@
+\hypertarget{class_neat_speciation_strategy}{}\doxysection{Neat\+Speciation\+Strategy Class Reference}
+\label{class_neat_speciation_strategy}\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+Inheritance diagram for Neat\+Speciation\+Strategy\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_neat_speciation_strategy}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a903c5e6d68d601d30ae70c5235895a13}\label{class_neat_speciation_strategy_a903c5e6d68d601d30ae70c5235895a13}} 
+{\bfseries Neat\+Speciation\+Strategy} (double \+\_\+mutation\+\_\+rate, double \+\_\+intra\+\_\+island\+\_\+crossover\+\_\+rate, double \+\_\+inter\+\_\+island\+\_\+crossover\+\_\+rate, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$\+\_\+seed\+\_\+genome, int32\+\_\+t \+\_\+max\+\_\+genomes, double \+\_\+species\+\_\+threshold, double \+\_\+fitness\+\_\+threshold, double \+\_\+neat\+\_\+c1, double \+\_\+neat\+\_\+c2, double \+\_\+neat\+\_\+c3, \textbf{ minstd\+\_\+rand0} \&\+\_\+generator)
+\item 
+int32\+\_\+t \mbox{\hyperlink{class_neat_speciation_strategy_af7e48fd1afb5a9c1b422ad251366263e}{get\+\_\+generated\+\_\+genomes}} () const
+\item 
+int32\+\_\+t \mbox{\hyperlink{class_neat_speciation_strategy_aba55a9f0006af882fd613bd0676555eb}{get\+\_\+inserted\+\_\+genomes}} () const
+\item 
+double \mbox{\hyperlink{class_neat_speciation_strategy_a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99}{get\+\_\+best\+\_\+fitness}} ()
+\begin{DoxyCompactList}\small\item\em Gets the fitness of the best genome of all the islands. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_neat_speciation_strategy_acbd3eaa05db725de60074276cd0bb449}{get\+\_\+worst\+\_\+fitness}} ()
+\begin{DoxyCompactList}\small\item\em Gets the fitness of the worst genome of all the islands. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_neat_speciation_strategy_aecf62aeba94c1f8d786215c10ea4774b}{get\+\_\+best\+\_\+genome}} ()
+\begin{DoxyCompactList}\small\item\em Gets the best genome of all the islands. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_neat_speciation_strategy_a8bc6ad6a0740e2f6072aef3ad14dd3f7}{get\+\_\+worst\+\_\+genome}} ()
+\begin{DoxyCompactList}\small\item\em Gets the the worst genome of all the islands. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_neat_speciation_strategy_aa2b2521a400435cbd1856aadda2051e0}{insert\+\_\+genome}} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$genome)
+\begin{DoxyCompactList}\small\item\em Inserts a {\bfseries{copy}} of the genome into this speciation strategy. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_neat_speciation_strategy_ae86f8696ddab1b6cc595b6e2ef0371ae}{generate\+\_\+genome}} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \textbf{ function}$<$ void(int32\+\_\+t, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&mutate, \textbf{ function}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&crossover)
+\begin{DoxyCompactList}\small\item\em Generates a new genome. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a0c58ebbcfbc29127d02378a46ecfcb19}\label{class_neat_speciation_strategy_a0c58ebbcfbc29127d02378a46ecfcb19}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries generate\+\_\+for\+\_\+species} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \textbf{ function}$<$ void(int32\+\_\+t, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&mutate, \textbf{ function}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&crossover)
+\item 
+void \mbox{\hyperlink{class_neat_speciation_strategy_abef17e0293c2e0a64b3b4b3b9b7775d2}{print}} (\textbf{ string} indent=\char`\"{}\char`\"{}) const
+\begin{DoxyCompactList}\small\item\em Prints out all the island\textquotesingle{}s populations. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a0117c886c0aedbb22e8f4ee6803ab669}\label{class_neat_speciation_strategy_a0117c886c0aedbb22e8f4ee6803ab669}} 
+\textbf{ string} \mbox{\hyperlink{class_neat_speciation_strategy_a0117c886c0aedbb22e8f4ee6803ab669}{get\+\_\+strategy\+\_\+information\+\_\+headers}} () const
+\begin{DoxyCompactList}\small\item\em Gets speciation strategy information headers for logs. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a3f5175b016921853c2e9461475bff164}\label{class_neat_speciation_strategy_a3f5175b016921853c2e9461475bff164}} 
+\textbf{ string} \mbox{\hyperlink{class_neat_speciation_strategy_a3f5175b016921853c2e9461475bff164}{get\+\_\+strategy\+\_\+information\+\_\+values}} () const
+\begin{DoxyCompactList}\small\item\em Gets speciation strategy information values for logs. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a2047928c8e521b5f039ab374628b6c8f}\label{class_neat_speciation_strategy_a2047928c8e521b5f039ab374628b6c8f}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries get\+\_\+global\+\_\+best\+\_\+genome} ()
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_aa4fe2ee6a14cf1dcf0174c79033f0399}\label{class_neat_speciation_strategy_aa4fe2ee6a14cf1dcf0174c79033f0399}} 
+\textbf{ vector}$<$ int32\+\_\+t $>$ {\bfseries get\+\_\+random\+\_\+species\+\_\+list} ()
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_acd0cc1b9a7b4a72dbac191d9cb384912}\label{class_neat_speciation_strategy_acd0cc1b9a7b4a72dbac191d9cb384912}} 
+double {\bfseries get\+\_\+distance} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$g1, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$g2)
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a8753b08324b5bc36b53229710ab8370b}\label{class_neat_speciation_strategy_a8753b08324b5bc36b53229710ab8370b}} 
+int {\bfseries get\+\_\+exceed\+\_\+number} (\textbf{ vector}$<$ int32\+\_\+t $>$ v1, \textbf{ vector}$<$ int32\+\_\+t $>$ v2)
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a5b617be236a503807bf3617bf4a30bf6}\label{class_neat_speciation_strategy_a5b617be236a503807bf3617bf4a30bf6}} 
+void {\bfseries rank\+\_\+species} ()
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_adc2f2a0cacd0bb4efcd2d2dda51dedce}\label{class_neat_speciation_strategy_adc2f2a0cacd0bb4efcd2d2dda51dedce}} 
+bool {\bfseries check\+\_\+population} ()
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_aff8357ced2aa6777899749f62dc22a5d}\label{class_neat_speciation_strategy_aff8357ced2aa6777899749f62dc22a5d}} 
+void {\bfseries check\+\_\+species} ()
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a8c33c9c76990e80839167c2791773bfd}\label{class_neat_speciation_strategy_a8c33c9c76990e80839167c2791773bfd}} 
+int32\+\_\+t \mbox{\hyperlink{class_neat_speciation_strategy_a8c33c9c76990e80839167c2791773bfd}{generation\+\_\+species}}
+\begin{DoxyCompactList}\small\item\em Used to track which island to generate the next genome from. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a65363f273bd436b14d5b31e01bfd4778}\label{class_neat_speciation_strategy_a65363f273bd436b14d5b31e01bfd4778}} 
+int32\+\_\+t {\bfseries species\+\_\+count}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_aa9cf3794cccbfabb1d4e32897bf3a965}\label{class_neat_speciation_strategy_aa9cf3794cccbfabb1d4e32897bf3a965}} 
+int32\+\_\+t \mbox{\hyperlink{class_neat_speciation_strategy_aa9cf3794cccbfabb1d4e32897bf3a965}{population\+\_\+not\+\_\+improving\+\_\+count}}
+\begin{DoxyCompactList}\small\item\em $<$ Used to keep track of the number of species generated . \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a63e36d8b6a91d1f2ce76dd84606f5865}\label{class_neat_speciation_strategy_a63e36d8b6a91d1f2ce76dd84606f5865}} 
+double {\bfseries species\+\_\+threshold}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a24ce4ebee07701d240dbcc6a4e9561d2}\label{class_neat_speciation_strategy_a24ce4ebee07701d240dbcc6a4e9561d2}} 
+double {\bfseries fitness\+\_\+threshold}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a0eb7a7bb185e655c8cdd928321aaeee1}\label{class_neat_speciation_strategy_a0eb7a7bb185e655c8cdd928321aaeee1}} 
+double {\bfseries neat\+\_\+c1}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a0554532c31c545b4c8d5d6a073699145}\label{class_neat_speciation_strategy_a0554532c31c545b4c8d5d6a073699145}} 
+double {\bfseries neat\+\_\+c2}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a2bf558da2a6715ee6d8ae1e17ee7c6aa}\label{class_neat_speciation_strategy_a2bf558da2a6715ee6d8ae1e17ee7c6aa}} 
+double {\bfseries neat\+\_\+c3}
+\item 
+double \mbox{\hyperlink{class_neat_speciation_strategy_aacd4a3966b8d8578b3cc1f67c03485b2}{mutation\+\_\+rate}}
+\begin{DoxyCompactList}\small\item\em How frequently to do mutations. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_neat_speciation_strategy_ae212edf21f96938c934ad7f824f5d4d7}{intra\+\_\+island\+\_\+crossover\+\_\+rate}}
+\begin{DoxyCompactList}\small\item\em How frequently to do intra-\/island crossovers. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_neat_speciation_strategy_ae407ee52a926c60746041987e60f1ecd}{inter\+\_\+island\+\_\+crossover\+\_\+rate}}
+\begin{DoxyCompactList}\small\item\em How frequently to do inter-\/island crossovers. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_aa2ecd78ba30f3cc72d2bf1367d5899bc}\label{class_neat_speciation_strategy_aa2ecd78ba30f3cc72d2bf1367d5899bc}} 
+int32\+\_\+t \mbox{\hyperlink{class_neat_speciation_strategy_aa2ecd78ba30f3cc72d2bf1367d5899bc}{generated\+\_\+genomes}}
+\begin{DoxyCompactList}\small\item\em How many genomes have been generated by this speciation strategy. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a863ed8485d76c0a036f7a533148888e8}\label{class_neat_speciation_strategy_a863ed8485d76c0a036f7a533148888e8}} 
+int32\+\_\+t \mbox{\hyperlink{class_neat_speciation_strategy_a863ed8485d76c0a036f7a533148888e8}{inserted\+\_\+genomes}}
+\begin{DoxyCompactList}\small\item\em How many genomes have been inserted into this speciatoin strategy. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_ab991acafcd0032a3b7b54feae384414d}\label{class_neat_speciation_strategy_ab991acafcd0032a3b7b54feae384414d}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_neat_speciation_strategy_ab991acafcd0032a3b7b54feae384414d}{minimal\+\_\+genome}}
+\begin{DoxyCompactList}\small\item\em keep a reference to a minimal genome so we can re-\/use it across islands and not duplicate innovation numbers. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_ab49abdc7dbe12df0c445d84258fa3cd5}\label{class_neat_speciation_strategy_ab49abdc7dbe12df0c445d84258fa3cd5}} 
+int32\+\_\+t {\bfseries max\+\_\+genomes}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_afdfc19b3f2f3f7f59baf7f86844af1f3}\label{class_neat_speciation_strategy_afdfc19b3f2f3f7f59baf7f86844af1f3}} 
+\textbf{ minstd\+\_\+rand0} {\bfseries generator}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_a3b5fce274787384916bc8d6c564fde3c}\label{class_neat_speciation_strategy_a3b5fce274787384916bc8d6c564fde3c}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_species}{Species}} $\ast$ $>$ {\bfseries Neat\+\_\+\+Species}
+\item 
+\mbox{\Hypertarget{class_neat_speciation_strategy_ab6026e12cef3b892c672d3ab3297d392}\label{class_neat_speciation_strategy_ab6026e12cef3b892c672d3ab3297d392}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries global\+\_\+best\+\_\+genome}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_neat_speciation_strategy_ae86f8696ddab1b6cc595b6e2ef0371ae}\label{class_neat_speciation_strategy_ae86f8696ddab1b6cc595b6e2ef0371ae}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!generate\_genome@{generate\_genome}}
+\index{generate\_genome@{generate\_genome}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{generate\_genome()}{generate\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Neat\+Speciation\+Strategy\+::generate\+\_\+genome (\begin{DoxyParamCaption}\item[{\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&}]{rng\+\_\+0\+\_\+1,  }\item[{\textbf{ minstd\+\_\+rand0} \&}]{generator,  }\item[{\textbf{ function}$<$ void(int32\+\_\+t, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&}]{mutate,  }\item[{\textbf{ function}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&}]{crossover }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Generates a new genome. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em rng\+\_\+0\+\_\+1} & is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). \\
+\hline
+{\em generator} & is the random number generator \\
+\hline
+{\em mutate} & is the a function which performs a mutation on a genome \\
+\hline
+{\em crossover} & is the function which performs crossover between two genomes\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+the newly generated genome. 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a76f36f0dd7c47727aef912d48f0fa26b}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_neat_speciation_strategy_a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99}\label{class_neat_speciation_strategy_a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!get\_best\_fitness@{get\_best\_fitness}}
+\index{get\_best\_fitness@{get\_best\_fitness}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_best\_fitness()}{get\_best\_fitness()}}
+{\footnotesize\ttfamily double Neat\+Speciation\+Strategy\+::get\+\_\+best\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Gets the fitness of the best genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the best fitness over all islands 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_afa3f2d35da2172a32ed06588ef09d4d0}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_neat_speciation_strategy_aecf62aeba94c1f8d786215c10ea4774b}\label{class_neat_speciation_strategy_aecf62aeba94c1f8d786215c10ea4774b}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!get\_best\_genome@{get\_best\_genome}}
+\index{get\_best\_genome@{get\_best\_genome}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_best\_genome()}{get\_best\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Neat\+Speciation\+Strategy\+::get\+\_\+best\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Gets the best genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the best genome of all islands 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_ad0796098d09c25bfee14d9f264bcba2d}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_neat_speciation_strategy_af7e48fd1afb5a9c1b422ad251366263e}\label{class_neat_speciation_strategy_af7e48fd1afb5a9c1b422ad251366263e}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!get\_generated\_genomes@{get\_generated\_genomes}}
+\index{get\_generated\_genomes@{get\_generated\_genomes}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_generated\_genomes()}{get\_generated\_genomes()}}
+{\footnotesize\ttfamily int32\+\_\+t Neat\+Speciation\+Strategy\+::get\+\_\+generated\+\_\+genomes (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [virtual]}}
+
+\begin{DoxyReturn}{Returns}
+the number of generated genomes. 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a7699a7050ed5a66693f19e834e9ba082}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_neat_speciation_strategy_aba55a9f0006af882fd613bd0676555eb}\label{class_neat_speciation_strategy_aba55a9f0006af882fd613bd0676555eb}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!get\_inserted\_genomes@{get\_inserted\_genomes}}
+\index{get\_inserted\_genomes@{get\_inserted\_genomes}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_inserted\_genomes()}{get\_inserted\_genomes()}}
+{\footnotesize\ttfamily int32\+\_\+t Neat\+Speciation\+Strategy\+::get\+\_\+inserted\+\_\+genomes (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [virtual]}}
+
+\begin{DoxyReturn}{Returns}
+the number of inserted genomes. 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a1f07309130568d8cc79da44c8da6ca69}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_neat_speciation_strategy_acbd3eaa05db725de60074276cd0bb449}\label{class_neat_speciation_strategy_acbd3eaa05db725de60074276cd0bb449}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!get\_worst\_fitness@{get\_worst\_fitness}}
+\index{get\_worst\_fitness@{get\_worst\_fitness}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_fitness()}{get\_worst\_fitness()}}
+{\footnotesize\ttfamily double Neat\+Speciation\+Strategy\+::get\+\_\+worst\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Gets the fitness of the worst genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the worst fitness over all islands 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a6bdef578fe33c628a81db35d75eaa473}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_neat_speciation_strategy_a8bc6ad6a0740e2f6072aef3ad14dd3f7}\label{class_neat_speciation_strategy_a8bc6ad6a0740e2f6072aef3ad14dd3f7}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!get\_worst\_genome@{get\_worst\_genome}}
+\index{get\_worst\_genome@{get\_worst\_genome}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_genome()}{get\_worst\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Neat\+Speciation\+Strategy\+::get\+\_\+worst\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Gets the the worst genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the worst genome of all islands 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_ae84e9c1e0eaf02886b41b1d9adf488f4}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_neat_speciation_strategy_aa2b2521a400435cbd1856aadda2051e0}\label{class_neat_speciation_strategy_aa2b2521a400435cbd1856aadda2051e0}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!insert\_genome@{insert\_genome}}
+\index{insert\_genome@{insert\_genome}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{insert\_genome()}{insert\_genome()}}
+{\footnotesize\ttfamily int32\+\_\+t Neat\+Speciation\+Strategy\+::insert\+\_\+genome (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$}]{genome }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Inserts a {\bfseries{copy}} of the genome into this speciation strategy. 
+
+The caller of this method will need to free the memory of the genome passed into this method.
+
+
+\begin{DoxyParams}{Parameters}
+{\em genome} & is the genome to insert. \\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+a value $<$ 0 if the genome was not inserted, 0 if it was a new best genome or $>$ 0 otherwise. 
+\end{DoxyReturn}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a1fd87178f38052aa934312e49819e509}{Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_neat_speciation_strategy_abef17e0293c2e0a64b3b4b3b9b7775d2}\label{class_neat_speciation_strategy_abef17e0293c2e0a64b3b4b3b9b7775d2}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!print@{print}}
+\index{print@{print}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{print()}{print()}}
+{\footnotesize\ttfamily void Neat\+Speciation\+Strategy\+::print (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{indent = {\ttfamily \char`\"{}\char`\"{}} }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [virtual]}}
+
+
+
+Prints out all the island\textquotesingle{}s populations. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em indent} & is how much to indent what is printed out \\
+\hline
+\end{DoxyParams}
+
+
+Implements \mbox{\hyperlink{class_speciation_strategy_a1d44f4c87ab00182e61f0fb364f274a9}{Speciation\+Strategy}}.
+
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_neat_speciation_strategy_ae407ee52a926c60746041987e60f1ecd}\label{class_neat_speciation_strategy_ae407ee52a926c60746041987e60f1ecd}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!inter\_island\_crossover\_rate@{inter\_island\_crossover\_rate}}
+\index{inter\_island\_crossover\_rate@{inter\_island\_crossover\_rate}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{inter\_island\_crossover\_rate}{inter\_island\_crossover\_rate}}
+{\footnotesize\ttfamily double Neat\+Speciation\+Strategy\+::inter\+\_\+island\+\_\+crossover\+\_\+rate\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+How frequently to do inter-\/island crossovers. 
+
+Note that mutation\+\_\+rate + intra\+\_\+island\+\_\+crossover\+\_\+rate + inter\+\_\+island\+\_\+crossover\+\_\+rate should equal 1, if not they will be scaled down such that they do. \mbox{\Hypertarget{class_neat_speciation_strategy_ae212edf21f96938c934ad7f824f5d4d7}\label{class_neat_speciation_strategy_ae212edf21f96938c934ad7f824f5d4d7}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!intra\_island\_crossover\_rate@{intra\_island\_crossover\_rate}}
+\index{intra\_island\_crossover\_rate@{intra\_island\_crossover\_rate}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{intra\_island\_crossover\_rate}{intra\_island\_crossover\_rate}}
+{\footnotesize\ttfamily double Neat\+Speciation\+Strategy\+::intra\+\_\+island\+\_\+crossover\+\_\+rate\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+How frequently to do intra-\/island crossovers. 
+
+Note that mutation\+\_\+rate + intra\+\_\+island\+\_\+crossover\+\_\+rate + inter\+\_\+island\+\_\+crossover\+\_\+rate should equal 1, if not they will be scaled down such that they do. \mbox{\Hypertarget{class_neat_speciation_strategy_aacd4a3966b8d8578b3cc1f67c03485b2}\label{class_neat_speciation_strategy_aacd4a3966b8d8578b3cc1f67c03485b2}} 
+\index{NeatSpeciationStrategy@{NeatSpeciationStrategy}!mutation\_rate@{mutation\_rate}}
+\index{mutation\_rate@{mutation\_rate}!NeatSpeciationStrategy@{NeatSpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{mutation\_rate}{mutation\_rate}}
+{\footnotesize\ttfamily double Neat\+Speciation\+Strategy\+::mutation\+\_\+rate\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+How frequently to do mutations. 
+
+Note that mutation\+\_\+rate + intra\+\_\+island\+\_\+crossover\+\_\+rate + inter\+\_\+island\+\_\+crossover\+\_\+rate should equal 1, if not they will be scaled down such that they do. 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/neat\+\_\+speciation\+\_\+strategy.\+hxx\item 
+rnn/neat\+\_\+speciation\+\_\+strategy.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_normal_distribution.tex b/docs/latex/class_normal_distribution.tex
new file mode 100644
index 00000000..cc607e11
--- /dev/null
+++ b/docs/latex/class_normal_distribution.tex
@@ -0,0 +1,41 @@
+\hypertarget{class_normal_distribution}{}\doxysection{Normal\+Distribution Class Reference}
+\label{class_normal_distribution}\index{NormalDistribution@{NormalDistribution}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_normal_distribution_ab2dab37dbdf9a427dabb479f95db595d}\label{class_normal_distribution_ab2dab37dbdf9a427dabb479f95db595d}} 
+float {\bfseries random} (\textbf{ minstd\+\_\+rand0} \&generator, float mu, float sigma)
+\item 
+\mbox{\Hypertarget{class_normal_distribution_a6887413d2b61c9b50cacc957dffb9858}\label{class_normal_distribution_a6887413d2b61c9b50cacc957dffb9858}} 
+bool {\bfseries operator==} (const \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&other) const
+\item 
+\mbox{\Hypertarget{class_normal_distribution_af0e334ba55eedd5b5ca33230245768f7}\label{class_normal_distribution_af0e334ba55eedd5b5ca33230245768f7}} 
+bool {\bfseries operator!=} (const \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&other) const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_normal_distribution_acb87f6e2f9181d9884ea7b6f4af6aecc}\label{class_normal_distribution_acb87f6e2f9181d9884ea7b6f4af6aecc}} 
+bool {\bfseries generate}
+\item 
+\mbox{\Hypertarget{class_normal_distribution_aef551958a237bce2c6e5ea2f10742bd1}\label{class_normal_distribution_aef551958a237bce2c6e5ea2f10742bd1}} 
+float {\bfseries z0}
+\item 
+\mbox{\Hypertarget{class_normal_distribution_a5366b865121db215e337e2238a988351}\label{class_normal_distribution_a5366b865121db215e337e2238a988351}} 
+float {\bfseries z1}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_normal_distribution_af476ede4785cf59ad4ef894baa3d1388}\label{class_normal_distribution_af476ede4785cf59ad4ef894baa3d1388}} 
+\textbf{ ostream} \& {\bfseries operator$<$$<$} (\textbf{ ostream} \&os, const \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution)
+\item 
+\mbox{\Hypertarget{class_normal_distribution_ae816f2a96eda8e6de20e204179f6cef3}\label{class_normal_distribution_ae816f2a96eda8e6de20e204179f6cef3}} 
+\textbf{ istream} \& {\bfseries operator$>$$>$} (\textbf{ istream} \&is, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution)
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+common/random.\+hxx\item 
+common/random.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_parse_turbines.tex b/docs/latex/class_parse_turbines.tex
new file mode 100644
index 00000000..12662312
--- /dev/null
+++ b/docs/latex/class_parse_turbines.tex
@@ -0,0 +1,30 @@
+\hypertarget{class_parse_turbines}{}\doxysection{Parse\+Turbines Class Reference}
+\label{class_parse_turbines}\index{ParseTurbines@{ParseTurbines}}
+\doxysubsection*{Classes}
+\begin{DoxyCompactItemize}
+\item 
+class {\bfseries Turbine\+Line}
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_parse_turbines_a17d1c386e532e47531c7138def35a1a5}\label{class_parse_turbines_a17d1c386e532e47531c7138def35a1a5}} 
+static void {\bfseries write\+Headers} (Buffered\+Writer bw, String\mbox{[}$\,$\mbox{]} column\+Names)  throws I\+O\+Exception 
+\item 
+\mbox{\Hypertarget{class_parse_turbines_a995484f869c1a8fa5a90028572236308}\label{class_parse_turbines_a995484f869c1a8fa5a90028572236308}} 
+static void {\bfseries main} (String\mbox{[}$\,$\mbox{]} arguments)
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_parse_turbines_a3ad4e1811d19cec2e64d939e2a1d8f81}\label{class_parse_turbines_a3ad4e1811d19cec2e64d939e2a1d8f81}} 
+static Simple\+Date\+Format {\bfseries sdf} = new Simple\+Date\+Format(\char`\"{}yyyy-\/MM-\/dd\textquotesingle{}T\textquotesingle{}H\+H\+:mm\+:ss\+X\+XX\char`\"{})
+\item 
+\mbox{\Hypertarget{class_parse_turbines_a60c1f15988dc560f5c5a28c51d02a26f}\label{class_parse_turbines_a60c1f15988dc560f5c5a28c51d02a26f}} 
+static int {\bfseries num\+\_\+column} = 122
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+datasets/2020\+\_\+engie\+\_\+wind/Parse\+Turbines.\+java\end{DoxyCompactItemize}
diff --git a/docs/latex/class_point.tex b/docs/latex/class_point.tex
new file mode 100644
index 00000000..e887aa00
--- /dev/null
+++ b/docs/latex/class_point.tex
@@ -0,0 +1,23 @@
+\hypertarget{class_point}{}\doxysection{Point Class Reference}
+\label{class_point}\index{Point@{Point}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_point_ae5af86d9f01d1707873318989f7c4088}\label{class_point_ae5af86d9f01d1707873318989f7c4088}} 
+{\bfseries Point} (int \+\_\+y, int \+\_\+x)
+\end{DoxyCompactItemize}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_point_a2e1b5fb2b2a83571f5c0bc0f66a73cf7}\label{class_point_a2e1b5fb2b2a83571f5c0bc0f66a73cf7}} 
+int {\bfseries y}
+\item 
+\mbox{\Hypertarget{class_point_a8c779e11e694b20e0946105a9f5de842}\label{class_point_a8c779e11e694b20e0946105a9f5de842}} 
+int {\bfseries x}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/mosaic\+\_\+image\+\_\+set.\+hxx\item 
+image\+\_\+tools/mosaic\+\_\+image\+\_\+set.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_r_a_n_d_o_m___d_a_g___node.eps b/docs/latex/class_r_a_n_d_o_m___d_a_g___node.eps
new file mode 100644
index 00000000..1f915b25
--- /dev/null
+++ b/docs/latex/class_r_a_n_d_o_m___d_a_g___node.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 272.108844
+%%Pages: 0
+%%BeginSetup
+%%EndSetup
+%%EndComments
+
+% ----- variables -----
+
+/boxwidth 0 def
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+/disty 40 def
+/boundaspect 1.837500 def  % aspect ratio of the BoundingBox (width/height)
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+
+% ----- procedures -----
+
+/dotted { [1 4] 0 setdash } def
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+/solid  { [] 0 setdash } def
+
+/max % result = MAX(arg1,arg2)
+{
+  /a exch def
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+  a b gt {a} {b} ifelse
+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
+} def
+
+/box % draws a box with text 'arg1' at grid pos (arg2,arg3)
+{ gsave
+  2 setlinewidth
+  newpath
+  exch xspacing mul xoffset add
+  exch yspacing mul
+  moveto
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+  0 boxheight rlineto 
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+  closepath
+  dup stringwidth pop neg boxwidth add 2 div
+  boxheight fontheight 2 div sub 2 div
+  rmoveto show stroke
+  grestore
+} def  
+
+/mark
+{ newpath
+  exch xspacing mul xoffset add boxwidth add
+  exch yspacing mul
+  moveto
+  0 boxheight 4 div rlineto
+  boxheight neg 4 div boxheight neg 4 div rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/arrow
+{ newpath
+  moveto
+  3 -8 rlineto
+  -6 0 rlineto
+  3 8 rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/out % draws an output connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight add
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/in % draws an input connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul disty 2 div sub
+  /y exch def
+  /x exch def
+  x y moveto
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+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/hedge
+{
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight 2 div sub
+  /y exch def
+  /x exch def
+  newpath
+  x y moveto
+  boxwidth 2 div distx add 0 rlineto
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+} def
+
+/vedge
+{
+  /ye exch def
+  /ys exch def
+  /xs exch def
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+  ys yspacing mul boxheight 2 div sub
+  moveto
+  ye yspacing mul boxheight 2 div sub
+  lineto
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+} def
+
+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
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+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(RANDOM_DAG_Node) cw
+(RNN_Node_Interface) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (RANDOM_DAG_Node) 0.000000 0.000000 box
+ (RNN_Node_Interface) 0.000000 1.000000 box
+
+% ----- relations -----
+
+solid
+0 0.000000 0.000000 out
+solid
+1 0.000000 1.000000 in
diff --git a/docs/latex/class_r_a_n_d_o_m___d_a_g___node.tex b/docs/latex/class_r_a_n_d_o_m___d_a_g___node.tex
new file mode 100644
index 00000000..a3d94b5a
--- /dev/null
+++ b/docs/latex/class_r_a_n_d_o_m___d_a_g___node.tex
@@ -0,0 +1,123 @@
+\hypertarget{class_r_a_n_d_o_m___d_a_g___node}{}\doxysection{R\+A\+N\+D\+O\+M\+\_\+\+D\+A\+G\+\_\+\+Node Class Reference}
+\label{class_r_a_n_d_o_m___d_a_g___node}\index{RANDOM\_DAG\_Node@{RANDOM\_DAG\_Node}}
+Inheritance diagram for R\+A\+N\+D\+O\+M\+\_\+\+D\+A\+G\+\_\+\+Node\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_r_a_n_d_o_m___d_a_g___node}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_adec1b9be9f1931ba4cf7aa01741ffed3}\label{class_r_a_n_d_o_m___d_a_g___node_adec1b9be9f1931ba4cf7aa01741ffed3}} 
+{\bfseries R\+A\+N\+D\+O\+M\+\_\+\+D\+A\+G\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+type, double \+\_\+depth)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a2e4c0aec006309beaf41684fd7f2d283}\label{class_r_a_n_d_o_m___d_a_g___node_a2e4c0aec006309beaf41684fd7f2d283}} 
+void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a58bd17b4e9c7209fccf861f8fab687aa}\label{class_r_a_n_d_o_m___d_a_g___node_a58bd17b4e9c7209fccf861f8fab687aa}} 
+void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng1\+\_\+1, double range)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_af66b9326a1c62354bf529f4d7ab1b6ad}\label{class_r_a_n_d_o_m___d_a_g___node_af66b9326a1c62354bf529f4d7ab1b6ad}} 
+void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a740ccf88947098a40be51070483508e5}\label{class_r_a_n_d_o_m___d_a_g___node_a740ccf88947098a40be51070483508e5}} 
+void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a67dd4045bf2333a399caee534469b5f7}\label{class_r_a_n_d_o_m___d_a_g___node_a67dd4045bf2333a399caee534469b5f7}} 
+double {\bfseries get\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a7cc10fd4d34b8b0e36cd91304041fdc1}\label{class_r_a_n_d_o_m___d_a_g___node_a7cc10fd4d34b8b0e36cd91304041fdc1}} 
+void {\bfseries print\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a4495aaab90263b73dfdc7cb1abfa235d}\label{class_r_a_n_d_o_m___d_a_g___node_a4495aaab90263b73dfdc7cb1abfa235d}} 
+double {\bfseries activation} (double value, int act\+\_\+operator)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a5d6bb3b52bb80226009f89a4ec84de28}\label{class_r_a_n_d_o_m___d_a_g___node_a5d6bb3b52bb80226009f89a4ec84de28}} 
+double {\bfseries activation\+\_\+derivative} (double value, double input, int act\+\_\+operator)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a1d9556dd97cc2d1b784f172666fe7015}\label{class_r_a_n_d_o_m___d_a_g___node_a1d9556dd97cc2d1b784f172666fe7015}} 
+void {\bfseries input\+\_\+fired} (int time, double incoming\+\_\+output)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a6314cb9edd1d044c3092891976cb5239}\label{class_r_a_n_d_o_m___d_a_g___node_a6314cb9edd1d044c3092891976cb5239}} 
+void {\bfseries try\+\_\+update\+\_\+deltas} (int time)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a04b077e1127db3212b5453457d32960c}\label{class_r_a_n_d_o_m___d_a_g___node_a04b077e1127db3212b5453457d32960c}} 
+void {\bfseries error\+\_\+fired} (int time, double error)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a516182d6897e7ae6ce88cbe1978a9bb2}\label{class_r_a_n_d_o_m___d_a_g___node_a516182d6897e7ae6ce88cbe1978a9bb2}} 
+void {\bfseries output\+\_\+fired} (int time, double delta)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_ab30c087e233c86c0d07722ae1f755075}\label{class_r_a_n_d_o_m___d_a_g___node_ab30c087e233c86c0d07722ae1f755075}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a13a43059ceda27b97579e6437c48a3d1}\label{class_r_a_n_d_o_m___d_a_g___node_a13a43059ceda27b97579e6437c48a3d1}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_adc220aff7ecee8b15ae0919fe8ca1071}\label{class_r_a_n_d_o_m___d_a_g___node_adc220aff7ecee8b15ae0919fe8ca1071}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a36381c7fea6088573b91811d9e02ff42}\label{class_r_a_n_d_o_m___d_a_g___node_a36381c7fea6088573b91811d9e02ff42}} 
+void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a8e05477f90a398d0ae066b17ad192583}\label{class_r_a_n_d_o_m___d_a_g___node_a8e05477f90a398d0ae066b17ad192583}} 
+void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a8407b237aa07eeac13d6729e7e414130}\label{class_r_a_n_d_o_m___d_a_g___node_a8407b237aa07eeac13d6729e7e414130}} 
+void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a4896518988d24bce6d87abef2a8ff618}\label{class_r_a_n_d_o_m___d_a_g___node_a4896518988d24bce6d87abef2a8ff618}} 
+void {\bfseries reset} (int \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a16a7e4e713cc5cfb0981b89306ae4d40}\label{class_r_a_n_d_o_m___d_a_g___node_a16a7e4e713cc5cfb0981b89306ae4d40}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a095f8dce9c8d61f98f305ed1b4699afa}\label{class_r_a_n_d_o_m___d_a_g___node_a095f8dce9c8d61f98f305ed1b4699afa}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_af0f334e481df8d85e25782ae57d18ab4}\label{class_r_a_n_d_o_m___d_a_g___node_af0f334e481df8d85e25782ae57d18ab4}} 
+\textbf{ vector}$<$ int $>$ {\bfseries node\+\_\+output}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a6d00d0b268d442a0b37ceb3856f85be9}\label{class_r_a_n_d_o_m___d_a_g___node_a6d00d0b268d442a0b37ceb3856f85be9}} 
+double {\bfseries rw}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a2e51ac16c91ff6bf22aa217a26c7d956}\label{class_r_a_n_d_o_m___d_a_g___node_a2e51ac16c91ff6bf22aa217a26c7d956}} 
+double {\bfseries zw}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a6639205d23348856f0c8591121131830}\label{class_r_a_n_d_o_m___d_a_g___node_a6639205d23348856f0c8591121131830}} 
+\textbf{ vector}$<$ double $>$ {\bfseries weights}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a48afb2bea453a271dce3e005b9bc8510}\label{class_r_a_n_d_o_m___d_a_g___node_a48afb2bea453a271dce3e005b9bc8510}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+zw}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_ab67321581146fae8017c8b19a7f83383}\label{class_r_a_n_d_o_m___d_a_g___node_ab67321581146fae8017c8b19a7f83383}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+rw}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a273ce64dcabb4bf4c4722285c62924be}\label{class_r_a_n_d_o_m___d_a_g___node_a273ce64dcabb4bf4c4722285c62924be}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ {\bfseries d\+\_\+weights}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a4884b63d89fd68219f26dde4cbd4915f}\label{class_r_a_n_d_o_m___d_a_g___node_a4884b63d89fd68219f26dde4cbd4915f}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+h\+\_\+prev}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_aec949ee089f5998c899c9f0c69759378}\label{class_r_a_n_d_o_m___d_a_g___node_aec949ee089f5998c899c9f0c69759378}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ {\bfseries Nodes}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_abbd47151e3b1d958829706925f5f3eff}\label{class_r_a_n_d_o_m___d_a_g___node_abbd47151e3b1d958829706925f5f3eff}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ {\bfseries l\+\_\+\+Nodes}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_a_n_d_o_m___d_a_g___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_r_a_n_d_o_m___d_a_g___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\end{DoxyCompactItemize}
+\doxysubsection*{Additional Inherited Members}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/random\+\_\+dag\+\_\+node.\+hxx\item 
+rnn/random\+\_\+dag\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_r_n_n.tex b/docs/latex/class_r_n_n.tex
new file mode 100644
index 00000000..b981a84d
--- /dev/null
+++ b/docs/latex/class_r_n_n.tex
@@ -0,0 +1,230 @@
+\hypertarget{class_r_n_n}{}\doxysection{R\+NN Class Reference}
+\label{class_r_n_n}\index{RNN@{RNN}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n_a21abeabbb35cbd741947ad14dd2b34ee}\label{class_r_n_n_a21abeabbb35cbd741947ad14dd2b34ee}} 
+{\bfseries R\+NN} (\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ \&\+\_\+nodes, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ $>$ \&\+\_\+edges, const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&output\+\_\+parameter\+\_\+names)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a64568874f663d44ee0fef78b439e36b1}\label{class_r_n_n_a64568874f663d44ee0fef78b439e36b1}} 
+{\bfseries R\+NN} (\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ \&\+\_\+nodes, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ $>$ \&\+\_\+edges, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$ $>$ \&\+\_\+recurrent\+\_\+edges, const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&output\+\_\+parameter\+\_\+names)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a800ff6a57eda063798e081d56dad4659}\label{class_r_n_n_a800ff6a57eda063798e081d56dad4659}} 
+void {\bfseries fix\+\_\+parameter\+\_\+orders} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&output\+\_\+parameter\+\_\+names)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a77c4b96d7c7f5ae4a0424b89299c3596}\label{class_r_n_n_a77c4b96d7c7f5ae4a0424b89299c3596}} 
+void {\bfseries validate\+\_\+parameters} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&output\+\_\+parameter\+\_\+names)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a6b6ed3e806e12ab441a05983ede06338}\label{class_r_n_n_a6b6ed3e806e12ab441a05983ede06338}} 
+int {\bfseries get\+\_\+number\+\_\+nodes} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n_a88e40fc2dee042a8812aefce69c0c6b7}\label{class_r_n_n_a88e40fc2dee042a8812aefce69c0c6b7}} 
+int {\bfseries get\+\_\+number\+\_\+edges} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n_afd9b76cd6e8b6b7412fd7604e414a8e2}\label{class_r_n_n_afd9b76cd6e8b6b7412fd7604e414a8e2}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries get\+\_\+node} (int i)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a6c481f94d0d061a102a0d4d6586452ac}\label{class_r_n_n_a6c481f94d0d061a102a0d4d6586452ac}} 
+\mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ {\bfseries get\+\_\+edge} (int i)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a09548131fe6647737628f8803f7555b9}\label{class_r_n_n_a09548131fe6647737628f8803f7555b9}} 
+void {\bfseries forward\+\_\+pass} (const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&series\+\_\+data, bool using\+\_\+dropout, bool training, double dropout\+\_\+probability)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a36a017fe90949a25e8368a03482712b0}\label{class_r_n_n_a36a017fe90949a25e8368a03482712b0}} 
+void {\bfseries backward\+\_\+pass} (double error, bool using\+\_\+dropout, bool training, double dropout\+\_\+probability)
+\item 
+double \mbox{\hyperlink{class_r_n_n_aa5fb8d612f560a05bfa188453578c1a2}{calculate\+\_\+error\+\_\+softmax}} (const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected\+\_\+outputs)
+\begin{DoxyCompactList}\small\item\em Calculates the sum of cross entropy error by comparing the expected outputs and the predicted outputs. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n_a99cb157b0238b827561808c92719b24f}\label{class_r_n_n_a99cb157b0238b827561808c92719b24f}} 
+double {\bfseries calculate\+\_\+error\+\_\+mse} (const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected\+\_\+outputs)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a4b33d44e30062abd3caf1582aeadadd6}\label{class_r_n_n_a4b33d44e30062abd3caf1582aeadadd6}} 
+double {\bfseries calculate\+\_\+error\+\_\+mae} (const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected\+\_\+outputs)
+\item 
+double \mbox{\hyperlink{class_r_n_n_a7245cfe333987f29d59dd1c1442391ec}{prediction\+\_\+softmax}} (const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&series\+\_\+data, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected\+\_\+outputs, bool using\+\_\+dropout, bool training, double dropout\+\_\+probability)
+\begin{DoxyCompactList}\small\item\em Calls the calculate\+\_\+error\+\_\+softmax after the forward pass across the rnn genome. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n_a70c2fd7634e15fcceba72dcc350f3cd9}\label{class_r_n_n_a70c2fd7634e15fcceba72dcc350f3cd9}} 
+double {\bfseries prediction\+\_\+mse} (const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&series\+\_\+data, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected\+\_\+outputs, bool using\+\_\+dropout, bool training, double dropout\+\_\+probability)
+\item 
+\mbox{\Hypertarget{class_r_n_n_abc61ce5eb7ccb4b027aab28f01dfb578}\label{class_r_n_n_abc61ce5eb7ccb4b027aab28f01dfb578}} 
+double {\bfseries prediction\+\_\+mae} (const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&series\+\_\+data, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected\+\_\+outputs, bool using\+\_\+dropout, bool training, double dropout\+\_\+probability)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a5ccda82155037f616c6db9bb73c52b3b}\label{class_r_n_n_a5ccda82155037f616c6db9bb73c52b3b}} 
+\textbf{ vector}$<$ double $>$ {\bfseries get\+\_\+predictions} (const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&series\+\_\+data, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected\+\_\+outputs, bool usng\+\_\+dropout, double dropout\+\_\+probability)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a6b951718d90f8a3398a500816aa0b25a}\label{class_r_n_n_a6b951718d90f8a3398a500816aa0b25a}} 
+void {\bfseries write\+\_\+predictions} (\textbf{ string} output\+\_\+filename, const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&output\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&series\+\_\+data, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected\+\_\+outputs, \mbox{\hyperlink{class_time_series_sets}{Time\+Series\+Sets}} $\ast$time\+\_\+series\+\_\+sets, bool using\+\_\+dropout, double dropout\+\_\+probability)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a45ff518bedc99a07d557b9bdaacd3bcc}\label{class_r_n_n_a45ff518bedc99a07d557b9bdaacd3bcc}} 
+void {\bfseries write\+\_\+predictions} (\textbf{ string} output\+\_\+filename, const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&output\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&series\+\_\+data, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected\+\_\+outputs, \mbox{\hyperlink{class_corpus}{Corpus}} $\ast$word\+\_\+series\+\_\+sets, bool using\+\_\+dropout, double dropout\+\_\+probability)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a32e059e267405b96be71b7476d96e3d4}\label{class_r_n_n_a32e059e267405b96be71b7476d96e3d4}} 
+void {\bfseries initialize\+\_\+randomly} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n_a69e4bba4cb37eae14acbb56027c3ac69}\label{class_r_n_n_a69e4bba4cb37eae14acbb56027c3ac69}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a5ab51c54eafb4349472563cd75c8da6e}\label{class_r_n_n_a5ab51c54eafb4349472563cd75c8da6e}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a31b31a223ac1d528361e537765942784}\label{class_r_n_n_a31b31a223ac1d528361e537765942784}} 
+void {\bfseries enable\+\_\+use\+\_\+regression} (bool \+\_\+use\+\_\+regression)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a5078184d1b06414742a10cdf413283c2}\label{class_r_n_n_a5078184d1b06414742a10cdf413283c2}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} ()
+\item 
+void \mbox{\hyperlink{class_r_n_n_aad5f51508b5cb978a6343e3234bb8892}{get\+\_\+analytic\+\_\+gradient}} (const \textbf{ vector}$<$ double $>$ \&test\+\_\+parameters, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&outputs, double \&mse, \textbf{ vector}$<$ double $>$ \&analytic\+\_\+gradient, bool using\+\_\+dropout, bool training, double dropout\+\_\+probability)
+\begin{DoxyCompactList}\small\item\em Updates the analytic gradients after the forward pass across the rnn genome and the backward pass sequentially. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n_a7a81b82f7e69907f7d5f2ce37048db68}\label{class_r_n_n_a7a81b82f7e69907f7d5f2ce37048db68}} 
+void {\bfseries get\+\_\+empirical\+\_\+gradient} (const \textbf{ vector}$<$ double $>$ \&test\+\_\+parameters, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&outputs, double \&mae, \textbf{ vector}$<$ double $>$ \&empirical\+\_\+gradient, bool using\+\_\+dropout, bool training, double dropout\+\_\+probability)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+int \mbox{\hyperlink{class_r_n_n_ad70d91c21e6cd8890467d3f64eac0b9a}{series\+\_\+length}}
+\begin{DoxyCompactList}\small\item\em Specifies the length of the dataset. \end{DoxyCompactList}\item 
+bool \mbox{\hyperlink{class_r_n_n_a17b9ce91b0ad9f0848f296021e5acd5f}{use\+\_\+regression}}
+\begin{DoxyCompactList}\small\item\em Specifies whether to use the regression or not. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n_a1737ef6591c418cd8accf3c55c1909c1}\label{class_r_n_n_a1737ef6591c418cd8accf3c55c1909c1}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ {\bfseries input\+\_\+nodes}
+\item 
+\mbox{\Hypertarget{class_r_n_n_a40e160514ff6c67b7c13d9ac98cd4027}\label{class_r_n_n_a40e160514ff6c67b7c13d9ac98cd4027}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ {\bfseries output\+\_\+nodes}
+\item 
+\mbox{\Hypertarget{class_r_n_n_afe1275047d2603912692c9ee4ce371b5}\label{class_r_n_n_afe1275047d2603912692c9ee4ce371b5}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ {\bfseries nodes}
+\item 
+\mbox{\Hypertarget{class_r_n_n_a6db496ced949fb7a2374b436d516cfa9}\label{class_r_n_n_a6db496ced949fb7a2374b436d516cfa9}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ $>$ {\bfseries edges}
+\item 
+\mbox{\Hypertarget{class_r_n_n_a8538540654aacffe64fda78d83f14c69}\label{class_r_n_n_a8538540654aacffe64fda78d83f14c69}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$ $>$ {\bfseries recurrent\+\_\+edges}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n_a3c6fd1b1841f1808870f8f228c5d021e}\label{class_r_n_n_a3c6fd1b1841f1808870f8f228c5d021e}} 
+void {\bfseries get\+\_\+mse} (\mbox{\hyperlink{class_r_n_n}{R\+NN}} $\ast$genome, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected, double \&mse, \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&deltas)
+\item 
+\mbox{\Hypertarget{class_r_n_n_a744ea213e57442af35ac90ea397ce97c}\label{class_r_n_n_a744ea213e57442af35ac90ea397ce97c}} 
+void {\bfseries get\+\_\+mae} (\mbox{\hyperlink{class_r_n_n}{R\+NN}} $\ast$genome, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected, double \&mae, \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&deltas)
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_r_n_n_aa5fb8d612f560a05bfa188453578c1a2}\label{class_r_n_n_aa5fb8d612f560a05bfa188453578c1a2}} 
+\index{RNN@{RNN}!calculate\_error\_softmax@{calculate\_error\_softmax}}
+\index{calculate\_error\_softmax@{calculate\_error\_softmax}!RNN@{RNN}}
+\doxysubsubsection{\texorpdfstring{calculate\_error\_softmax()}{calculate\_error\_softmax()}}
+{\footnotesize\ttfamily double R\+N\+N\+::calculate\+\_\+error\+\_\+softmax (\begin{DoxyParamCaption}\item[{const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&}]{expected\+\_\+outputs }\end{DoxyParamCaption})}
+
+
+
+Calculates the sum of cross entropy error by comparing the expected outputs and the predicted outputs. 
+
+~\newline
+
+
+
+\begin{DoxyParams}{Parameters}
+{\em expected\+\_\+outputs} & is the expected outputs according the dataset.\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+sum of the cross entropy error. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_r_n_n_aad5f51508b5cb978a6343e3234bb8892}\label{class_r_n_n_aad5f51508b5cb978a6343e3234bb8892}} 
+\index{RNN@{RNN}!get\_analytic\_gradient@{get\_analytic\_gradient}}
+\index{get\_analytic\_gradient@{get\_analytic\_gradient}!RNN@{RNN}}
+\doxysubsubsection{\texorpdfstring{get\_analytic\_gradient()}{get\_analytic\_gradient()}}
+{\footnotesize\ttfamily void R\+N\+N\+::get\+\_\+analytic\+\_\+gradient (\begin{DoxyParamCaption}\item[{const \textbf{ vector}$<$ double $>$ \&}]{test\+\_\+parameters,  }\item[{const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&}]{inputs,  }\item[{const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&}]{outputs,  }\item[{double \&}]{mse,  }\item[{\textbf{ vector}$<$ double $>$ \&}]{analytic\+\_\+gradient,  }\item[{bool}]{using\+\_\+dropout,  }\item[{bool}]{training,  }\item[{double}]{dropout\+\_\+probability }\end{DoxyParamCaption})}
+
+
+
+Updates the analytic gradients after the forward pass across the rnn genome and the backward pass sequentially. 
+
+~\newline
+
+
+
+\begin{DoxyParams}{Parameters}
+{\em test\+\_\+parameters} & is the dataset parameters used for the forward pass. \\
+\hline
+{\em inputs} & are the inputs according to the dataset that is pass to the for forward pass. \\
+\hline
+{\em outputs} & are the expected outputs according to the dataset that is pass to the calculate error for backward pass. \\
+\hline
+{\em analytic\+\_\+gradients} & are the current gradients in the rnn genome that are going to be update after a single pass across the rnn genome. \\
+\hline
+{\em using\+\_\+dropout} & is the probability for the node being disabled while forward pass training and not during testing. ~\newline
+ \\
+\hline
+{\em training} & is to specify whether it is training stage or not to use dropout. \\
+\hline
+{\em dropout\+\_\+probability} & is the probability by which the the nodes will be disabled. will not work during testing stage and without use\+\_\+droput = true.\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+sum of the cross entropy error over the dataset. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_r_n_n_a7245cfe333987f29d59dd1c1442391ec}\label{class_r_n_n_a7245cfe333987f29d59dd1c1442391ec}} 
+\index{RNN@{RNN}!prediction\_softmax@{prediction\_softmax}}
+\index{prediction\_softmax@{prediction\_softmax}!RNN@{RNN}}
+\doxysubsubsection{\texorpdfstring{prediction\_softmax()}{prediction\_softmax()}}
+{\footnotesize\ttfamily double R\+N\+N\+::prediction\+\_\+softmax (\begin{DoxyParamCaption}\item[{const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&}]{series\+\_\+data,  }\item[{const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&}]{expected\+\_\+outputs,  }\item[{bool}]{using\+\_\+dropout,  }\item[{bool}]{training,  }\item[{double}]{dropout\+\_\+probability }\end{DoxyParamCaption})}
+
+
+
+Calls the calculate\+\_\+error\+\_\+softmax after the forward pass across the rnn genome. 
+
+~\newline
+
+
+
+\begin{DoxyParams}{Parameters}
+{\em series\+\_\+data} & is the dataset used for the forward pass. \\
+\hline
+{\em expected\+\_\+outputs} & is the expected outputs according to the dataset. \\
+\hline
+{\em using\+\_\+dropout} & is the probability for the node being disabled while forward pass training and not during testing. ~\newline
+ \\
+\hline
+{\em training} & is to specify whether it is training stage or not to use dropout. \\
+\hline
+{\em dropout\+\_\+probability} & is the probability by which the the nodes will be disabled. will not work during testing stage and without use\+\_\+droput = true.\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+sum of the cross entropy error over the dataset. 
+\end{DoxyReturn}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_r_n_n_ad70d91c21e6cd8890467d3f64eac0b9a}\label{class_r_n_n_ad70d91c21e6cd8890467d3f64eac0b9a}} 
+\index{RNN@{RNN}!series\_length@{series\_length}}
+\index{series\_length@{series\_length}!RNN@{RNN}}
+\doxysubsubsection{\texorpdfstring{series\_length}{series\_length}}
+{\footnotesize\ttfamily int R\+N\+N\+::series\+\_\+length\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies the length of the dataset. 
+
+~\newline
+ It can be the number of the files in case of time series or number of batches in case of word series \mbox{\Hypertarget{class_r_n_n_a17b9ce91b0ad9f0848f296021e5acd5f}\label{class_r_n_n_a17b9ce91b0ad9f0848f296021e5acd5f}} 
+\index{RNN@{RNN}!use\_regression@{use\_regression}}
+\index{use\_regression@{use\_regression}!RNN@{RNN}}
+\doxysubsubsection{\texorpdfstring{use\_regression}{use\_regression}}
+{\footnotesize\ttfamily bool R\+N\+N\+::use\+\_\+regression\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies whether to use the regression or not. 
+
+~\newline
+ It will use regression in case of time series and will not use regression in case of word series 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn.\+hxx\item 
+rnn/rnn.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_r_n_n___edge.tex b/docs/latex/class_r_n_n___edge.tex
new file mode 100644
index 00000000..b8b52c1d
--- /dev/null
+++ b/docs/latex/class_r_n_n___edge.tex
@@ -0,0 +1,119 @@
+\hypertarget{class_r_n_n___edge}{}\doxysection{R\+N\+N\+\_\+\+Edge Class Reference}
+\label{class_r_n_n___edge}\index{RNN\_Edge@{RNN\_Edge}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a5ac3e7d542f6c73630fa2fa6180e6a6e}\label{class_r_n_n___edge_a5ac3e7d542f6c73630fa2fa6180e6a6e}} 
+{\bfseries R\+N\+N\+\_\+\+Edge} (int32\+\_\+t \+\_\+innovation\+\_\+number, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$\+\_\+input\+\_\+node, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$\+\_\+output\+\_\+node)
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a83cead431f54004364db7a35a1b28b33}\label{class_r_n_n___edge_a83cead431f54004364db7a35a1b28b33}} 
+{\bfseries R\+N\+N\+\_\+\+Edge} (int32\+\_\+t \+\_\+innovation\+\_\+number, int32\+\_\+t \+\_\+input\+\_\+innovation\+\_\+number, int32\+\_\+t \+\_\+output\+\_\+innovation\+\_\+number, const \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ \&nodes)
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_affee08331aa22823e144e44575a624c8}\label{class_r_n_n___edge_affee08331aa22823e144e44575a624c8}} 
+\mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ {\bfseries copy} (const \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ new\+\_\+nodes)
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_af2dabd1c3c19630cd73091220369db9a}\label{class_r_n_n___edge_af2dabd1c3c19630cd73091220369db9a}} 
+void {\bfseries reset} (int32\+\_\+t series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_abf10ac845aca38a8a4348c9f9882a3f8}\label{class_r_n_n___edge_abf10ac845aca38a8a4348c9f9882a3f8}} 
+void {\bfseries propagate\+\_\+forward} (int32\+\_\+t time)
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_ac30711ae1b1d5cd4de60c8d36b4f2402}\label{class_r_n_n___edge_ac30711ae1b1d5cd4de60c8d36b4f2402}} 
+void {\bfseries propagate\+\_\+backward} (int32\+\_\+t time)
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a2ce7cd502eb446048a50c73dbbee3fa8}\label{class_r_n_n___edge_a2ce7cd502eb446048a50c73dbbee3fa8}} 
+void {\bfseries propagate\+\_\+forward} (int32\+\_\+t time, bool training, double dropout\+\_\+probability)
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a8dfd3965968c1f388c167740d5d467b1}\label{class_r_n_n___edge_a8dfd3965968c1f388c167740d5d467b1}} 
+void {\bfseries propagate\+\_\+backward} (int32\+\_\+t time, bool training, double dropout\+\_\+probability)
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a9da85112ebe0c15a130561512416ac50}\label{class_r_n_n___edge_a9da85112ebe0c15a130561512416ac50}} 
+double {\bfseries get\+\_\+gradient} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a6e46cad9dc07f64dd53bc69c4cc24cbf}\label{class_r_n_n___edge_a6e46cad9dc07f64dd53bc69c4cc24cbf}} 
+int32\+\_\+t {\bfseries get\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a08c8bcf4490c93eacb8b56f138a5cdc9}\label{class_r_n_n___edge_a08c8bcf4490c93eacb8b56f138a5cdc9}} 
+int32\+\_\+t {\bfseries get\+\_\+input\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a19acff4994685e5511fe68c7e023ee1f}\label{class_r_n_n___edge_a19acff4994685e5511fe68c7e023ee1f}} 
+int32\+\_\+t {\bfseries get\+\_\+output\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_ad23ce64daa1ca24e3b44ba7921178e05}\label{class_r_n_n___edge_ad23ce64daa1ca24e3b44ba7921178e05}} 
+const \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries get\+\_\+input\+\_\+node} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a41e97bea2f6bd77f7d4a37537e5fcccd}\label{class_r_n_n___edge_a41e97bea2f6bd77f7d4a37537e5fcccd}} 
+const \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries get\+\_\+output\+\_\+node} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a93635d648cef357f25b4be265f0d35b4}\label{class_r_n_n___edge_a93635d648cef357f25b4be265f0d35b4}} 
+bool {\bfseries is\+\_\+enabled} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a82f0ba53ee029112f11764d600253c0b}\label{class_r_n_n___edge_a82f0ba53ee029112f11764d600253c0b}} 
+bool {\bfseries is\+\_\+reachable} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a37e3db9194813ac62f97e12c787a3ab8}\label{class_r_n_n___edge_a37e3db9194813ac62f97e12c787a3ab8}} 
+bool {\bfseries equals} (\mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$other) const
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_adfd1832a680684a52bd5cb2a01516bab}\label{class_r_n_n___edge_adfd1832a680684a52bd5cb2a01516bab}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a0b5b4a80326fce5684fc3ce8f6ead337}\label{class_r_n_n___edge_a0b5b4a80326fce5684fc3ce8f6ead337}} 
+int32\+\_\+t {\bfseries innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a95ca42172215ae81b0746a72ed626379}\label{class_r_n_n___edge_a95ca42172215ae81b0746a72ed626379}} 
+\textbf{ vector}$<$ double $>$ {\bfseries outputs}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a6d46039bb8ac92466a2abbd7cf926aab}\label{class_r_n_n___edge_a6d46039bb8ac92466a2abbd7cf926aab}} 
+\textbf{ vector}$<$ double $>$ {\bfseries deltas}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a12b8c7737fc0cd6d625de8ed52615f0d}\label{class_r_n_n___edge_a12b8c7737fc0cd6d625de8ed52615f0d}} 
+\textbf{ vector}$<$ bool $>$ {\bfseries dropped\+\_\+out}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a62d076001bdfe871de0fb94f19caab3a}\label{class_r_n_n___edge_a62d076001bdfe871de0fb94f19caab3a}} 
+double {\bfseries weight}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a6ccfe9204c48430f1c6291098827ea6e}\label{class_r_n_n___edge_a6ccfe9204c48430f1c6291098827ea6e}} 
+double {\bfseries d\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a35d14d51918ce7ac7ce0ac36ed24914b}\label{class_r_n_n___edge_a35d14d51918ce7ac7ce0ac36ed24914b}} 
+bool {\bfseries enabled}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_ada1c0cfe252b6ce5e09ff3661e4e1836}\label{class_r_n_n___edge_ada1c0cfe252b6ce5e09ff3661e4e1836}} 
+bool {\bfseries forward\+\_\+reachable}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_aea5850e5b85d87c34ea6e3311a432c37}\label{class_r_n_n___edge_aea5850e5b85d87c34ea6e3311a432c37}} 
+bool {\bfseries backward\+\_\+reachable}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a25d80a7b19c875dc36d7060439388f0d}\label{class_r_n_n___edge_a25d80a7b19c875dc36d7060439388f0d}} 
+int32\+\_\+t {\bfseries input\+\_\+innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a6748311dc4fbac3f4c7b9653a7966667}\label{class_r_n_n___edge_a6748311dc4fbac3f4c7b9653a7966667}} 
+int32\+\_\+t {\bfseries output\+\_\+innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_ad7ca422248fcb876d3f1f2656099f32c}\label{class_r_n_n___edge_ad7ca422248fcb876d3f1f2656099f32c}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries input\+\_\+node}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a8f9625396d3501fd1158f726b632df89}\label{class_r_n_n___edge_a8f9625396d3501fd1158f726b632df89}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries output\+\_\+node}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_ad7617134ea6662be9dc1ad79223de4d1}\label{class_r_n_n___edge_ad7617134ea6662be9dc1ad79223de4d1}} 
+class {\bfseries R\+N\+N\+\_\+\+Genome}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a67a4ae33f841a6e1d186c84e9490a802}\label{class_r_n_n___edge_a67a4ae33f841a6e1d186c84e9490a802}} 
+class {\bfseries R\+NN}
+\item 
+\mbox{\Hypertarget{class_r_n_n___edge_a7850c8d4e61c10934acf1a9a98347cf3}\label{class_r_n_n___edge_a7850c8d4e61c10934acf1a9a98347cf3}} 
+class {\bfseries E\+X\+A\+MM}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+edge.\+hxx\item 
+rnn/rnn\+\_\+edge.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_r_n_n___genome.tex b/docs/latex/class_r_n_n___genome.tex
new file mode 100644
index 00000000..652527d1
--- /dev/null
+++ b/docs/latex/class_r_n_n___genome.tex
@@ -0,0 +1,650 @@
+\hypertarget{class_r_n_n___genome}{}\doxysection{R\+N\+N\+\_\+\+Genome Class Reference}
+\label{class_r_n_n___genome}\index{RNN\_Genome@{RNN\_Genome}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a66960c0b91b46a46c6860d1174e42368}\label{class_r_n_n___genome_a66960c0b91b46a46c6860d1174e42368}} 
+void {\bfseries sort\+\_\+nodes\+\_\+by\+\_\+depth} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ab3743c3086ae83fd2475d5c064e6d0fe}\label{class_r_n_n___genome_ab3743c3086ae83fd2475d5c064e6d0fe}} 
+void {\bfseries sort\+\_\+edges\+\_\+by\+\_\+depth} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a72dc9b6a29ed0e8f64cc92b3de1b4d02}\label{class_r_n_n___genome_a72dc9b6a29ed0e8f64cc92b3de1b4d02}} 
+void {\bfseries sort\+\_\+recurrent\+\_\+edges\+\_\+by\+\_\+depth} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a0f5155af2c2d67c15e85510a94621bb8}\label{class_r_n_n___genome_a0f5155af2c2d67c15e85510a94621bb8}} 
+{\bfseries R\+N\+N\+\_\+\+Genome} (\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ \&\+\_\+nodes, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ $>$ \&\+\_\+edges, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$ $>$ \&\+\_\+recurrent\+\_\+edges, Weight\+Type \+\_\+weight\+\_\+initialize, Weight\+Type \+\_\+weight\+\_\+inheritance, Weight\+Type \+\_\+mutated\+\_\+component\+\_\+weight)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a091df20267aa5fc843bdaa84ac077efc}\label{class_r_n_n___genome_a091df20267aa5fc843bdaa84ac077efc}} 
+{\bfseries R\+N\+N\+\_\+\+Genome} (\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ \&\+\_\+nodes, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ $>$ \&\+\_\+edges, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$ $>$ \&\+\_\+recurrent\+\_\+edges, uint16\+\_\+t seed, Weight\+Type \+\_\+weight\+\_\+initialize, Weight\+Type \+\_\+weight\+\_\+inheritance, Weight\+Type \+\_\+mutated\+\_\+component\+\_\+weight)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a1782576a10611f574b3865ddafd7eb91}\label{class_r_n_n___genome_a1782576a10611f574b3865ddafd7eb91}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries copy} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a83f67d89955699b42fc1136eba088807}\label{class_r_n_n___genome_a83f67d89955699b42fc1136eba088807}} 
+\textbf{ string} {\bfseries print\+\_\+statistics} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aed26c23d65f7bb7ee67e2d79e87c2c72}\label{class_r_n_n___genome_aed26c23d65f7bb7ee67e2d79e87c2c72}} 
+void {\bfseries set\+\_\+parameter\+\_\+names} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+output\+\_\+parameter\+\_\+names)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a8a01d8879b7edd2969f4c972b3150bb6}\label{class_r_n_n___genome_a8a01d8879b7edd2969f4c972b3150bb6}} 
+\textbf{ string} {\bfseries generated\+\_\+by\+\_\+string} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a212131c42eca158e330d8f6a1092e171}\label{class_r_n_n___genome_a212131c42eca158e330d8f6a1092e171}} 
+\textbf{ string} {\bfseries get\+\_\+edge\+\_\+count\+\_\+str} (bool recurrent)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_adcb3339cd91e233d0a559ac989a02471}\label{class_r_n_n___genome_adcb3339cd91e233d0a559ac989a02471}} 
+\textbf{ string} {\bfseries get\+\_\+node\+\_\+count\+\_\+str} (int node\+\_\+type)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ad88ccbef55ee10ee240a65354653598c}\label{class_r_n_n___genome_ad88ccbef55ee10ee240a65354653598c}} 
+const \textbf{ map}$<$ \textbf{ string}, int $>$ $\ast$ {\bfseries get\+\_\+generated\+\_\+by\+\_\+map} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af11137101439173d6ba118353e88df24}\label{class_r_n_n___genome_af11137101439173d6ba118353e88df24}} 
+double {\bfseries get\+\_\+avg\+\_\+recurrent\+\_\+depth} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a9d0e0f59fd2b53d3743b1fe9be4c3fc9}\label{class_r_n_n___genome_a9d0e0f59fd2b53d3743b1fe9be4c3fc9}} 
+int32\+\_\+t {\bfseries get\+\_\+enabled\+\_\+edge\+\_\+count} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a5c14ba528c5f901b7b803087897520c2}\label{class_r_n_n___genome_a5c14ba528c5f901b7b803087897520c2}} 
+int32\+\_\+t {\bfseries get\+\_\+enabled\+\_\+recurrent\+\_\+edge\+\_\+count} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_acbd85bfd135b341d3d9a70d0ad822cbb}\label{class_r_n_n___genome_acbd85bfd135b341d3d9a70d0ad822cbb}} 
+int32\+\_\+t {\bfseries get\+\_\+enabled\+\_\+node\+\_\+count} (int node\+\_\+type)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a9bedc6a19b9e1e12935a3699e969fb71}\label{class_r_n_n___genome_a9bedc6a19b9e1e12935a3699e969fb71}} 
+int32\+\_\+t {\bfseries get\+\_\+node\+\_\+count} (int node\+\_\+type)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a06ac8fb6c99c6d38d0f4cb3f027e5801}\label{class_r_n_n___genome_a06ac8fb6c99c6d38d0f4cb3f027e5801}} 
+int32\+\_\+t {\bfseries get\+\_\+enabled\+\_\+node\+\_\+count} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a20ad53cfc8710b8fd430949468bbeb3b}\label{class_r_n_n___genome_a20ad53cfc8710b8fd430949468bbeb3b}} 
+int32\+\_\+t {\bfseries get\+\_\+node\+\_\+count} ()
+\item 
+double \mbox{\hyperlink{class_r_n_n___genome_a38239d73966179c24fc12254810b31ad}{get\+\_\+fitness}} () const
+\begin{DoxyCompactList}\small\item\em Calculates the fitness of the rnn genome across the dataset. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n___genome_abfcd45e830ba1314bba71a78714f8a2b}\label{class_r_n_n___genome_abfcd45e830ba1314bba71a78714f8a2b}} 
+double {\bfseries get\+\_\+best\+\_\+validation\+\_\+softmax} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aaf123cc513e0470e01b750d1abbf1157}\label{class_r_n_n___genome_aaf123cc513e0470e01b750d1abbf1157}} 
+double {\bfseries get\+\_\+best\+\_\+validation\+\_\+mse} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a97da8014031f402075d429084f0c80f6}\label{class_r_n_n___genome_a97da8014031f402075d429084f0c80f6}} 
+double {\bfseries get\+\_\+best\+\_\+validation\+\_\+mae} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a356fdef84cfe515b92361da844a08b92}\label{class_r_n_n___genome_a356fdef84cfe515b92361da844a08b92}} 
+void {\bfseries set\+\_\+normalize\+\_\+bounds} (\textbf{ string} \+\_\+normalize\+\_\+type, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+mins, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+maxs, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+avgs, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+std\+\_\+devs)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa1879125c00a2f10a0340c6710b67bc1}\label{class_r_n_n___genome_aa1879125c00a2f10a0340c6710b67bc1}} 
+\textbf{ string} {\bfseries get\+\_\+normalize\+\_\+type} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ae4c30737fb55176f366d8d610b78a55e}\label{class_r_n_n___genome_ae4c30737fb55176f366d8d610b78a55e}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+mins} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a40f8257d8b1ef0f0a0b182ba8b66d9b9}\label{class_r_n_n___genome_a40f8257d8b1ef0f0a0b182ba8b66d9b9}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+maxs} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ab6a390ad1c87a4878f2950142e62f3bc}\label{class_r_n_n___genome_ab6a390ad1c87a4878f2950142e62f3bc}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+avgs} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ad0db6c6233a6daa6f438cf2d5db0c9f2}\label{class_r_n_n___genome_ad0db6c6233a6daa6f438cf2d5db0c9f2}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+std\+\_\+devs} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a72cc75d302a64e3079e187cb8d64d61c}\label{class_r_n_n___genome_a72cc75d302a64e3079e187cb8d64d61c}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries get\+\_\+input\+\_\+parameter\+\_\+names} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ac452120765bcfbd9d37af84647162943}\label{class_r_n_n___genome_ac452120765bcfbd9d37af84647162943}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries get\+\_\+output\+\_\+parameter\+\_\+names} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a8534de9ea6357046eec7d2b6aff53422}\label{class_r_n_n___genome_a8534de9ea6357046eec7d2b6aff53422}} 
+int32\+\_\+t {\bfseries get\+\_\+group\+\_\+id} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a450b17a3e9914f8329078e4e82b85bf9}\label{class_r_n_n___genome_a450b17a3e9914f8329078e4e82b85bf9}} 
+void {\bfseries set\+\_\+group\+\_\+id} (int32\+\_\+t \+\_\+group\+\_\+id)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a007bc7f7ec3ab8c6f147c7960bf6ca69}\label{class_r_n_n___genome_a007bc7f7ec3ab8c6f147c7960bf6ca69}} 
+void {\bfseries set\+\_\+bp\+\_\+iterations} (int32\+\_\+t \+\_\+bp\+\_\+iterations)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a9cb77797f280bc0f6a98b627870478bf}\label{class_r_n_n___genome_a9cb77797f280bc0f6a98b627870478bf}} 
+int32\+\_\+t {\bfseries get\+\_\+bp\+\_\+iterations} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a249776f9a530e45b5e02f887d4fbc42d}\label{class_r_n_n___genome_a249776f9a530e45b5e02f887d4fbc42d}} 
+void {\bfseries set\+\_\+learning\+\_\+rate} (double \+\_\+learning\+\_\+rate)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ae0e1fb220409cb71afd0426fc87b69c5}\label{class_r_n_n___genome_ae0e1fb220409cb71afd0426fc87b69c5}} 
+void {\bfseries set\+\_\+adapt\+\_\+learning\+\_\+rate} (bool \+\_\+adapt\+\_\+learning\+\_\+rate)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_afcc133d26cd3b515eecb493b5d26e5e5}\label{class_r_n_n___genome_afcc133d26cd3b515eecb493b5d26e5e5}} 
+void {\bfseries set\+\_\+nesterov\+\_\+momentum} (bool \+\_\+use\+\_\+nesterov\+\_\+momentum)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ac51b8b5e4a0c52d9c74d8642eb3908c3}\label{class_r_n_n___genome_ac51b8b5e4a0c52d9c74d8642eb3908c3}} 
+void {\bfseries set\+\_\+reset\+\_\+weights} (bool \+\_\+use\+\_\+reset\+\_\+weights)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a23e757715bbd365f37df9034cb5e20db}\label{class_r_n_n___genome_a23e757715bbd365f37df9034cb5e20db}} 
+void {\bfseries disable\+\_\+high\+\_\+threshold} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af892ac7b3d0c85f604b0988835c7760d}\label{class_r_n_n___genome_af892ac7b3d0c85f604b0988835c7760d}} 
+void {\bfseries enable\+\_\+high\+\_\+threshold} (double \+\_\+high\+\_\+threshold)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a8f90bc578f49916e33702d388efea6c5}\label{class_r_n_n___genome_a8f90bc578f49916e33702d388efea6c5}} 
+void {\bfseries disable\+\_\+low\+\_\+threshold} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a9027d063eb6f547ad263d2524be060d1}\label{class_r_n_n___genome_a9027d063eb6f547ad263d2524be060d1}} 
+void {\bfseries enable\+\_\+low\+\_\+threshold} (double \+\_\+low\+\_\+threshold)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_abf866fb4c1137fde15ebdb1bcaba0c24}\label{class_r_n_n___genome_abf866fb4c1137fde15ebdb1bcaba0c24}} 
+void {\bfseries disable\+\_\+dropout} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a0b1e01c4938a89bfd6079e5eae0d3d64}\label{class_r_n_n___genome_a0b1e01c4938a89bfd6079e5eae0d3d64}} 
+void {\bfseries enable\+\_\+dropout} (double \+\_\+dropout\+\_\+probability)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a1ca1e60c581d2442d26a26f9dbc2ebc5}\label{class_r_n_n___genome_a1ca1e60c581d2442d26a26f9dbc2ebc5}} 
+void {\bfseries enable\+\_\+use\+\_\+regression} (bool \+\_\+use\+\_\+regression)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a87192a16e373ce2eaa81201b9fffeb42}\label{class_r_n_n___genome_a87192a16e373ce2eaa81201b9fffeb42}} 
+void {\bfseries set\+\_\+log\+\_\+filename} (\textbf{ string} \+\_\+log\+\_\+filename)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ade2a50c4611c1ebab333b53006741291}\label{class_r_n_n___genome_ade2a50c4611c1ebab333b53006741291}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af2bc003f2b4fb4ea301a1727b434e5ca}\label{class_r_n_n___genome_af2bc003f2b4fb4ea301a1727b434e5ca}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a264428965475586ea07857ec4ab682e2}\label{class_r_n_n___genome_a264428965475586ea07857ec4ab682e2}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa7855f35dc3459050d9c81a777996c9e}\label{class_r_n_n___genome_aa7855f35dc3459050d9c81a777996c9e}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+inputs} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a0ffec6a3fec90bc8e1db97948d2cd03c}\label{class_r_n_n___genome_a0ffec6a3fec90bc8e1db97948d2cd03c}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+outputs} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a1d46e77d530732d6a8f98d5b285f8811}\label{class_r_n_n___genome_a1d46e77d530732d6a8f98d5b285f8811}} 
+double {\bfseries get\+\_\+avg\+\_\+edge\+\_\+weight} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aca040bbc38324fd184f0724a4b3329ad}\label{class_r_n_n___genome_aca040bbc38324fd184f0724a4b3329ad}} 
+void {\bfseries initialize\+\_\+randomly} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a2285acbea30208b94f25ddf875d7d33d}\label{class_r_n_n___genome_a2285acbea30208b94f25ddf875d7d33d}} 
+void {\bfseries initialize\+\_\+xavier} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a5d58f36743bcab8e9725b885b8624d48}\label{class_r_n_n___genome_a5d58f36743bcab8e9725b885b8624d48}} 
+void {\bfseries initialize\+\_\+kaiming} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a1c2040aefaa09768a16f251204b1a6df}\label{class_r_n_n___genome_a1c2040aefaa09768a16f251204b1a6df}} 
+void {\bfseries initialize\+\_\+node\+\_\+randomly} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a7f6cad5cec08a70b5b390fecf21a5709}\label{class_r_n_n___genome_a7f6cad5cec08a70b5b390fecf21a5709}} 
+double {\bfseries get\+\_\+xavier\+\_\+weight} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$output\+\_\+node)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_abdcc66772dcfa732d3d41768e35a3577}\label{class_r_n_n___genome_abdcc66772dcfa732d3d41768e35a3577}} 
+double {\bfseries get\+\_\+kaiming\+\_\+weight} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$output\+\_\+node)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ab1c4a73021355e3708bf47737c19d9fb}\label{class_r_n_n___genome_ab1c4a73021355e3708bf47737c19d9fb}} 
+double {\bfseries get\+\_\+random\+\_\+weight} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a96f02ce73d4cd74032bfec4a4d72d934}\label{class_r_n_n___genome_a96f02ce73d4cd74032bfec4a4d72d934}} 
+void {\bfseries get\+\_\+input\+\_\+edges} (int32\+\_\+t node\+\_\+innovation, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ $>$ \&input\+\_\+edges, \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$ $>$ \&input\+\_\+recurrent\+\_\+edges)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa80dc56239fcd560a6ddff4eec4508a3}\label{class_r_n_n___genome_aa80dc56239fcd560a6ddff4eec4508a3}} 
+int32\+\_\+t {\bfseries get\+\_\+fan\+\_\+in} (int32\+\_\+t node\+\_\+innovation)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a2b0ad83b8a7f9a8528cec1ec7f48a8d5}\label{class_r_n_n___genome_a2b0ad83b8a7f9a8528cec1ec7f48a8d5}} 
+int32\+\_\+t {\bfseries get\+\_\+fan\+\_\+out} (int32\+\_\+t node\+\_\+innovation)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a6919035ccf8aaf070cfb996ac990fc59}\label{class_r_n_n___genome_a6919035ccf8aaf070cfb996ac990fc59}} 
+int32\+\_\+t {\bfseries get\+\_\+generation\+\_\+id} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a5c9ba154bc5cfa107c9a2c3f0799cf2f}\label{class_r_n_n___genome_a5c9ba154bc5cfa107c9a2c3f0799cf2f}} 
+void {\bfseries set\+\_\+generation\+\_\+id} (int32\+\_\+t generation\+\_\+id)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_adb150f05ee96d379d628fa46d44fd0af}\label{class_r_n_n___genome_adb150f05ee96d379d628fa46d44fd0af}} 
+void {\bfseries clear\+\_\+generated\+\_\+by} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_abaceca4d87f395f4fe59d82fe3511620}\label{class_r_n_n___genome_abaceca4d87f395f4fe59d82fe3511620}} 
+void {\bfseries update\+\_\+generation\+\_\+map} (\textbf{ map}$<$ \textbf{ string}, int32\+\_\+t $>$ \&generation\+\_\+map)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a985a920952e94a3181acfb2fb45d6a97}\label{class_r_n_n___genome_a985a920952e94a3181acfb2fb45d6a97}} 
+void {\bfseries set\+\_\+generated\+\_\+by} (\textbf{ string} type)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_abf78eb6d242054e5feb470a1a7a90e32}\label{class_r_n_n___genome_abf78eb6d242054e5feb470a1a7a90e32}} 
+int32\+\_\+t {\bfseries get\+\_\+generated\+\_\+by} (\textbf{ string} type)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a3400cc5dc992928c82c26822165cb819}\label{class_r_n_n___genome_a3400cc5dc992928c82c26822165cb819}} 
+\mbox{\hyperlink{class_r_n_n}{R\+NN}} $\ast$ {\bfseries get\+\_\+rnn} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a1789575964a2fa2d4264a50932c5c025}\label{class_r_n_n___genome_a1789575964a2fa2d4264a50932c5c025}} 
+\textbf{ vector}$<$ double $>$ {\bfseries get\+\_\+best\+\_\+parameters} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aaaea6e2b199d43a19cb21e83858dde19}\label{class_r_n_n___genome_aaaea6e2b199d43a19cb21e83858dde19}} 
+void {\bfseries set\+\_\+best\+\_\+parameters} (\textbf{ vector}$<$ double $>$ parameters)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa7f1bef460f6fde273acf43f125280aa}\label{class_r_n_n___genome_aa7f1bef460f6fde273acf43f125280aa}} 
+void {\bfseries set\+\_\+initial\+\_\+parameters} (\textbf{ vector}$<$ double $>$ parameters)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aed3f4217cedde954a2adca8eb4d96d33}\label{class_r_n_n___genome_aed3f4217cedde954a2adca8eb4d96d33}} 
+void {\bfseries get\+\_\+analytic\+\_\+gradient} (\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n}{R\+NN}} $\ast$ $>$ \&rnns, const \textbf{ vector}$<$ double $>$ \&parameters, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs, double \&mse, \textbf{ vector}$<$ double $>$ \&analytic\+\_\+gradient, bool training)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a1bc7f521895ce6f4435409711d60cffa}\label{class_r_n_n___genome_a1bc7f521895ce6f4435409711d60cffa}} 
+void {\bfseries backpropagate} (const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&validation\+\_\+inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&validation\+\_\+outputs)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a64bf3531936724db69102d78aa72abda}\label{class_r_n_n___genome_a64bf3531936724db69102d78aa72abda}} 
+void {\bfseries backpropagate\+\_\+stochastic} (const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&validation\+\_\+inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&validation\+\_\+outputs)
+\item 
+double \mbox{\hyperlink{class_r_n_n___genome_a8f267b82d174d4a10bd48049e025a99b}{get\+\_\+softmax}} (const \textbf{ vector}$<$ double $>$ \&parameters, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\begin{DoxyCompactList}\small\item\em Predicts the softmax error after a single pass across the rnn genome. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ad03562bf5b84189749b619ade77423b2}\label{class_r_n_n___genome_ad03562bf5b84189749b619ade77423b2}} 
+double {\bfseries get\+\_\+mse} (const \textbf{ vector}$<$ double $>$ \&parameters, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a2aea775ce9deb36424b5fa11e6f028f6}\label{class_r_n_n___genome_a2aea775ce9deb36424b5fa11e6f028f6}} 
+double {\bfseries get\+\_\+mae} (const \textbf{ vector}$<$ double $>$ \&parameters, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ab9fa1bd698b3849785ecb75735f76700}\label{class_r_n_n___genome_ab9fa1bd698b3849785ecb75735f76700}} 
+\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ {\bfseries get\+\_\+predictions} (const \textbf{ vector}$<$ double $>$ \&parameters, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a0456c6b90b2ea7d56727f9319880b751}\label{class_r_n_n___genome_a0456c6b90b2ea7d56727f9319880b751}} 
+void {\bfseries write\+\_\+predictions} (\textbf{ string} output\+\_\+directory, const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+filenames, const \textbf{ vector}$<$ double $>$ \&parameters, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs, \mbox{\hyperlink{class_time_series_sets}{Time\+Series\+Sets}} $\ast$time\+\_\+series\+\_\+sets)
+\item 
+void \mbox{\hyperlink{class_r_n_n___genome_a99769540d03c292a1e63bd753ae58ceb}{write\+\_\+predictions}} (\textbf{ string} output\+\_\+directory, const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+filenames, const \textbf{ vector}$<$ double $>$ \&parameters, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs, \mbox{\hyperlink{class_corpus}{Corpus}} $\ast$word\+\_\+series\+\_\+sets)
+\begin{DoxyCompactList}\small\item\em Predicts the cross entropy loss after a single pass across the rnn genome. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a4529fe0bbd50b47ff71cd0ac92e6724f}\label{class_r_n_n___genome_a4529fe0bbd50b47ff71cd0ac92e6724f}} 
+void {\bfseries get\+\_\+mu\+\_\+sigma} (const \textbf{ vector}$<$ double $>$ \&p, double \&mu, double \&sigma)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a42f17b1f58cfdcee8ca24211edc7b1d3}\label{class_r_n_n___genome_a42f17b1f58cfdcee8ca24211edc7b1d3}} 
+bool {\bfseries sanity\+\_\+check} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a7c75aa2e12aba2b589aa5a6eb18f306f}\label{class_r_n_n___genome_a7c75aa2e12aba2b589aa5a6eb18f306f}} 
+void {\bfseries assign\+\_\+reachability} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a6ee3f18c2865772de6c825db034b999d}\label{class_r_n_n___genome_a6ee3f18c2865772de6c825db034b999d}} 
+bool {\bfseries outputs\+\_\+unreachable} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af0e46a5c28b25f7584b6aa2c9728837b}\label{class_r_n_n___genome_af0e46a5c28b25f7584b6aa2c9728837b}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries create\+\_\+node} (double mu, double sigma, int node\+\_\+type, int32\+\_\+t \&node\+\_\+innovation\+\_\+count, double depth)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af2630750a56148d4fa66029a6f2fc897}\label{class_r_n_n___genome_af2630750a56148d4fa66029a6f2fc897}} 
+bool {\bfseries attempt\+\_\+edge\+\_\+insert} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n2, double mu, double sigma, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa8813813b650d6ef902cc5424173fff3}\label{class_r_n_n___genome_aa8813813b650d6ef902cc5424173fff3}} 
+bool {\bfseries attempt\+\_\+recurrent\+\_\+edge\+\_\+insert} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n2, double mu, double sigma, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a0f6d4c8731ad48d7567f96ffb7d2daff}\label{class_r_n_n___genome_a0f6d4c8731ad48d7567f96ffb7d2daff}} 
+void {\bfseries generate\+\_\+recurrent\+\_\+edges} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$node, double mu, double sigma, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a3633b14fd8c998addc4fadc024b49a4a}\label{class_r_n_n___genome_a3633b14fd8c998addc4fadc024b49a4a}} 
+bool {\bfseries add\+\_\+edge} (double mu, double sigma, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_adef568d6f4a9a7664da6e9a69e6815d5}\label{class_r_n_n___genome_adef568d6f4a9a7664da6e9a69e6815d5}} 
+bool {\bfseries add\+\_\+recurrent\+\_\+edge} (double mu, double sigma, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ rec\+\_\+depth\+\_\+dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a929f90bb0a514ce39df0df2b49b9ecb3}\label{class_r_n_n___genome_a929f90bb0a514ce39df0df2b49b9ecb3}} 
+bool {\bfseries disable\+\_\+edge} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a8750e34101cb7b11adc5e46fabbb1520}\label{class_r_n_n___genome_a8750e34101cb7b11adc5e46fabbb1520}} 
+bool {\bfseries enable\+\_\+edge} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_afb77ce59b60841c105d590cece8fd0a0}\label{class_r_n_n___genome_afb77ce59b60841c105d590cece8fd0a0}} 
+bool {\bfseries split\+\_\+edge} (double mu, double sigma, int node\+\_\+type, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ rec\+\_\+depth\+\_\+dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count, int32\+\_\+t \&node\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a1bc4c4a51f7363ba84263ff8b7d7e60c}\label{class_r_n_n___genome_a1bc4c4a51f7363ba84263ff8b7d7e60c}} 
+bool {\bfseries add\+\_\+node} (double mu, double sigma, int node\+\_\+type, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count, int32\+\_\+t \&node\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a124000a36ef379d275973d1455bebd47}\label{class_r_n_n___genome_a124000a36ef379d275973d1455bebd47}} 
+bool {\bfseries enable\+\_\+node} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af6f3e5fd54576d21bd39694c92df5a51}\label{class_r_n_n___genome_af6f3e5fd54576d21bd39694c92df5a51}} 
+bool {\bfseries disable\+\_\+node} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_afe24d50cba6c6f0e97ff3a219acdbe60}\label{class_r_n_n___genome_afe24d50cba6c6f0e97ff3a219acdbe60}} 
+bool {\bfseries split\+\_\+node} (double mu, double sigma, int node\+\_\+type, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count, int32\+\_\+t \&node\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a1cfdbee9da6d350572e6115ede269e1e}\label{class_r_n_n___genome_a1cfdbee9da6d350572e6115ede269e1e}} 
+bool {\bfseries merge\+\_\+node} (double mu, double sigma, int node\+\_\+type, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count, int32\+\_\+t \&node\+\_\+innovation\+\_\+count)
+\item 
+bool \mbox{\hyperlink{class_r_n_n___genome_a8d67b0d3f328bfc4a8dd459a61fb1cf3}{has\+\_\+node\+\_\+with\+\_\+innovation}} (int32\+\_\+t innovation\+\_\+number) const
+\begin{DoxyCompactList}\small\item\em Determines if the genome contains a node with the given innovation number. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a21e4ae94483c013b626183c424541a34}\label{class_r_n_n___genome_a21e4ae94483c013b626183c424541a34}} 
+bool {\bfseries equals} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$other)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a04c8b0b81e476408f02a946aac21da0e}\label{class_r_n_n___genome_a04c8b0b81e476408f02a946aac21da0e}} 
+\textbf{ string} {\bfseries get\+\_\+color} (double weight, bool is\+\_\+recurrent)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af3bd77a6fa56241a0fdedf97b17be99f}\label{class_r_n_n___genome_af3bd77a6fa56241a0fdedf97b17be99f}} 
+void {\bfseries write\+\_\+graphviz} (\textbf{ string} filename)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a8871a0dfe94d75aa4648b820ff54692c}\label{class_r_n_n___genome_a8871a0dfe94d75aa4648b820ff54692c}} 
+{\bfseries R\+N\+N\+\_\+\+Genome} (\textbf{ string} binary\+\_\+filename)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a258321d0827f4352de07e335b7f9de09}\label{class_r_n_n___genome_a258321d0827f4352de07e335b7f9de09}} 
+{\bfseries R\+N\+N\+\_\+\+Genome} (char $\ast$array, int32\+\_\+t length)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ad57685db52aae8760788c963d2e78c2f}\label{class_r_n_n___genome_ad57685db52aae8760788c963d2e78c2f}} 
+{\bfseries R\+N\+N\+\_\+\+Genome} (\textbf{ istream} \&bin\+\_\+infile)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ad81f903f12f95c48b9bf26497d5e69fa}\label{class_r_n_n___genome_ad81f903f12f95c48b9bf26497d5e69fa}} 
+void {\bfseries read\+\_\+from\+\_\+array} (char $\ast$array, int32\+\_\+t length)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a7711076fea5f12a33ce6acbbb34efdf1}\label{class_r_n_n___genome_a7711076fea5f12a33ce6acbbb34efdf1}} 
+void {\bfseries read\+\_\+from\+\_\+stream} (\textbf{ istream} \&bin\+\_\+istream)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a5c2f9a4d8a0fda974b0016290cd8de64}\label{class_r_n_n___genome_a5c2f9a4d8a0fda974b0016290cd8de64}} 
+void {\bfseries write\+\_\+to\+\_\+array} (char $\ast$$\ast$array, int32\+\_\+t \&length)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aaef90bb253e56822e7d04835b1b5e504}\label{class_r_n_n___genome_aaef90bb253e56822e7d04835b1b5e504}} 
+void {\bfseries write\+\_\+to\+\_\+file} (\textbf{ string} bin\+\_\+filename)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa6fe50829e2dddded98d19bb3e5a309f}\label{class_r_n_n___genome_aa6fe50829e2dddded98d19bb3e5a309f}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&bin\+\_\+stream)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a6ec88463918000224f75af7e5052bf75}\label{class_r_n_n___genome_a6ec88463918000224f75af7e5052bf75}} 
+bool {\bfseries connect\+\_\+new\+\_\+input\+\_\+node} (double mu, double sig, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$new\+\_\+node, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ac299924fe6cd871caeb39425690d94de}\label{class_r_n_n___genome_ac299924fe6cd871caeb39425690d94de}} 
+bool {\bfseries connect\+\_\+new\+\_\+output\+\_\+node} (double mu, double sig, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$new\+\_\+node, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af367aa062f8c1cabcae2610cb9b729c4}\label{class_r_n_n___genome_af367aa062f8c1cabcae2610cb9b729c4}} 
+bool {\bfseries connect\+\_\+node\+\_\+to\+\_\+hid\+\_\+nodes} (double mu, double sig, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$new\+\_\+node, \textbf{ uniform\+\_\+int\+\_\+distribution}$<$ int32\+\_\+t $>$ dist, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count, bool from\+\_\+input)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ab3ee5993d83d8332395a833868193626}\label{class_r_n_n___genome_ab3ee5993d83d8332395a833868193626}} 
+void {\bfseries update\+\_\+innovation\+\_\+counts} (int32\+\_\+t \&node\+\_\+innovation\+\_\+count, int32\+\_\+t \&edge\+\_\+innovation\+\_\+count)
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a42e6139dcd340607495e71392659c26b}\label{class_r_n_n___genome_a42e6139dcd340607495e71392659c26b}} 
+\textbf{ vector}$<$ int32\+\_\+t $>$ {\bfseries get\+\_\+innovation\+\_\+list} ()
+\item 
+\textbf{ string} \mbox{\hyperlink{class_r_n_n___genome_a280b5a80c457fd341fe82ec9cc930d01}{get\+\_\+structural\+\_\+hash}} () const
+\item 
+int \mbox{\hyperlink{class_r_n_n___genome_ae504f790ddce6366e49a4892b86e12cb}{get\+\_\+max\+\_\+node\+\_\+innovation\+\_\+count}} ()
+\item 
+int \mbox{\hyperlink{class_r_n_n___genome_aaffc30ae458b6dcf16a0e7484ca7bcfc}{get\+\_\+max\+\_\+edge\+\_\+innovation\+\_\+count}} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a0501aac0dd58912ff2ec0b52f0da01c4}\label{class_r_n_n___genome_a0501aac0dd58912ff2ec0b52f0da01c4}} 
+void {\bfseries transfer\+\_\+to} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&new\+\_\+input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&new\+\_\+output\+\_\+parameter\+\_\+names, \textbf{ string} transfer\+\_\+learning\+\_\+version, bool epigenetic\+\_\+weights, int32\+\_\+t min\+\_\+recurrent\+\_\+depth, int32\+\_\+t max\+\_\+recurrent\+\_\+depth)
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a6c4a5f09e4512e3baa0980e9163e91b7}\label{class_r_n_n___genome_a6c4a5f09e4512e3baa0980e9163e91b7}} 
+static \textbf{ string} {\bfseries print\+\_\+statistics\+\_\+header} ()
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ac0f39f060efc10708b62daf97cff19eb}\label{class_r_n_n___genome_ac0f39f060efc10708b62daf97cff19eb}} 
+int32\+\_\+t {\bfseries generation\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ac5cf0908399122afd146d2af5bd97523}\label{class_r_n_n___genome_ac5cf0908399122afd146d2af5bd97523}} 
+int32\+\_\+t {\bfseries group\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a549d5a47dd9707afecb51d108bc46890}\label{class_r_n_n___genome_a549d5a47dd9707afecb51d108bc46890}} 
+int32\+\_\+t {\bfseries bp\+\_\+iterations}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a28ca3b990df56545d00e9d6f206ecf25}\label{class_r_n_n___genome_a28ca3b990df56545d00e9d6f206ecf25}} 
+double {\bfseries learning\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ab132530c91cb6b47327aab23d6d3a623}\label{class_r_n_n___genome_ab132530c91cb6b47327aab23d6d3a623}} 
+bool {\bfseries adapt\+\_\+learning\+\_\+rate}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af71ce9896e3ec8eb6810be6b130aa587}\label{class_r_n_n___genome_af71ce9896e3ec8eb6810be6b130aa587}} 
+bool {\bfseries use\+\_\+nesterov\+\_\+momentum}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aed3fd4319fe285048b03c5030ac876b8}\label{class_r_n_n___genome_aed3fd4319fe285048b03c5030ac876b8}} 
+bool {\bfseries use\+\_\+reset\+\_\+weights}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a87efb2d019061b1f19bd9041eb58a0e7}\label{class_r_n_n___genome_a87efb2d019061b1f19bd9041eb58a0e7}} 
+bool {\bfseries use\+\_\+high\+\_\+norm}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a9991701d9cf37d0aee5bd7afdc89d79d}\label{class_r_n_n___genome_a9991701d9cf37d0aee5bd7afdc89d79d}} 
+double {\bfseries high\+\_\+threshold}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa9d5bc09716c8cb2dc514ef33b67280e}\label{class_r_n_n___genome_aa9d5bc09716c8cb2dc514ef33b67280e}} 
+bool {\bfseries use\+\_\+low\+\_\+norm}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a6e0428ab9fb0a3f797ce0de996bbb554}\label{class_r_n_n___genome_a6e0428ab9fb0a3f797ce0de996bbb554}} 
+double {\bfseries low\+\_\+threshold}
+\item 
+bool \mbox{\hyperlink{class_r_n_n___genome_a32113888aee78f2b95490a5289f47a44}{use\+\_\+regression}}
+\begin{DoxyCompactList}\small\item\em Specifies whether to use the regression or not. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a982bd358ebf49ec05960b1839f8d2095}\label{class_r_n_n___genome_a982bd358ebf49ec05960b1839f8d2095}} 
+bool {\bfseries use\+\_\+dropout}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a23ef058698f4d91d0d4372ddd2f3156c}\label{class_r_n_n___genome_a23ef058698f4d91d0d4372ddd2f3156c}} 
+double {\bfseries dropout\+\_\+probability}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a4ead06dcfb48733f762b66a107ddf745}\label{class_r_n_n___genome_a4ead06dcfb48733f762b66a107ddf745}} 
+\textbf{ string} {\bfseries structural\+\_\+hash}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a10aa7b56e9bd83a6b31576693b53d484}\label{class_r_n_n___genome_a10aa7b56e9bd83a6b31576693b53d484}} 
+\textbf{ string} {\bfseries log\+\_\+filename}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a2bc298962160c8ddb3595b53bc087d27}\label{class_r_n_n___genome_a2bc298962160c8ddb3595b53bc087d27}} 
+Weight\+Type {\bfseries weight\+\_\+initialize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a6b864f03e265778d56e759db893254dc}\label{class_r_n_n___genome_a6b864f03e265778d56e759db893254dc}} 
+Weight\+Type {\bfseries weight\+\_\+inheritance}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a84c977813cf1a038ad8c76ae05d39621}\label{class_r_n_n___genome_a84c977813cf1a038ad8c76ae05d39621}} 
+Weight\+Type {\bfseries mutated\+\_\+component\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ab2f1e6748763704716c1aaa3856d5147}\label{class_r_n_n___genome_ab2f1e6748763704716c1aaa3856d5147}} 
+\textbf{ map}$<$ \textbf{ string}, int $>$ {\bfseries generated\+\_\+by\+\_\+map}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a2b2695cd1b529cbd42eda2cc9a89bec9}\label{class_r_n_n___genome_a2b2695cd1b529cbd42eda2cc9a89bec9}} 
+\textbf{ vector}$<$ double $>$ {\bfseries initial\+\_\+parameters}
+\item 
+double \mbox{\hyperlink{class_r_n_n___genome_a41ba624f5a9311ee8ef0803ae6063156}{best\+\_\+validation\+\_\+mse}}
+\begin{DoxyCompactList}\small\item\em Specifies the validation error across the dataset. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa0ebdcc59036fb56c0b0e38df798a8ef}\label{class_r_n_n___genome_aa0ebdcc59036fb56c0b0e38df798a8ef}} 
+double {\bfseries best\+\_\+validation\+\_\+mae}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_ab95f6fdfca08416ae9d71e9a52e0fa3d}\label{class_r_n_n___genome_ab95f6fdfca08416ae9d71e9a52e0fa3d}} 
+\textbf{ vector}$<$ double $>$ {\bfseries best\+\_\+parameters}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a4a5dca851f01b965be380ffbcdc33b57}\label{class_r_n_n___genome_a4a5dca851f01b965be380ffbcdc33b57}} 
+\textbf{ minstd\+\_\+rand0} {\bfseries generator}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a0ab32e35e17e2e6660d8444053ec9f77}\label{class_r_n_n___genome_a0ab32e35e17e2e6660d8444053ec9f77}} 
+\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ {\bfseries rng}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a9c65ce48c124c3be69034ce65f3a80a0}\label{class_r_n_n___genome_a9c65ce48c124c3be69034ce65f3a80a0}} 
+\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ {\bfseries rng\+\_\+0\+\_\+1}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_add22d35c49c6c3809fa0f57571d93f00}\label{class_r_n_n___genome_add22d35c49c6c3809fa0f57571d93f00}} 
+\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ {\bfseries rng\+\_\+1\+\_\+1}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aefae807922ef9ca63672881492a0332d}\label{class_r_n_n___genome_aefae807922ef9ca63672881492a0332d}} 
+\mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} {\bfseries normal\+\_\+distribution}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aab8bf323d2d3f9505381fcfe5b34dc91}\label{class_r_n_n___genome_aab8bf323d2d3f9505381fcfe5b34dc91}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ {\bfseries nodes}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a053474b0df28940abe6d23933e48520e}\label{class_r_n_n___genome_a053474b0df28940abe6d23933e48520e}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$ $>$ {\bfseries edges}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a114b967983487743d10288134cc22ae8}\label{class_r_n_n___genome_a114b967983487743d10288134cc22ae8}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$ $>$ {\bfseries recurrent\+\_\+edges}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a0aa86f627d6ada55fc7585c906d70bb1}\label{class_r_n_n___genome_a0aa86f627d6ada55fc7585c906d70bb1}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries input\+\_\+parameter\+\_\+names}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_af8e2a4c13f37159471e6742bbd090bc6}\label{class_r_n_n___genome_af8e2a4c13f37159471e6742bbd090bc6}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries output\+\_\+parameter\+\_\+names}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_afb2145baf4921ad48c5e3cc983eff260}\label{class_r_n_n___genome_afb2145baf4921ad48c5e3cc983eff260}} 
+\textbf{ string} {\bfseries normalize\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a95c8f89b1073ebf4112f90c1bb5ee946}\label{class_r_n_n___genome_a95c8f89b1073ebf4112f90c1bb5ee946}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+mins}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa0977c75168c3d09504ed333cc8784e7}\label{class_r_n_n___genome_aa0977c75168c3d09504ed333cc8784e7}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+maxs}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a408454997cceaff6039b08a069d9b42e}\label{class_r_n_n___genome_a408454997cceaff6039b08a069d9b42e}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+avgs}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a2e24e77171f6853be24f2e488fefc04b}\label{class_r_n_n___genome_a2e24e77171f6853be24f2e488fefc04b}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+std\+\_\+devs}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_a7850c8d4e61c10934acf1a9a98347cf3}\label{class_r_n_n___genome_a7850c8d4e61c10934acf1a9a98347cf3}} 
+class {\bfseries E\+X\+A\+MM}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aec7752aa97db7b461eca0d28865aff20}\label{class_r_n_n___genome_aec7752aa97db7b461eca0d28865aff20}} 
+class {\bfseries Island\+Speciation\+Strategy}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_afde0239d25f6ec4aac551d7b6eaf5bc3}\label{class_r_n_n___genome_afde0239d25f6ec4aac551d7b6eaf5bc3}} 
+class {\bfseries Neat\+Speciation\+Strategy}
+\item 
+\mbox{\Hypertarget{class_r_n_n___genome_aa1d85c88a38f21ffb0ccedd474289b0e}\label{class_r_n_n___genome_aa1d85c88a38f21ffb0ccedd474289b0e}} 
+class {\bfseries Rec\+Depth\+Frequency\+Table}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_r_n_n___genome_a38239d73966179c24fc12254810b31ad}\label{class_r_n_n___genome_a38239d73966179c24fc12254810b31ad}} 
+\index{RNN\_Genome@{RNN\_Genome}!get\_fitness@{get\_fitness}}
+\index{get\_fitness@{get\_fitness}!RNN\_Genome@{RNN\_Genome}}
+\doxysubsubsection{\texorpdfstring{get\_fitness()}{get\_fitness()}}
+{\footnotesize\ttfamily double R\+N\+N\+\_\+\+Genome\+::get\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const}
+
+
+
+Calculates the fitness of the rnn genome across the dataset. 
+
+~\newline
+ This will be the mean squared error in case of regression and cross entropy loss in case of classification.
+
+\begin{DoxyReturn}{Returns}
+M\+SE or S\+O\+F\+T\+M\+AX E\+R\+R\+OR. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_r_n_n___genome_aaffc30ae458b6dcf16a0e7484ca7bcfc}\label{class_r_n_n___genome_aaffc30ae458b6dcf16a0e7484ca7bcfc}} 
+\index{RNN\_Genome@{RNN\_Genome}!get\_max\_edge\_innovation\_count@{get\_max\_edge\_innovation\_count}}
+\index{get\_max\_edge\_innovation\_count@{get\_max\_edge\_innovation\_count}!RNN\_Genome@{RNN\_Genome}}
+\doxysubsubsection{\texorpdfstring{get\_max\_edge\_innovation\_count()}{get\_max\_edge\_innovation\_count()}}
+{\footnotesize\ttfamily int R\+N\+N\+\_\+\+Genome\+::get\+\_\+max\+\_\+edge\+\_\+innovation\+\_\+count (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+\begin{DoxyReturn}{Returns}
+the max innovation number of any edge or recurrent edge in the genome. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_r_n_n___genome_ae504f790ddce6366e49a4892b86e12cb}\label{class_r_n_n___genome_ae504f790ddce6366e49a4892b86e12cb}} 
+\index{RNN\_Genome@{RNN\_Genome}!get\_max\_node\_innovation\_count@{get\_max\_node\_innovation\_count}}
+\index{get\_max\_node\_innovation\_count@{get\_max\_node\_innovation\_count}!RNN\_Genome@{RNN\_Genome}}
+\doxysubsubsection{\texorpdfstring{get\_max\_node\_innovation\_count()}{get\_max\_node\_innovation\_count()}}
+{\footnotesize\ttfamily int R\+N\+N\+\_\+\+Genome\+::get\+\_\+max\+\_\+node\+\_\+innovation\+\_\+count (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+\begin{DoxyReturn}{Returns}
+the max innovation number of any node in the genome. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_r_n_n___genome_a8f267b82d174d4a10bd48049e025a99b}\label{class_r_n_n___genome_a8f267b82d174d4a10bd48049e025a99b}} 
+\index{RNN\_Genome@{RNN\_Genome}!get\_softmax@{get\_softmax}}
+\index{get\_softmax@{get\_softmax}!RNN\_Genome@{RNN\_Genome}}
+\doxysubsubsection{\texorpdfstring{get\_softmax()}{get\_softmax()}}
+{\footnotesize\ttfamily double R\+N\+N\+\_\+\+Genome\+::get\+\_\+softmax (\begin{DoxyParamCaption}\item[{const \textbf{ vector}$<$ double $>$ \&}]{parameters,  }\item[{const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&}]{inputs,  }\item[{const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&}]{outputs }\end{DoxyParamCaption})}
+
+
+
+Predicts the softmax error after a single pass across the rnn genome. 
+
+~\newline
+
+
+
+\begin{DoxyParams}{Parameters}
+{\em parameters} & is the parameters such as dropout, momentum type used for the forward pass. \\
+\hline
+{\em inputs} & are the inputs according to the dataset that is pass to the for forward pass. \\
+\hline
+{\em outputs} & are the expected outputs according to the dataset that is pass to the calculate error for backward pass.\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+average of the cross entropy error over the dataset. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_r_n_n___genome_a280b5a80c457fd341fe82ec9cc930d01}\label{class_r_n_n___genome_a280b5a80c457fd341fe82ec9cc930d01}} 
+\index{RNN\_Genome@{RNN\_Genome}!get\_structural\_hash@{get\_structural\_hash}}
+\index{get\_structural\_hash@{get\_structural\_hash}!RNN\_Genome@{RNN\_Genome}}
+\doxysubsubsection{\texorpdfstring{get\_structural\_hash()}{get\_structural\_hash()}}
+{\footnotesize\ttfamily \textbf{ string} R\+N\+N\+\_\+\+Genome\+::get\+\_\+structural\+\_\+hash (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const}
+
+\begin{DoxyReturn}{Returns}
+the structural hash (calculated when assign\+\_\+reachaability is called) 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_r_n_n___genome_a8d67b0d3f328bfc4a8dd459a61fb1cf3}\label{class_r_n_n___genome_a8d67b0d3f328bfc4a8dd459a61fb1cf3}} 
+\index{RNN\_Genome@{RNN\_Genome}!has\_node\_with\_innovation@{has\_node\_with\_innovation}}
+\index{has\_node\_with\_innovation@{has\_node\_with\_innovation}!RNN\_Genome@{RNN\_Genome}}
+\doxysubsubsection{\texorpdfstring{has\_node\_with\_innovation()}{has\_node\_with\_innovation()}}
+{\footnotesize\ttfamily bool R\+N\+N\+\_\+\+Genome\+::has\+\_\+node\+\_\+with\+\_\+innovation (\begin{DoxyParamCaption}\item[{int32\+\_\+t}]{innovation\+\_\+number }\end{DoxyParamCaption}) const}
+
+
+
+Determines if the genome contains a node with the given innovation number. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em the} & innovation number to fine\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+true if the genome has a node with the provided innovation number, false otherwise. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_r_n_n___genome_a99769540d03c292a1e63bd753ae58ceb}\label{class_r_n_n___genome_a99769540d03c292a1e63bd753ae58ceb}} 
+\index{RNN\_Genome@{RNN\_Genome}!write\_predictions@{write\_predictions}}
+\index{write\_predictions@{write\_predictions}!RNN\_Genome@{RNN\_Genome}}
+\doxysubsubsection{\texorpdfstring{write\_predictions()}{write\_predictions()}}
+{\footnotesize\ttfamily void R\+N\+N\+\_\+\+Genome\+::write\+\_\+predictions (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{output\+\_\+directory,  }\item[{const \textbf{ vector}$<$ \textbf{ string} $>$ \&}]{input\+\_\+filenames,  }\item[{const \textbf{ vector}$<$ double $>$ \&}]{parameters,  }\item[{const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&}]{inputs,  }\item[{const \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&}]{outputs,  }\item[{\mbox{\hyperlink{class_corpus}{Corpus}} $\ast$}]{word\+\_\+series\+\_\+sets }\end{DoxyParamCaption})}
+
+
+
+Predicts the cross entropy loss after a single pass across the rnn genome. 
+
+~\newline
+
+
+
+\begin{DoxyParams}{Parameters}
+{\em output\+\_\+directory} & is the file directory that contains all the output files. \\
+\hline
+{\em inputs\+\_\+filenames} & are the inputs files according to the dataset that is pass to the for forward pass. \\
+\hline
+{\em inputs} & are the inputs according to the dataset that is pass to the for forward pass. ~\newline
+ \\
+\hline
+{\em outputs} & are the expected outputs according to the dataset that is pass to the calculate error for backward pass. \\
+\hline
+{\em parameters} & is the parameters such as dropout, momentum type used for the forward pass. \\
+\hline
+{\em word\+\_\+series\+\_\+sets} & is the \mbox{\hyperlink{class_corpus}{Corpus}} from the word series dataset.\\
+\hline
+\end{DoxyParams}
+Calls the write predictions from the rnn class. ~\newline
+ 
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_r_n_n___genome_a41ba624f5a9311ee8ef0803ae6063156}\label{class_r_n_n___genome_a41ba624f5a9311ee8ef0803ae6063156}} 
+\index{RNN\_Genome@{RNN\_Genome}!best\_validation\_mse@{best\_validation\_mse}}
+\index{best\_validation\_mse@{best\_validation\_mse}!RNN\_Genome@{RNN\_Genome}}
+\doxysubsubsection{\texorpdfstring{best\_validation\_mse}{best\_validation\_mse}}
+{\footnotesize\ttfamily double R\+N\+N\+\_\+\+Genome\+::best\+\_\+validation\+\_\+mse\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies the validation error across the dataset. 
+
+~\newline
+ It will use mean squared error when regression in case of time series and cross entropy loss when regression not used in case of word series \mbox{\Hypertarget{class_r_n_n___genome_a32113888aee78f2b95490a5289f47a44}\label{class_r_n_n___genome_a32113888aee78f2b95490a5289f47a44}} 
+\index{RNN\_Genome@{RNN\_Genome}!use\_regression@{use\_regression}}
+\index{use\_regression@{use\_regression}!RNN\_Genome@{RNN\_Genome}}
+\doxysubsubsection{\texorpdfstring{use\_regression}{use\_regression}}
+{\footnotesize\ttfamily bool R\+N\+N\+\_\+\+Genome\+::use\+\_\+regression\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies whether to use the regression or not. 
+
+~\newline
+ It will use regression in case of time series and will not use regression in case of word series 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+genome.\+hxx\item 
+rnn/rnn\+\_\+genome.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_r_n_n___node.eps b/docs/latex/class_r_n_n___node.eps
new file mode 100644
index 00000000..e012d429
--- /dev/null
+++ b/docs/latex/class_r_n_n___node.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
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diff --git a/docs/latex/class_r_n_n___node.tex b/docs/latex/class_r_n_n___node.tex
new file mode 100644
index 00000000..fd928eee
--- /dev/null
+++ b/docs/latex/class_r_n_n___node.tex
@@ -0,0 +1,93 @@
+\hypertarget{class_r_n_n___node}{}\doxysection{R\+N\+N\+\_\+\+Node Class Reference}
+\label{class_r_n_n___node}\index{RNN\_Node@{RNN\_Node}}
+Inheritance diagram for R\+N\+N\+\_\+\+Node\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_r_n_n___node}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a02f17cf2588bda29b9dc48bc963a82f8}\label{class_r_n_n___node_a02f17cf2588bda29b9dc48bc963a82f8}} 
+{\bfseries R\+N\+N\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+layer\+\_\+type, double \+\_\+depth, int \+\_\+node\+\_\+type)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a3b9ceb06fe24c27175e51eb844981aeb}\label{class_r_n_n___node_a3b9ceb06fe24c27175e51eb844981aeb}} 
+{\bfseries R\+N\+N\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+layer\+\_\+type, double \+\_\+depth, int \+\_\+node\+\_\+type, \textbf{ string} \+\_\+parameter\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a1f51482502ea3a9d60398e9118664cc7}\label{class_r_n_n___node_a1f51482502ea3a9d60398e9118664cc7}} 
+void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_aeb4837a7203200646cca4292bf162651}\label{class_r_n_n___node_aeb4837a7203200646cca4292bf162651}} 
+void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng1\+\_\+1, double range)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_af9918b6e717a2fa6123a94a3af730ea3}\label{class_r_n_n___node_af9918b6e717a2fa6123a94a3af730ea3}} 
+void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_aadea7251fb3737601dd54fced64c4493}\label{class_r_n_n___node_aadea7251fb3737601dd54fced64c4493}} 
+void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a86910e07f7ea5b5f4e2623ef3c3c98c3}\label{class_r_n_n___node_a86910e07f7ea5b5f4e2623ef3c3c98c3}} 
+void {\bfseries input\+\_\+fired} (int time, double incoming\+\_\+output)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a1c98a7abaf87ab32c938a1e24f2b01ca}\label{class_r_n_n___node_a1c98a7abaf87ab32c938a1e24f2b01ca}} 
+void {\bfseries try\+\_\+update\+\_\+deltas} (int time)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a29c50ad9a3f633b06428d9db93b64ae8}\label{class_r_n_n___node_a29c50ad9a3f633b06428d9db93b64ae8}} 
+void {\bfseries output\+\_\+fired} (int time, double delta)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a03edb0e838cde2e01b73d845d9d6ca62}\label{class_r_n_n___node_a03edb0e838cde2e01b73d845d9d6ca62}} 
+void {\bfseries error\+\_\+fired} (int time, double error)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_ac1a3bf5e7c4fe93b67e927899d4a0263}\label{class_r_n_n___node_ac1a3bf5e7c4fe93b67e927899d4a0263}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a7749f740fb57f65d8b0778929d8f8668}\label{class_r_n_n___node_a7749f740fb57f65d8b0778929d8f8668}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a13192a2c1d1e587827be5d8e003cbe05}\label{class_r_n_n___node_a13192a2c1d1e587827be5d8e003cbe05}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a8c02e26e838585a48aa8639950f5cd9c}\label{class_r_n_n___node_a8c02e26e838585a48aa8639950f5cd9c}} 
+void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_aae3fe04e2c6eb18466c6e6fcb19bc97b}\label{class_r_n_n___node_aae3fe04e2c6eb18466c6e6fcb19bc97b}} 
+void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a209e68001af6e3eac8fd2903cd1fc967}\label{class_r_n_n___node_a209e68001af6e3eac8fd2903cd1fc967}} 
+void {\bfseries reset} (int \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_abf695f8d9775e998eef3a47875608081}\label{class_r_n_n___node_abf695f8d9775e998eef3a47875608081}} 
+void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a4774edbef71ad13050408a285e7a9c4f}\label{class_r_n_n___node_a4774edbef71ad13050408a285e7a9c4f}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a8028785fee24985de849c1d30d602fbe}\label{class_r_n_n___node_a8028785fee24985de849c1d30d602fbe}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_ab99c963decabc8c825187d04c99ef882}\label{class_r_n_n___node_ab99c963decabc8c825187d04c99ef882}} 
+double {\bfseries bias}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a429f8cfe7d6ffc993ea52d6165ee895e}\label{class_r_n_n___node_a429f8cfe7d6ffc993ea52d6165ee895e}} 
+double {\bfseries d\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_aa531ec01369636171d6551fbf9c347c0}\label{class_r_n_n___node_aa531ec01369636171d6551fbf9c347c0}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+output}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_r_n_n___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\end{DoxyCompactItemize}
+\doxysubsection*{Additional Inherited Members}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+node.\+hxx\item 
+rnn/rnn\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_r_n_n___node___interface.eps b/docs/latex/class_r_n_n___node___interface.eps
new file mode 100644
index 00000000..60465271
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+++ b/docs/latex/class_r_n_n___node___interface.eps
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+%%Creator: Doxygen
+%%CreationDate: Time
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+{
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+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(RNN_Node_Interface) cw
+(Delta_Node) cw
+(ENARC_Node) cw
+(ENAS_DAG_Node) cw
+(GRU_Node) cw
+(LSTM_Node) cw
+(MGU_Node) cw
+(RANDOM_DAG_Node) cw
+(RNN_Node) cw
+(UGRNN_Node) cw
+/boxwidth boxwidth marginwidth 2 mul add def
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+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
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+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (RNN_Node_Interface) 0.000000 9.000000 box
+ (Delta_Node) 1.000000 8.000000 box
+ (ENARC_Node) 1.000000 7.000000 box
+ (ENAS_DAG_Node) 1.000000 6.000000 box
+ (GRU_Node) 1.000000 5.000000 box
+ (LSTM_Node) 1.000000 4.000000 box
+ (MGU_Node) 1.000000 3.000000 box
+ (RANDOM_DAG_Node) 1.000000 2.000000 box
+ (RNN_Node) 1.000000 1.000000 box
+ (UGRNN_Node) 1.000000 0.000000 box
+
+% ----- relations -----
+
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diff --git a/docs/latex/class_r_n_n___node___interface.tex b/docs/latex/class_r_n_n___node___interface.tex
new file mode 100644
index 00000000..07a6663c
--- /dev/null
+++ b/docs/latex/class_r_n_n___node___interface.tex
@@ -0,0 +1,173 @@
+\hypertarget{class_r_n_n___node___interface}{}\doxysection{R\+N\+N\+\_\+\+Node\+\_\+\+Interface Class Reference}
+\label{class_r_n_n___node___interface}\index{RNN\_Node\_Interface@{RNN\_Node\_Interface}}
+Inheritance diagram for R\+N\+N\+\_\+\+Node\+\_\+\+Interface\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=10.000000cm]{class_r_n_n___node___interface}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a1ed251d94070783d6b2b0c1cf86d242c}\label{class_r_n_n___node___interface_a1ed251d94070783d6b2b0c1cf86d242c}} 
+{\bfseries R\+N\+N\+\_\+\+Node\+\_\+\+Interface} (int32\+\_\+t \+\_\+innovation\+\_\+number, int32\+\_\+t \+\_\+layer\+\_\+type, double \+\_\+depth)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a12039a9af458fd5891dab3a8ea50ffb1}\label{class_r_n_n___node___interface_a12039a9af458fd5891dab3a8ea50ffb1}} 
+{\bfseries R\+N\+N\+\_\+\+Node\+\_\+\+Interface} (int32\+\_\+t \+\_\+innovation\+\_\+number, int32\+\_\+t \+\_\+layer\+\_\+type, double \+\_\+depth, \textbf{ string} \+\_\+parameter\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_aa7c16f34b699b23e2d30dbd6fe871913}\label{class_r_n_n___node___interface_aa7c16f34b699b23e2d30dbd6fe871913}} 
+virtual void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a82a6cd2740ad9ec251ce70b9ccf7d996}\label{class_r_n_n___node___interface_a82a6cd2740ad9ec251ce70b9ccf7d996}} 
+virtual void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+1\+\_\+1, double range)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a151b062476ee718b6fa2c3dad7e1321e}\label{class_r_n_n___node___interface_a151b062476ee718b6fa2c3dad7e1321e}} 
+virtual void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a98663b8e304619c8d8605f5a56432ea5}\label{class_r_n_n___node___interface_a98663b8e304619c8d8605f5a56432ea5}} 
+virtual void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_abb54d5403840c537bc19682349d3e762}\label{class_r_n_n___node___interface_abb54d5403840c537bc19682349d3e762}} 
+virtual void {\bfseries input\+\_\+fired} (int32\+\_\+t time, double incoming\+\_\+output)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a7494e26e1a8f314c8b7d9b74317d3d50}\label{class_r_n_n___node___interface_a7494e26e1a8f314c8b7d9b74317d3d50}} 
+virtual void {\bfseries output\+\_\+fired} (int32\+\_\+t time, double delta)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_ab633cfb84590079eb3ebea113d61ba4f}\label{class_r_n_n___node___interface_ab633cfb84590079eb3ebea113d61ba4f}} 
+virtual void {\bfseries error\+\_\+fired} (int32\+\_\+t time, double error)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a9dae249230f9d8e11110194a640e80c6}\label{class_r_n_n___node___interface_a9dae249230f9d8e11110194a640e80c6}} 
+virtual uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const =0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_abba707a02d11beb0fe4c2e03cc0dc42a}\label{class_r_n_n___node___interface_abba707a02d11beb0fe4c2e03cc0dc42a}} 
+virtual void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const =0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_af688d6a3b57727e8911231e1d5eebd33}\label{class_r_n_n___node___interface_af688d6a3b57727e8911231e1d5eebd33}} 
+virtual void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_aedcd5447e23943fe1da641ada677d534}\label{class_r_n_n___node___interface_aedcd5447e23943fe1da641ada677d534}} 
+virtual void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const =0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a649275fa498dc678b3ca338d1cb9d783}\label{class_r_n_n___node___interface_a649275fa498dc678b3ca338d1cb9d783}} 
+virtual void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_afc25f125bd5cb202da61775a129aa8e7}\label{class_r_n_n___node___interface_afc25f125bd5cb202da61775a129aa8e7}} 
+virtual void {\bfseries reset} (int32\+\_\+t \+\_\+series\+\_\+length)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_acd325630d2e23b6474cac709a6fe8aa9}\label{class_r_n_n___node___interface_acd325630d2e23b6474cac709a6fe8aa9}} 
+virtual void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)=0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a39bcbf8e1dfda95c76c4b4dde3756aab}\label{class_r_n_n___node___interface_a39bcbf8e1dfda95c76c4b4dde3756aab}} 
+virtual \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const =0
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a4d8c4486d28d4868ec1278412af9e475}\label{class_r_n_n___node___interface_a4d8c4486d28d4868ec1278412af9e475}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a79fbf0876637a93db67d589c94c60eeb}\label{class_r_n_n___node___interface_a79fbf0876637a93db67d589c94c60eeb}} 
+int32\+\_\+t {\bfseries get\+\_\+node\+\_\+type} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a07da15405db940a34d98ca1d2558fc3d}\label{class_r_n_n___node___interface_a07da15405db940a34d98ca1d2558fc3d}} 
+int32\+\_\+t {\bfseries get\+\_\+layer\+\_\+type} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a2889720fbe6f13b3429e425054adee10}\label{class_r_n_n___node___interface_a2889720fbe6f13b3429e425054adee10}} 
+int32\+\_\+t {\bfseries get\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a50ae2eb211394265e4e3a1f852fc11f0}\label{class_r_n_n___node___interface_a50ae2eb211394265e4e3a1f852fc11f0}} 
+int32\+\_\+t {\bfseries get\+\_\+total\+\_\+inputs} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_ac8140b8f6edb1bc09684506d5c73aed4}\label{class_r_n_n___node___interface_ac8140b8f6edb1bc09684506d5c73aed4}} 
+int32\+\_\+t {\bfseries get\+\_\+total\+\_\+outputs} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a9b0894ad2ea635baeff5412cb28ad9c8}\label{class_r_n_n___node___interface_a9b0894ad2ea635baeff5412cb28ad9c8}} 
+double {\bfseries get\+\_\+depth} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a6ed255dc833d76ee085c28c386de98a5}\label{class_r_n_n___node___interface_a6ed255dc833d76ee085c28c386de98a5}} 
+bool {\bfseries equals} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$other) const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_aa257c9ad4810286a299bd2dbf4bb60c5}\label{class_r_n_n___node___interface_aa257c9ad4810286a299bd2dbf4bb60c5}} 
+bool {\bfseries is\+\_\+reachable} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a06c31a95dd9778bb6514ddcd52686787}\label{class_r_n_n___node___interface_a06c31a95dd9778bb6514ddcd52686787}} 
+bool {\bfseries is\+\_\+enabled} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Protected Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_ab3d935f5a1caa3900c4505da98e915f1}\label{class_r_n_n___node___interface_ab3d935f5a1caa3900c4505da98e915f1}} 
+int32\+\_\+t {\bfseries innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_aa54842fb73233d8f91a159d87aeb381e}\label{class_r_n_n___node___interface_aa54842fb73233d8f91a159d87aeb381e}} 
+int32\+\_\+t {\bfseries layer\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a91dcdce3c6c1e68304d51f44fa73d576}\label{class_r_n_n___node___interface_a91dcdce3c6c1e68304d51f44fa73d576}} 
+int32\+\_\+t {\bfseries node\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a2aecf23b8204552a75b1f3e94ce3459c}\label{class_r_n_n___node___interface_a2aecf23b8204552a75b1f3e94ce3459c}} 
+double {\bfseries depth}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_aa58f88dcf01abb3960b55e8ed30a3255}\label{class_r_n_n___node___interface_aa58f88dcf01abb3960b55e8ed30a3255}} 
+\textbf{ string} {\bfseries parameter\+\_\+name}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a3a3a3a7db0f530439a25e83d79cb87d4}\label{class_r_n_n___node___interface_a3a3a3a7db0f530439a25e83d79cb87d4}} 
+bool {\bfseries enabled}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a0b6f3cfc74d94eee742bb4e397018d3f}\label{class_r_n_n___node___interface_a0b6f3cfc74d94eee742bb4e397018d3f}} 
+bool {\bfseries backward\+\_\+reachable}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a191a9b1cc5fa8f7dd97fbf6028abfe40}\label{class_r_n_n___node___interface_a191a9b1cc5fa8f7dd97fbf6028abfe40}} 
+bool {\bfseries forward\+\_\+reachable}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_afb2167b706fbbc8caf8b364d7934c3d9}\label{class_r_n_n___node___interface_afb2167b706fbbc8caf8b364d7934c3d9}} 
+int32\+\_\+t {\bfseries series\+\_\+length}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a9395b960e01323ccd24183a1f45d5938}\label{class_r_n_n___node___interface_a9395b960e01323ccd24183a1f45d5938}} 
+\textbf{ vector}$<$ double $>$ {\bfseries input\+\_\+values}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_ad7ed0327697e9492b383b8779ea52a29}\label{class_r_n_n___node___interface_ad7ed0327697e9492b383b8779ea52a29}} 
+\textbf{ vector}$<$ double $>$ {\bfseries output\+\_\+values}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a511a9004d71ce185b061ce8d5022ca64}\label{class_r_n_n___node___interface_a511a9004d71ce185b061ce8d5022ca64}} 
+\textbf{ vector}$<$ double $>$ {\bfseries error\+\_\+values}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a7c6204d57bb37a40c7b243110c0f7a34}\label{class_r_n_n___node___interface_a7c6204d57bb37a40c7b243110c0f7a34}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+input}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a396bea6cb6d6dd595e53e252356f09c6}\label{class_r_n_n___node___interface_a396bea6cb6d6dd595e53e252356f09c6}} 
+\textbf{ vector}$<$ int32\+\_\+t $>$ {\bfseries inputs\+\_\+fired}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_af1cbfce95ce6034addf1696a045d8d12}\label{class_r_n_n___node___interface_af1cbfce95ce6034addf1696a045d8d12}} 
+\textbf{ vector}$<$ int32\+\_\+t $>$ {\bfseries outputs\+\_\+fired}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a772814201f16a86ee6ea1f8700e7826b}\label{class_r_n_n___node___interface_a772814201f16a86ee6ea1f8700e7826b}} 
+int32\+\_\+t {\bfseries total\+\_\+inputs}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a0148cba9d2537a52d5402e246e14209c}\label{class_r_n_n___node___interface_a0148cba9d2537a52d5402e246e14209c}} 
+int32\+\_\+t {\bfseries total\+\_\+outputs}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_r_n_n___node___interface_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a4a4558cee1b41082e2c3123452a35b99}\label{class_r_n_n___node___interface_a4a4558cee1b41082e2c3123452a35b99}} 
+class {\bfseries R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a67a4ae33f841a6e1d186c84e9490a802}\label{class_r_n_n___node___interface_a67a4ae33f841a6e1d186c84e9490a802}} 
+class {\bfseries R\+NN}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_ad7617134ea6662be9dc1ad79223de4d1}\label{class_r_n_n___node___interface_ad7617134ea6662be9dc1ad79223de4d1}} 
+class {\bfseries R\+N\+N\+\_\+\+Genome}
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a3c6fd1b1841f1808870f8f228c5d021e}\label{class_r_n_n___node___interface_a3c6fd1b1841f1808870f8f228c5d021e}} 
+void {\bfseries get\+\_\+mse} (\mbox{\hyperlink{class_r_n_n}{R\+NN}} $\ast$genome, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected, double \&mse, \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&deltas)
+\item 
+\mbox{\Hypertarget{class_r_n_n___node___interface_a744ea213e57442af35ac90ea397ce97c}\label{class_r_n_n___node___interface_a744ea213e57442af35ac90ea397ce97c}} 
+void {\bfseries get\+\_\+mae} (\mbox{\hyperlink{class_r_n_n}{R\+NN}} $\ast$genome, const \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&expected, double \&mae, \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&deltas)
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+node\+\_\+interface.\+hxx\item 
+rnn/rnn\+\_\+node\+\_\+interface.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_r_n_n___recurrent___edge.tex b/docs/latex/class_r_n_n___recurrent___edge.tex
new file mode 100644
index 00000000..480dc0c7
--- /dev/null
+++ b/docs/latex/class_r_n_n___recurrent___edge.tex
@@ -0,0 +1,128 @@
+\hypertarget{class_r_n_n___recurrent___edge}{}\doxysection{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge Class Reference}
+\label{class_r_n_n___recurrent___edge}\index{RNN\_Recurrent\_Edge@{RNN\_Recurrent\_Edge}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a72713f1cbaad9fbeb86eb1ffef0c2efd}\label{class_r_n_n___recurrent___edge_a72713f1cbaad9fbeb86eb1ffef0c2efd}} 
+{\bfseries R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge} (int32\+\_\+t \+\_\+innovation\+\_\+number, int32\+\_\+t \+\_\+recurrent\+\_\+depth, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$\+\_\+input\+\_\+node, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$\+\_\+output\+\_\+node)
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a044d926f5d94ce66dee9f9614d959153}\label{class_r_n_n___recurrent___edge_a044d926f5d94ce66dee9f9614d959153}} 
+{\bfseries R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge} (int32\+\_\+t \+\_\+innovation\+\_\+number, int32\+\_\+t \+\_\+recurrent\+\_\+depth, int32\+\_\+t \+\_\+input\+\_\+innovation\+\_\+number, int32\+\_\+t \+\_\+output\+\_\+innovation\+\_\+number, const \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ \&nodes)
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_acc912e2029fdfdb75b5c702568f4a390}\label{class_r_n_n___recurrent___edge_acc912e2029fdfdb75b5c702568f4a390}} 
+void {\bfseries reset} (int32\+\_\+t \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a88e73a1cce0055a9d9109bca3a3ba7d0}\label{class_r_n_n___recurrent___edge_a88e73a1cce0055a9d9109bca3a3ba7d0}} 
+void {\bfseries first\+\_\+propagate\+\_\+forward} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a75a5e034d3e6e41114e5594e205bafe0}\label{class_r_n_n___recurrent___edge_a75a5e034d3e6e41114e5594e205bafe0}} 
+void {\bfseries first\+\_\+propagate\+\_\+backward} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a2b09fcc3a29bfa00f5b16e5cc4d4af76}\label{class_r_n_n___recurrent___edge_a2b09fcc3a29bfa00f5b16e5cc4d4af76}} 
+void {\bfseries propagate\+\_\+forward} (int32\+\_\+t time)
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a810844d50e03886c1559cf9a7e59bec5}\label{class_r_n_n___recurrent___edge_a810844d50e03886c1559cf9a7e59bec5}} 
+void {\bfseries propagate\+\_\+backward} (int32\+\_\+t time)
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a16621650b521d5ebf2ebd7b08a2534bb}\label{class_r_n_n___recurrent___edge_a16621650b521d5ebf2ebd7b08a2534bb}} 
+int32\+\_\+t {\bfseries get\+\_\+recurrent\+\_\+depth} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a5540cafacf5e66f78b7e819a51d054fc}\label{class_r_n_n___recurrent___edge_a5540cafacf5e66f78b7e819a51d054fc}} 
+double {\bfseries get\+\_\+gradient} ()
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a21df6982830969182d0b55ae8595e197}\label{class_r_n_n___recurrent___edge_a21df6982830969182d0b55ae8595e197}} 
+bool {\bfseries is\+\_\+enabled} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a12988eeeb3de196e475ea52599ad4b9a}\label{class_r_n_n___recurrent___edge_a12988eeeb3de196e475ea52599ad4b9a}} 
+bool {\bfseries is\+\_\+reachable} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_accc2d4b08cd9c10b0f35cf518671a25a}\label{class_r_n_n___recurrent___edge_accc2d4b08cd9c10b0f35cf518671a25a}} 
+\mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$ {\bfseries copy} (const \textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ $>$ new\+\_\+nodes)
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_abdf545b03b660ce08b5eb97e79429e7b}\label{class_r_n_n___recurrent___edge_abdf545b03b660ce08b5eb97e79429e7b}} 
+int32\+\_\+t {\bfseries get\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a372a3fad06ee08fc7686111e6be81004}\label{class_r_n_n___recurrent___edge_a372a3fad06ee08fc7686111e6be81004}} 
+int32\+\_\+t {\bfseries get\+\_\+input\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_afeb227fa13fe2946edd506e6016c48b3}\label{class_r_n_n___recurrent___edge_afeb227fa13fe2946edd506e6016c48b3}} 
+int32\+\_\+t {\bfseries get\+\_\+output\+\_\+innovation\+\_\+number} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a0b66bd9658e2049245c7bc2c14707c17}\label{class_r_n_n___recurrent___edge_a0b66bd9658e2049245c7bc2c14707c17}} 
+const \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries get\+\_\+input\+\_\+node} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_aa61575182a11fdedf9d149e705558512}\label{class_r_n_n___recurrent___edge_aa61575182a11fdedf9d149e705558512}} 
+const \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries get\+\_\+output\+\_\+node} () const
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_aa67b33ae980f8208d4b504614069a658}\label{class_r_n_n___recurrent___edge_aa67b33ae980f8208d4b504614069a658}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a28305f514020e5833190881b9b16114b}\label{class_r_n_n___recurrent___edge_a28305f514020e5833190881b9b16114b}} 
+bool {\bfseries equals} (\mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$other) const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a5ce53524137cada52785a207f105a9b9}\label{class_r_n_n___recurrent___edge_a5ce53524137cada52785a207f105a9b9}} 
+int32\+\_\+t {\bfseries innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a0b892f520f86e3007e7db209eb60e084}\label{class_r_n_n___recurrent___edge_a0b892f520f86e3007e7db209eb60e084}} 
+int32\+\_\+t {\bfseries series\+\_\+length}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a1136d65abbe681dacd19146ace2cc887}\label{class_r_n_n___recurrent___edge_a1136d65abbe681dacd19146ace2cc887}} 
+int32\+\_\+t {\bfseries recurrent\+\_\+depth}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_aadc45131f473bf541125dd20d0ed6c2b}\label{class_r_n_n___recurrent___edge_aadc45131f473bf541125dd20d0ed6c2b}} 
+\textbf{ vector}$<$ double $>$ {\bfseries outputs}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a57e7ef7d0001405829d3e1d6da66a9e8}\label{class_r_n_n___recurrent___edge_a57e7ef7d0001405829d3e1d6da66a9e8}} 
+\textbf{ vector}$<$ double $>$ {\bfseries deltas}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a3dad7b68a85e16389ce990dff0aac740}\label{class_r_n_n___recurrent___edge_a3dad7b68a85e16389ce990dff0aac740}} 
+double {\bfseries weight}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_abd495ce6865389118f07b99907f2a370}\label{class_r_n_n___recurrent___edge_abd495ce6865389118f07b99907f2a370}} 
+double {\bfseries d\+\_\+weight}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_af18d16ba4f12d42d08d021d08fb39f3a}\label{class_r_n_n___recurrent___edge_af18d16ba4f12d42d08d021d08fb39f3a}} 
+bool {\bfseries enabled}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a1b411f2aee9fd86a788c4ea5a02e596b}\label{class_r_n_n___recurrent___edge_a1b411f2aee9fd86a788c4ea5a02e596b}} 
+bool {\bfseries forward\+\_\+reachable}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a89c11eddab2fbb0161cb539ec8ea568d}\label{class_r_n_n___recurrent___edge_a89c11eddab2fbb0161cb539ec8ea568d}} 
+bool {\bfseries backward\+\_\+reachable}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_aaa0ba8b635b327b14c98191a3aea5d5c}\label{class_r_n_n___recurrent___edge_aaa0ba8b635b327b14c98191a3aea5d5c}} 
+int32\+\_\+t {\bfseries input\+\_\+innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_aa7eb8f59343e7bde97be982800b4e9b8}\label{class_r_n_n___recurrent___edge_aa7eb8f59343e7bde97be982800b4e9b8}} 
+int32\+\_\+t {\bfseries output\+\_\+innovation\+\_\+number}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_adf689004642ab9b6aeced74710d0bf81}\label{class_r_n_n___recurrent___edge_adf689004642ab9b6aeced74710d0bf81}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries input\+\_\+node}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_adc1cdb8da7effc4a9bf72162171351f4}\label{class_r_n_n___recurrent___edge_adc1cdb8da7effc4a9bf72162171351f4}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries output\+\_\+node}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_ad7617134ea6662be9dc1ad79223de4d1}\label{class_r_n_n___recurrent___edge_ad7617134ea6662be9dc1ad79223de4d1}} 
+class {\bfseries R\+N\+N\+\_\+\+Genome}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a67a4ae33f841a6e1d186c84e9490a802}\label{class_r_n_n___recurrent___edge_a67a4ae33f841a6e1d186c84e9490a802}} 
+class {\bfseries R\+NN}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_a7850c8d4e61c10934acf1a9a98347cf3}\label{class_r_n_n___recurrent___edge_a7850c8d4e61c10934acf1a9a98347cf3}} 
+class {\bfseries E\+X\+A\+MM}
+\item 
+\mbox{\Hypertarget{class_r_n_n___recurrent___edge_aa1d85c88a38f21ffb0ccedd474289b0e}\label{class_r_n_n___recurrent___edge_aa1d85c88a38f21ffb0ccedd474289b0e}} 
+class {\bfseries Rec\+Depth\+Frequency\+Table}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+recurrent\+\_\+edge.\+hxx\item 
+rnn/rnn\+\_\+recurrent\+\_\+edge.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_rectangle.tex b/docs/latex/class_rectangle.tex
new file mode 100644
index 00000000..10ad35ce
--- /dev/null
+++ b/docs/latex/class_rectangle.tex
@@ -0,0 +1,29 @@
+\hypertarget{class_rectangle}{}\doxysection{Rectangle Class Reference}
+\label{class_rectangle}\index{Rectangle@{Rectangle}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_rectangle_aa9fae674a9a6b318018142b5f42f3768}\label{class_rectangle_aa9fae674a9a6b318018142b5f42f3768}} 
+{\bfseries Rectangle} (int \+\_\+y1, int \+\_\+x1, int \+\_\+y2, int \+\_\+x2)
+\end{DoxyCompactItemize}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_rectangle_ac2b150995b6a32b57eb714cdef42e605}\label{class_rectangle_ac2b150995b6a32b57eb714cdef42e605}} 
+int {\bfseries y1}
+\item 
+\mbox{\Hypertarget{class_rectangle_a064169457a135887c8bf000ce818ce53}\label{class_rectangle_a064169457a135887c8bf000ce818ce53}} 
+int {\bfseries x1}
+\item 
+\mbox{\Hypertarget{class_rectangle_abeb95aefc414dc72b87788e3b59cbce4}\label{class_rectangle_abeb95aefc414dc72b87788e3b59cbce4}} 
+int {\bfseries y2}
+\item 
+\mbox{\Hypertarget{class_rectangle_a6be48348b223ae31303071f26713da5e}\label{class_rectangle_a6be48348b223ae31303071f26713da5e}} 
+int {\bfseries x2}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/mosaic\+\_\+image\+\_\+set.\+hxx\item 
+image\+\_\+tools/mosaic\+\_\+image\+\_\+set.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_run_statistics.tex b/docs/latex/class_run_statistics.tex
new file mode 100644
index 00000000..af84fb12
--- /dev/null
+++ b/docs/latex/class_run_statistics.tex
@@ -0,0 +1,110 @@
+\hypertarget{class_run_statistics}{}\doxysection{Run\+Statistics Class Reference}
+\label{class_run_statistics}\index{RunStatistics@{RunStatistics}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_run_statistics_aada18d05928d15f0937b647e0e0ddb36}\label{class_run_statistics_aada18d05928d15f0937b647e0e0ddb36}} 
+{\bfseries Run\+Statistics} (\textbf{ string} \+\_\+output\+\_\+name, \textbf{ string} \+\_\+run\+\_\+type)
+\item 
+\mbox{\Hypertarget{class_run_statistics_adb42eaf8aaeacb5350d0a285bfcabb2e}\label{class_run_statistics_adb42eaf8aaeacb5350d0a285bfcabb2e}} 
+void {\bfseries set\+\_\+deviation\+\_\+from\+\_\+mean\+\_\+min} (double \+\_\+dfm\+\_\+min)
+\item 
+\mbox{\Hypertarget{class_run_statistics_a17cd01d16423bb7aed2d95cb502e7417}\label{class_run_statistics_a17cd01d16423bb7aed2d95cb502e7417}} 
+void {\bfseries set\+\_\+deviation\+\_\+from\+\_\+mean\+\_\+avg} (double \+\_\+dfm\+\_\+avg)
+\item 
+\mbox{\Hypertarget{class_run_statistics_a46f148f5743fabb9e87262a73a6eaf5f}\label{class_run_statistics_a46f148f5743fabb9e87262a73a6eaf5f}} 
+void {\bfseries set\+\_\+deviation\+\_\+from\+\_\+mean\+\_\+max} (double \+\_\+dfm\+\_\+max)
+\item 
+\mbox{\Hypertarget{class_run_statistics_aeae58ae7ee17f92de0ab01edcb3b1241}\label{class_run_statistics_aeae58ae7ee17f92de0ab01edcb3b1241}} 
+\textbf{ string} {\bfseries correlate\+\_\+header} ()
+\item 
+\mbox{\Hypertarget{class_run_statistics_aa1a246e13f1a1d1646042d9334c5637c}\label{class_run_statistics_aa1a246e13f1a1d1646042d9334c5637c}} 
+\textbf{ string} {\bfseries to\+\_\+string\+\_\+min} ()
+\item 
+\mbox{\Hypertarget{class_run_statistics_a2264c70c93551e52ef650f738a8838cd}\label{class_run_statistics_a2264c70c93551e52ef650f738a8838cd}} 
+\textbf{ string} {\bfseries to\+\_\+string\+\_\+avg} ()
+\item 
+\mbox{\Hypertarget{class_run_statistics_a0672f3422bd8d4da2c9bad4d99f86f88}\label{class_run_statistics_a0672f3422bd8d4da2c9bad4d99f86f88}} 
+\textbf{ string} {\bfseries to\+\_\+string\+\_\+max} ()
+\item 
+\mbox{\Hypertarget{class_run_statistics_ae3b3969f67faa836c080a5cf89b13a9b}\label{class_run_statistics_ae3b3969f67faa836c080a5cf89b13a9b}} 
+\textbf{ string} {\bfseries to\+\_\+string\+\_\+stddev} ()
+\item 
+\mbox{\Hypertarget{class_run_statistics_afaee4dedd2d97487a214b5bfffe99c4f}\label{class_run_statistics_afaee4dedd2d97487a214b5bfffe99c4f}} 
+\textbf{ string} {\bfseries to\+\_\+string\+\_\+correlate} (\textbf{ string} target\+\_\+name, \mbox{\hyperlink{class_tracker}{Tracker}} \&target)
+\item 
+\mbox{\Hypertarget{class_run_statistics_a3ec72004f8e035b187bab2be5d1e0edb}\label{class_run_statistics_a3ec72004f8e035b187bab2be5d1e0edb}} 
+\textbf{ string} {\bfseries overview\+\_\+header} ()
+\item 
+\mbox{\Hypertarget{class_run_statistics_a9c22f12ae25f1391823c1aa9a8ec496f}\label{class_run_statistics_a9c22f12ae25f1391823c1aa9a8ec496f}} 
+\textbf{ string} {\bfseries overview\+\_\+footer} (\textbf{ string} type)
+\item 
+\mbox{\Hypertarget{class_run_statistics_a6965719818ac052e7ce7056c925b131c}\label{class_run_statistics_a6965719818ac052e7ce7056c925b131c}} 
+\textbf{ string} {\bfseries to\+\_\+overview\+\_\+string} ()
+\item 
+\mbox{\Hypertarget{class_run_statistics_ade365d166a83c798a832c82c8ec2f446}\label{class_run_statistics_ade365d166a83c798a832c82c8ec2f446}} 
+\textbf{ string} {\bfseries overview\+\_\+ff\+\_\+header} ()
+\item 
+\mbox{\Hypertarget{class_run_statistics_a26b47c6c07e076a5436859c6a589a284}\label{class_run_statistics_a26b47c6c07e076a5436859c6a589a284}} 
+\textbf{ string} {\bfseries overview\+\_\+ff\+\_\+footer} (\textbf{ string} type)
+\item 
+\mbox{\Hypertarget{class_run_statistics_a7ba9240ab76af54b36b3ad061f9159e6}\label{class_run_statistics_a7ba9240ab76af54b36b3ad061f9159e6}} 
+\textbf{ string} {\bfseries to\+\_\+overview\+\_\+ff\+\_\+string} ()
+\end{DoxyCompactItemize}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a85ca360217e0b1442b99aa1a63db39d8}\label{class_run_statistics_a85ca360217e0b1442b99aa1a63db39d8}} 
+\textbf{ string} {\bfseries output\+\_\+name}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a698543923a23620e0da79ade9f5544a9}\label{class_run_statistics_a698543923a23620e0da79ade9f5544a9}} 
+\textbf{ string} {\bfseries run\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a180c209c150f21e35f1812e52c951020}\label{class_run_statistics_a180c209c150f21e35f1812e52c951020}} 
+double {\bfseries dfm\+\_\+min}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a73924a4ce6b3a6899792a64b14d7c302}\label{class_run_statistics_a73924a4ce6b3a6899792a64b14d7c302}} 
+double {\bfseries dfm\+\_\+avg}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a7c72d9798c3df4a0e37a76d9748bacab}\label{class_run_statistics_a7c72d9798c3df4a0e37a76d9748bacab}} 
+double {\bfseries dfm\+\_\+max}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a6454692ca4f352c67b1a1f515399dc24}\label{class_run_statistics_a6454692ca4f352c67b1a1f515399dc24}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries mse}
+\item 
+\mbox{\Hypertarget{class_run_statistics_ad5cb8f22785dab8f211f3c5ea60da6cf}\label{class_run_statistics_ad5cb8f22785dab8f211f3c5ea60da6cf}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries mae}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a6d03169747c83ee1270155f6f86db7d9}\label{class_run_statistics_a6d03169747c83ee1270155f6f86db7d9}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries edge}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a4b6270cd47016d6cb056b0026ead6f0d}\label{class_run_statistics_a4b6270cd47016d6cb056b0026ead6f0d}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries rec\+\_\+edge}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a86b66d07c34cb344b8606e87df6402de}\label{class_run_statistics_a86b66d07c34cb344b8606e87df6402de}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries node}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a96f173dd4491983a29289b7bc4c1b684}\label{class_run_statistics_a96f173dd4491983a29289b7bc4c1b684}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries ff}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a621cc928e8474ee8b3e83b597095bd5b}\label{class_run_statistics_a621cc928e8474ee8b3e83b597095bd5b}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries lstm}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a443cf2682a9c5916f6e33d26867ec46d}\label{class_run_statistics_a443cf2682a9c5916f6e33d26867ec46d}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries ugrnn}
+\item 
+\mbox{\Hypertarget{class_run_statistics_ad6a81270497f657aa4b78b22245a5e81}\label{class_run_statistics_ad6a81270497f657aa4b78b22245a5e81}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries delta}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a56d3a974f7ff761fd8b4b1de384a81fb}\label{class_run_statistics_a56d3a974f7ff761fd8b4b1de384a81fb}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries mgu}
+\item 
+\mbox{\Hypertarget{class_run_statistics_a896d634bc643651ac0dfb033460d8ca9}\label{class_run_statistics_a896d634bc643651ac0dfb033460d8ca9}} 
+\mbox{\hyperlink{class_tracker}{Tracker}} {\bfseries gru}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\item 
+mpi/run\+\_\+statistics.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_sentence_series.tex b/docs/latex/class_sentence_series.tex
new file mode 100644
index 00000000..40f38b6a
--- /dev/null
+++ b/docs/latex/class_sentence_series.tex
@@ -0,0 +1,107 @@
+\hypertarget{class_sentence_series}{}\doxysection{Sentence\+Series Class Reference}
+\label{class_sentence_series}\index{SentenceSeries@{SentenceSeries}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_sentence_series_a9dd5e8b2b6405969ec0b6f1639a0cd49}\label{class_sentence_series_a9dd5e8b2b6405969ec0b6f1639a0cd49}} 
+{\bfseries Sentence\+Series} (const \textbf{ string} \+\_\+filename, const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+word\+\_\+index, const \textbf{ map}$<$ \textbf{ string}, int $>$ \&\+\_\+vocab)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a86183fa3e7691b3f4956e33eb5ed5036}\label{class_sentence_series_a86183fa3e7691b3f4956e33eb5ed5036}} 
+void {\bfseries add\+\_\+word\+\_\+series} (\textbf{ string} name)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a256748d3020dfb23320fec748285bfcd}\label{class_sentence_series_a256748d3020dfb23320fec748285bfcd}} 
+int {\bfseries get\+\_\+number\+\_\+rows} () const
+\item 
+\mbox{\Hypertarget{class_sentence_series_aa9d03674846a3ca929bf4c19f6d159a2}\label{class_sentence_series_aa9d03674846a3ca929bf4c19f6d159a2}} 
+int {\bfseries get\+\_\+number\+\_\+columns} () const
+\item 
+\mbox{\Hypertarget{class_sentence_series_aa98fbace558de995c1d09fe9320786a0}\label{class_sentence_series_aa98fbace558de995c1d09fe9320786a0}} 
+\textbf{ string} {\bfseries get\+\_\+filename} () const
+\item 
+\mbox{\Hypertarget{class_sentence_series_ae508f8a74847a39cd05f43933b652380}\label{class_sentence_series_ae508f8a74847a39cd05f43933b652380}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries get\+\_\+word\+\_\+index} () const
+\item 
+\mbox{\Hypertarget{class_sentence_series_a912fbfb10140e366162396c82a260a8c}\label{class_sentence_series_a912fbfb10140e366162396c82a260a8c}} 
+void {\bfseries get\+\_\+series} (\textbf{ string} word\+\_\+name, \textbf{ vector}$<$ double $>$ \&series)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a192d7b7c36b2974d1a757bca19fd7116}\label{class_sentence_series_a192d7b7c36b2974d1a757bca19fd7116}} 
+double {\bfseries get\+\_\+min} (\textbf{ string} word)
+\item 
+\mbox{\Hypertarget{class_sentence_series_ada1c70ab14a3af0961fa5f9536bc7a73}\label{class_sentence_series_ada1c70ab14a3af0961fa5f9536bc7a73}} 
+double {\bfseries get\+\_\+average} (\textbf{ string} word)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a15e2b176f35810f7b2732aad331e71df}\label{class_sentence_series_a15e2b176f35810f7b2732aad331e71df}} 
+double {\bfseries get\+\_\+max} (\textbf{ string} word)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a5257b87e1506b11490c25a2189d18fec}\label{class_sentence_series_a5257b87e1506b11490c25a2189d18fec}} 
+double {\bfseries get\+\_\+std\+\_\+dev} (\textbf{ string} word)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a229548660c2d523582d9cefada876a83}\label{class_sentence_series_a229548660c2d523582d9cefada876a83}} 
+double {\bfseries get\+\_\+variance} (\textbf{ string} word)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a9a769265817ce471dd8c5d12c8e95bd2}\label{class_sentence_series_a9a769265817ce471dd8c5d12c8e95bd2}} 
+double {\bfseries get\+\_\+min\+\_\+change} (\textbf{ string} word)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a92b13d7397a094e5f377f2fbc4215c19}\label{class_sentence_series_a92b13d7397a094e5f377f2fbc4215c19}} 
+double {\bfseries get\+\_\+max\+\_\+change} (\textbf{ string} word)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a69379261de439200738732a3af56b2c4}\label{class_sentence_series_a69379261de439200738732a3af56b2c4}} 
+double {\bfseries get\+\_\+correlation} (\textbf{ string} word1, \textbf{ string} word2, \textbf{ int32\+\_\+t} lag) const
+\item 
+\mbox{\Hypertarget{class_sentence_series_ab4b3eae0c436701a5350037ac0119c10}\label{class_sentence_series_ab4b3eae0c436701a5350037ac0119c10}} 
+void {\bfseries normalize\+\_\+min\+\_\+max} (\textbf{ string} word, double min, double max)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a6ab9942ca671b0b6b1f445ef992db753}\label{class_sentence_series_a6ab9942ca671b0b6b1f445ef992db753}} 
+void {\bfseries normalize\+\_\+avg\+\_\+std\+\_\+dev} (\textbf{ string} word, double avg, double std\+\_\+dev, double norm\+\_\+max)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a68a6931ce95999cb1d23ef6a39d2c65d}\label{class_sentence_series_a68a6931ce95999cb1d23ef6a39d2c65d}} 
+void {\bfseries export\+\_\+word\+\_\+series} (\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&data, int word\+\_\+offset)
+\item 
+\mbox{\Hypertarget{class_sentence_series_ad6acf989bd60775b629ed3c854c024a0}\label{class_sentence_series_ad6acf989bd60775b629ed3c854c024a0}} 
+void {\bfseries export\+\_\+word\+\_\+series} (\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&data)
+\item 
+\mbox{\Hypertarget{class_sentence_series_a836512c4aa3a805780bbc67483a78cd5}\label{class_sentence_series_a836512c4aa3a805780bbc67483a78cd5}} 
+\mbox{\hyperlink{class_sentence_series}{Sentence\+Series}} $\ast$ {\bfseries copy} ()
+\item 
+\mbox{\Hypertarget{class_sentence_series_ac28370290290d06f8207884a4abe9465}\label{class_sentence_series_ac28370290290d06f8207884a4abe9465}} 
+void {\bfseries select\+\_\+parameters} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&output\+\_\+parameter\+\_\+names)
+\item 
+\mbox{\Hypertarget{class_sentence_series_ac179ff27ac1d0d2373cf40ddddcf7189}\label{class_sentence_series_ac179ff27ac1d0d2373cf40ddddcf7189}} 
+void {\bfseries select\+\_\+parameters} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&parameter\+\_\+names)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+int \mbox{\hyperlink{class_sentence_series_a8051bf7722f693797d589fbb6835afc2}{number\+\_\+rows}}
+\begin{DoxyCompactList}\small\item\em Specifies the number of the rows in the dataset. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_sentence_series_a71ecf2220dbde9a683361a418fd79caa}\label{class_sentence_series_a71ecf2220dbde9a683361a418fd79caa}} 
+\textbf{ string} \mbox{\hyperlink{class_sentence_series_a71ecf2220dbde9a683361a418fd79caa}{filename}}
+\begin{DoxyCompactList}\small\item\em Specifices the filename for the training or testing data. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_sentence_series_a12648e58e8101346fb1d0b9008f89084}\label{class_sentence_series_a12648e58e8101346fb1d0b9008f89084}} 
+\textbf{ map}$<$ \textbf{ string}, int $>$ \mbox{\hyperlink{class_sentence_series_a12648e58e8101346fb1d0b9008f89084}{vocab}}
+\begin{DoxyCompactList}\small\item\em Maps the word string to index of the word series in a particular string. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_sentence_series_ad0c1da927f87e6778900f1e93faf8a8e}\label{class_sentence_series_ad0c1da927f87e6778900f1e93faf8a8e}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ \mbox{\hyperlink{class_sentence_series_ad0c1da927f87e6778900f1e93faf8a8e}{word\+\_\+index}}
+\begin{DoxyCompactList}\small\item\em Maps the index to word string of the word series in a particular string. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_sentence_series_a78609974545b5e015f3a5f477d876c4b}\label{class_sentence_series_a78609974545b5e015f3a5f477d876c4b}} 
+\textbf{ map}$<$ \textbf{ string}, \mbox{\hyperlink{class_word_series}{Word\+Series}} $\ast$ $>$ \mbox{\hyperlink{class_sentence_series_a78609974545b5e015f3a5f477d876c4b}{word\+\_\+series}}
+\begin{DoxyCompactList}\small\item\em Maps the word string to the word series in a particular string. \end{DoxyCompactList}\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_sentence_series_a8051bf7722f693797d589fbb6835afc2}\label{class_sentence_series_a8051bf7722f693797d589fbb6835afc2}} 
+\index{SentenceSeries@{SentenceSeries}!number\_rows@{number\_rows}}
+\index{number\_rows@{number\_rows}!SentenceSeries@{SentenceSeries}}
+\doxysubsubsection{\texorpdfstring{number\_rows}{number\_rows}}
+{\footnotesize\ttfamily int Sentence\+Series\+::number\+\_\+rows\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies the number of the rows in the dataset. 
+
+This tells about the number of the unique words in the dataset. 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+word\+\_\+series/word\+\_\+series.\+hxx\item 
+word\+\_\+series/word\+\_\+series.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_speciation_strategy.eps b/docs/latex/class_speciation_strategy.eps
new file mode 100644
index 00000000..e6260bd3
--- /dev/null
+++ b/docs/latex/class_speciation_strategy.eps
@@ -0,0 +1,203 @@
+%!PS-Adobe-2.0 EPSF-2.0
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+%%Creator: Doxygen
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+} def
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+} def
+
+/in % draws an input connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul disty 2 div sub
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/hedge
+{
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight 2 div sub
+  /y exch def
+  /x exch def
+  newpath
+  x y moveto
+  boxwidth 2 div distx add 0 rlineto
+  stroke
+  1 eq
+  { newpath x boxwidth 2 div distx add add y moveto
+    -8 3 rlineto
+    0 -6 rlineto
+    8 3 rlineto
+    closepath
+    eofill
+    stroke
+  } if
+} def
+
+/vedge
+{
+  /ye exch def
+  /ys exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add dup
+  ys yspacing mul boxheight 2 div sub
+  moveto
+  ye yspacing mul boxheight 2 div sub
+  lineto
+  stroke
+} def
+
+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
+  moveto
+  xspacing xe xs sub mul 0
+  rlineto
+  stroke
+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(SpeciationStrategy) cw
+(IslandSpeciationStrategy) cw
+(NeatSpeciationStrategy) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (SpeciationStrategy) 0.500000 1.000000 box
+ (IslandSpeciationStrategy) 0.000000 0.000000 box
+ (NeatSpeciationStrategy) 1.000000 0.000000 box
+
+% ----- relations -----
+
+solid
+1 0.500000 0.250000 out
+solid
+0.000000 1.000000 1.000000 conn
+solid
+0 0.000000 0.750000 in
+solid
+0 1.000000 0.750000 in
diff --git a/docs/latex/class_speciation_strategy.tex b/docs/latex/class_speciation_strategy.tex
new file mode 100644
index 00000000..924c78c5
--- /dev/null
+++ b/docs/latex/class_speciation_strategy.tex
@@ -0,0 +1,211 @@
+\hypertarget{class_speciation_strategy}{}\doxysection{Speciation\+Strategy Class Reference}
+\label{class_speciation_strategy}\index{SpeciationStrategy@{SpeciationStrategy}}
+Inheritance diagram for Speciation\+Strategy\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_speciation_strategy}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+virtual int32\+\_\+t \mbox{\hyperlink{class_speciation_strategy_a7699a7050ed5a66693f19e834e9ba082}{get\+\_\+generated\+\_\+genomes}} () const =0
+\item 
+virtual int32\+\_\+t \mbox{\hyperlink{class_speciation_strategy_a1f07309130568d8cc79da44c8da6ca69}{get\+\_\+inserted\+\_\+genomes}} () const =0
+\item 
+virtual double \mbox{\hyperlink{class_speciation_strategy_afa3f2d35da2172a32ed06588ef09d4d0}{get\+\_\+best\+\_\+fitness}} ()=0
+\begin{DoxyCompactList}\small\item\em Gets the fitness of the best genome of all the islands. \end{DoxyCompactList}\item 
+virtual double \mbox{\hyperlink{class_speciation_strategy_a6bdef578fe33c628a81db35d75eaa473}{get\+\_\+worst\+\_\+fitness}} ()=0
+\begin{DoxyCompactList}\small\item\em Gets the fitness of the worst genome of all the islands. \end{DoxyCompactList}\item 
+virtual \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_speciation_strategy_ad0796098d09c25bfee14d9f264bcba2d}{get\+\_\+best\+\_\+genome}} ()=0
+\begin{DoxyCompactList}\small\item\em Gets the best genome of all the islands. \end{DoxyCompactList}\item 
+virtual \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_speciation_strategy_ae84e9c1e0eaf02886b41b1d9adf488f4}{get\+\_\+worst\+\_\+genome}} ()=0
+\begin{DoxyCompactList}\small\item\em Gets the the worst genome of all the islands. \end{DoxyCompactList}\item 
+virtual int32\+\_\+t \mbox{\hyperlink{class_speciation_strategy_a1fd87178f38052aa934312e49819e509}{insert\+\_\+genome}} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$genome)=0
+\begin{DoxyCompactList}\small\item\em Inserts a {\bfseries{copy}} of the genome into this speciation strategy. \end{DoxyCompactList}\item 
+virtual \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_speciation_strategy_a76f36f0dd7c47727aef912d48f0fa26b}{generate\+\_\+genome}} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \textbf{ function}$<$ void(int32\+\_\+t, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&mutate, \textbf{ function}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&crossover)=0
+\begin{DoxyCompactList}\small\item\em Generates a new genome. \end{DoxyCompactList}\item 
+virtual void \mbox{\hyperlink{class_speciation_strategy_a1d44f4c87ab00182e61f0fb364f274a9}{print}} (\textbf{ string} indent=\char`\"{}\char`\"{}) const =0
+\begin{DoxyCompactList}\small\item\em Prints out all the island\textquotesingle{}s populations. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_speciation_strategy_a163f199bc1dbf37157942cd3778cca20}\label{class_speciation_strategy_a163f199bc1dbf37157942cd3778cca20}} 
+virtual \textbf{ string} \mbox{\hyperlink{class_speciation_strategy_a163f199bc1dbf37157942cd3778cca20}{get\+\_\+strategy\+\_\+information\+\_\+headers}} () const =0
+\begin{DoxyCompactList}\small\item\em Gets speciation strategy information headers for logs. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_speciation_strategy_a5c6bbff0c19e3d347cef936d7b357fc0}\label{class_speciation_strategy_a5c6bbff0c19e3d347cef936d7b357fc0}} 
+virtual \textbf{ string} \mbox{\hyperlink{class_speciation_strategy_a5c6bbff0c19e3d347cef936d7b357fc0}{get\+\_\+strategy\+\_\+information\+\_\+values}} () const =0
+\begin{DoxyCompactList}\small\item\em Gets speciation strategy information values for logs. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_speciation_strategy_a2f6f73672fca1cc43a761c9bd15a2888}\label{class_speciation_strategy_a2f6f73672fca1cc43a761c9bd15a2888}} 
+virtual \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries get\+\_\+global\+\_\+best\+\_\+genome} ()=0
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_speciation_strategy_a76f36f0dd7c47727aef912d48f0fa26b}\label{class_speciation_strategy_a76f36f0dd7c47727aef912d48f0fa26b}} 
+\index{SpeciationStrategy@{SpeciationStrategy}!generate\_genome@{generate\_genome}}
+\index{generate\_genome@{generate\_genome}!SpeciationStrategy@{SpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{generate\_genome()}{generate\_genome()}}
+{\footnotesize\ttfamily virtual \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}}$\ast$ Speciation\+Strategy\+::generate\+\_\+genome (\begin{DoxyParamCaption}\item[{\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&}]{rng\+\_\+0\+\_\+1,  }\item[{\textbf{ minstd\+\_\+rand0} \&}]{generator,  }\item[{\textbf{ function}$<$ void(int32\+\_\+t, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&}]{mutate,  }\item[{\textbf{ function}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&}]{crossover }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [pure virtual]}}
+
+
+
+Generates a new genome. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em rng\+\_\+0\+\_\+1} & is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). \\
+\hline
+{\em generator} & is the random number generator \\
+\hline
+{\em mutate} & is the a function which performs a mutation on a genome \\
+\hline
+{\em crossover} & is the function which performs crossover between two genomes\\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+the newly generated genome. 
+\end{DoxyReturn}
+
+
+Implemented in \mbox{\hyperlink{class_island_speciation_strategy_a1d209dc38c374ffcb8ac7c34f72b2ce9}{Island\+Speciation\+Strategy}}, and \mbox{\hyperlink{class_neat_speciation_strategy_ae86f8696ddab1b6cc595b6e2ef0371ae}{Neat\+Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_speciation_strategy_afa3f2d35da2172a32ed06588ef09d4d0}\label{class_speciation_strategy_afa3f2d35da2172a32ed06588ef09d4d0}} 
+\index{SpeciationStrategy@{SpeciationStrategy}!get\_best\_fitness@{get\_best\_fitness}}
+\index{get\_best\_fitness@{get\_best\_fitness}!SpeciationStrategy@{SpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_best\_fitness()}{get\_best\_fitness()}}
+{\footnotesize\ttfamily virtual double Speciation\+Strategy\+::get\+\_\+best\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [pure virtual]}}
+
+
+
+Gets the fitness of the best genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the best fitness over all islands 
+\end{DoxyReturn}
+
+
+Implemented in \mbox{\hyperlink{class_island_speciation_strategy_a4db5c946c86373cf256177b35553b808}{Island\+Speciation\+Strategy}}, and \mbox{\hyperlink{class_neat_speciation_strategy_a4aab3d6d1abf3b1f2fd7cf7b8a4a1d99}{Neat\+Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_speciation_strategy_ad0796098d09c25bfee14d9f264bcba2d}\label{class_speciation_strategy_ad0796098d09c25bfee14d9f264bcba2d}} 
+\index{SpeciationStrategy@{SpeciationStrategy}!get\_best\_genome@{get\_best\_genome}}
+\index{get\_best\_genome@{get\_best\_genome}!SpeciationStrategy@{SpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_best\_genome()}{get\_best\_genome()}}
+{\footnotesize\ttfamily virtual \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}}$\ast$ Speciation\+Strategy\+::get\+\_\+best\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [pure virtual]}}
+
+
+
+Gets the best genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the best genome of all islands 
+\end{DoxyReturn}
+
+
+Implemented in \mbox{\hyperlink{class_island_speciation_strategy_a1a8a770c165b22a5070e11a3f579375e}{Island\+Speciation\+Strategy}}, and \mbox{\hyperlink{class_neat_speciation_strategy_aecf62aeba94c1f8d786215c10ea4774b}{Neat\+Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_speciation_strategy_a7699a7050ed5a66693f19e834e9ba082}\label{class_speciation_strategy_a7699a7050ed5a66693f19e834e9ba082}} 
+\index{SpeciationStrategy@{SpeciationStrategy}!get\_generated\_genomes@{get\_generated\_genomes}}
+\index{get\_generated\_genomes@{get\_generated\_genomes}!SpeciationStrategy@{SpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_generated\_genomes()}{get\_generated\_genomes()}}
+{\footnotesize\ttfamily virtual int32\+\_\+t Speciation\+Strategy\+::get\+\_\+generated\+\_\+genomes (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [pure virtual]}}
+
+\begin{DoxyReturn}{Returns}
+the number of generated genomes. 
+\end{DoxyReturn}
+
+
+Implemented in \mbox{\hyperlink{class_island_speciation_strategy_a2b75aca60616268e4a6aee93ee4e5aee}{Island\+Speciation\+Strategy}}, and \mbox{\hyperlink{class_neat_speciation_strategy_af7e48fd1afb5a9c1b422ad251366263e}{Neat\+Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_speciation_strategy_a1f07309130568d8cc79da44c8da6ca69}\label{class_speciation_strategy_a1f07309130568d8cc79da44c8da6ca69}} 
+\index{SpeciationStrategy@{SpeciationStrategy}!get\_inserted\_genomes@{get\_inserted\_genomes}}
+\index{get\_inserted\_genomes@{get\_inserted\_genomes}!SpeciationStrategy@{SpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_inserted\_genomes()}{get\_inserted\_genomes()}}
+{\footnotesize\ttfamily virtual int32\+\_\+t Speciation\+Strategy\+::get\+\_\+inserted\+\_\+genomes (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [pure virtual]}}
+
+\begin{DoxyReturn}{Returns}
+the number of inserted genomes. 
+\end{DoxyReturn}
+
+
+Implemented in \mbox{\hyperlink{class_island_speciation_strategy_ab44e2abd372cd97932dd87ed1b9c62c2}{Island\+Speciation\+Strategy}}, and \mbox{\hyperlink{class_neat_speciation_strategy_aba55a9f0006af882fd613bd0676555eb}{Neat\+Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_speciation_strategy_a6bdef578fe33c628a81db35d75eaa473}\label{class_speciation_strategy_a6bdef578fe33c628a81db35d75eaa473}} 
+\index{SpeciationStrategy@{SpeciationStrategy}!get\_worst\_fitness@{get\_worst\_fitness}}
+\index{get\_worst\_fitness@{get\_worst\_fitness}!SpeciationStrategy@{SpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_fitness()}{get\_worst\_fitness()}}
+{\footnotesize\ttfamily virtual double Speciation\+Strategy\+::get\+\_\+worst\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [pure virtual]}}
+
+
+
+Gets the fitness of the worst genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the worst fitness over all islands 
+\end{DoxyReturn}
+
+
+Implemented in \mbox{\hyperlink{class_island_speciation_strategy_a516627db390391867d6dd02f78e27caf}{Island\+Speciation\+Strategy}}, and \mbox{\hyperlink{class_neat_speciation_strategy_acbd3eaa05db725de60074276cd0bb449}{Neat\+Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_speciation_strategy_ae84e9c1e0eaf02886b41b1d9adf488f4}\label{class_speciation_strategy_ae84e9c1e0eaf02886b41b1d9adf488f4}} 
+\index{SpeciationStrategy@{SpeciationStrategy}!get\_worst\_genome@{get\_worst\_genome}}
+\index{get\_worst\_genome@{get\_worst\_genome}!SpeciationStrategy@{SpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_genome()}{get\_worst\_genome()}}
+{\footnotesize\ttfamily virtual \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}}$\ast$ Speciation\+Strategy\+::get\+\_\+worst\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [pure virtual]}}
+
+
+
+Gets the the worst genome of all the islands. 
+
+\begin{DoxyReturn}{Returns}
+the worst genome of all islands 
+\end{DoxyReturn}
+
+
+Implemented in \mbox{\hyperlink{class_island_speciation_strategy_a563860351e5f176d539bc297949d490f}{Island\+Speciation\+Strategy}}, and \mbox{\hyperlink{class_neat_speciation_strategy_a8bc6ad6a0740e2f6072aef3ad14dd3f7}{Neat\+Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_speciation_strategy_a1fd87178f38052aa934312e49819e509}\label{class_speciation_strategy_a1fd87178f38052aa934312e49819e509}} 
+\index{SpeciationStrategy@{SpeciationStrategy}!insert\_genome@{insert\_genome}}
+\index{insert\_genome@{insert\_genome}!SpeciationStrategy@{SpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{insert\_genome()}{insert\_genome()}}
+{\footnotesize\ttfamily virtual int32\+\_\+t Speciation\+Strategy\+::insert\+\_\+genome (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$}]{genome }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [pure virtual]}}
+
+
+
+Inserts a {\bfseries{copy}} of the genome into this speciation strategy. 
+
+The caller of this method will need to free the memory of the genome passed into this method.
+
+
+\begin{DoxyParams}{Parameters}
+{\em genome} & is the genome to insert. \\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+a value $<$ 0 if the genome was not inserted, 0 if it was a new best genome or $>$ 0 otherwise. 
+\end{DoxyReturn}
+
+
+Implemented in \mbox{\hyperlink{class_island_speciation_strategy_a6ae98982d01c68214e4bd703fe18146f}{Island\+Speciation\+Strategy}}, and \mbox{\hyperlink{class_neat_speciation_strategy_aa2b2521a400435cbd1856aadda2051e0}{Neat\+Speciation\+Strategy}}.
+
+\mbox{\Hypertarget{class_speciation_strategy_a1d44f4c87ab00182e61f0fb364f274a9}\label{class_speciation_strategy_a1d44f4c87ab00182e61f0fb364f274a9}} 
+\index{SpeciationStrategy@{SpeciationStrategy}!print@{print}}
+\index{print@{print}!SpeciationStrategy@{SpeciationStrategy}}
+\doxysubsubsection{\texorpdfstring{print()}{print()}}
+{\footnotesize\ttfamily virtual void Speciation\+Strategy\+::print (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{indent = {\ttfamily \char`\"{}\char`\"{}} }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [pure virtual]}}
+
+
+
+Prints out all the island\textquotesingle{}s populations. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em indent} & is how much to indent what is printed out \\
+\hline
+\end{DoxyParams}
+
+
+Implemented in \mbox{\hyperlink{class_island_speciation_strategy_a4ba6785df117932f3c465cbc31a5ca3f}{Island\+Speciation\+Strategy}}, and \mbox{\hyperlink{class_neat_speciation_strategy_abef17e0293c2e0a64b3b4b3b9b7775d2}{Neat\+Speciation\+Strategy}}.
+
+
+
+The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/speciation\+\_\+strategy.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_species.tex b/docs/latex/class_species.tex
new file mode 100644
index 00000000..9ecce1ae
--- /dev/null
+++ b/docs/latex/class_species.tex
@@ -0,0 +1,238 @@
+\hypertarget{class_species}{}\doxysection{Species Class Reference}
+\label{class_species}\index{Species@{Species}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_species_a58b75aebb5ad400b89cb41e5d7700092}\label{class_species_a58b75aebb5ad400b89cb41e5d7700092}} 
+\mbox{\hyperlink{class_species_a58b75aebb5ad400b89cb41e5d7700092}{Species}} (int32\+\_\+t \mbox{\hyperlink{class_species_a2e22624d59864dbecd5ee16103b458bd}{id}})
+\begin{DoxyCompactList}\small\item\em Initializes a species. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_species_a2e3034b48d9ed1f263128ffc8ca3a295}{get\+\_\+best\+\_\+fitness}} ()
+\begin{DoxyCompactList}\small\item\em Returns the fitness of the best genome in the island. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_species_a10669846e7646b47696d90838e379a94}{get\+\_\+worst\+\_\+fitness}} ()
+\begin{DoxyCompactList}\small\item\em Returns the fitness of the worst genome in the island. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_species_a01dcea3ec17810b46167e751b2e6f4cf}{get\+\_\+best\+\_\+genome}} ()
+\begin{DoxyCompactList}\small\item\em Returns the best genomme in the island. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_species_a0a224a20baa5eb5055dada490c738d30}{get\+\_\+worst\+\_\+genome}} ()
+\begin{DoxyCompactList}\small\item\em Returns the worst genomme in the island. \end{DoxyCompactList}\item 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ \mbox{\hyperlink{class_species_afceb50adb6350b2576e897c30380fee5}{get\+\_\+random\+\_\+genome}} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator)
+\begin{DoxyCompactList}\small\item\em Returns the best genomme in the island. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_species_af9978e8876f3d43c5238225ad7b8de34}{size}} ()
+\begin{DoxyCompactList}\small\item\em Returns the size of the island. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_species_aac66b182441d124023b4df1167c7bc35}{contains}} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$genome)
+\begin{DoxyCompactList}\small\item\em Checks to see if a genome already exists in the island, using the R\+N\+N\+\_\+\+Genome\+::equals method (which checks to see if all edges and nodes are the same, but not necessarily weights). \end{DoxyCompactList}\item 
+void \mbox{\hyperlink{class_species_add70418d8b64a815998e66c89824d646}{copy\+\_\+random\+\_\+genome}} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$genome)
+\begin{DoxyCompactList}\small\item\em Selects a genome from the island at random and returns a copy of it. \end{DoxyCompactList}\item 
+void \mbox{\hyperlink{class_species_a1f3a1b23040cc266a8c9e49436f0c8a7}{copy\+\_\+two\+\_\+random\+\_\+genomes}} (\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng\+\_\+0\+\_\+1, \textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$genome1, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$genome2)
+\begin{DoxyCompactList}\small\item\em Selects two different genomes from the island at random and returns copies of them. \end{DoxyCompactList}\item 
+int32\+\_\+t \mbox{\hyperlink{class_species_a459a9676c5c86837233c6cc4c3843475}{insert\+\_\+genome}} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$genome)
+\begin{DoxyCompactList}\small\item\em Inserts a genome into the island. \end{DoxyCompactList}\item 
+void \mbox{\hyperlink{class_species_a2e9e0780d547c253c8532b5866b7bd4d}{print}} (\textbf{ string} indent=\char`\"{}\char`\"{})
+\begin{DoxyCompactList}\small\item\em Prints out the state of this island. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_species_aa17a7a4dbde760d366939d913b2274e0}\label{class_species_aa17a7a4dbde760d366939d913b2274e0}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ $>$ {\bfseries get\+\_\+genomes} ()
+\item 
+\mbox{\Hypertarget{class_species_aae7bdabaf8e88c01b611543baa5f3e29}\label{class_species_aae7bdabaf8e88c01b611543baa5f3e29}} 
+\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ {\bfseries get\+\_\+latested\+\_\+genome} ()
+\item 
+\mbox{\Hypertarget{class_species_ac49adf285a7511ee9d0eef9abb84cb66}\label{class_species_ac49adf285a7511ee9d0eef9abb84cb66}} 
+void {\bfseries fitness\+\_\+sharing\+\_\+remove} (double fitness\+\_\+threshold, \textbf{ function}$<$ double(\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$)$>$ \&get\+\_\+distance)
+\item 
+\mbox{\Hypertarget{class_species_a0121e0eb365c4f4b599fe8f352c4e90d}\label{class_species_a0121e0eb365c4f4b599fe8f352c4e90d}} 
+void {\bfseries erase\+\_\+species} ()
+\item 
+\mbox{\Hypertarget{class_species_a83f64a0c9132b5c21e625500211ba130}\label{class_species_a83f64a0c9132b5c21e625500211ba130}} 
+int32\+\_\+t {\bfseries get\+\_\+species\+\_\+not\+\_\+improving\+\_\+count} ()
+\item 
+\mbox{\Hypertarget{class_species_aa2ee080743b2d5ee89f156482736d704}\label{class_species_aa2ee080743b2d5ee89f156482736d704}} 
+void {\bfseries set\+\_\+species\+\_\+not\+\_\+improving\+\_\+count} (int32\+\_\+t count)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_species_a2e22624d59864dbecd5ee16103b458bd}\label{class_species_a2e22624d59864dbecd5ee16103b458bd}} 
+int32\+\_\+t \mbox{\hyperlink{class_species_a2e22624d59864dbecd5ee16103b458bd}{id}}
+\begin{DoxyCompactList}\small\item\em An integer ID for this species. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_species_a995da794f2f4a8b8b314d3d402875d5b}\label{class_species_a995da794f2f4a8b8b314d3d402875d5b}} 
+\textbf{ vector}$<$ int32\+\_\+t $>$ {\bfseries inserted\+\_\+genome\+\_\+id}
+\item 
+\mbox{\Hypertarget{class_species_a6b156c1f48620bc39bc9efe6c9324e81}\label{class_species_a6b156c1f48620bc39bc9efe6c9324e81}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ $>$ \mbox{\hyperlink{class_species_a6b156c1f48620bc39bc9efe6c9324e81}{genomes}}
+\begin{DoxyCompactList}\small\item\em The genomes on this species, stored in sorted order best (front) to worst (back). \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_species_a5b23e228631a99dadd9602b46324a20e}\label{class_species_a5b23e228631a99dadd9602b46324a20e}} 
+int32\+\_\+t {\bfseries species\+\_\+not\+\_\+improving\+\_\+count}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_species_aac66b182441d124023b4df1167c7bc35}\label{class_species_aac66b182441d124023b4df1167c7bc35}} 
+\index{Species@{Species}!contains@{contains}}
+\index{contains@{contains}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{contains()}{contains()}}
+{\footnotesize\ttfamily int32\+\_\+t Species\+::contains (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$}]{genome }\end{DoxyParamCaption})}
+
+
+
+Checks to see if a genome already exists in the island, using the R\+N\+N\+\_\+\+Genome\+::equals method (which checks to see if all edges and nodes are the same, but not necessarily weights). 
+
+\begin{DoxyReturn}{Returns}
+the index in the island of the duplicate genome, -\/1 otherwise. 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_species_add70418d8b64a815998e66c89824d646}\label{class_species_add70418d8b64a815998e66c89824d646}} 
+\index{Species@{Species}!copy\_random\_genome@{copy\_random\_genome}}
+\index{copy\_random\_genome@{copy\_random\_genome}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{copy\_random\_genome()}{copy\_random\_genome()}}
+{\footnotesize\ttfamily void Species\+::copy\+\_\+random\+\_\+genome (\begin{DoxyParamCaption}\item[{\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&}]{rng\+\_\+0\+\_\+1,  }\item[{\textbf{ minstd\+\_\+rand0} \&}]{generator,  }\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$}]{genome }\end{DoxyParamCaption})}
+
+
+
+Selects a genome from the island at random and returns a copy of it. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em rng\+\_\+0\+\_\+1} & is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). \\
+\hline
+{\em generator} & is the random number generator \\
+\hline
+{\em genome} & will be the copied genome, an addresss to a pointer needs to be passed. \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_species_a1f3a1b23040cc266a8c9e49436f0c8a7}\label{class_species_a1f3a1b23040cc266a8c9e49436f0c8a7}} 
+\index{Species@{Species}!copy\_two\_random\_genomes@{copy\_two\_random\_genomes}}
+\index{copy\_two\_random\_genomes@{copy\_two\_random\_genomes}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{copy\_two\_random\_genomes()}{copy\_two\_random\_genomes()}}
+{\footnotesize\ttfamily void Species\+::copy\+\_\+two\+\_\+random\+\_\+genomes (\begin{DoxyParamCaption}\item[{\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&}]{rng\+\_\+0\+\_\+1,  }\item[{\textbf{ minstd\+\_\+rand0} \&}]{generator,  }\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$}]{genome1,  }\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$$\ast$}]{genome2 }\end{DoxyParamCaption})}
+
+
+
+Selects two different genomes from the island at random and returns copies of them. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em rng\+\_\+0\+\_\+1} & is the random number distribution that generates random numbers between 0 (inclusive) and 1 (non=inclusive). \\
+\hline
+{\em generator} & is the random number generator \\
+\hline
+{\em genome1} & will be the first copied genome, an addresss to a pointer needs to be passed. \\
+\hline
+{\em genome2} & will be the second copied genome, an addresss to a pointer needs to be passed. \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_species_a2e3034b48d9ed1f263128ffc8ca3a295}\label{class_species_a2e3034b48d9ed1f263128ffc8ca3a295}} 
+\index{Species@{Species}!get\_best\_fitness@{get\_best\_fitness}}
+\index{get\_best\_fitness@{get\_best\_fitness}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{get\_best\_fitness()}{get\_best\_fitness()}}
+{\footnotesize\ttfamily double Species\+::get\+\_\+best\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the fitness of the best genome in the island. 
+
+\begin{DoxyReturn}{Returns}
+the best fitness of the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_species_a01dcea3ec17810b46167e751b2e6f4cf}\label{class_species_a01dcea3ec17810b46167e751b2e6f4cf}} 
+\index{Species@{Species}!get\_best\_genome@{get\_best\_genome}}
+\index{get\_best\_genome@{get\_best\_genome}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{get\_best\_genome()}{get\_best\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Species\+::get\+\_\+best\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the best genomme in the island. 
+
+\begin{DoxyReturn}{Returns}
+the best genome in the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_species_afceb50adb6350b2576e897c30380fee5}\label{class_species_afceb50adb6350b2576e897c30380fee5}} 
+\index{Species@{Species}!get\_random\_genome@{get\_random\_genome}}
+\index{get\_random\_genome@{get\_random\_genome}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{get\_random\_genome()}{get\_random\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Species\+::get\+\_\+random\+\_\+genome (\begin{DoxyParamCaption}\item[{\textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&}]{rng\+\_\+0\+\_\+1,  }\item[{\textbf{ minstd\+\_\+rand0} \&}]{generator }\end{DoxyParamCaption})}
+
+
+
+Returns the best genomme in the island. 
+
+\begin{DoxyReturn}{Returns}
+the best genome in the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_species_a10669846e7646b47696d90838e379a94}\label{class_species_a10669846e7646b47696d90838e379a94}} 
+\index{Species@{Species}!get\_worst\_fitness@{get\_worst\_fitness}}
+\index{get\_worst\_fitness@{get\_worst\_fitness}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_fitness()}{get\_worst\_fitness()}}
+{\footnotesize\ttfamily double Species\+::get\+\_\+worst\+\_\+fitness (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the fitness of the worst genome in the island. 
+
+\begin{DoxyReturn}{Returns}
+the worst fitness of the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_species_a0a224a20baa5eb5055dada490c738d30}\label{class_species_a0a224a20baa5eb5055dada490c738d30}} 
+\index{Species@{Species}!get\_worst\_genome@{get\_worst\_genome}}
+\index{get\_worst\_genome@{get\_worst\_genome}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{get\_worst\_genome()}{get\_worst\_genome()}}
+{\footnotesize\ttfamily \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$ Species\+::get\+\_\+worst\+\_\+genome (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the worst genomme in the island. 
+
+\begin{DoxyReturn}{Returns}
+the worst genome in the island 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_species_a459a9676c5c86837233c6cc4c3843475}\label{class_species_a459a9676c5c86837233c6cc4c3843475}} 
+\index{Species@{Species}!insert\_genome@{insert\_genome}}
+\index{insert\_genome@{insert\_genome}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{insert\_genome()}{insert\_genome()}}
+{\footnotesize\ttfamily int32\+\_\+t Species\+::insert\+\_\+genome (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$}]{genome }\end{DoxyParamCaption})}
+
+
+
+Inserts a genome into the island. 
+
+Genomes are inserted in best to worst order genomes\mbox{[}0\mbox{]} will have the best fitness and genomes\mbox{[}size -\/ 1\mbox{]} will have the worst.
+
+
+\begin{DoxyParams}{Parameters}
+{\em genome} & is the genome to be inserted. \\
+\hline
+\end{DoxyParams}
+\begin{DoxyReturn}{Returns}
+-\/1 if not inserted, otherwise the index it was inserted at 
+\end{DoxyReturn}
+\mbox{\Hypertarget{class_species_a2e9e0780d547c253c8532b5866b7bd4d}\label{class_species_a2e9e0780d547c253c8532b5866b7bd4d}} 
+\index{Species@{Species}!print@{print}}
+\index{print@{print}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{print()}{print()}}
+{\footnotesize\ttfamily void Species\+::print (\begin{DoxyParamCaption}\item[{\textbf{ string}}]{indent = {\ttfamily \char`\"{}\char`\"{}} }\end{DoxyParamCaption})}
+
+
+
+Prints out the state of this island. 
+
+
+\begin{DoxyParams}{Parameters}
+{\em indent} & is how much to indent what is printed out \\
+\hline
+\end{DoxyParams}
+\mbox{\Hypertarget{class_species_af9978e8876f3d43c5238225ad7b8de34}\label{class_species_af9978e8876f3d43c5238225ad7b8de34}} 
+\index{Species@{Species}!size@{size}}
+\index{size@{size}!Species@{Species}}
+\doxysubsubsection{\texorpdfstring{size()}{size()}}
+{\footnotesize\ttfamily int32\+\_\+t Species\+::size (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})}
+
+
+
+Returns the size of the island. 
+
+\begin{DoxyReturn}{Returns}
+the number of genomes in this island. 
+\end{DoxyReturn}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/species.\+hxx\item 
+rnn/species.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_time_series.tex b/docs/latex/class_time_series.tex
new file mode 100644
index 00000000..2d7e6e3a
--- /dev/null
+++ b/docs/latex/class_time_series.tex
@@ -0,0 +1,98 @@
+\hypertarget{class_time_series}{}\doxysection{Time\+Series Class Reference}
+\label{class_time_series}\index{TimeSeries@{TimeSeries}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_time_series_a94dec87ce25a87b4efbbfc49234d34e1}\label{class_time_series_a94dec87ce25a87b4efbbfc49234d34e1}} 
+{\bfseries Time\+Series} (\textbf{ string} \+\_\+name)
+\item 
+\mbox{\Hypertarget{class_time_series_af5210b5c89d3753c6ee188195c0bcd44}\label{class_time_series_af5210b5c89d3753c6ee188195c0bcd44}} 
+void {\bfseries add\+\_\+value} (double value)
+\item 
+\mbox{\Hypertarget{class_time_series_a60c68c99c8dc1e093c48d8ff87878a89}\label{class_time_series_a60c68c99c8dc1e093c48d8ff87878a89}} 
+double {\bfseries get\+\_\+value} (int i)
+\item 
+\mbox{\Hypertarget{class_time_series_aff81a5561bc2d42a2a4b47d81548a5e6}\label{class_time_series_aff81a5561bc2d42a2a4b47d81548a5e6}} 
+void {\bfseries calculate\+\_\+statistics} ()
+\item 
+\mbox{\Hypertarget{class_time_series_a67adbe58dcc6dbf93fd6b8663ea008af}\label{class_time_series_a67adbe58dcc6dbf93fd6b8663ea008af}} 
+void {\bfseries print\+\_\+statistics} ()
+\item 
+\mbox{\Hypertarget{class_time_series_aebd5cdea1096573ecb1c06cc7eda66a5}\label{class_time_series_aebd5cdea1096573ecb1c06cc7eda66a5}} 
+int {\bfseries get\+\_\+number\+\_\+values} () const
+\item 
+\mbox{\Hypertarget{class_time_series_a913b6c3364c5505da43489514b4f2819}\label{class_time_series_a913b6c3364c5505da43489514b4f2819}} 
+double {\bfseries get\+\_\+min} () const
+\item 
+\mbox{\Hypertarget{class_time_series_af1489ec51ebbf6871add6a5c6220d9d5}\label{class_time_series_af1489ec51ebbf6871add6a5c6220d9d5}} 
+double {\bfseries get\+\_\+average} () const
+\item 
+\mbox{\Hypertarget{class_time_series_a214c4e79f8850a38f5a70826fdf0201e}\label{class_time_series_a214c4e79f8850a38f5a70826fdf0201e}} 
+double {\bfseries get\+\_\+max} () const
+\item 
+\mbox{\Hypertarget{class_time_series_a674dc685e1792210bf9a47adadf6425d}\label{class_time_series_a674dc685e1792210bf9a47adadf6425d}} 
+double {\bfseries get\+\_\+std\+\_\+dev} () const
+\item 
+\mbox{\Hypertarget{class_time_series_a1aaa0b6a8ddf7ce5120580005fcf39a7}\label{class_time_series_a1aaa0b6a8ddf7ce5120580005fcf39a7}} 
+double {\bfseries get\+\_\+variance} () const
+\item 
+\mbox{\Hypertarget{class_time_series_ada09d4dbd4bbe50b8fca5295e66797a4}\label{class_time_series_ada09d4dbd4bbe50b8fca5295e66797a4}} 
+double {\bfseries get\+\_\+min\+\_\+change} () const
+\item 
+\mbox{\Hypertarget{class_time_series_aead2c24ed81ffe155f8216c3f7b9095e}\label{class_time_series_aead2c24ed81ffe155f8216c3f7b9095e}} 
+double {\bfseries get\+\_\+max\+\_\+change} () const
+\item 
+\mbox{\Hypertarget{class_time_series_a9f747fa2694e96804f20a0626f7cb46c}\label{class_time_series_a9f747fa2694e96804f20a0626f7cb46c}} 
+void {\bfseries normalize\+\_\+min\+\_\+max} (double min, double max)
+\item 
+\mbox{\Hypertarget{class_time_series_a5a54bcfbadba29460621c974e2a94f44}\label{class_time_series_a5a54bcfbadba29460621c974e2a94f44}} 
+void {\bfseries normalize\+\_\+avg\+\_\+std\+\_\+dev} (double avg, double std\+\_\+dev, double norm\+\_\+max)
+\item 
+\mbox{\Hypertarget{class_time_series_a1c87cf135c425de70550710f9c5f1d0f}\label{class_time_series_a1c87cf135c425de70550710f9c5f1d0f}} 
+void {\bfseries cut} (\textbf{ int32\+\_\+t} start, \textbf{ int32\+\_\+t} stop)
+\item 
+\mbox{\Hypertarget{class_time_series_ac3868470a5ed960f9a737e42b49baa4e}\label{class_time_series_ac3868470a5ed960f9a737e42b49baa4e}} 
+double {\bfseries get\+\_\+correlation} (const \mbox{\hyperlink{class_time_series}{Time\+Series}} $\ast$other, \textbf{ int32\+\_\+t} lag) const
+\item 
+\mbox{\Hypertarget{class_time_series_aff3fd5901ab67b755fec5a7d767c35a2}\label{class_time_series_aff3fd5901ab67b755fec5a7d767c35a2}} 
+\mbox{\hyperlink{class_time_series}{Time\+Series}} $\ast$ {\bfseries copy} ()
+\item 
+\mbox{\Hypertarget{class_time_series_a309faa5de03f6011ed67c83a6976d16a}\label{class_time_series_a309faa5de03f6011ed67c83a6976d16a}} 
+void {\bfseries copy\+\_\+values} (\textbf{ vector}$<$ double $>$ \&series)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_time_series_aa9fdde695032e2f5e0c5e3f48924bd49}\label{class_time_series_aa9fdde695032e2f5e0c5e3f48924bd49}} 
+\textbf{ string} {\bfseries name}
+\item 
+\mbox{\Hypertarget{class_time_series_a5dabaf7e9ae4c56b97a377ce8bd24558}\label{class_time_series_a5dabaf7e9ae4c56b97a377ce8bd24558}} 
+double {\bfseries min}
+\item 
+\mbox{\Hypertarget{class_time_series_afc947d70351cc4ef3b10ed6e6d77c7ce}\label{class_time_series_afc947d70351cc4ef3b10ed6e6d77c7ce}} 
+double {\bfseries average}
+\item 
+\mbox{\Hypertarget{class_time_series_ae34f322d950a627c902923ff82bcae19}\label{class_time_series_ae34f322d950a627c902923ff82bcae19}} 
+double {\bfseries max}
+\item 
+\mbox{\Hypertarget{class_time_series_a15bfcb1deb136cd05624a6da9c4be8cc}\label{class_time_series_a15bfcb1deb136cd05624a6da9c4be8cc}} 
+double {\bfseries std\+\_\+dev}
+\item 
+\mbox{\Hypertarget{class_time_series_ab6f7818746f7178a4be203fd8add0daa}\label{class_time_series_ab6f7818746f7178a4be203fd8add0daa}} 
+double {\bfseries variance}
+\item 
+\mbox{\Hypertarget{class_time_series_a3aadd7d227502c90f655004014c35879}\label{class_time_series_a3aadd7d227502c90f655004014c35879}} 
+double {\bfseries min\+\_\+change}
+\item 
+\mbox{\Hypertarget{class_time_series_a44bebfe451c623358a16af4d4e2d4a38}\label{class_time_series_a44bebfe451c623358a16af4d4e2d4a38}} 
+double {\bfseries max\+\_\+change}
+\item 
+\mbox{\Hypertarget{class_time_series_a18f879a5a1d1b4efd3ed3063b1d6bf17}\label{class_time_series_a18f879a5a1d1b4efd3ed3063b1d6bf17}} 
+\textbf{ vector}$<$ double $>$ {\bfseries values}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+time\+\_\+series/time\+\_\+series.\+hxx\item 
+time\+\_\+series/time\+\_\+series.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_time_series_set.tex b/docs/latex/class_time_series_set.tex
new file mode 100644
index 00000000..d2f8a5e7
--- /dev/null
+++ b/docs/latex/class_time_series_set.tex
@@ -0,0 +1,113 @@
+\hypertarget{class_time_series_set}{}\doxysection{Time\+Series\+Set Class Reference}
+\label{class_time_series_set}\index{TimeSeriesSet@{TimeSeriesSet}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_time_series_set_a755abcf37b7074e042e88f1110911bde}\label{class_time_series_set_a755abcf37b7074e042e88f1110911bde}} 
+{\bfseries Time\+Series\+Set} (\textbf{ string} \+\_\+filename, const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+fields)
+\item 
+\mbox{\Hypertarget{class_time_series_set_aacbb4f17ae19d87e33d14da1eadd9e1c}\label{class_time_series_set_aacbb4f17ae19d87e33d14da1eadd9e1c}} 
+void {\bfseries add\+\_\+time\+\_\+series} (\textbf{ string} name)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a8cb306ad530c7fd6d5ac2a46e0a2e380}\label{class_time_series_set_a8cb306ad530c7fd6d5ac2a46e0a2e380}} 
+int {\bfseries get\+\_\+number\+\_\+rows} () const
+\item 
+\mbox{\Hypertarget{class_time_series_set_ac1c657e69b5b9cfe2d556e57eaf0a97c}\label{class_time_series_set_ac1c657e69b5b9cfe2d556e57eaf0a97c}} 
+int {\bfseries get\+\_\+number\+\_\+columns} () const
+\item 
+\mbox{\Hypertarget{class_time_series_set_a09e2668a0f2e47d0542ad0d0600050fc}\label{class_time_series_set_a09e2668a0f2e47d0542ad0d0600050fc}} 
+\textbf{ string} {\bfseries get\+\_\+filename} () const
+\item 
+\mbox{\Hypertarget{class_time_series_set_a3e3ef7b133e911ae4fc9bf9f273f7b37}\label{class_time_series_set_a3e3ef7b133e911ae4fc9bf9f273f7b37}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries get\+\_\+fields} () const
+\item 
+\mbox{\Hypertarget{class_time_series_set_a389df753e39d4061306f6e194139537f}\label{class_time_series_set_a389df753e39d4061306f6e194139537f}} 
+void {\bfseries get\+\_\+series} (\textbf{ string} field\+\_\+name, \textbf{ vector}$<$ double $>$ \&series)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a01c4671a033ea5796718106a76f9f532}\label{class_time_series_set_a01c4671a033ea5796718106a76f9f532}} 
+double {\bfseries get\+\_\+min} (\textbf{ string} field)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a457d0766952cd6403105fbfb468dd8b4}\label{class_time_series_set_a457d0766952cd6403105fbfb468dd8b4}} 
+double {\bfseries get\+\_\+average} (\textbf{ string} field)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a25ffdd437ba30df4953206f0554cb5a9}\label{class_time_series_set_a25ffdd437ba30df4953206f0554cb5a9}} 
+double {\bfseries get\+\_\+max} (\textbf{ string} field)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a8d55aa333f30f362a2f4074f48d2690a}\label{class_time_series_set_a8d55aa333f30f362a2f4074f48d2690a}} 
+double {\bfseries get\+\_\+std\+\_\+dev} (\textbf{ string} field)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a6185f4f4193eb125c9814608aab8f743}\label{class_time_series_set_a6185f4f4193eb125c9814608aab8f743}} 
+double {\bfseries get\+\_\+variance} (\textbf{ string} field)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a0b39178fddc2bf0e2ba66b2e2025161e}\label{class_time_series_set_a0b39178fddc2bf0e2ba66b2e2025161e}} 
+double {\bfseries get\+\_\+min\+\_\+change} (\textbf{ string} field)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a4db801d1a487c0f6f025b1523a42b9a4}\label{class_time_series_set_a4db801d1a487c0f6f025b1523a42b9a4}} 
+double {\bfseries get\+\_\+max\+\_\+change} (\textbf{ string} field)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a47eecbd2fcfc2733ea6e8c6b236fbb03}\label{class_time_series_set_a47eecbd2fcfc2733ea6e8c6b236fbb03}} 
+double {\bfseries get\+\_\+correlation} (\textbf{ string} field1, \textbf{ string} field2, \textbf{ int32\+\_\+t} lag) const
+\item 
+\mbox{\Hypertarget{class_time_series_set_a6d800188060b9d30a1c6dd2100a05423}\label{class_time_series_set_a6d800188060b9d30a1c6dd2100a05423}} 
+void {\bfseries normalize\+\_\+min\+\_\+max} (\textbf{ string} field, double min, double max)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a183ed4556eea1c313c4ab50d9dde251c}\label{class_time_series_set_a183ed4556eea1c313c4ab50d9dde251c}} 
+void {\bfseries normalize\+\_\+avg\+\_\+std\+\_\+dev} (\textbf{ string} field, double avg, double std\+\_\+dev, double norm\+\_\+max)
+\item 
+\mbox{\Hypertarget{class_time_series_set_aa55e6945dfc550f36fab50178dc06ffe}\label{class_time_series_set_aa55e6945dfc550f36fab50178dc06ffe}} 
+void {\bfseries export\+\_\+time\+\_\+series} (\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&data)
+\item 
+\mbox{\Hypertarget{class_time_series_set_af91af3295680f6596fc68eb10c2a7845}\label{class_time_series_set_af91af3295680f6596fc68eb10c2a7845}} 
+void {\bfseries export\+\_\+time\+\_\+series} (\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&data, const \textbf{ vector}$<$ \textbf{ string} $>$ \&requested\+\_\+fields)
+\item 
+void \mbox{\hyperlink{class_time_series_set_ad85e413579132f448ec10545f733d452}{export\+\_\+time\+\_\+series}} (\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&data, const \textbf{ vector}$<$ \textbf{ string} $>$ \&requested\+\_\+fields, const \textbf{ vector}$<$ \textbf{ string} $>$ \&shift\+\_\+fields, \textbf{ int32\+\_\+t} time\+\_\+offset)
+\begin{DoxyCompactList}\small\item\em Time offset $<$ 0 generates input data. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_time_series_set_aec44a37363eaecc446c81b58cb44781b}\label{class_time_series_set_aec44a37363eaecc446c81b58cb44781b}} 
+\mbox{\hyperlink{class_time_series_set}{Time\+Series\+Set}} $\ast$ {\bfseries copy} ()
+\item 
+\mbox{\Hypertarget{class_time_series_set_a04988df43c793bdf97f9d2d94ca40b74}\label{class_time_series_set_a04988df43c793bdf97f9d2d94ca40b74}} 
+void {\bfseries cut} (\textbf{ int32\+\_\+t} start, \textbf{ int32\+\_\+t} stop)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a9e5eff858b9fb54cff400103e47932af}\label{class_time_series_set_a9e5eff858b9fb54cff400103e47932af}} 
+void {\bfseries split} (int slices, \textbf{ vector}$<$ \mbox{\hyperlink{class_time_series_set}{Time\+Series\+Set}} $\ast$ $>$ \&sub\+\_\+series)
+\item 
+\mbox{\Hypertarget{class_time_series_set_a4c775dbf6a7d679b812f74582db413c4}\label{class_time_series_set_a4c775dbf6a7d679b812f74582db413c4}} 
+void {\bfseries select\+\_\+parameters} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&parameter\+\_\+names)
+\item 
+\mbox{\Hypertarget{class_time_series_set_aa52318fd9b6ae2c91e4bbd0c73901b92}\label{class_time_series_set_aa52318fd9b6ae2c91e4bbd0c73901b92}} 
+void {\bfseries select\+\_\+parameters} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&output\+\_\+parameter\+\_\+names)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_time_series_set_a03997d74a405f641741509f14d3adfa5}\label{class_time_series_set_a03997d74a405f641741509f14d3adfa5}} 
+int {\bfseries number\+\_\+rows}
+\item 
+\mbox{\Hypertarget{class_time_series_set_a92f2df07d70032d4bf466011583f8fbb}\label{class_time_series_set_a92f2df07d70032d4bf466011583f8fbb}} 
+\textbf{ string} {\bfseries filename}
+\item 
+\mbox{\Hypertarget{class_time_series_set_ae82ba27c516b80c9f581dc61298cdf09}\label{class_time_series_set_ae82ba27c516b80c9f581dc61298cdf09}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries fields}
+\item 
+\mbox{\Hypertarget{class_time_series_set_a3a63032b26d8ace6e9ab5f9ea1e0acff}\label{class_time_series_set_a3a63032b26d8ace6e9ab5f9ea1e0acff}} 
+\textbf{ map}$<$ \textbf{ string}, \mbox{\hyperlink{class_time_series}{Time\+Series}} $\ast$ $>$ {\bfseries time\+\_\+series}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{class_time_series_set_ad85e413579132f448ec10545f733d452}\label{class_time_series_set_ad85e413579132f448ec10545f733d452}} 
+\index{TimeSeriesSet@{TimeSeriesSet}!export\_time\_series@{export\_time\_series}}
+\index{export\_time\_series@{export\_time\_series}!TimeSeriesSet@{TimeSeriesSet}}
+\doxysubsubsection{\texorpdfstring{export\_time\_series()}{export\_time\_series()}}
+{\footnotesize\ttfamily void Time\+Series\+Set\+::export\+\_\+time\+\_\+series (\begin{DoxyParamCaption}\item[{\textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&}]{data,  }\item[{const \textbf{ vector}$<$ \textbf{ string} $>$ \&}]{requested\+\_\+fields,  }\item[{const \textbf{ vector}$<$ \textbf{ string} $>$ \&}]{shift\+\_\+fields,  }\item[{\textbf{ int32\+\_\+t}}]{time\+\_\+offset }\end{DoxyParamCaption})}
+
+
+
+Time offset $<$ 0 generates input data. 
+
+Do not use the last $<$time\+\_\+offset$>$ values Time offset $>$ 0 generates output data. Do not use the first $<$time\+\_\+offset$>$ values 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+time\+\_\+series/time\+\_\+series.\+hxx\item 
+time\+\_\+series/time\+\_\+series.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_time_series_sets.tex b/docs/latex/class_time_series_sets.tex
new file mode 100644
index 00000000..a92aa8cb
--- /dev/null
+++ b/docs/latex/class_time_series_sets.tex
@@ -0,0 +1,149 @@
+\hypertarget{class_time_series_sets}{}\doxysection{Time\+Series\+Sets Class Reference}
+\label{class_time_series_sets}\index{TimeSeriesSets@{TimeSeriesSets}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_ae456b414586be2e6c2f634b2583f8a1e}\label{class_time_series_sets_ae456b414586be2e6c2f634b2583f8a1e}} 
+void {\bfseries normalize\+\_\+min\+\_\+max} ()
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a3f2ccab1a21a91c64fc3606da7656262}\label{class_time_series_sets_a3f2ccab1a21a91c64fc3606da7656262}} 
+void {\bfseries normalize\+\_\+min\+\_\+max} (const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+mins, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+maxs)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a1ff984d07a5531d1781832d57376fd05}\label{class_time_series_sets_a1ff984d07a5531d1781832d57376fd05}} 
+void {\bfseries normalize\+\_\+avg\+\_\+std\+\_\+dev} ()
+\item 
+\mbox{\Hypertarget{class_time_series_sets_ad2acd60c0e4b224fcddd42f982f2e7f7}\label{class_time_series_sets_ad2acd60c0e4b224fcddd42f982f2e7f7}} 
+void {\bfseries normalize\+\_\+avg\+\_\+std\+\_\+dev} (const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+avgs, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+std\+\_\+devs, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+mins, const \textbf{ map}$<$ \textbf{ string}, double $>$ \&\+\_\+normalize\+\_\+maxs)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_aa405fa31b79ed889be2fc42fd847703f}\label{class_time_series_sets_aa405fa31b79ed889be2fc42fd847703f}} 
+void {\bfseries split\+\_\+series} (int series, int number\+\_\+slices)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a25e64a6ebe99d155af40fa3c4827eee0}\label{class_time_series_sets_a25e64a6ebe99d155af40fa3c4827eee0}} 
+void {\bfseries split\+\_\+all} (int number\+\_\+slices)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a617cece27b5f4d4cea003b66fb64b2fd}\label{class_time_series_sets_a617cece27b5f4d4cea003b66fb64b2fd}} 
+void {\bfseries write\+\_\+time\+\_\+series\+\_\+sets} (\textbf{ string} base\+\_\+filename)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a5c8ac2daba0424ae774be8c9bee789b6}\label{class_time_series_sets_a5c8ac2daba0424ae774be8c9bee789b6}} 
+void \mbox{\hyperlink{class_time_series_sets_a5c8ac2daba0424ae774be8c9bee789b6}{export\+\_\+time\+\_\+series}} (const \textbf{ vector}$<$ int $>$ \&series\+\_\+indexes, int time\+\_\+offset, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\begin{DoxyCompactList}\small\item\em the series argument is a vector of indexes of the time series that was initially loaded that are to be exported \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_time_series_sets_af7b9f9319c330cb6af8475ce1c2aa545}\label{class_time_series_sets_af7b9f9319c330cb6af8475ce1c2aa545}} 
+void \mbox{\hyperlink{class_time_series_sets_af7b9f9319c330cb6af8475ce1c2aa545}{export\+\_\+training\+\_\+series}} (int time\+\_\+offset, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\begin{DoxyCompactList}\small\item\em This exports the time series marked as training series by the training\+\_\+indexes vector. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_time_series_sets_a45b61a73ae84cdafce66a10dd9930534}\label{class_time_series_sets_a45b61a73ae84cdafce66a10dd9930534}} 
+void \mbox{\hyperlink{class_time_series_sets_a45b61a73ae84cdafce66a10dd9930534}{export\+\_\+test\+\_\+series}} (int time\+\_\+offset, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&inputs, \textbf{ vector}$<$ \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ $>$ \&outputs)
+\begin{DoxyCompactList}\small\item\em This exports the time series marked as test series by the test\+\_\+indexes vector. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_time_series_sets_a2ee946c4092fa81d3dc2cbf4c65b3388}\label{class_time_series_sets_a2ee946c4092fa81d3dc2cbf4c65b3388}} 
+void \mbox{\hyperlink{class_time_series_sets_a2ee946c4092fa81d3dc2cbf4c65b3388}{export\+\_\+series\+\_\+by\+\_\+name}} (\textbf{ string} field\+\_\+name, \textbf{ vector}$<$ \textbf{ vector}$<$ double $>$ $>$ \&exported\+\_\+series)
+\begin{DoxyCompactList}\small\item\em This exports from all the loaded time series a particular column. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_time_series_sets_af076b335af2db7a42b0f7c08048254be}\label{class_time_series_sets_af076b335af2db7a42b0f7c08048254be}} 
+double {\bfseries denormalize} (\textbf{ string} field\+\_\+name, double value)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_ac4aae5727651a769f4959898556004a0}\label{class_time_series_sets_ac4aae5727651a769f4959898556004a0}} 
+\textbf{ string} {\bfseries get\+\_\+normalize\+\_\+type} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a7937d3649074b8a4cddc89f647435109}\label{class_time_series_sets_a7937d3649074b8a4cddc89f647435109}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+mins} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a58557834abac1950e724b3ac784f7b26}\label{class_time_series_sets_a58557834abac1950e724b3ac784f7b26}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+maxs} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a4634322f77e316c48a1169087ebc92a3}\label{class_time_series_sets_a4634322f77e316c48a1169087ebc92a3}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+avgs} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a65e823539a16e15764ed09b9ee10867f}\label{class_time_series_sets_a65e823539a16e15764ed09b9ee10867f}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries get\+\_\+normalize\+\_\+std\+\_\+devs} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a3c957f47e5521db72d60afdfc79e499b}\label{class_time_series_sets_a3c957f47e5521db72d60afdfc79e499b}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries get\+\_\+input\+\_\+parameter\+\_\+names} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a7bab02c0f71aeace479ec18d7345e9f2}\label{class_time_series_sets_a7bab02c0f71aeace479ec18d7345e9f2}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries get\+\_\+output\+\_\+parameter\+\_\+names} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_afaaadcc2ee84b7f92e5e8d58a9068194}\label{class_time_series_sets_afaaadcc2ee84b7f92e5e8d58a9068194}} 
+int {\bfseries get\+\_\+number\+\_\+series} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a9486228ab9068dfd7715f212b10a9fbe}\label{class_time_series_sets_a9486228ab9068dfd7715f212b10a9fbe}} 
+int {\bfseries get\+\_\+number\+\_\+inputs} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a0dfdafcceb83a78eaf93822d37437f33}\label{class_time_series_sets_a0dfdafcceb83a78eaf93822d37437f33}} 
+int {\bfseries get\+\_\+number\+\_\+outputs} () const
+\item 
+\mbox{\Hypertarget{class_time_series_sets_ad5fea4bb76a25f3ea308624ac0e3ca44}\label{class_time_series_sets_ad5fea4bb76a25f3ea308624ac0e3ca44}} 
+void {\bfseries set\+\_\+training\+\_\+indexes} (const \textbf{ vector}$<$ int $>$ \&\+\_\+training\+\_\+indexes)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_aed2bb887ccf5ce0c5d11f3383d6d59cc}\label{class_time_series_sets_aed2bb887ccf5ce0c5d11f3383d6d59cc}} 
+void {\bfseries set\+\_\+test\+\_\+indexes} (const \textbf{ vector}$<$ int $>$ \&\+\_\+test\+\_\+indexes)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_ac86cd7b9273e43b5196afc28140adfa9}\label{class_time_series_sets_ac86cd7b9273e43b5196afc28140adfa9}} 
+\mbox{\hyperlink{class_time_series_set}{Time\+Series\+Set}} $\ast$ {\bfseries get\+\_\+set} (\textbf{ int32\+\_\+t} i)
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_af663701925511022ae92705c35737941}\label{class_time_series_sets_af663701925511022ae92705c35737941}} 
+static void {\bfseries help\+\_\+message} ()
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a9322d26a76489031372e39a0b45fb50b}\label{class_time_series_sets_a9322d26a76489031372e39a0b45fb50b}} 
+static \mbox{\hyperlink{class_time_series_sets}{Time\+Series\+Sets}} $\ast$ {\bfseries generate\+\_\+from\+\_\+arguments} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&arguments)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a32a39bf724151744d77dedbcb14b8fee}\label{class_time_series_sets_a32a39bf724151744d77dedbcb14b8fee}} 
+static \mbox{\hyperlink{class_time_series_sets}{Time\+Series\+Sets}} $\ast$ {\bfseries generate\+\_\+test} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+test\+\_\+filenames, const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+input\+\_\+parameter\+\_\+names, const \textbf{ vector}$<$ \textbf{ string} $>$ \&\+\_\+output\+\_\+parameter\+\_\+names)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a06214294f4a8b5dabca2565b47906b81}\label{class_time_series_sets_a06214294f4a8b5dabca2565b47906b81}} 
+void {\bfseries parse\+\_\+parameters\+\_\+string} (const \textbf{ vector}$<$ \textbf{ string} $>$ \&p)
+\item 
+\mbox{\Hypertarget{class_time_series_sets_aad6705cac0f8b4dc4b862aa5f24aa04d}\label{class_time_series_sets_aad6705cac0f8b4dc4b862aa5f24aa04d}} 
+void {\bfseries load\+\_\+time\+\_\+series} ()
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a8f8134e3f847c2b9891b9eb64757b83a}\label{class_time_series_sets_a8f8134e3f847c2b9891b9eb64757b83a}} 
+\textbf{ string} {\bfseries normalize\+\_\+type}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a280d5aaeecc89dda6f589349eda36bd6}\label{class_time_series_sets_a280d5aaeecc89dda6f589349eda36bd6}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries filenames}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a5aa9e8c442fa1154fc8acb4faa3e97fb}\label{class_time_series_sets_a5aa9e8c442fa1154fc8acb4faa3e97fb}} 
+\textbf{ vector}$<$ int $>$ {\bfseries training\+\_\+indexes}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_af4b1224bc44b47bdc95d5b406c13c8e9}\label{class_time_series_sets_af4b1224bc44b47bdc95d5b406c13c8e9}} 
+\textbf{ vector}$<$ int $>$ {\bfseries test\+\_\+indexes}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_afe48a73b7019701cde5ad78b8aae3ed9}\label{class_time_series_sets_afe48a73b7019701cde5ad78b8aae3ed9}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries input\+\_\+parameter\+\_\+names}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a6e23f09d03dea1d2c1ceb24afd3fb463}\label{class_time_series_sets_a6e23f09d03dea1d2c1ceb24afd3fb463}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries output\+\_\+parameter\+\_\+names}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_ad7303b25502ed6d485135e6b7eaae985}\label{class_time_series_sets_ad7303b25502ed6d485135e6b7eaae985}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries shift\+\_\+parameter\+\_\+names}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a3d34c7d1dbf0f030b95cd93237613468}\label{class_time_series_sets_a3d34c7d1dbf0f030b95cd93237613468}} 
+\textbf{ vector}$<$ \textbf{ string} $>$ {\bfseries all\+\_\+parameter\+\_\+names}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a789620938d75b6b289282d02bfd642e6}\label{class_time_series_sets_a789620938d75b6b289282d02bfd642e6}} 
+\textbf{ vector}$<$ \mbox{\hyperlink{class_time_series_set}{Time\+Series\+Set}} $\ast$ $>$ {\bfseries time\+\_\+series}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a074965d69cf655d2c128463ccbf5dbbc}\label{class_time_series_sets_a074965d69cf655d2c128463ccbf5dbbc}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+mins}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_ac490940078d3259eaf7daeb90f450ef3}\label{class_time_series_sets_ac490940078d3259eaf7daeb90f450ef3}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+maxs}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a1e4987999373b35ec29db9b8fee2a97f}\label{class_time_series_sets_a1e4987999373b35ec29db9b8fee2a97f}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+avgs}
+\item 
+\mbox{\Hypertarget{class_time_series_sets_a421f630f24865a13aa4d4156aa4e57c9}\label{class_time_series_sets_a421f630f24865a13aa4d4156aa4e57c9}} 
+\textbf{ map}$<$ \textbf{ string}, double $>$ {\bfseries normalize\+\_\+std\+\_\+devs}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+time\+\_\+series/time\+\_\+series.\+hxx\item 
+time\+\_\+series/time\+\_\+series.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_tracker.tex b/docs/latex/class_tracker.tex
new file mode 100644
index 00000000..2a522180
--- /dev/null
+++ b/docs/latex/class_tracker.tex
@@ -0,0 +1,47 @@
+\hypertarget{class_tracker}{}\doxysection{Tracker Class Reference}
+\label{class_tracker}\index{Tracker@{Tracker}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_tracker_a44adefce22937ea5251c59c7ffb9d7f5}\label{class_tracker_a44adefce22937ea5251c59c7ffb9d7f5}} 
+void {\bfseries track} (double value)
+\item 
+\mbox{\Hypertarget{class_tracker_a1ded60555ced24fbca35560cfae2a8df}\label{class_tracker_a1ded60555ced24fbca35560cfae2a8df}} 
+double {\bfseries min} () const
+\item 
+\mbox{\Hypertarget{class_tracker_a55975f2920140e38b0e9e767fc5f1871}\label{class_tracker_a55975f2920140e38b0e9e767fc5f1871}} 
+double {\bfseries max} () const
+\item 
+\mbox{\Hypertarget{class_tracker_a0b3af55643ec9142aea4b0953ad3767b}\label{class_tracker_a0b3af55643ec9142aea4b0953ad3767b}} 
+double {\bfseries avg} () const
+\item 
+\mbox{\Hypertarget{class_tracker_a5de9582599c863547cb34a1ed9d150cb}\label{class_tracker_a5de9582599c863547cb34a1ed9d150cb}} 
+double {\bfseries stddev} ()
+\item 
+\mbox{\Hypertarget{class_tracker_a039b206b7dce583722070db37241600f}\label{class_tracker_a039b206b7dce583722070db37241600f}} 
+double {\bfseries correlate} (\mbox{\hyperlink{class_tracker}{Tracker}} \&other)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_tracker_af9f5c0a2e8a5bed6fa229be3c8fef5ef}\label{class_tracker_af9f5c0a2e8a5bed6fa229be3c8fef5ef}} 
+int32\+\_\+t {\bfseries count}
+\item 
+\mbox{\Hypertarget{class_tracker_a83c7f3040df1f6c1ed0719dc31735fc9}\label{class_tracker_a83c7f3040df1f6c1ed0719dc31735fc9}} 
+double {\bfseries \+\_\+min}
+\item 
+\mbox{\Hypertarget{class_tracker_a220aa6ee4929baa5deba932567359f8a}\label{class_tracker_a220aa6ee4929baa5deba932567359f8a}} 
+double {\bfseries sum}
+\item 
+\mbox{\Hypertarget{class_tracker_ac4bbd19641ba52bb54a38733f078c816}\label{class_tracker_ac4bbd19641ba52bb54a38733f078c816}} 
+double {\bfseries \+\_\+max}
+\item 
+\mbox{\Hypertarget{class_tracker_af52d65a6a19b69bca42d11b513463d60}\label{class_tracker_af52d65a6a19b69bca42d11b513463d60}} 
+\textbf{ vector}$<$ double $>$ {\bfseries values}
+\end{DoxyCompactItemize}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+mpi/tracker.\+hxx\item 
+mpi/tracker.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_u_g_r_n_n___node.eps b/docs/latex/class_u_g_r_n_n___node.eps
new file mode 100644
index 00000000..24fad242
--- /dev/null
+++ b/docs/latex/class_u_g_r_n_n___node.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 285.714286
+%%Pages: 0
+%%BeginSetup
+%%EndSetup
+%%EndComments
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+% ----- variables -----
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+/boxwidth 0 def
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+
+% ----- procedures -----
+
+/dotted { [1 4] 0 setdash } def
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+/solid  { [] 0 setdash } def
+
+/max % result = MAX(arg1,arg2)
+{
+  /a exch def
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+  a b gt {a} {b} ifelse
+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
+} def
+
+/box % draws a box with text 'arg1' at grid pos (arg2,arg3)
+{ gsave
+  2 setlinewidth
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+  rmoveto show stroke
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+{ newpath
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+{ newpath
+  moveto
+  3 -8 rlineto
+  -6 0 rlineto
+  3 8 rlineto
+  closepath
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+  stroke
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+
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+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
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+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
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+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul disty 2 div sub
+  /y exch def
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+
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+{
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+
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+  /ys exch def
+  /xs exch def
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+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
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+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(UGRNN_Node) cw
+(RNN_Node_Interface) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (UGRNN_Node) 0.000000 0.000000 box
+ (RNN_Node_Interface) 0.000000 1.000000 box
+
+% ----- relations -----
+
+solid
+0 0.000000 0.000000 out
+solid
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diff --git a/docs/latex/class_u_g_r_n_n___node.tex b/docs/latex/class_u_g_r_n_n___node.tex
new file mode 100644
index 00000000..813f7054
--- /dev/null
+++ b/docs/latex/class_u_g_r_n_n___node.tex
@@ -0,0 +1,138 @@
+\hypertarget{class_u_g_r_n_n___node}{}\doxysection{U\+G\+R\+N\+N\+\_\+\+Node Class Reference}
+\label{class_u_g_r_n_n___node}\index{UGRNN\_Node@{UGRNN\_Node}}
+Inheritance diagram for U\+G\+R\+N\+N\+\_\+\+Node\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{class_u_g_r_n_n___node}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a3764b899849150018680e31a6e9bcf0e}\label{class_u_g_r_n_n___node_a3764b899849150018680e31a6e9bcf0e}} 
+{\bfseries U\+G\+R\+N\+N\+\_\+\+Node} (int \+\_\+innovation\+\_\+number, int \+\_\+type, double \+\_\+depth)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a0d34661f7940c134bbfdca5a510c7285}\label{class_u_g_r_n_n___node_a0d34661f7940c134bbfdca5a510c7285}} 
+void {\bfseries initialize\+\_\+lamarckian} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double mu, double sigma)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a3422804628e03e4322e330aabc611643}\label{class_u_g_r_n_n___node_a3422804628e03e4322e330aabc611643}} 
+void {\bfseries initialize\+\_\+xavier} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng1\+\_\+1, double range)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a0023df13a9affc049ac48ee5c70f4550}\label{class_u_g_r_n_n___node_a0023df13a9affc049ac48ee5c70f4550}} 
+void {\bfseries initialize\+\_\+kaiming} (\textbf{ minstd\+\_\+rand0} \&generator, \mbox{\hyperlink{class_normal_distribution}{Normal\+Distribution}} \&normal\+\_\+distribution, double range)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a5c60b4dddfff9465a3bdd0cf38af1fc1}\label{class_u_g_r_n_n___node_a5c60b4dddfff9465a3bdd0cf38af1fc1}} 
+void {\bfseries initialize\+\_\+uniform\+\_\+random} (\textbf{ minstd\+\_\+rand0} \&generator, \textbf{ uniform\+\_\+real\+\_\+distribution}$<$ double $>$ \&rng)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_aff29e3f5a1fe8416f8f21328894b7b26}\label{class_u_g_r_n_n___node_aff29e3f5a1fe8416f8f21328894b7b26}} 
+double {\bfseries get\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a81f5d163fda9d456da8d05cf6cda6911}\label{class_u_g_r_n_n___node_a81f5d163fda9d456da8d05cf6cda6911}} 
+void {\bfseries print\+\_\+gradient} (\textbf{ string} gradient\+\_\+name)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_aa1ea29490bc1faec78fed644a878cc76}\label{class_u_g_r_n_n___node_aa1ea29490bc1faec78fed644a878cc76}} 
+void {\bfseries input\+\_\+fired} (int time, double incoming\+\_\+output)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_af4b8c24bf0e32b0edda0fef4167357ac}\label{class_u_g_r_n_n___node_af4b8c24bf0e32b0edda0fef4167357ac}} 
+void {\bfseries try\+\_\+update\+\_\+deltas} (int time)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_afa4f8c0fd55f91f5a74c69dcfb454f2f}\label{class_u_g_r_n_n___node_afa4f8c0fd55f91f5a74c69dcfb454f2f}} 
+void {\bfseries error\+\_\+fired} (int time, double error)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_ac03ea962e08046ed985aad74dea29e0d}\label{class_u_g_r_n_n___node_ac03ea962e08046ed985aad74dea29e0d}} 
+void {\bfseries output\+\_\+fired} (int time, double delta)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_acf582d77ae7bc8aaf0911e5972937a55}\label{class_u_g_r_n_n___node_acf582d77ae7bc8aaf0911e5972937a55}} 
+uint32\+\_\+t {\bfseries get\+\_\+number\+\_\+weights} () const
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_acea2de86ae7b8e7e7af366ec7eaf4b59}\label{class_u_g_r_n_n___node_acea2de86ae7b8e7e7af366ec7eaf4b59}} 
+void {\bfseries get\+\_\+weights} (\textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_acc7b262e04d47469f041b981674beae9}\label{class_u_g_r_n_n___node_acc7b262e04d47469f041b981674beae9}} 
+void {\bfseries set\+\_\+weights} (const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a4549f99ee719b51c4ede52827dbe3ef2}\label{class_u_g_r_n_n___node_a4549f99ee719b51c4ede52827dbe3ef2}} 
+void {\bfseries get\+\_\+weights} (uint32\+\_\+t \&offset, \textbf{ vector}$<$ double $>$ \&parameters) const
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_adbef72dd872d81476b4b75dca8dc3ad8}\label{class_u_g_r_n_n___node_adbef72dd872d81476b4b75dca8dc3ad8}} 
+void {\bfseries set\+\_\+weights} (uint32\+\_\+t \&offset, const \textbf{ vector}$<$ double $>$ \&parameters)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a85a3fbc682e58a0b0bb801d3808e5898}\label{class_u_g_r_n_n___node_a85a3fbc682e58a0b0bb801d3808e5898}} 
+void {\bfseries get\+\_\+gradients} (\textbf{ vector}$<$ double $>$ \&gradients)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a04d8d2fec656055b08f33dd25ceebb3e}\label{class_u_g_r_n_n___node_a04d8d2fec656055b08f33dd25ceebb3e}} 
+void {\bfseries reset} (int \+\_\+series\+\_\+length)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a413dbf93f5df0fccd811776a4d59d6c5}\label{class_u_g_r_n_n___node_a413dbf93f5df0fccd811776a4d59d6c5}} 
+void {\bfseries write\+\_\+to\+\_\+stream} (\textbf{ ostream} \&out)
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_adad5484b602d84d3a6bd2fc56d8f6084}\label{class_u_g_r_n_n___node_adad5484b602d84d3a6bd2fc56d8f6084}} 
+\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$ {\bfseries copy} () const
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a106b71a4e6d4e9cb7fc822f4a613775a}\label{class_u_g_r_n_n___node_a106b71a4e6d4e9cb7fc822f4a613775a}} 
+double {\bfseries cw}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_abed2f8cb96bb68424b291054b0a3fa35}\label{class_u_g_r_n_n___node_abed2f8cb96bb68424b291054b0a3fa35}} 
+double {\bfseries ch}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a456763cc730fe9051b0e8f5adda23dd7}\label{class_u_g_r_n_n___node_a456763cc730fe9051b0e8f5adda23dd7}} 
+double {\bfseries c\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a458667ece307ba918ba01c4d5c0b0c6b}\label{class_u_g_r_n_n___node_a458667ece307ba918ba01c4d5c0b0c6b}} 
+double {\bfseries gw}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_ae593589458b7db43bacbbb9d49f047b3}\label{class_u_g_r_n_n___node_ae593589458b7db43bacbbb9d49f047b3}} 
+double {\bfseries gh}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_aec5c89dbeb655ed24b21669e1e878148}\label{class_u_g_r_n_n___node_aec5c89dbeb655ed24b21669e1e878148}} 
+double {\bfseries g\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_acddc55613b2cbad64b0830a6f902ec25}\label{class_u_g_r_n_n___node_acddc55613b2cbad64b0830a6f902ec25}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+cw}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a666c4b51b2f8cfd9d9399e4a4ec27996}\label{class_u_g_r_n_n___node_a666c4b51b2f8cfd9d9399e4a4ec27996}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+ch}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_ad8c5949d7e82697e96737ac3d6c1c327}\label{class_u_g_r_n_n___node_ad8c5949d7e82697e96737ac3d6c1c327}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+c\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_ad6c348abba03d5be3850917fe075c33b}\label{class_u_g_r_n_n___node_ad6c348abba03d5be3850917fe075c33b}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+gw}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a02a0996f26b3a689643f3655cc28f5c8}\label{class_u_g_r_n_n___node_a02a0996f26b3a689643f3655cc28f5c8}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+gh}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_afc5a04c0d80e76a37dfdb39a2201d34d}\label{class_u_g_r_n_n___node_afc5a04c0d80e76a37dfdb39a2201d34d}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+g\+\_\+bias}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_abec1ce5838aaaf8ec513b9046d86116a}\label{class_u_g_r_n_n___node_abec1ce5838aaaf8ec513b9046d86116a}} 
+\textbf{ vector}$<$ double $>$ {\bfseries d\+\_\+h\+\_\+prev}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_aafa20e55d19b06bd9612590d4a6b32af}\label{class_u_g_r_n_n___node_aafa20e55d19b06bd9612590d4a6b32af}} 
+\textbf{ vector}$<$ double $>$ {\bfseries c}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a9cfec643c41dca9c00af8569117e4c15}\label{class_u_g_r_n_n___node_a9cfec643c41dca9c00af8569117e4c15}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+c}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_ac523ab0bc693a7e99f1e54827a3208a6}\label{class_u_g_r_n_n___node_ac523ab0bc693a7e99f1e54827a3208a6}} 
+\textbf{ vector}$<$ double $>$ {\bfseries g}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a25a0e594c49fcf60bfea66530cfc374c}\label{class_u_g_r_n_n___node_a25a0e594c49fcf60bfea66530cfc374c}} 
+\textbf{ vector}$<$ double $>$ {\bfseries ld\+\_\+g}
+\end{DoxyCompactItemize}
+\doxysubsection*{Friends}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_u_g_r_n_n___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}\label{class_u_g_r_n_n___node_a6ed93c885e63e64a8aa0ab2b7f637f0e}} 
+class {\bfseries R\+N\+N\+\_\+\+Edge}
+\end{DoxyCompactItemize}
+\doxysubsection*{Additional Inherited Members}
+
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+rnn/ugrnn\+\_\+node.\+hxx\item 
+rnn/ugrnn\+\_\+node.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/class_word_series.tex b/docs/latex/class_word_series.tex
new file mode 100644
index 00000000..e0b19115
--- /dev/null
+++ b/docs/latex/class_word_series.tex
@@ -0,0 +1,158 @@
+\hypertarget{class_word_series}{}\doxysection{Word\+Series Class Reference}
+\label{class_word_series}\index{WordSeries@{WordSeries}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{class_word_series_ad0632eb627c4275f0c01877084a265d3}\label{class_word_series_ad0632eb627c4275f0c01877084a265d3}} 
+{\bfseries Word\+Series} (\textbf{ string} \+\_\+name)
+\item 
+\mbox{\Hypertarget{class_word_series_ac40abcdb2bf29aac109e4663590697cd}\label{class_word_series_ac40abcdb2bf29aac109e4663590697cd}} 
+void {\bfseries add\+\_\+value} (double value)
+\item 
+\mbox{\Hypertarget{class_word_series_a6b53ae1e5b35716ad4f905b1eb6d665c}\label{class_word_series_a6b53ae1e5b35716ad4f905b1eb6d665c}} 
+double {\bfseries get\+\_\+value} (int i)
+\item 
+\mbox{\Hypertarget{class_word_series_af40e1cae4cecb85c62a95f96443ebd5a}\label{class_word_series_af40e1cae4cecb85c62a95f96443ebd5a}} 
+void {\bfseries calculate\+\_\+statistics} ()
+\item 
+\mbox{\Hypertarget{class_word_series_af0641d8c6f711ebd3de17507b67997d1}\label{class_word_series_af0641d8c6f711ebd3de17507b67997d1}} 
+void {\bfseries print\+\_\+statistics} ()
+\item 
+\mbox{\Hypertarget{class_word_series_a828c95b1330e9327a207949560885af1}\label{class_word_series_a828c95b1330e9327a207949560885af1}} 
+int {\bfseries get\+\_\+number\+\_\+values} () const
+\item 
+\mbox{\Hypertarget{class_word_series_a741c2546aa8b032570813b5c6ee137a8}\label{class_word_series_a741c2546aa8b032570813b5c6ee137a8}} 
+double {\bfseries get\+\_\+min} () const
+\item 
+\mbox{\Hypertarget{class_word_series_abe65b98aea1f4f78e4e55fe8ce6735e3}\label{class_word_series_abe65b98aea1f4f78e4e55fe8ce6735e3}} 
+double {\bfseries get\+\_\+average} () const
+\item 
+\mbox{\Hypertarget{class_word_series_ac00878158175877d31997cd5cd271198}\label{class_word_series_ac00878158175877d31997cd5cd271198}} 
+double {\bfseries get\+\_\+max} () const
+\item 
+\mbox{\Hypertarget{class_word_series_a73c60c775afb633cd34064860dbd6d4a}\label{class_word_series_a73c60c775afb633cd34064860dbd6d4a}} 
+double {\bfseries get\+\_\+std\+\_\+dev} () const
+\item 
+\mbox{\Hypertarget{class_word_series_a175cd6233bb96f88779a22223a819d2d}\label{class_word_series_a175cd6233bb96f88779a22223a819d2d}} 
+double {\bfseries get\+\_\+variance} () const
+\item 
+\mbox{\Hypertarget{class_word_series_a8d1197bee0719710feb3a4cc0558c7bb}\label{class_word_series_a8d1197bee0719710feb3a4cc0558c7bb}} 
+double {\bfseries get\+\_\+min\+\_\+change} () const
+\item 
+\mbox{\Hypertarget{class_word_series_ae0c1de06176025d5f8d5460391f5bbcf}\label{class_word_series_ae0c1de06176025d5f8d5460391f5bbcf}} 
+double {\bfseries get\+\_\+max\+\_\+change} () const
+\item 
+\mbox{\Hypertarget{class_word_series_a2019e6699fc8eb8b18439bdb38a18ed6}\label{class_word_series_a2019e6699fc8eb8b18439bdb38a18ed6}} 
+void {\bfseries normalize\+\_\+min\+\_\+max} (double \mbox{\hyperlink{class_word_series_a93302deb50a92c6aa6f7b2d8da29fee5}{min}}, double \mbox{\hyperlink{class_word_series_ab61bb7ef53fe10c4ef2077ad70700c25}{max}})
+\item 
+\mbox{\Hypertarget{class_word_series_ab45a95958471a4255ad7ecf990ab2cd3}\label{class_word_series_ab45a95958471a4255ad7ecf990ab2cd3}} 
+void {\bfseries normalize\+\_\+avg\+\_\+std\+\_\+dev} (double avg, double \mbox{\hyperlink{class_word_series_a6902b4c4b6bb2f865a59e4c5e27d7f18}{std\+\_\+dev}}, double norm\+\_\+max)
+\item 
+\mbox{\Hypertarget{class_word_series_a89582ef3e5cd7a9fb39ac37e629b0287}\label{class_word_series_a89582ef3e5cd7a9fb39ac37e629b0287}} 
+void {\bfseries cut} (\textbf{ int32\+\_\+t} start, \textbf{ int32\+\_\+t} stop)
+\item 
+\mbox{\Hypertarget{class_word_series_ae940ee5743cacb86076aac66f6010fa8}\label{class_word_series_ae940ee5743cacb86076aac66f6010fa8}} 
+double {\bfseries get\+\_\+correlation} (const \mbox{\hyperlink{class_word_series}{Word\+Series}} $\ast$other, \textbf{ int32\+\_\+t} lag) const
+\item 
+\mbox{\Hypertarget{class_word_series_a39fe4ada8a08d95968e4b4e00665a78b}\label{class_word_series_a39fe4ada8a08d95968e4b4e00665a78b}} 
+\mbox{\hyperlink{class_word_series}{Word\+Series}} $\ast$ {\bfseries copy} ()
+\item 
+\mbox{\Hypertarget{class_word_series_aab0949df22d0b2caad5ee6885a196180}\label{class_word_series_aab0949df22d0b2caad5ee6885a196180}} 
+void {\bfseries copy\+\_\+values} (\textbf{ vector}$<$ double $>$ \&series)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\textbf{ string} \mbox{\hyperlink{class_word_series_ad40f74a195876908084a743b66c7b208}{name}}
+\begin{DoxyCompactList}\small\item\em Specifies the string name in the data. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_word_series_a0db2200d32c40a69f28f55457d05afac}\label{class_word_series_a0db2200d32c40a69f28f55457d05afac}} 
+int \mbox{\hyperlink{class_word_series_a0db2200d32c40a69f28f55457d05afac}{vocab\+\_\+size}}
+\begin{DoxyCompactList}\small\item\em Specifies the number of the unique strings in the dataset. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_word_series_a93302deb50a92c6aa6f7b2d8da29fee5}{min}}
+\begin{DoxyCompactList}\small\item\em Specifies the minimum of the word series in a particular string. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_word_series_a3422e982c01b71612924ac5f1f0d2181}{average}}
+\begin{DoxyCompactList}\small\item\em Specifies the average of the word series in a particular string. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_word_series_ab61bb7ef53fe10c4ef2077ad70700c25}{max}}
+\begin{DoxyCompactList}\small\item\em Specifies the maximum of the word series in a particular string. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_word_series_a6902b4c4b6bb2f865a59e4c5e27d7f18}{std\+\_\+dev}}
+\begin{DoxyCompactList}\small\item\em Specifies the std. \end{DoxyCompactList}\item 
+double \mbox{\hyperlink{class_word_series_ad1b8dc0e4f367bf0aa4a46ddb114f8c0}{variance}}
+\begin{DoxyCompactList}\small\item\em Specifies the variance of the word series in a particular string. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{class_word_series_a56eeff54503c725b99284c6524f704a0}\label{class_word_series_a56eeff54503c725b99284c6524f704a0}} 
+double {\bfseries min\+\_\+change}
+\item 
+\mbox{\Hypertarget{class_word_series_a9aee1f87534f0fff5c814afb122b69d0}\label{class_word_series_a9aee1f87534f0fff5c814afb122b69d0}} 
+double {\bfseries max\+\_\+change}
+\item 
+\mbox{\Hypertarget{class_word_series_aed7840684ce132999a2d34a7e26dcd97}\label{class_word_series_aed7840684ce132999a2d34a7e26dcd97}} 
+\textbf{ vector}$<$ double $>$ \mbox{\hyperlink{class_word_series_aed7840684ce132999a2d34a7e26dcd97}{values}}
+\begin{DoxyCompactList}\small\item\em Storers the values in the word series respective of the time in a particular string. \end{DoxyCompactList}\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{class_word_series_a3422e982c01b71612924ac5f1f0d2181}\label{class_word_series_a3422e982c01b71612924ac5f1f0d2181}} 
+\index{WordSeries@{WordSeries}!average@{average}}
+\index{average@{average}!WordSeries@{WordSeries}}
+\doxysubsubsection{\texorpdfstring{average}{average}}
+{\footnotesize\ttfamily double Word\+Series\+::average\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies the average of the word series in a particular string. 
+
+This tells about the words which are used the most. \mbox{\Hypertarget{class_word_series_ab61bb7ef53fe10c4ef2077ad70700c25}\label{class_word_series_ab61bb7ef53fe10c4ef2077ad70700c25}} 
+\index{WordSeries@{WordSeries}!max@{max}}
+\index{max@{max}!WordSeries@{WordSeries}}
+\doxysubsubsection{\texorpdfstring{max}{max}}
+{\footnotesize\ttfamily double Word\+Series\+::max\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies the maximum of the word series in a particular string. 
+
+This could be 0 or 1 \mbox{\Hypertarget{class_word_series_a93302deb50a92c6aa6f7b2d8da29fee5}\label{class_word_series_a93302deb50a92c6aa6f7b2d8da29fee5}} 
+\index{WordSeries@{WordSeries}!min@{min}}
+\index{min@{min}!WordSeries@{WordSeries}}
+\doxysubsubsection{\texorpdfstring{min}{min}}
+{\footnotesize\ttfamily double Word\+Series\+::min\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies the minimum of the word series in a particular string. 
+
+This could be 0 or 1 \mbox{\Hypertarget{class_word_series_ad40f74a195876908084a743b66c7b208}\label{class_word_series_ad40f74a195876908084a743b66c7b208}} 
+\index{WordSeries@{WordSeries}!name@{name}}
+\index{name@{name}!WordSeries@{WordSeries}}
+\doxysubsubsection{\texorpdfstring{name}{name}}
+{\footnotesize\ttfamily \textbf{ string} Word\+Series\+::name\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies the string name in the data. 
+
+All the unique strings in the datasets will have its each word series. \mbox{\Hypertarget{class_word_series_a6902b4c4b6bb2f865a59e4c5e27d7f18}\label{class_word_series_a6902b4c4b6bb2f865a59e4c5e27d7f18}} 
+\index{WordSeries@{WordSeries}!std\_dev@{std\_dev}}
+\index{std\_dev@{std\_dev}!WordSeries@{WordSeries}}
+\doxysubsubsection{\texorpdfstring{std\_dev}{std\_dev}}
+{\footnotesize\ttfamily double Word\+Series\+::std\+\_\+dev\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies the std. 
+
+deviation of the word series in a particular string. \mbox{\Hypertarget{class_word_series_ad1b8dc0e4f367bf0aa4a46ddb114f8c0}\label{class_word_series_ad1b8dc0e4f367bf0aa4a46ddb114f8c0}} 
+\index{WordSeries@{WordSeries}!variance@{variance}}
+\index{variance@{variance}!WordSeries@{WordSeries}}
+\doxysubsubsection{\texorpdfstring{variance}{variance}}
+{\footnotesize\ttfamily double Word\+Series\+::variance\hspace{0.3cm}{\ttfamily [private]}}
+
+
+
+Specifies the variance of the word series in a particular string. 
+
+This tells about the closeness of a word in the dataset. 
+
+The documentation for this class was generated from the following files\+:\begin{DoxyCompactItemize}
+\item 
+word\+\_\+series/word\+\_\+series.\+hxx\item 
+word\+\_\+series/word\+\_\+series.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/classconfig__to__arg_1_1_config_to_arg.eps b/docs/latex/classconfig__to__arg_1_1_config_to_arg.eps
new file mode 100644
index 00000000..30e614c8
--- /dev/null
+++ b/docs/latex/classconfig__to__arg_1_1_config_to_arg.eps
@@ -0,0 +1,197 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 229.885057
+%%Pages: 0
+%%BeginSetup
+%%EndSetup
+%%EndComments
+
+% ----- variables -----
+
+/boxwidth 0 def
+/boxheight 40 def
+/fontheight 24 def
+/marginwidth 10 def
+/distx 20 def
+/disty 40 def
+/boundaspect 2.175000 def  % aspect ratio of the BoundingBox (width/height)
+/boundx 500 def
+/boundy boundx boundaspect div def
+/xspacing 0 def
+/yspacing 0 def
+/rows 2 def
+/cols 1 def
+/scalefactor 0 def
+/boxfont /Times-Roman findfont fontheight scalefont def
+
+% ----- procedures -----
+
+/dotted { [1 4] 0 setdash } def
+/dashed { [5] 0 setdash } def
+/solid  { [] 0 setdash } def
+
+/max % result = MAX(arg1,arg2)
+{
+  /a exch def
+  /b exch def
+  a b gt {a} {b} ifelse
+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
+} def
+
+/box % draws a box with text 'arg1' at grid pos (arg2,arg3)
+{ gsave
+  2 setlinewidth
+  newpath
+  exch xspacing mul xoffset add
+  exch yspacing mul
+  moveto
+  boxwidth 0 rlineto 
+  0 boxheight rlineto 
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+  closepath
+  dup stringwidth pop neg boxwidth add 2 div
+  boxheight fontheight 2 div sub 2 div
+  rmoveto show stroke
+  grestore
+} def  
+
+/mark
+{ newpath
+  exch xspacing mul xoffset add boxwidth add
+  exch yspacing mul
+  moveto
+  0 boxheight 4 div rlineto
+  boxheight neg 4 div boxheight neg 4 div rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/arrow
+{ newpath
+  moveto
+  3 -8 rlineto
+  -6 0 rlineto
+  3 8 rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/out % draws an output connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight add
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/in % draws an input connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul disty 2 div sub
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/hedge
+{
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight 2 div sub
+  /y exch def
+  /x exch def
+  newpath
+  x y moveto
+  boxwidth 2 div distx add 0 rlineto
+  stroke
+  1 eq
+  { newpath x boxwidth 2 div distx add add y moveto
+    -8 3 rlineto
+    0 -6 rlineto
+    8 3 rlineto
+    closepath
+    eofill
+    stroke
+  } if
+} def
+
+/vedge
+{
+  /ye exch def
+  /ys exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add dup
+  ys yspacing mul boxheight 2 div sub
+  moveto
+  ye yspacing mul boxheight 2 div sub
+  lineto
+  stroke
+} def
+
+/conn % connections the blocks from col 'arg1' to 'arg2' of row 'arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
+  moveto
+  xspacing xe xs sub mul 0
+  rlineto
+  stroke
+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(config_to_arg.ConfigToArg) cw
+(examm_task.ExammTask) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (config_to_arg.ConfigToArg) 0.000000 1.000000 box
+ (examm_task.ExammTask) 0.000000 0.000000 box
+
+% ----- relations -----
+
+solid
+1 0.000000 0.250000 out
+solid
+0 0.000000 0.750000 in
diff --git a/docs/latex/classconfig__to__arg_1_1_config_to_arg.tex b/docs/latex/classconfig__to__arg_1_1_config_to_arg.tex
new file mode 100644
index 00000000..a3df1379
--- /dev/null
+++ b/docs/latex/classconfig__to__arg_1_1_config_to_arg.tex
@@ -0,0 +1,69 @@
+\hypertarget{classconfig__to__arg_1_1_config_to_arg}{}\doxysection{config\+\_\+to\+\_\+arg.\+Config\+To\+Arg Class Reference}
+\label{classconfig__to__arg_1_1_config_to_arg}\index{config\_to\_arg.ConfigToArg@{config\_to\_arg.ConfigToArg}}
+Inheritance diagram for config\+\_\+to\+\_\+arg.\+Config\+To\+Arg\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{classconfig__to__arg_1_1_config_to_arg}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+def \mbox{\hyperlink{classconfig__to__arg_1_1_config_to_arg_a0423918c5ac9ce0372cc30c72ae803aa}{\+\_\+\+\_\+init\+\_\+\+\_\+}} (self, config, name, filename, config\+\_\+options=\{\}, defaults=\{\}, types=\{\}, constraints=\{\})
+\item 
+\mbox{\Hypertarget{classconfig__to__arg_1_1_config_to_arg_a24c44867bb2c637387ca4cb508b79613}\label{classconfig__to__arg_1_1_config_to_arg_a24c44867bb2c637387ca4cb508b79613}} 
+def {\bfseries to\+\_\+args} (self)
+\end{DoxyCompactItemize}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classconfig__to__arg_1_1_config_to_arg_a8cf8295fec60995e7354ebb38fd4c96b}\label{classconfig__to__arg_1_1_config_to_arg_a8cf8295fec60995e7354ebb38fd4c96b}} 
+{\bfseries config\+\_\+options}
+\item 
+\mbox{\Hypertarget{classconfig__to__arg_1_1_config_to_arg_a085f7121d8a5c5125a28b2131d7ad580}\label{classconfig__to__arg_1_1_config_to_arg_a085f7121d8a5c5125a28b2131d7ad580}} 
+{\bfseries optional\+\_\+config\+\_\+option\+\_\+defaults}
+\item 
+\mbox{\Hypertarget{classconfig__to__arg_1_1_config_to_arg_ab2d0b438f05da5d9bdaa6f0ee7f184f4}\label{classconfig__to__arg_1_1_config_to_arg_ab2d0b438f05da5d9bdaa6f0ee7f184f4}} 
+{\bfseries types}
+\item 
+\mbox{\Hypertarget{classconfig__to__arg_1_1_config_to_arg_ab4f530603e6948c4b86e69f7e01112a1}\label{classconfig__to__arg_1_1_config_to_arg_ab4f530603e6948c4b86e69f7e01112a1}} 
+{\bfseries constraints}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Detailed Description}
+\begin{DoxyVerb}A easily configurable class meant to be used for different configuration sections.
+\end{DoxyVerb}
+ 
+
+\doxysubsection{Constructor \& Destructor Documentation}
+\mbox{\Hypertarget{classconfig__to__arg_1_1_config_to_arg_a0423918c5ac9ce0372cc30c72ae803aa}\label{classconfig__to__arg_1_1_config_to_arg_a0423918c5ac9ce0372cc30c72ae803aa}} 
+\index{config\_to\_arg.ConfigToArg@{config\_to\_arg.ConfigToArg}!\_\_init\_\_@{\_\_init\_\_}}
+\index{\_\_init\_\_@{\_\_init\_\_}!config\_to\_arg.ConfigToArg@{config\_to\_arg.ConfigToArg}}
+\doxysubsubsection{\texorpdfstring{\_\_init\_\_()}{\_\_init\_\_()}}
+{\footnotesize\ttfamily def config\+\_\+to\+\_\+arg.\+Config\+To\+Arg.\+\_\+\+\_\+init\+\_\+\+\_\+ (\begin{DoxyParamCaption}\item[{}]{self,  }\item[{}]{config,  }\item[{}]{name,  }\item[{}]{filename,  }\item[{}]{config\+\_\+options = {\ttfamily \{\}},  }\item[{}]{defaults = {\ttfamily \{\}},  }\item[{}]{types = {\ttfamily \{\}},  }\item[{}]{constraints = {\ttfamily \{\}} }\end{DoxyParamCaption})}
+
+\begin{DoxyVerb}:param config a dictionary from the parsed config file
+:param name the name of this configuration section (e.g. examm.<section_name>)
+:param filename name / path of the configuration file
+
+:param config_options a map from config option name to a lambda used to turn
+the parameter into a list of command line arguments. The lambda takes self and the
+value of the parameter as arguments.
+
+:param defaults a map from config option name to a lambda that
+returns the default value of a parameter. If a config option does not appear
+in this map then it is not optional. If the value of an option is None,
+it won't be added to the argument list / it will remain unset.
+
+:param types maps config option name to a set of the valid types for that config option.
+
+:param constraints maps config option name to a tuple, the first element is a lambda that
+takes the config option value as an argument and returns True if it meets all constraints.
+The second value of the tuple is a short description of the constraints.
+\end{DoxyVerb}
+ 
+
+The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cli/config\+\_\+to\+\_\+arg.\+py\end{DoxyCompactItemize}
diff --git a/docs/latex/classexamm__task_1_1_examm_task.eps b/docs/latex/classexamm__task_1_1_examm_task.eps
new file mode 100644
index 00000000..3439d880
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+++ b/docs/latex/classexamm__task_1_1_examm_task.eps
@@ -0,0 +1,197 @@
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diff --git a/docs/latex/classexamm__task_1_1_examm_task.tex b/docs/latex/classexamm__task_1_1_examm_task.tex
new file mode 100644
index 00000000..d562017c
--- /dev/null
+++ b/docs/latex/classexamm__task_1_1_examm_task.tex
@@ -0,0 +1,166 @@
+\hypertarget{classexamm__task_1_1_examm_task}{}\doxysection{examm\+\_\+task.\+Examm\+Task Class Reference}
+\label{classexamm__task_1_1_examm_task}\index{examm\_task.ExammTask@{examm\_task.ExammTask}}
+Inheritance diagram for examm\+\_\+task.\+Examm\+Task\+:\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=2.000000cm]{classexamm__task_1_1_examm_task}
+\end{center}
+\end{figure}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a5119a595242db05a6da9cab9e0c1ac71}\label{classexamm__task_1_1_examm_task_a5119a595242db05a6da9cab9e0c1ac71}} 
+def {\bfseries \+\_\+\+\_\+init\+\_\+\+\_\+} (self, toml\+\_\+object, file\+\_\+path, run\+\_\+number)
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a8b81653168fb3c8ead9121b5e95d3a6a}\label{classexamm__task_1_1_examm_task_a8b81653168fb3c8ead9121b5e95d3a6a}} 
+def {\bfseries to\+\_\+command} (self)
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a2757a4f0790e4fd677a4b61afebe0943}\label{classexamm__task_1_1_examm_task_a2757a4f0790e4fd677a4b61afebe0943}} 
+def {\bfseries all\+\_\+strings} (self, some\+\_\+list)
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a42db8070c8a2b98c039c47426593e88a}\label{classexamm__task_1_1_examm_task_a42db8070c8a2b98c039c47426593e88a}} 
+def {\bfseries glob\+\_\+to\+\_\+all} (paths)
+\end{DoxyCompactItemize}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_ab1f9fa55d6ca5621228e55a28a9c13ad}\label{classexamm__task_1_1_examm_task_ab1f9fa55d6ca5621228e55a28a9c13ad}} 
+{\bfseries examm\+\_\+config}
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a752f28628fd4411a18f94d6c74a1b6de}\label{classexamm__task_1_1_examm_task_a752f28628fd4411a18f94d6c74a1b6de}} 
+{\bfseries filename}
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a36260f518ff0be1f547733e8627beb23}\label{classexamm__task_1_1_examm_task_a36260f518ff0be1f547733e8627beb23}} 
+{\bfseries version}
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_af0fb2f0fab51ef210a0913abdb6bf44f}\label{classexamm__task_1_1_examm_task_af0fb2f0fab51ef210a0913abdb6bf44f}} 
+{\bfseries parallelism}
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a69ced56acbffda148ff50c63c8ffa969}\label{classexamm__task_1_1_examm_task_a69ced56acbffda148ff50c63c8ffa969}} 
+{\bfseries output\+\_\+directory}
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_af01348dcf6873ad50c8ede43c20ac720}\label{classexamm__task_1_1_examm_task_af01348dcf6873ad50c8ede43c20ac720}} 
+list {\bfseries A\+L\+L\+\_\+\+N\+O\+D\+E\+\_\+\+T\+Y\+P\+ES} = \mbox{[} \textquotesingle{}simple\textquotesingle{}, \textquotesingle{}U\+G\+R\+NN\textquotesingle{}, \textquotesingle{}M\+GU\textquotesingle{}, \textquotesingle{}G\+RU\textquotesingle{}, \textquotesingle{}delta\textquotesingle{}, \textquotesingle{}L\+S\+TM\textquotesingle{} , \textquotesingle{}E\+N\+A\+RC\textquotesingle{} \mbox{]}
+\item 
+dictionary {\bfseries C\+O\+N\+F\+I\+G\+\_\+\+O\+P\+T\+I\+O\+NS}
+\item 
+dictionary {\bfseries D\+E\+F\+A\+U\+L\+TS}
+\item 
+dictionary {\bfseries T\+Y\+P\+ES}
+\item 
+dictionary {\bfseries C\+O\+N\+S\+T\+R\+A\+I\+N\+TS}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_aae6eeef6249cb3398c603e22259a8615}\label{classexamm__task_1_1_examm_task_aae6eeef6249cb3398c603e22259a8615}} 
+\index{examm\_task.ExammTask@{examm\_task.ExammTask}!CONFIG\_OPTIONS@{CONFIG\_OPTIONS}}
+\index{CONFIG\_OPTIONS@{CONFIG\_OPTIONS}!examm\_task.ExammTask@{examm\_task.ExammTask}}
+\doxysubsubsection{\texorpdfstring{CONFIG\_OPTIONS}{CONFIG\_OPTIONS}}
+{\footnotesize\ttfamily dictionary examm\+\_\+task.\+Examm\+Task.\+C\+O\+N\+F\+I\+G\+\_\+\+O\+P\+T\+I\+O\+NS\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{"training\_files"}:       \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/training\_filenames'}] + ExammTask.glob\_to\_all(x),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"test\_files"}:           \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/test\_filenames'}] + ExammTask.glob\_to\_all(x),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"time\_offset"}:          \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/time\_offset'}, str(x)],}
+\DoxyCodeLine{            \textcolor{stringliteral}{"input\_parameters"}:     \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/input\_parameter\_names'}] + list(map(str, x)),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"output\_parameters"}:    \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/output\_parameter\_names'}] + list(map(str, x)),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"n\_islands"}:            \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/number\_islands'}, str(x)],}
+\DoxyCodeLine{            \textcolor{stringliteral}{"population\_size"}:      \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/population\_size'}, str(x)],}
+\DoxyCodeLine{            \textcolor{stringliteral}{"max\_genomes"}:          \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/max\_genomes'}, str(x)],}
+\DoxyCodeLine{            \textcolor{stringliteral}{"bp\_iterations"}:        \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/bp\_iterations'}, str(x)],}
+\DoxyCodeLine{            \textcolor{stringliteral}{"output\_directory"}:     \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/output\_directory'}, str(x)],}
+\DoxyCodeLine{            \textcolor{stringliteral}{"node\_types"}:           \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/possible\_node\_types'}] + list(map(str, x)),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"rec"}:                  \textcolor{keyword}{lambda} self, x: RecArgs(x, self.filename).to\_args(),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"island\_purging"}:       \textcolor{keyword}{lambda} self, x: IslandPurgingArgs(x, self.filename).to\_args()}
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a22398504cffcc3e032690b7c55e21556}\label{classexamm__task_1_1_examm_task_a22398504cffcc3e032690b7c55e21556}} 
+\index{examm\_task.ExammTask@{examm\_task.ExammTask}!CONSTRAINTS@{CONSTRAINTS}}
+\index{CONSTRAINTS@{CONSTRAINTS}!examm\_task.ExammTask@{examm\_task.ExammTask}}
+\doxysubsubsection{\texorpdfstring{CONSTRAINTS}{CONSTRAINTS}}
+{\footnotesize\ttfamily dictionary examm\+\_\+task.\+Examm\+Task.\+C\+O\+N\+S\+T\+R\+A\+I\+N\+TS\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{"training\_files"}:       (\textcolor{keyword}{lambda} self: self.all\_strings(self.training\_files),}
+\DoxyCodeLine{                                    \textcolor{stringliteral}{"must be a list of strings"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"test\_files"}:           (\textcolor{keyword}{lambda} self: self.all\_strings(self.test\_files),}
+\DoxyCodeLine{                                    \textcolor{stringliteral}{"must be a list of strings"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"time\_offset"}:          (\textcolor{keyword}{lambda} self: self.time\_offset > 0, \textcolor{stringliteral}{"must a positive integer"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"input\_parameters"}:     (\textcolor{keyword}{lambda} self: self.all\_strings(self.input\_parameters),}
+\DoxyCodeLine{                                    \textcolor{stringliteral}{"must be a list of strings"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"output\_parameters"}:    (\textcolor{keyword}{lambda} self: self.all\_strings(self.output\_parameters),}
+\DoxyCodeLine{                                    \textcolor{stringliteral}{"must be a list of strings"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"n\_islands"}:            (\textcolor{keyword}{lambda} self: self.n\_islands > 0, \textcolor{stringliteral}{"must be a positive integer"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"population\_size"}:      (\textcolor{keyword}{lambda} self: self.population\_size > 0, \textcolor{stringliteral}{"must be a positive integer"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"max\_genomes"}:          (\textcolor{keyword}{lambda} self: self.max\_genomes > 0, \textcolor{stringliteral}{"must be a positive integer"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"bp\_iterations"}:        (\textcolor{keyword}{lambda} self: self.bp\_iterations >= 0, \textcolor{stringliteral}{"must be a non-\/negative integer"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"output\_directory"}:     (\textcolor{keyword}{lambda} self: \textcolor{keyword}{True}, \textcolor{stringliteral}{"must be a valid path"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"node\_types"}:           (\textcolor{keyword}{lambda} self: self.all\_strings(self.node\_types) \(\backslash\)}
+\DoxyCodeLine{                                                \textcolor{keywordflow}{and} set(self.node\_types).issubset(set(ExammTask.ALL\_NODE\_TYPES)),}
+\DoxyCodeLine{                                    \textcolor{stringliteral}{"must be a subset of "} + str(ALL\_NODE\_TYPES)),}
+\DoxyCodeLine{            \textcolor{comment}{\# Subsections should be of type dict}}
+\DoxyCodeLine{            \textcolor{stringliteral}{"rec"}:                  (\textcolor{keyword}{lambda} self: \textcolor{keyword}{True}, \textcolor{stringliteral}{""}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"island\_purging"}:       (\textcolor{keyword}{lambda} self: \textcolor{keyword}{True}, \textcolor{stringliteral}{""})}
+\DoxyCodeLine{ }
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a6a8084b4265f660640f91d59eea44835}\label{classexamm__task_1_1_examm_task_a6a8084b4265f660640f91d59eea44835}} 
+\index{examm\_task.ExammTask@{examm\_task.ExammTask}!DEFAULTS@{DEFAULTS}}
+\index{DEFAULTS@{DEFAULTS}!examm\_task.ExammTask@{examm\_task.ExammTask}}
+\doxysubsubsection{\texorpdfstring{DEFAULTS}{DEFAULTS}}
+{\footnotesize\ttfamily dictionary examm\+\_\+task.\+Examm\+Task.\+D\+E\+F\+A\+U\+L\+TS\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{"node\_types"}: \textcolor{keyword}{lambda}: ExammTask.ALL\_NODE\_TYPES,}
+\DoxyCodeLine{            \textcolor{stringliteral}{"rec"}: \textcolor{keyword}{lambda}: dict(),}
+\DoxyCodeLine{            \textcolor{stringliteral}{"island\_purging"}: \textcolor{keyword}{lambda}: dict()}
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+\mbox{\Hypertarget{classexamm__task_1_1_examm_task_a94966dcee15238e180cede3c68ac7712}\label{classexamm__task_1_1_examm_task_a94966dcee15238e180cede3c68ac7712}} 
+\index{examm\_task.ExammTask@{examm\_task.ExammTask}!TYPES@{TYPES}}
+\index{TYPES@{TYPES}!examm\_task.ExammTask@{examm\_task.ExammTask}}
+\doxysubsubsection{\texorpdfstring{TYPES}{TYPES}}
+{\footnotesize\ttfamily dictionary examm\+\_\+task.\+Examm\+Task.\+T\+Y\+P\+ES\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{"training\_files"}:       \{list\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"test\_files"}:           \{list\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"time\_offset"}:          \{int\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"input\_parameters"}:     \{list\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"output\_parameters"}:    \{list\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"n\_islands"}:            \{int\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"population\_size"}:      \{int\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"max\_genomes"}:          \{int\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"bp\_iterations"}:        \{int\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"output\_directory"}:     \{str\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"node\_types"}:           \{list\},}
+\DoxyCodeLine{            \textcolor{comment}{\# Subsections should be of type dict}}
+\DoxyCodeLine{            \textcolor{stringliteral}{"rec"}:                  \{dict\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{"island\_purging"}:       \{dict\}}
+\DoxyCodeLine{ }
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+
+
+The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cli/examm\+\_\+task.\+py\end{DoxyCompactItemize}
diff --git a/docs/latex/classisland__purging__args_1_1_island_purging_args.tex b/docs/latex/classisland__purging__args_1_1_island_purging_args.tex
new file mode 100644
index 00000000..15233452
--- /dev/null
+++ b/docs/latex/classisland__purging__args_1_1_island_purging_args.tex
@@ -0,0 +1,109 @@
+\hypertarget{classisland__purging__args_1_1_island_purging_args}{}\doxysection{island\+\_\+purging\+\_\+args.\+Island\+Purging\+Args Class Reference}
+\label{classisland__purging__args_1_1_island_purging_args}\index{island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classisland__purging__args_1_1_island_purging_args_a4b9638c5cda5ea696b73d0bac5b7b646}\label{classisland__purging__args_1_1_island_purging_args_a4b9638c5cda5ea696b73d0bac5b7b646}} 
+def {\bfseries \+\_\+\+\_\+init\+\_\+\+\_\+} (self, rec, filename)
+\item 
+\mbox{\Hypertarget{classisland__purging__args_1_1_island_purging_args_a989d7b5c2711f982f060ea0b60a7393a}\label{classisland__purging__args_1_1_island_purging_args_a989d7b5c2711f982f060ea0b60a7393a}} 
+def {\bfseries to\+\_\+args} (self)
+\end{DoxyCompactItemize}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classisland__purging__args_1_1_island_purging_args_a120817e8732b70bd03a800994496540e}\label{classisland__purging__args_1_1_island_purging_args_a120817e8732b70bd03a800994496540e}} 
+{\bfseries c2a}
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+dictionary {\bfseries S\+E\+L\+E\+C\+T\+I\+O\+N\+\_\+\+M\+E\+T\+H\+O\+D\+\_\+\+M\+AP}
+\item 
+dictionary {\bfseries C\+O\+N\+F\+I\+G\+\_\+\+O\+P\+T\+I\+O\+NS}
+\item 
+dictionary {\bfseries D\+E\+F\+A\+U\+L\+TS}
+\item 
+dictionary {\bfseries T\+Y\+P\+ES}
+\item 
+dictionary {\bfseries C\+O\+N\+S\+T\+R\+A\+I\+N\+TS}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{classisland__purging__args_1_1_island_purging_args_ac0408cda21769d62b29c0b07080ea541}\label{classisland__purging__args_1_1_island_purging_args_ac0408cda21769d62b29c0b07080ea541}} 
+\index{island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}!CONFIG\_OPTIONS@{CONFIG\_OPTIONS}}
+\index{CONFIG\_OPTIONS@{CONFIG\_OPTIONS}!island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}}
+\doxysubsubsection{\texorpdfstring{CONFIG\_OPTIONS}{CONFIG\_OPTIONS}}
+{\footnotesize\ttfamily dictionary island\+\_\+purging\+\_\+args.\+Island\+Purging\+Args.\+C\+O\+N\+F\+I\+G\+\_\+\+O\+P\+T\+I\+O\+NS\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{'selection\_method'}: \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/check\_on\_island\_method'}, IslandPurgingArgs.SELECTION\_METHOD\_MAP[x]],}
+\DoxyCodeLine{            \textcolor{stringliteral}{'period'}:           \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/num\_genomes\_check\_worst\_fit'}, str(x)],}
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+\mbox{\Hypertarget{classisland__purging__args_1_1_island_purging_args_a688ff9b68d60391090be6f49ee90cc27}\label{classisland__purging__args_1_1_island_purging_args_a688ff9b68d60391090be6f49ee90cc27}} 
+\index{island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}!CONSTRAINTS@{CONSTRAINTS}}
+\index{CONSTRAINTS@{CONSTRAINTS}!island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}}
+\doxysubsubsection{\texorpdfstring{CONSTRAINTS}{CONSTRAINTS}}
+{\footnotesize\ttfamily dictionary island\+\_\+purging\+\_\+args.\+Island\+Purging\+Args.\+C\+O\+N\+S\+T\+R\+A\+I\+N\+TS\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{'period'}: (\textcolor{keyword}{lambda} self: self.period > 0,}
+\DoxyCodeLine{                    \textcolor{stringliteral}{"must be a positive integer"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{'selection\_method'}: (\textcolor{keyword}{lambda} self: self.selection\_method \textcolor{keywordflow}{in} \{\textcolor{stringliteral}{'worst\_best'}\},}
+\DoxyCodeLine{                    \textcolor{stringliteral}{"must be unset or 'worst\_best'"})}
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+\mbox{\Hypertarget{classisland__purging__args_1_1_island_purging_args_af4b7da43c0947f3b0964a07c0df81748}\label{classisland__purging__args_1_1_island_purging_args_af4b7da43c0947f3b0964a07c0df81748}} 
+\index{island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}!DEFAULTS@{DEFAULTS}}
+\index{DEFAULTS@{DEFAULTS}!island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}}
+\doxysubsubsection{\texorpdfstring{DEFAULTS}{DEFAULTS}}
+{\footnotesize\ttfamily dictionary island\+\_\+purging\+\_\+args.\+Island\+Purging\+Args.\+D\+E\+F\+A\+U\+L\+TS\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{'selection\_method'}: \textcolor{keyword}{lambda}: \textcolor{keywordtype}{None},}
+\DoxyCodeLine{            \textcolor{stringliteral}{'period'}: \textcolor{keyword}{lambda}: \textcolor{keywordtype}{None},}
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+\mbox{\Hypertarget{classisland__purging__args_1_1_island_purging_args_a3777a6ef4fac9e1e48234b5f76169614}\label{classisland__purging__args_1_1_island_purging_args_a3777a6ef4fac9e1e48234b5f76169614}} 
+\index{island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}!SELECTION\_METHOD\_MAP@{SELECTION\_METHOD\_MAP}}
+\index{SELECTION\_METHOD\_MAP@{SELECTION\_METHOD\_MAP}!island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}}
+\doxysubsubsection{\texorpdfstring{SELECTION\_METHOD\_MAP}{SELECTION\_METHOD\_MAP}}
+{\footnotesize\ttfamily dictionary island\+\_\+purging\+\_\+args.\+Island\+Purging\+Args.\+S\+E\+L\+E\+C\+T\+I\+O\+N\+\_\+\+M\+E\+T\+H\+O\+D\+\_\+\+M\+AP\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{'worst\_best'}: \textcolor{stringliteral}{'clear\_island\_with\_worst\_best\_genome'}}
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+\mbox{\Hypertarget{classisland__purging__args_1_1_island_purging_args_ababdf6b88eef9038a42ca6c03c8337ab}\label{classisland__purging__args_1_1_island_purging_args_ababdf6b88eef9038a42ca6c03c8337ab}} 
+\index{island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}!TYPES@{TYPES}}
+\index{TYPES@{TYPES}!island\_purging\_args.IslandPurgingArgs@{island\_purging\_args.IslandPurgingArgs}}
+\doxysubsubsection{\texorpdfstring{TYPES}{TYPES}}
+{\footnotesize\ttfamily dictionary island\+\_\+purging\+\_\+args.\+Island\+Purging\+Args.\+T\+Y\+P\+ES\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{'period'}: \{int\},}
+\DoxyCodeLine{            \textcolor{stringliteral}{'selection\_method'}: \{str\}}
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+
+
+The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cli/island\+\_\+purging\+\_\+args.\+py\end{DoxyCompactItemize}
diff --git a/docs/latex/classmin__max__heap.tex b/docs/latex/classmin__max__heap.tex
new file mode 100644
index 00000000..e9bc1457
--- /dev/null
+++ b/docs/latex/classmin__max__heap.tex
@@ -0,0 +1,184 @@
+\hypertarget{classmin__max__heap}{}\doxysection{min\+\_\+max\+\_\+heap$<$ T $>$ Class Template Reference}
+\label{classmin__max__heap}\index{min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}}
+
+
+This implementation of a \mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}} was basically ripped from here\+: \href{https://github.com/itsjohncs/minmaxheap-cpp/blob/master/MinMaxHeap.hpp}{\texttt{ https\+://github.\+com/itsjohncs/minmaxheap-\/cpp/blob/master/\+Min\+Max\+Heap.\+hpp}}.  
+
+
+
+
+{\ttfamily \#include $<$min\+\_\+max\+\_\+heap.\+hxx$>$}
+
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\hyperlink{classmin__max__heap_a8150a4c81beed0795529f923cdc57751}{min\+\_\+max\+\_\+heap}} (\textbf{ std\+::function}$<$ bool(const T \&, const T \&)$>$ \+\_\+less\+\_\+than, uint32\+\_\+t size\+\_\+hint=-\/1)
+\begin{DoxyCompactList}\small\item\em Creates a new \mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}}. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{classmin__max__heap_ae1ae5ecbdcec9be68322b8b369beb5a4}\label{classmin__max__heap_ae1ae5ecbdcec9be68322b8b369beb5a4}} 
+bool {\bfseries empty} () const
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a75d5cef5d4098a9b8c1d5ba27438b44f}\label{classmin__max__heap_a75d5cef5d4098a9b8c1d5ba27438b44f}} 
+uint32\+\_\+t {\bfseries size} () const
+\item 
+\mbox{\Hypertarget{classmin__max__heap_af3daad04ceab28dbd8f262c251925a9d}\label{classmin__max__heap_af3daad04ceab28dbd8f262c251925a9d}} 
+void \mbox{\hyperlink{classmin__max__heap_af3daad04ceab28dbd8f262c251925a9d}{enqueue}} (const T \&e)
+\begin{DoxyCompactList}\small\item\em Adds the element e to the heap (in the correct order of course). \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{classmin__max__heap_a44435bb29db7b94beffa474be7a1ea3f}\label{classmin__max__heap_a44435bb29db7b94beffa474be7a1ea3f}} 
+const T \& {\bfseries find\+\_\+max} () const
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a662b330984f8c17e7af014091b85a5e4}\label{classmin__max__heap_a662b330984f8c17e7af014091b85a5e4}} 
+const T \& {\bfseries find\+\_\+min} () const
+\item 
+T \mbox{\hyperlink{classmin__max__heap_a9184c94f7909bc98b6097cad8a49f4bc}{pop\+\_\+max}} ()
+\begin{DoxyCompactList}\small\item\em Returns and removes the maximum item in this min-\/max heap. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{classmin__max__heap_a180790e37a1d72856b3cd28a84f53287}\label{classmin__max__heap_a180790e37a1d72856b3cd28a84f53287}} 
+T {\bfseries pop} ()
+\item 
+T \mbox{\hyperlink{classmin__max__heap_aa80b1443a03ec6c6f63382b8d93a4b11}{pop\+\_\+min}} ()
+\begin{DoxyCompactList}\small\item\em Returns and removes the minimum item in this min-\/max heap. \end{DoxyCompactList}\item 
+const\+\_\+iterator \mbox{\hyperlink{classmin__max__heap_a42e3ecf3ab992eddf731bba3cdd5ce9d}{cbegin}} ()
+\begin{DoxyCompactList}\small\item\em returns the const\+\_\+iterator to the beginning of the underlying vector. \end{DoxyCompactList}\item 
+const\+\_\+iterator \mbox{\hyperlink{classmin__max__heap_afeaa2d61f64081af3645044292dac605}{cend}} ()
+\begin{DoxyCompactList}\small\item\em returns the const\+\_\+iterator pointing past the end of the underlying vector (i.\+e. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{classmin__max__heap_a296ebbc3fe939b962f339d62aff83d15}\label{classmin__max__heap_a296ebbc3fe939b962f339d62aff83d15}} 
+T \& \mbox{\hyperlink{classmin__max__heap_a296ebbc3fe939b962f339d62aff83d15}{operator\mbox{[}$\,$\mbox{]}}} (size\+\_\+t index)
+\begin{DoxyCompactList}\small\item\em Implementation of the indexing operator to allow direct access. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{classmin__max__heap_a3296e9f6f5b4eab2818d0ae9f8510e06}\label{classmin__max__heap_a3296e9f6f5b4eab2818d0ae9f8510e06}} 
+T \mbox{\hyperlink{classmin__max__heap_a3296e9f6f5b4eab2818d0ae9f8510e06}{erase}} (size\+\_\+t index)
+\begin{DoxyCompactList}\small\item\em Allows for deletion of an element at a specified index in O(log(n)) time. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{classmin__max__heap_a962166c243c1a1278b41b59d397a5189}\label{classmin__max__heap_a962166c243c1a1278b41b59d397a5189}} 
+void \mbox{\hyperlink{classmin__max__heap_a962166c243c1a1278b41b59d397a5189}{reserve}} (size\+\_\+t n)
+\begin{DoxyCompactList}\small\item\em Ensures that the underlying vector can hold at least n elements. \end{DoxyCompactList}\item 
+\mbox{\Hypertarget{classmin__max__heap_a7bc015a4db5cc82870e23732e0b01c60}\label{classmin__max__heap_a7bc015a4db5cc82870e23732e0b01c60}} 
+void \mbox{\hyperlink{classmin__max__heap_a7bc015a4db5cc82870e23732e0b01c60}{clear}} ()
+\begin{DoxyCompactList}\small\item\em Deletes every element in this heap. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\doxysubsection*{Private Types}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classmin__max__heap_ac30e7b7215bebb739cd3eb9eba912a85}\label{classmin__max__heap_ac30e7b7215bebb739cd3eb9eba912a85}} 
+typedef \textbf{ std\+::vector}$<$ T $>$\+::const\+\_\+iterator {\bfseries const\+\_\+iterator}
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a295f6c99a8b902cc1d688eefe5779736}\label{classmin__max__heap_a295f6c99a8b902cc1d688eefe5779736}} 
+{\footnotesize template$<$bool max\+\_\+level$>$ }\\void {\bfseries trickle\+\_\+up\+\_\+inner} (uint32\+\_\+t z)
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a606a7c04315e6d4f415d0dec3464cf9d}\label{classmin__max__heap_a606a7c04315e6d4f415d0dec3464cf9d}} 
+void {\bfseries trickle\+\_\+up} (uint32\+\_\+t z)
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a1d893c1254f50fcd2ee84e4d2c9fad46}\label{classmin__max__heap_a1d893c1254f50fcd2ee84e4d2c9fad46}} 
+{\footnotesize template$<$bool max\+\_\+level$>$ }\\void {\bfseries trickle\+\_\+down\+\_\+inner} (const uint32\+\_\+t z)
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a6fc48c130f871bbcd343141fdfee8176}\label{classmin__max__heap_a6fc48c130f871bbcd343141fdfee8176}} 
+void {\bfseries trickle\+\_\+down} (uint32\+\_\+t z)
+\item 
+\mbox{\Hypertarget{classmin__max__heap_abf72fb5bec7655ab16fe1c178ebfa06e}\label{classmin__max__heap_abf72fb5bec7655ab16fe1c178ebfa06e}} 
+uint32\+\_\+t {\bfseries find\+\_\+min\+\_\+index} () const
+\item 
+\mbox{\Hypertarget{classmin__max__heap_af7217da00ac35b2811b624d93a1d8e7a}\label{classmin__max__heap_af7217da00ac35b2811b624d93a1d8e7a}} 
+T {\bfseries delete\+\_\+element} (uint32\+\_\+t z)
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Private Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a813d3838b295f27a52f8f986f4d5cdbe}\label{classmin__max__heap_a813d3838b295f27a52f8f986f4d5cdbe}} 
+static uint32\+\_\+t {\bfseries parent} (uint32\+\_\+t z)
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a6f85d95a22907d30d6a099e75c00518e}\label{classmin__max__heap_a6f85d95a22907d30d6a099e75c00518e}} 
+static uint32\+\_\+t {\bfseries left\+\_\+child} (uint32\+\_\+t z)
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a2249d6b56d22b8833c15efe07c2dd1d0}\label{classmin__max__heap_a2249d6b56d22b8833c15efe07c2dd1d0}} 
+static uint32\+\_\+t {\bfseries right\+\_\+child} (uint32\+\_\+t z)
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a59893aed50ba7c69dbec36ce0300ee41}\label{classmin__max__heap_a59893aed50ba7c69dbec36ce0300ee41}} 
+static bool {\bfseries is\+\_\+on\+\_\+min\+\_\+level} (uint32\+\_\+t z)
+\item 
+\mbox{\Hypertarget{classmin__max__heap_a3f588656c909df8ecfd3686b1f6dcd91}\label{classmin__max__heap_a3f588656c909df8ecfd3686b1f6dcd91}} 
+static bool {\bfseries is\+\_\+on\+\_\+max\+\_\+level} (uint32\+\_\+t z)
+\end{DoxyCompactItemize}
+\doxysubsection*{Private Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classmin__max__heap_adfbc5da06a1e984ab32754342df4d46f}\label{classmin__max__heap_adfbc5da06a1e984ab32754342df4d46f}} 
+vector$<$ T $>$ {\bfseries heap}
+\item 
+\mbox{\Hypertarget{classmin__max__heap_aff5a71e4120a281f3b470fefe0eae260}\label{classmin__max__heap_aff5a71e4120a281f3b470fefe0eae260}} 
+function$<$ bool(const T \&, const T \&)$>$ {\bfseries less\+\_\+than}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Detailed Description}
+\subsubsection*{template$<$class T$>$\newline
+class min\+\_\+max\+\_\+heap$<$ T $>$}
+
+This implementation of a \mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}} was basically ripped from here\+: \href{https://github.com/itsjohncs/minmaxheap-cpp/blob/master/MinMaxHeap.hpp}{\texttt{ https\+://github.\+com/itsjohncs/minmaxheap-\/cpp/blob/master/\+Min\+Max\+Heap.\+hpp}}. 
+
+Along with this for reference \href{https://en.wikipedia.org/wiki/Min-max_heap}{\texttt{ https\+://en.\+wikipedia.\+org/wiki/\+Min-\/max\+\_\+heap}}
+
+The first layer (e.\+g. the layer which only contains the root node) contains the maximum element. 
+
+\doxysubsection{Constructor \& Destructor Documentation}
+\mbox{\Hypertarget{classmin__max__heap_a8150a4c81beed0795529f923cdc57751}\label{classmin__max__heap_a8150a4c81beed0795529f923cdc57751}} 
+\index{min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}!min\_max\_heap@{min\_max\_heap}}
+\index{min\_max\_heap@{min\_max\_heap}!min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}}
+\doxysubsubsection{\texorpdfstring{min\_max\_heap()}{min\_max\_heap()}}
+{\footnotesize\ttfamily template$<$class T $>$ \\
+\mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}}$<$ T $>$\+::\mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}} (\begin{DoxyParamCaption}\item[{\textbf{ std\+::function}$<$ bool(const T \&, const T \&)$>$}]{\+\_\+less\+\_\+than,  }\item[{uint32\+\_\+t}]{size\+\_\+hint = {\ttfamily -\/1} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}}
+
+
+
+Creates a new \mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}}. 
+
+The only parameter is a function that will compare two elements, and determine if the first is less than the second. This could probably be done in a better way with generics but I\textquotesingle{}m not confident in doing so. 
+
+\doxysubsection{Member Function Documentation}
+\mbox{\Hypertarget{classmin__max__heap_a42e3ecf3ab992eddf731bba3cdd5ce9d}\label{classmin__max__heap_a42e3ecf3ab992eddf731bba3cdd5ce9d}} 
+\index{min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}!cbegin@{cbegin}}
+\index{cbegin@{cbegin}!min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}}
+\doxysubsubsection{\texorpdfstring{cbegin()}{cbegin()}}
+{\footnotesize\ttfamily template$<$class T $>$ \\
+const\+\_\+iterator \mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}}$<$ T $>$\+::cbegin (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}}
+
+
+
+returns the const\+\_\+iterator to the beginning of the underlying vector. 
+
+There is no non-\/const iterator because the ordering of the data structure could potentially be changed. \mbox{\Hypertarget{classmin__max__heap_afeaa2d61f64081af3645044292dac605}\label{classmin__max__heap_afeaa2d61f64081af3645044292dac605}} 
+\index{min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}!cend@{cend}}
+\index{cend@{cend}!min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}}
+\doxysubsubsection{\texorpdfstring{cend()}{cend()}}
+{\footnotesize\ttfamily template$<$class T $>$ \\
+const\+\_\+iterator \mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}}$<$ T $>$\+::cend (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}}
+
+
+
+returns the const\+\_\+iterator pointing past the end of the underlying vector (i.\+e. 
+
+this is an invalid reference). There is no non-\/const end iterator because the ordering of the data structure must be preserved. \mbox{\Hypertarget{classmin__max__heap_a9184c94f7909bc98b6097cad8a49f4bc}\label{classmin__max__heap_a9184c94f7909bc98b6097cad8a49f4bc}} 
+\index{min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}!pop\_max@{pop\_max}}
+\index{pop\_max@{pop\_max}!min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}}
+\doxysubsubsection{\texorpdfstring{pop\_max()}{pop\_max()}}
+{\footnotesize\ttfamily template$<$class T $>$ \\
+T \mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}}$<$ T $>$\+::pop\+\_\+max (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}}
+
+
+
+Returns and removes the maximum item in this min-\/max heap. 
+
+If the heap is emoty it will throw an underflow\+\_\+error \mbox{\Hypertarget{classmin__max__heap_aa80b1443a03ec6c6f63382b8d93a4b11}\label{classmin__max__heap_aa80b1443a03ec6c6f63382b8d93a4b11}} 
+\index{min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}!pop\_min@{pop\_min}}
+\index{pop\_min@{pop\_min}!min\_max\_heap$<$ T $>$@{min\_max\_heap$<$ T $>$}}
+\doxysubsubsection{\texorpdfstring{pop\_min()}{pop\_min()}}
+{\footnotesize\ttfamily template$<$class T $>$ \\
+T \mbox{\hyperlink{classmin__max__heap}{min\+\_\+max\+\_\+heap}}$<$ T $>$\+::pop\+\_\+min (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}}
+
+
+
+Returns and removes the minimum item in this min-\/max heap. 
+
+If the heap is empty, it will throw an underflow\+\_\+error 
+
+The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/min\+\_\+max\+\_\+heap.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/classrec__args_1_1_rec_args.tex b/docs/latex/classrec__args_1_1_rec_args.tex
new file mode 100644
index 00000000..0af4c5a8
--- /dev/null
+++ b/docs/latex/classrec__args_1_1_rec_args.tex
@@ -0,0 +1,104 @@
+\hypertarget{classrec__args_1_1_rec_args}{}\doxysection{rec\+\_\+args.\+Rec\+Args Class Reference}
+\label{classrec__args_1_1_rec_args}\index{rec\_args.RecArgs@{rec\_args.RecArgs}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classrec__args_1_1_rec_args_ae258306971ce88fe84711f2b45b25ce2}\label{classrec__args_1_1_rec_args_ae258306971ce88fe84711f2b45b25ce2}} 
+def {\bfseries \+\_\+\+\_\+init\+\_\+\+\_\+} (self, rec, filename)
+\item 
+\mbox{\Hypertarget{classrec__args_1_1_rec_args_adb2ba8e6bea883cedfe9734738288c67}\label{classrec__args_1_1_rec_args_adb2ba8e6bea883cedfe9734738288c67}} 
+def {\bfseries to\+\_\+args} (self)
+\end{DoxyCompactItemize}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{classrec__args_1_1_rec_args_ac2af995aff9e83dcc76135264391505f}\label{classrec__args_1_1_rec_args_ac2af995aff9e83dcc76135264391505f}} 
+{\bfseries c2a}
+\end{DoxyCompactItemize}
+\doxysubsection*{Static Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+dictionary {\bfseries C\+O\+N\+F\+I\+G\+\_\+\+O\+P\+T\+I\+O\+NS}
+\item 
+dictionary {\bfseries D\+E\+F\+A\+U\+L\+TS}
+\item 
+dictionary {\bfseries T\+Y\+P\+ES}
+\item 
+dictionary {\bfseries C\+O\+N\+S\+T\+R\+A\+I\+N\+TS}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Member Data Documentation}
+\mbox{\Hypertarget{classrec__args_1_1_rec_args_a91b75b05d716ac2324963ebc39901b23}\label{classrec__args_1_1_rec_args_a91b75b05d716ac2324963ebc39901b23}} 
+\index{rec\_args.RecArgs@{rec\_args.RecArgs}!CONFIG\_OPTIONS@{CONFIG\_OPTIONS}}
+\index{CONFIG\_OPTIONS@{CONFIG\_OPTIONS}!rec\_args.RecArgs@{rec\_args.RecArgs}}
+\doxysubsubsection{\texorpdfstring{CONFIG\_OPTIONS}{CONFIG\_OPTIONS}}
+{\footnotesize\ttfamily dictionary rec\+\_\+args.\+Rec\+Args.\+C\+O\+N\+F\+I\+G\+\_\+\+O\+P\+T\+I\+O\+NS\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{'min'}: \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/rec\_delay\_min'}, str(x)],}
+\DoxyCodeLine{            \textcolor{stringliteral}{'max'}: \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/rec\_delay\_max'}, str(x)],}
+\DoxyCodeLine{            \textcolor{stringliteral}{'dist'}: \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/rec\_sampling\_distribution'}, str(x)],}
+\DoxyCodeLine{            \textcolor{stringliteral}{'population'}: \textcolor{keyword}{lambda} self, x: [\textcolor{stringliteral}{'-\/-\/rec\_sampling\_population'}, str(x)],}
+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+\mbox{\Hypertarget{classrec__args_1_1_rec_args_a2146df883b85dde5a5385fb586a5e193}\label{classrec__args_1_1_rec_args_a2146df883b85dde5a5385fb586a5e193}} 
+\index{rec\_args.RecArgs@{rec\_args.RecArgs}!CONSTRAINTS@{CONSTRAINTS}}
+\index{CONSTRAINTS@{CONSTRAINTS}!rec\_args.RecArgs@{rec\_args.RecArgs}}
+\doxysubsubsection{\texorpdfstring{CONSTRAINTS}{CONSTRAINTS}}
+{\footnotesize\ttfamily dictionary rec\+\_\+args.\+Rec\+Args.\+C\+O\+N\+S\+T\+R\+A\+I\+N\+TS\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{'min'}: (\textcolor{keyword}{lambda} self: self.min < self.max \textcolor{keywordflow}{and} self.min >= 1,}
+\DoxyCodeLine{                    \textcolor{stringliteral}{"must be less than examm.rec.max and at least 1"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{'max'}: (\textcolor{keyword}{lambda} self: self.max > self.min \textcolor{keywordflow}{and} self.max >= 2,}
+\DoxyCodeLine{                    \textcolor{stringliteral}{"must be greater than examm.rec.min and at least 2"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{'dist'}: (\textcolor{keyword}{lambda} self: self.dist \textcolor{keywordflow}{in} \{\textcolor{stringliteral}{'uniform'}, \textcolor{stringliteral}{'histogram'}, \textcolor{stringliteral}{'normal'}\},}
+\DoxyCodeLine{                    \textcolor{stringliteral}{"must be one of 'uniform', 'histogram', or 'normal'"}),}
+\DoxyCodeLine{            \textcolor{stringliteral}{'population'}: (\textcolor{keyword}{lambda} self: self.population \textcolor{keywordflow}{in} \{\textcolor{stringliteral}{'global'}, \textcolor{stringliteral}{'island'}\},}
+\DoxyCodeLine{                    \textcolor{stringliteral}{"must be either 'global' or 'island'"})}
+\DoxyCodeLine{    \}}
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+\mbox{\Hypertarget{classrec__args_1_1_rec_args_a57018418c93e6e6ed69550fb4dbfbd3f}\label{classrec__args_1_1_rec_args_a57018418c93e6e6ed69550fb4dbfbd3f}} 
+\index{rec\_args.RecArgs@{rec\_args.RecArgs}!DEFAULTS@{DEFAULTS}}
+\index{DEFAULTS@{DEFAULTS}!rec\_args.RecArgs@{rec\_args.RecArgs}}
+\doxysubsubsection{\texorpdfstring{DEFAULTS}{DEFAULTS}}
+{\footnotesize\ttfamily dictionary rec\+\_\+args.\+Rec\+Args.\+D\+E\+F\+A\+U\+L\+TS\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
+\DoxyCodeLine{=  \{}
+\DoxyCodeLine{            \textcolor{stringliteral}{'min'}: \textcolor{keyword}{lambda}: 1,}
+\DoxyCodeLine{            \textcolor{stringliteral}{'max'}: \textcolor{keyword}{lambda}: 50,}
+\DoxyCodeLine{            \textcolor{stringliteral}{'dist'}: \textcolor{keyword}{lambda}: \textcolor{stringliteral}{'uniform'},}
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+\DoxyCodeLine{    \}}
+
+\end{DoxyCode}
+\mbox{\Hypertarget{classrec__args_1_1_rec_args_a446093f75b5a05a2d5968868600288e0}\label{classrec__args_1_1_rec_args_a446093f75b5a05a2d5968868600288e0}} 
+\index{rec\_args.RecArgs@{rec\_args.RecArgs}!TYPES@{TYPES}}
+\index{TYPES@{TYPES}!rec\_args.RecArgs@{rec\_args.RecArgs}}
+\doxysubsubsection{\texorpdfstring{TYPES}{TYPES}}
+{\footnotesize\ttfamily dictionary rec\+\_\+args.\+Rec\+Args.\+T\+Y\+P\+ES\hspace{0.3cm}{\ttfamily [static]}}
+
+{\bfseries Initial value\+:}
+\begin{DoxyCode}{0}
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+
+The documentation for this class was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cli/rec\+\_\+args.\+py\end{DoxyCompactItemize}
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+{\begin{tabu}spread 0pt [l]{*#1{|X[-1]}|}}%
+{\end{tabu}\par}%
+
+% Used for member group headers
+\newenvironment{Indent}{%
+  \begin{list}{}{%
+    \setlength{\leftmargin}{0.5cm}%
+  }%
+  \item[]\ignorespaces%
+}{%
+  \unskip%
+  \end{list}%
+}
+
+% Used when hyperlinks are turned off
+\newcommand{\doxyref}[3]{%
+  \textbf{#1} (\textnormal{#2}\,\pageref{#3})%
+}
+
+% Used to link to a table when hyperlinks are turned on
+\newcommand{\doxytablelink}[2]{%
+  \ref{#1}%
+}
+
+% Used to link to a table when hyperlinks are turned off
+\newcommand{\doxytableref}[3]{%
+  \ref{#3}%
+}
+
+% Used by @addindex
+\newcommand{\lcurly}{\{}
+\newcommand{\rcurly}{\}}
+
+% Colors used for syntax highlighting
+\definecolor{comment}{rgb}{0.5,0.0,0.0}
+\definecolor{keyword}{rgb}{0.0,0.5,0.0}
+\definecolor{keywordtype}{rgb}{0.38,0.25,0.125}
+\definecolor{keywordflow}{rgb}{0.88,0.5,0.0}
+\definecolor{preprocessor}{rgb}{0.5,0.38,0.125}
+\definecolor{stringliteral}{rgb}{0.0,0.125,0.25}
+\definecolor{charliteral}{rgb}{0.0,0.5,0.5}
+\definecolor{vhdldigit}{rgb}{1.0,0.0,1.0}
+\definecolor{vhdlkeyword}{rgb}{0.43,0.0,0.43}
+\definecolor{vhdllogic}{rgb}{1.0,0.0,0.0}
+\definecolor{vhdlchar}{rgb}{0.0,0.0,0.0}
+
+% Color used for table heading
+\newcommand{\tableheadbgcolor}{lightgray}%
+
+% Version of hypertarget with correct landing location
+\newcommand{\Hypertarget}[1]{\Hy@raisedlink{\hypertarget{#1}{}}}
+
+% possibility to have sections etc. be within the margins
+% unfortunately had to copy part of book.cls and add \raggedright
+\makeatletter
+\newcommand\doxysection{\@startsection {section}{1}{\z@}%
+                                   {-3.5ex \@plus -1ex \@minus -.2ex}%
+                                   {2.3ex \@plus.2ex}%
+                                   {\raggedright\normalfont\Large\bfseries}}
+\newcommand\doxysubsection{\@startsection{subsection}{2}{\z@}%
+                                     {-3.25ex\@plus -1ex \@minus -.2ex}%
+                                     {1.5ex \@plus .2ex}%
+                                     {\raggedright\normalfont\large\bfseries}}
+\newcommand\doxysubsubsection{\@startsection{subsubsection}{3}{\z@}%
+                                     {-3.25ex\@plus -1ex \@minus -.2ex}%
+                                     {1.5ex \@plus .2ex}%
+                                     {\raggedright\normalfont\normalsize\bfseries}}
+\newcommand\doxyparagraph{\@startsection{paragraph}{4}{\z@}%
+                                    {3.25ex \@plus1ex \@minus.2ex}%
+                                    {-1em}%
+                                    {\raggedright\normalfont\normalsize\bfseries}}
+\newcommand\doxysubparagraph{\@startsection{subparagraph}{5}{\parindent}%
+                                       {3.25ex \@plus1ex \@minus .2ex}%
+                                       {-1em}%
+                                      {\raggedright\normalfont\normalsize\bfseries}}
+\makeatother
+% Define caption that is also suitable in a table
+\makeatletter
+\def\doxyfigcaption{%
+\refstepcounter{figure}%
+\@dblarg{\@caption{figure}}}
+\makeatother
diff --git a/docs/latex/hierarchy.tex b/docs/latex/hierarchy.tex
new file mode 100644
index 00000000..f9b5f04e
--- /dev/null
+++ b/docs/latex/hierarchy.tex
@@ -0,0 +1,110 @@
+\doxysection{Class Hierarchy}
+This inheritance list is sorted roughly, but not completely, alphabetically\+:\begin{DoxyCompactList}
+\item \contentsline{section}{C\+N\+N\+\_\+\+Edge}{\pageref{class_c_n_n___edge}}{}
+\item \contentsline{section}{C\+N\+N\+\_\+\+Genome}{\pageref{class_c_n_n___genome}}{}
+\item \contentsline{section}{C\+N\+N\+\_\+\+Node}{\pageref{class_c_n_n___node}}{}
+\item \contentsline{section}{Coin}{\pageref{struct_coin}}{}
+\item \contentsline{section}{Color}{\pageref{struct_color}}{}
+\item \contentsline{section}{Color\+Profile}{\pageref{struct_color_profile}}{}
+\item \contentsline{section}{Color\+Tree}{\pageref{struct_color_tree}}{}
+\item \contentsline{section}{config\+\_\+to\+\_\+arg.\+Config\+To\+Arg}{\pageref{classconfig__to__arg_1_1_config_to_arg}}{}
+\begin{DoxyCompactList}
+\item \contentsline{section}{examm\+\_\+task.\+Examm\+Task}{\pageref{classexamm__task_1_1_examm_task}}{}
+\end{DoxyCompactList}
+\item \contentsline{section}{Consolidated\+Statistics}{\pageref{class_consolidated_statistics}}{}
+\item \contentsline{section}{Corpus}{\pageref{class_corpus}}{}
+\item \contentsline{section}{cs\+\_\+less\+\_\+than\+\_\+avg}{\pageref{structcs__less__than__avg}}{}
+\item \contentsline{section}{cs\+\_\+less\+\_\+than\+\_\+max}{\pageref{structcs__less__than__max}}{}
+\item \contentsline{section}{cs\+\_\+less\+\_\+than\+\_\+min}{\pageref{structcs__less__than__min}}{}
+\item \contentsline{section}{E\+X\+A\+CT}{\pageref{class_e_x_a_c_t}}{}
+\item \contentsline{section}{E\+X\+A\+C\+T\+\_\+\+R\+E\+S\+U\+LT}{\pageref{struct_e_x_a_c_t___r_e_s_u_l_t}}{}
+\item \contentsline{section}{E\+X\+A\+MM}{\pageref{class_e_x_a_m_m}}{}
+\item \contentsline{section}{Hash}{\pageref{struct_hash}}{}
+\item \contentsline{section}{Huffman\+Tree}{\pageref{struct_huffman_tree}}{}
+\item \contentsline{section}{Image\+Interface}{\pageref{class_image_interface}}{}
+\begin{DoxyCompactList}
+\item \contentsline{section}{Image}{\pageref{class_image}}{}
+\item \contentsline{section}{Large\+Image}{\pageref{class_large_image}}{}
+\end{DoxyCompactList}
+\item \contentsline{section}{Images\+Interface}{\pageref{class_images_interface}}{}
+\begin{DoxyCompactList}
+\item \contentsline{section}{Images}{\pageref{class_images}}{}
+\item \contentsline{section}{Multi\+Images\+Interface}{\pageref{class_multi_images_interface}}{}
+\begin{DoxyCompactList}
+\item \contentsline{section}{Large\+Images}{\pageref{class_large_images}}{}
+\item \contentsline{section}{Mosaic\+Images}{\pageref{class_mosaic_images}}{}
+\end{DoxyCompactList}
+\end{DoxyCompactList}
+\item \contentsline{section}{Island}{\pageref{class_island}}{}
+\item \contentsline{section}{island\+\_\+purging\+\_\+args.\+Island\+Purging\+Args}{\pageref{classisland__purging__args_1_1_island_purging_args}}{}
+\item \contentsline{section}{less\+\_\+than\+\_\+avg}{\pageref{structless__than__avg}}{}
+\item \contentsline{section}{less\+\_\+than\+\_\+dfm\+\_\+avg}{\pageref{structless__than__dfm__avg}}{}
+\item \contentsline{section}{less\+\_\+than\+\_\+dfm\+\_\+max}{\pageref{structless__than__dfm__max}}{}
+\item \contentsline{section}{less\+\_\+than\+\_\+dfm\+\_\+min}{\pageref{structless__than__dfm__min}}{}
+\item \contentsline{section}{less\+\_\+than\+\_\+max}{\pageref{structless__than__max}}{}
+\item \contentsline{section}{less\+\_\+than\+\_\+min}{\pageref{structless__than__min}}{}
+\item \contentsline{section}{Line}{\pageref{class_line}}{}
+\item \contentsline{section}{Lode\+P\+N\+G\+Color\+Mode}{\pageref{struct_lode_p_n_g_color_mode}}{}
+\item \contentsline{section}{Lode\+P\+N\+G\+Compress\+Settings}{\pageref{struct_lode_p_n_g_compress_settings}}{}
+\item \contentsline{section}{Lode\+P\+N\+G\+Decoder\+Settings}{\pageref{struct_lode_p_n_g_decoder_settings}}{}
+\item \contentsline{section}{Lode\+P\+N\+G\+Decompress\+Settings}{\pageref{struct_lode_p_n_g_decompress_settings}}{}
+\item \contentsline{section}{Lode\+P\+N\+G\+Encoder\+Settings}{\pageref{struct_lode_p_n_g_encoder_settings}}{}
+\item \contentsline{section}{Lode\+P\+N\+G\+Info}{\pageref{struct_lode_p_n_g_info}}{}
+\item \contentsline{section}{Lode\+P\+N\+G\+State}{\pageref{struct_lode_p_n_g_state}}{}
+\item \contentsline{section}{Lode\+P\+N\+G\+Time}{\pageref{struct_lode_p_n_g_time}}{}
+\item \contentsline{section}{Log}{\pageref{class_log}}{}
+\item \contentsline{section}{Log\+File}{\pageref{class_log_file}}{}
+\item \contentsline{section}{min\+\_\+max\+\_\+heap$<$ T $>$}{\pageref{classmin__max__heap}}{}
+\item \contentsline{section}{Normal\+Distribution}{\pageref{class_normal_distribution}}{}
+\item \contentsline{section}{Parse\+Turbines}{\pageref{class_parse_turbines}}{}
+\item \contentsline{section}{Point}{\pageref{class_point}}{}
+\item \contentsline{section}{rec\+\_\+args.\+Rec\+Args}{\pageref{classrec__args_1_1_rec_args}}{}
+\item \contentsline{section}{Rectangle}{\pageref{class_rectangle}}{}
+\item \contentsline{section}{Result\+Set}{\pageref{struct_result_set}}{}
+\item \contentsline{section}{R\+NN}{\pageref{class_r_n_n}}{}
+\item \contentsline{section}{R\+N\+N\+\_\+\+Edge}{\pageref{class_r_n_n___edge}}{}
+\item \contentsline{section}{R\+N\+N\+\_\+\+Genome}{\pageref{class_r_n_n___genome}}{}
+\item \contentsline{section}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}{\pageref{class_r_n_n___node___interface}}{}
+\begin{DoxyCompactList}
+\item \contentsline{section}{Delta\+\_\+\+Node}{\pageref{class_delta___node}}{}
+\item \contentsline{section}{E\+N\+A\+R\+C\+\_\+\+Node}{\pageref{class_e_n_a_r_c___node}}{}
+\item \contentsline{section}{E\+N\+A\+S\+\_\+\+D\+A\+G\+\_\+\+Node}{\pageref{class_e_n_a_s___d_a_g___node}}{}
+\item \contentsline{section}{G\+R\+U\+\_\+\+Node}{\pageref{class_g_r_u___node}}{}
+\item \contentsline{section}{L\+S\+T\+M\+\_\+\+Node}{\pageref{class_l_s_t_m___node}}{}
+\item \contentsline{section}{M\+G\+U\+\_\+\+Node}{\pageref{class_m_g_u___node}}{}
+\item \contentsline{section}{R\+A\+N\+D\+O\+M\+\_\+\+D\+A\+G\+\_\+\+Node}{\pageref{class_r_a_n_d_o_m___d_a_g___node}}{}
+\item \contentsline{section}{R\+N\+N\+\_\+\+Node}{\pageref{class_r_n_n___node}}{}
+\item \contentsline{section}{U\+G\+R\+N\+N\+\_\+\+Node}{\pageref{class_u_g_r_n_n___node}}{}
+\end{DoxyCompactList}
+\item \contentsline{section}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}{\pageref{class_r_n_n___recurrent___edge}}{}
+\item \contentsline{section}{Run\+Statistics}{\pageref{class_run_statistics}}{}
+\item \contentsline{section}{Sentence\+Series}{\pageref{class_sentence_series}}{}
+\item \contentsline{section}{sort\+\_\+\+C\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+depth}{\pageref{structsort___c_n_n___edges__by__depth}}{}
+\item \contentsline{section}{sort\+\_\+\+C\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+innovation}{\pageref{structsort___c_n_n___edges__by__innovation}}{}
+\item \contentsline{section}{sort\+\_\+\+C\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+output\+\_\+depth}{\pageref{structsort___c_n_n___edges__by__output__depth}}{}
+\item \contentsline{section}{sort\+\_\+\+C\+N\+N\+\_\+\+Nodes\+\_\+by\+\_\+depth}{\pageref{structsort___c_n_n___nodes__by__depth}}{}
+\item \contentsline{section}{sort\+\_\+genomes\+\_\+by\+\_\+fitness}{\pageref{structsort__genomes__by__fitness}}{}
+\item \contentsline{section}{sort\+\_\+genomes\+\_\+by\+\_\+predictions}{\pageref{structsort__genomes__by__predictions}}{}
+\item \contentsline{section}{sort\+\_\+genomes\+\_\+by\+\_\+validation\+\_\+error}{\pageref{structsort__genomes__by__validation__error}}{}
+\item \contentsline{section}{sort\+\_\+\+R\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+depth}{\pageref{structsort___r_n_n___edges__by__depth}}{}
+\item \contentsline{section}{sort\+\_\+\+R\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+innovation}{\pageref{structsort___r_n_n___edges__by__innovation}}{}
+\item \contentsline{section}{sort\+\_\+\+R\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+output\+\_\+depth}{\pageref{structsort___r_n_n___edges__by__output__depth}}{}
+\item \contentsline{section}{sort\+\_\+\+R\+N\+N\+\_\+\+Nodes\+\_\+by\+\_\+depth}{\pageref{structsort___r_n_n___nodes__by__depth}}{}
+\item \contentsline{section}{sort\+\_\+\+R\+N\+N\+\_\+\+Nodes\+\_\+by\+\_\+innovation}{\pageref{structsort___r_n_n___nodes__by__innovation}}{}
+\item \contentsline{section}{sort\+\_\+\+R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edges\+\_\+by\+\_\+depth}{\pageref{structsort___r_n_n___recurrent___edges__by__depth}}{}
+\item \contentsline{section}{sort\+\_\+\+R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edges\+\_\+by\+\_\+innovation}{\pageref{structsort___r_n_n___recurrent___edges__by__innovation}}{}
+\item \contentsline{section}{sort\+\_\+\+R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edges\+\_\+by\+\_\+output\+\_\+depth}{\pageref{structsort___r_n_n___recurrent___edges__by__output__depth}}{}
+\item \contentsline{section}{Speciation\+Strategy}{\pageref{class_speciation_strategy}}{}
+\begin{DoxyCompactList}
+\item \contentsline{section}{Island\+Speciation\+Strategy}{\pageref{class_island_speciation_strategy}}{}
+\item \contentsline{section}{Neat\+Speciation\+Strategy}{\pageref{class_neat_speciation_strategy}}{}
+\end{DoxyCompactList}
+\item \contentsline{section}{Species}{\pageref{class_species}}{}
+\item \contentsline{section}{Time\+Series}{\pageref{class_time_series}}{}
+\item \contentsline{section}{Time\+Series\+Set}{\pageref{class_time_series_set}}{}
+\item \contentsline{section}{Time\+Series\+Sets}{\pageref{class_time_series_sets}}{}
+\item \contentsline{section}{Tracker}{\pageref{class_tracker}}{}
+\item \contentsline{section}{ucvector}{\pageref{structucvector}}{}
+\item \contentsline{section}{uivector}{\pageref{structuivector}}{}
+\item \contentsline{section}{Word\+Series}{\pageref{class_word_series}}{}
+\end{DoxyCompactList}
diff --git a/docs/latex/longtable_doxygen.sty b/docs/latex/longtable_doxygen.sty
new file mode 100644
index 00000000..a0eb314f
--- /dev/null
+++ b/docs/latex/longtable_doxygen.sty
@@ -0,0 +1,448 @@
+%%
+%% This is file `longtable.sty',
+%% generated with the docstrip utility.
+%%
+%% The original source files were:
+%%
+%% longtable.dtx  (with options: `package')
+%% 
+%% This is a generated file.
+%% 
+%% The source is maintained by the LaTeX Project team and bug
+%% reports for it can be opened at http://latex-project.org/bugs.html
+%% (but please observe conditions on bug reports sent to that address!)
+%% 
+%% Copyright 1993-2016
+%% The LaTeX3 Project and any individual authors listed elsewhere
+%% in this file.
+%% 
+%% This file was generated from file(s) of the Standard LaTeX `Tools Bundle'.
+%% --------------------------------------------------------------------------
+%% 
+%% It may be distributed and/or modified under the
+%% conditions of the LaTeX Project Public License, either version 1.3c
+%% of this license or (at your option) any later version.
+%% The latest version of this license is in
+%%    http://www.latex-project.org/lppl.txt
+%% and version 1.3c or later is part of all distributions of LaTeX
+%% version 2005/12/01 or later.
+%% 
+%% This file may only be distributed together with a copy of the LaTeX
+%% `Tools Bundle'. You may however distribute the LaTeX `Tools Bundle'
+%% without such generated files.
+%% 
+%% The list of all files belonging to the LaTeX `Tools Bundle' is
+%% given in the file `manifest.txt'.
+%% 
+%% File: longtable.dtx Copyright (C) 1990-2001 David Carlisle
+\NeedsTeXFormat{LaTeX2e}[1995/06/01]
+\ProvidesPackage{longtable_doxygen}
+          [2014/10/28 v4.11 Multi-page Table package (DPC) - frozen version for doxygen]
+\def\LT@err{\PackageError{longtable}}
+\def\LT@warn{\PackageWarning{longtable}}
+\def\LT@final@warn{%
+  \AtEndDocument{%
+    \LT@warn{Table \@width s have changed. Rerun LaTeX.\@gobbletwo}}%
+  \global\let\LT@final@warn\relax}
+\DeclareOption{errorshow}{%
+  \def\LT@warn{\PackageInfo{longtable}}}
+\DeclareOption{pausing}{%
+  \def\LT@warn#1{%
+    \LT@err{#1}{This is not really an error}}}
+\DeclareOption{set}{}
+\DeclareOption{final}{}
+\ProcessOptions
+\newskip\LTleft       \LTleft=\fill
+\newskip\LTright      \LTright=\fill
+\newskip\LTpre        \LTpre=\bigskipamount
+\newskip\LTpost       \LTpost=\bigskipamount
+\newcount\LTchunksize \LTchunksize=20
+\let\c@LTchunksize\LTchunksize
+\newdimen\LTcapwidth  \LTcapwidth=4in
+\newbox\LT@head
+\newbox\LT@firsthead
+\newbox\LT@foot
+\newbox\LT@lastfoot
+\newcount\LT@cols
+\newcount\LT@rows
+\newcounter{LT@tables}
+\newcounter{LT@chunks}[LT@tables]
+\ifx\c@table\undefined
+  \newcounter{table}
+  \def\fnum@table{\tablename~\thetable}
+\fi
+\ifx\tablename\undefined
+  \def\tablename{Table}
+\fi
+\newtoks\LT@p@ftn
+\mathchardef\LT@end@pen=30000
+\def\longtable{%
+  \par
+  \ifx\multicols\@undefined
+  \else
+     \ifnum\col@number>\@ne
+       \@twocolumntrue
+     \fi
+  \fi
+  \if@twocolumn
+    \LT@err{longtable not in 1-column mode}\@ehc
+  \fi
+  \begingroup
+  \@ifnextchar[\LT@array{\LT@array[x]}}
+\def\LT@array[#1]#2{%
+  \refstepcounter{table}\stepcounter{LT@tables}%
+  \if l#1%
+    \LTleft\z@ \LTright\fill
+  \else\if r#1%
+    \LTleft\fill \LTright\z@
+  \else\if c#1%
+    \LTleft\fill \LTright\fill
+  \fi\fi\fi
+  \let\LT@mcol\multicolumn
+  \let\LT@@tabarray\@tabarray
+  \let\LT@@hl\hline
+  \def\@tabarray{%
+    \let\hline\LT@@hl
+    \LT@@tabarray}%
+  \let\\\LT@tabularcr\let\tabularnewline\\%
+  \def\newpage{\noalign{\break}}%
+  \def\pagebreak{\noalign{\ifnum`}=0\fi\@testopt{\LT@no@pgbk-}4}%
+  \def\nopagebreak{\noalign{\ifnum`}=0\fi\@testopt\LT@no@pgbk4}%
+  \let\hline\LT@hline \let\kill\LT@kill\let\caption\LT@caption
+  \@tempdima\ht\strutbox
+  \let\@endpbox\LT@endpbox
+  \ifx\extrarowheight\@undefined
+    \let\@acol\@tabacol
+    \let\@classz\@tabclassz \let\@classiv\@tabclassiv
+    \def\@startpbox{\vtop\LT@startpbox}%
+    \let\@@startpbox\@startpbox
+    \let\@@endpbox\@endpbox
+    \let\LT@LL@FM@cr\@tabularcr
+  \else
+    \advance\@tempdima\extrarowheight
+    \col@sep\tabcolsep
+    \let\@startpbox\LT@startpbox\let\LT@LL@FM@cr\@arraycr
+  \fi
+  \setbox\@arstrutbox\hbox{\vrule
+    \@height \arraystretch \@tempdima
+    \@depth \arraystretch \dp \strutbox
+    \@width \z@}%
+  \let\@sharp##\let\protect\relax
+   \begingroup
+    \@mkpream{#2}%
+    \xdef\LT@bchunk{%
+       \global\advance\c@LT@chunks\@ne
+       \global\LT@rows\z@\setbox\z@\vbox\bgroup
+       \LT@setprevdepth
+       \tabskip\LTleft \noexpand\halign to\hsize\bgroup
+      \tabskip\z@ \@arstrut \@preamble \tabskip\LTright \cr}%
+  \endgroup
+  \expandafter\LT@nofcols\LT@bchunk&\LT@nofcols
+  \LT@make@row
+  \m@th\let\par\@empty
+  \everycr{}\lineskip\z@\baselineskip\z@
+  \LT@bchunk}
+\def\LT@no@pgbk#1[#2]{\penalty #1\@getpen{#2}\ifnum`{=0\fi}}
+\def\LT@start{%
+  \let\LT@start\endgraf
+  \endgraf\penalty\z@\vskip\LTpre
+  \dimen@\pagetotal
+  \advance\dimen@ \ht\ifvoid\LT@firsthead\LT@head\else\LT@firsthead\fi
+  \advance\dimen@ \dp\ifvoid\LT@firsthead\LT@head\else\LT@firsthead\fi
+  \advance\dimen@ \ht\LT@foot
+  \dimen@ii\vfuzz
+  \vfuzz\maxdimen
+    \setbox\tw@\copy\z@
+    \setbox\tw@\vsplit\tw@ to \ht\@arstrutbox
+    \setbox\tw@\vbox{\unvbox\tw@}%
+  \vfuzz\dimen@ii
+  \advance\dimen@ \ht
+        \ifdim\ht\@arstrutbox>\ht\tw@\@arstrutbox\else\tw@\fi
+  \advance\dimen@\dp
+        \ifdim\dp\@arstrutbox>\dp\tw@\@arstrutbox\else\tw@\fi
+  \advance\dimen@ -\pagegoal
+  \ifdim \dimen@>\z@\vfil\break\fi
+      \global\@colroom\@colht
+  \ifvoid\LT@foot\else
+    \advance\vsize-\ht\LT@foot
+    \global\advance\@colroom-\ht\LT@foot
+    \dimen@\pagegoal\advance\dimen@-\ht\LT@foot\pagegoal\dimen@
+    \maxdepth\z@
+  \fi
+  \ifvoid\LT@firsthead\copy\LT@head\else\box\LT@firsthead\fi\nobreak
+  \output{\LT@output}}
+\def\endlongtable{%
+  \crcr
+  \noalign{%
+    \let\LT@entry\LT@entry@chop
+    \xdef\LT@save@row{\LT@save@row}}%
+  \LT@echunk
+  \LT@start
+  \unvbox\z@
+  \LT@get@widths
+  \if@filesw
+    {\let\LT@entry\LT@entry@write\immediate\write\@auxout{%
+      \gdef\expandafter\noexpand
+        \csname LT@\romannumeral\c@LT@tables\endcsname
+          {\LT@save@row}}}%
+  \fi
+  \ifx\LT@save@row\LT@@save@row
+  \else
+    \LT@warn{Column \@width s have changed\MessageBreak
+             in table \thetable}%
+    \LT@final@warn
+  \fi
+  \endgraf\penalty -\LT@end@pen
+  \endgroup
+  \global\@mparbottom\z@
+  \pagegoal\vsize
+  \endgraf\penalty\z@\addvspace\LTpost
+  \ifvoid\footins\else\insert\footins{}\fi}
+\def\LT@nofcols#1&{%
+  \futurelet\@let@token\LT@n@fcols}
+\def\LT@n@fcols{%
+  \advance\LT@cols\@ne
+  \ifx\@let@token\LT@nofcols
+    \expandafter\@gobble
+  \else
+    \expandafter\LT@nofcols
+  \fi}
+\def\LT@tabularcr{%
+  \relax\iffalse{\fi\ifnum0=`}\fi
+  \@ifstar
+    {\def\crcr{\LT@crcr\noalign{\nobreak}}\let\cr\crcr
+     \LT@t@bularcr}%
+    {\LT@t@bularcr}}
+\let\LT@crcr\crcr
+\let\LT@setprevdepth\relax
+\def\LT@t@bularcr{%
+  \global\advance\LT@rows\@ne
+  \ifnum\LT@rows=\LTchunksize
+    \gdef\LT@setprevdepth{%
+      \prevdepth\z@\global
+      \global\let\LT@setprevdepth\relax}%
+    \expandafter\LT@xtabularcr
+  \else
+    \ifnum0=`{}\fi
+    \expandafter\LT@LL@FM@cr
+  \fi}
+\def\LT@xtabularcr{%
+  \@ifnextchar[\LT@argtabularcr\LT@ntabularcr}
+\def\LT@ntabularcr{%
+  \ifnum0=`{}\fi
+  \LT@echunk
+  \LT@start
+  \unvbox\z@
+  \LT@get@widths
+  \LT@bchunk}
+\def\LT@argtabularcr[#1]{%
+  \ifnum0=`{}\fi
+  \ifdim #1>\z@
+    \unskip\@xargarraycr{#1}%
+  \else
+    \@yargarraycr{#1}%
+  \fi
+  \LT@echunk
+  \LT@start
+  \unvbox\z@
+  \LT@get@widths
+  \LT@bchunk}
+\def\LT@echunk{%
+  \crcr\LT@save@row\cr\egroup
+  \global\setbox\@ne\lastbox
+    \unskip
+  \egroup}
+\def\LT@entry#1#2{%
+  \ifhmode\@firstofone{&}\fi\omit
+  \ifnum#1=\c@LT@chunks
+  \else
+    \kern#2\relax
+  \fi}
+\def\LT@entry@chop#1#2{%
+  \noexpand\LT@entry
+    {\ifnum#1>\c@LT@chunks
+       1}{0pt%
+     \else
+       #1}{#2%
+     \fi}}
+\def\LT@entry@write{%
+  \noexpand\LT@entry^^J%
+  \@spaces}
+\def\LT@kill{%
+  \LT@echunk
+  \LT@get@widths
+  \expandafter\LT@rebox\LT@bchunk}
+\def\LT@rebox#1\bgroup{%
+  #1\bgroup
+  \unvbox\z@
+  \unskip
+  \setbox\z@\lastbox}
+\def\LT@blank@row{%
+  \xdef\LT@save@row{\expandafter\LT@build@blank
+    \romannumeral\number\LT@cols 001 }}
+\def\LT@build@blank#1{%
+  \if#1m%
+    \noexpand\LT@entry{1}{0pt}%
+    \expandafter\LT@build@blank
+  \fi}
+\def\LT@make@row{%
+  \global\expandafter\let\expandafter\LT@save@row
+    \csname LT@\romannumeral\c@LT@tables\endcsname
+  \ifx\LT@save@row\relax
+    \LT@blank@row
+  \else
+    {\let\LT@entry\or
+     \if!%
+         \ifcase\expandafter\expandafter\expandafter\LT@cols
+         \expandafter\@gobble\LT@save@row
+         \or
+         \else
+           \relax
+         \fi
+        !%
+     \else
+       \aftergroup\LT@blank@row
+     \fi}%
+  \fi}
+\let\setlongtables\relax
+\def\LT@get@widths{%
+  \setbox\tw@\hbox{%
+    \unhbox\@ne
+    \let\LT@old@row\LT@save@row
+    \global\let\LT@save@row\@empty
+    \count@\LT@cols
+    \loop
+      \unskip
+      \setbox\tw@\lastbox
+    \ifhbox\tw@
+      \LT@def@row
+      \advance\count@\m@ne
+    \repeat}%
+  \ifx\LT@@save@row\@undefined
+    \let\LT@@save@row\LT@save@row
+  \fi}
+\def\LT@def@row{%
+  \let\LT@entry\or
+  \edef\@tempa{%
+    \ifcase\expandafter\count@\LT@old@row
+    \else
+      {1}{0pt}%
+    \fi}%
+  \let\LT@entry\relax
+  \xdef\LT@save@row{%
+    \LT@entry
+    \expandafter\LT@max@sel\@tempa
+    \LT@save@row}}
+\def\LT@max@sel#1#2{%
+  {\ifdim#2=\wd\tw@
+     #1%
+   \else
+     \number\c@LT@chunks
+   \fi}%
+  {\the\wd\tw@}}
+\def\LT@hline{%
+  \noalign{\ifnum0=`}\fi
+    \penalty\@M
+    \futurelet\@let@token\LT@@hline}
+\def\LT@@hline{%
+  \ifx\@let@token\hline
+    \global\let\@gtempa\@gobble
+    \gdef\LT@sep{\penalty-\@medpenalty\vskip\doublerulesep}%
+  \else
+    \global\let\@gtempa\@empty
+    \gdef\LT@sep{\penalty-\@lowpenalty\vskip-\arrayrulewidth}%
+  \fi
+  \ifnum0=`{\fi}%
+  \multispan\LT@cols
+     \unskip\leaders\hrule\@height\arrayrulewidth\hfill\cr
+  \noalign{\LT@sep}%
+  \multispan\LT@cols
+     \unskip\leaders\hrule\@height\arrayrulewidth\hfill\cr
+  \noalign{\penalty\@M}%
+  \@gtempa}
+\def\LT@caption{%
+  \noalign\bgroup
+    \@ifnextchar[{\egroup\LT@c@ption\@firstofone}\LT@capti@n}
+\def\LT@c@ption#1[#2]#3{%
+  \LT@makecaption#1\fnum@table{#3}%
+  \def\@tempa{#2}%
+  \ifx\@tempa\@empty\else
+     {\let\\\space
+     \addcontentsline{lot}{table}{\protect\numberline{\thetable}{#2}}}%
+  \fi}
+\def\LT@capti@n{%
+  \@ifstar
+    {\egroup\LT@c@ption\@gobble[]}%
+    {\egroup\@xdblarg{\LT@c@ption\@firstofone}}}
+\def\LT@makecaption#1#2#3{%
+  \LT@mcol\LT@cols c{\hbox to\z@{\hss\parbox[t]\LTcapwidth{%
+    \sbox\@tempboxa{#1{#2: }#3}%
+    \ifdim\wd\@tempboxa>\hsize
+      #1{#2: }#3%
+    \else
+      \hbox to\hsize{\hfil\box\@tempboxa\hfil}%
+    \fi
+    \endgraf\vskip\baselineskip}%
+  \hss}}}
+\def\LT@output{%
+  \ifnum\outputpenalty <-\@Mi
+    \ifnum\outputpenalty > -\LT@end@pen
+      \LT@err{floats and marginpars not allowed in a longtable}\@ehc
+    \else
+      \setbox\z@\vbox{\unvbox\@cclv}%
+      \ifdim \ht\LT@lastfoot>\ht\LT@foot
+        \dimen@\pagegoal
+        \advance\dimen@-\ht\LT@lastfoot
+        \ifdim\dimen@<\ht\z@
+          \setbox\@cclv\vbox{\unvbox\z@\copy\LT@foot\vss}%
+          \@makecol
+          \@outputpage
+          \setbox\z@\vbox{\box\LT@head}%
+        \fi
+      \fi
+      \global\@colroom\@colht
+      \global\vsize\@colht
+      \vbox
+        {\unvbox\z@\box\ifvoid\LT@lastfoot\LT@foot\else\LT@lastfoot\fi}%
+    \fi
+  \else
+    \setbox\@cclv\vbox{\unvbox\@cclv\copy\LT@foot\vss}%
+    \@makecol
+    \@outputpage
+      \global\vsize\@colroom
+    \copy\LT@head\nobreak
+  \fi}
+\def\LT@end@hd@ft#1{%
+  \LT@echunk
+  \ifx\LT@start\endgraf
+    \LT@err
+     {Longtable head or foot not at start of table}%
+     {Increase LTchunksize}%
+  \fi
+  \setbox#1\box\z@
+  \LT@get@widths
+  \LT@bchunk}
+\def\endfirsthead{\LT@end@hd@ft\LT@firsthead}
+\def\endhead{\LT@end@hd@ft\LT@head}
+\def\endfoot{\LT@end@hd@ft\LT@foot}
+\def\endlastfoot{\LT@end@hd@ft\LT@lastfoot}
+\def\LT@startpbox#1{%
+  \bgroup
+    \let\@footnotetext\LT@p@ftntext
+    \setlength\hsize{#1}%
+    \@arrayparboxrestore
+    \vrule \@height \ht\@arstrutbox \@width \z@}
+\def\LT@endpbox{%
+  \@finalstrut\@arstrutbox
+  \egroup
+  \the\LT@p@ftn
+  \global\LT@p@ftn{}%
+  \hfil}
+\def\LT@p@ftntext#1{%
+  \edef\@tempa{\the\LT@p@ftn\noexpand\footnotetext[\the\c@footnote]}%
+  \global\LT@p@ftn\expandafter{\@tempa{#1}}}%
+
+\@namedef{ver@longtable.sty}{2014/10/28 v4.11 Multi-page Table package (DPC) - frozen version for doxygen}
+\endinput
+%%
+%% End of file `longtable.sty'.
diff --git a/docs/latex/md__r_e_a_d_m_e.tex b/docs/latex/md__r_e_a_d_m_e.tex
new file mode 100644
index 00000000..dedbcb47
--- /dev/null
+++ b/docs/latex/md__r_e_a_d_m_e.tex
@@ -0,0 +1,155 @@
+E\+X\+O\+NA has been developed to compile using C\+Make, which should be installed before attempting to compile. To use the M\+PI version, a version of M\+PI (such as Open\+M\+PI) should be installed. \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} currently requires libtiff and libpng The \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} algorithm can also checkpoint to a database, however this is not required. To enable this I recommend installing libmysql-\/dev via apt-\/get on Linux systems, or mysql via \href{https://brew.sh}{\texttt{ homebrew}} on O\+SX. Other than that, E\+X\+A\+C\+T/\+E\+X\+A\+L\+T/\+E\+X\+A\+MM has no prerequesites other than c++11 compatible compiler.
+
+If you are using O\+SX, to set up the environment\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{\$ brew install cmake}
+\DoxyCodeLine{\$ brew install mysql}
+\DoxyCodeLine{\$ xcode-\/select -\/-\/install}
+\end{DoxyCode}
+
+
+To build\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{\string~/exact \$ mkdir build}
+\DoxyCodeLine{\string~/exact \$ cd build}
+\DoxyCodeLine{\string~/exact/build \$ cmake ..}
+\DoxyCodeLine{\string~/exact/build \$ make}
+\end{DoxyCode}
+
+
+You may also want to have graphviz installed so you can generate images of the evolved neural networks. E\+X\+A\+C\+T/\+E\+X\+A\+L\+T/\+E\+X\+A\+MM will write out evolved genomes in a .gv (graphviz) format for this. For example, can generate a pdf from a gv file (assuming graphviz is installed with)\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{\$ dot -\/Tpdf genome.gv -\/o genome.pdf}
+\end{DoxyCode}
+\hypertarget{md__r_e_a_d_m_e_autotoc_md1}{}\doxysection{E\+X\+A\+M\+M\+: Evolutionary e\+Xploration of Augmenting Memory Models and E\+X\+A\+L\+T\+: Evolutionary e\+Xploration of Augmenting L\+S\+T\+M Topologies}\label{md__r_e_a_d_m_e_autotoc_md1}
+Source code for E\+X\+A\+L\+T/\+E\+X\+A\+MM can be found in the rnn subdirectory. E\+X\+A\+LT has been enhanced with the ability to utilize more recurrent memory cells and has been renamed \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}}. The memory cells currently implemented are Delta-\/\+R\+NN, G\+RU, L\+S\+TM, M\+GU, and U\+G\+R\+N\+Ns. Some example time series data has been provided as part of two publications on E\+X\+A\+LT and \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}}, which also provide implementation details\+:
+
+
+\begin{DoxyEnumerate}
+\item Alex Ororbia, Abd\+El\+Rahman El\+Said, and Travis Desell. {\bfseries{\href{https://dl.acm.org/citation.cfm?id=3321795}{\texttt{ Investigating Recurrent Neural Network Memory Structures using Neuro-\/\+Evolution}}.}} {\itshape The Genetic and Evolutionary Computation Conference (G\+E\+C\+CO 2019).} Prague, Czech Republic. July 8-\/12, 2019.
+\item Abd\+El\+Rahman El\+Said, Steven Benson, Shuchita Patwardhan, David Stadem and Travis Desell. {\bfseries{\href{https://link.springer.com/chapter/10.1007/978-3-030-16692-2_33}{\texttt{ Evolving Recurrent Neural Networks for Time Series Data Prediction of Coal Plant Parameters}}.}} {\itshape The 22nd International Conference on the Applications of Evolutionary Computation (Evo\+Star\+: Evo\+Apps 2019).} Leipzig, Germany. April 24-\/26, 2019.
+\end{DoxyEnumerate}
+
+These datasets can be found in the {\itshape datasets} directory, and provide example C\+SV files which you can use with \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}}. \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} can be run in two different ways, a multithreaded version\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{./multithreaded/examm\_mt -\/-\/number\_threads 9 -\/-\/training\_filenames ../datasets/2018\_coal/burner\_[0-\/9].csv -\/-\/test\_filenames ../datasets/2018\_coal/burner\_1[0-\/1].csv -\/-\/time\_offset 1 -\/-\/input\_parameter\_names Conditioner\_Inlet\_Temp Conditioner\_Outlet\_Temp Coal\_Feeder\_Rate Primary\_Air\_Flow Primary\_Air\_Split System\_Secondary\_Air\_Flow\_Total Secondary\_Air\_Flow Secondary\_Air\_Split Tertiary\_Air\_Split Total\_Comb\_Air\_Flow Supp\_Fuel\_Flow Main\_Flm\_Int -\/-\/output\_parameter\_names Main\_Flm\_Int -\/-\/number\_islands 10 -\/-\/population\_size 10 -\/-\/max\_genomes 2000 -\/-\/bp\_iterations 10 -\/-\/output\_directory "./test\_output" -\/-\/possible\_node\_types simple UGRNN MGU GRU delta LSTM -\/-\/std\_message\_level INFO -\/-\/file\_message\_level INFO}
+\end{DoxyCode}
+
+
+And a parallel version using M\+PI\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{\string~/exact/build/ \$ mpirun -\/np 9 ./mpi/examm\_mpi -\/-\/training\_filenames ../datasets/2018\_coal/burner\_[0-\/9].csv -\/-\/test\_filenames ../datasets/2018\_coal/burner\_1[0-\/1].csv -\/-\/time\_offset 1 -\/-\/input\_parameter\_names Conditioner\_Inlet\_Temp Conditioner\_Outlet\_Temp Coal\_Feeder\_Rate Primary\_Air\_Flow Primary\_Air\_Split System\_Secondary\_Air\_Flow\_Total Secondary\_Air\_Flow Secondary\_Air\_Split Tertiary\_Air\_Split Total\_Comb\_Air\_Flow Supp\_Fuel\_Flow Main\_Flm\_Int -\/-\/output\_parameter\_names Main\_Flm\_Int -\/-\/number\_islands 10 -\/-\/population\_size 10 -\/-\/max\_genomes 2000 -\/-\/bp\_iterations 10 -\/-\/output\_directory "./test\_output" -\/-\/possible\_node\_types simple UGRNN MGU GRU delta LSTM -\/-\/std\_message\_level INFO -\/-\/file\_message\_level INFO}
+\end{DoxyCode}
+
+
+Which will run \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} with 9 threads or 9 processes, respectively. Note that \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} uses one thread/process as the master and this typically just waits on the results of backprop so you if you have 8 processors/cores available you can usually run \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} with 9 processes/threads for better performance. A performance log of \mbox{\hyperlink{class_r_n_n}{R\+NN}} fitnesses will be exported into fitness\+\_\+log.\+csv, as well as the best found R\+N\+Ns into the specified output directory, in this case $\ast$./test\+\_\+output$\ast$. You can control the level of message logging for standard output with {\itshape --std\+\_\+message\+\_\+level} (options are N\+O\+NE, F\+A\+T\+AL, E\+R\+R\+OR, W\+A\+R\+N\+I\+NG, I\+N\+FO, D\+E\+B\+UG, T\+R\+A\+CE and A\+LL) and message logging to files (which will be placed in the output directory) with {\itshape --file\+\_\+message\+\_\+level}. Separate logging files will be made for each thread/process.
+
+The aviation data can be run similarly, however it the data should be normalized first (which can be done with the {\itshape --normalize} command line parameter), e.\+g.\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{./multithreaded/examm\_mt -\/-\/number\_threads 9 -\/-\/training\_filenames ../datasets/2018\_ngafid/flight\_[0-\/7].csv -\/-\/test\_filenames ../datasets/2018\_ngafid/flight\_[8-\/9].csv -\/-\/time\_offset 1 -\/-\/input\_parameter\_names "AltAGL" "E1 CHT1" "E1 CHT2" "E1 CHT3" "E1 CHT4" "E1 EGT1" "E1 EGT2" "E1 EGT3" "E1 EGT4" "E1 OilP" "E1 OilT" "E1 RPM" "FQtyL" "FQtyR" "GndSpd" "IAS" "LatAc" "NormAc" "OAT" "Pitch" "Roll" "TAS" "volt1" "volt2" "VSpd" "VSpdG" -\/-\/output\_parameter\_names Pitch -\/-\/number\_islands 10 -\/-\/population\_size 10 -\/-\/max\_genomes 2000 -\/-\/bp\_iterations 10 -\/-\/output\_directory "./test\_output" -\/-\/possible\_node\_types simple UGRNN MGU GRU delta LSTM -\/-\/normalize -\/-\/std\_message\_level INFO -\/-\/file\_message\_level INFO}
+\end{DoxyCode}
+
+
+The {\itshape --time\+\_\+offset} parameter specifies how many time steps in the future \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} should predict for the output parameter(s). The {\itshape --number\+\_\+islands} is the number of islands of populations that \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} will use, and the {\itshape --population\+\_\+size} parameter specifies how many individuals/genomes are in each island. The {\itshape --bp\+\_\+iterations} specifies how many epochs/iterations backpropagation should be run for each generated \mbox{\hyperlink{class_r_n_n}{R\+NN}} genome.
+
+The\hypertarget{md__r_e_a_d_m_e_autotoc_md2}{}\doxysection{E\+X\+A\+C\+T\+: Evolutionary Exploration of Augmenting Convolutional Topologies}\label{md__r_e_a_d_m_e_autotoc_md2}
+This repository provides source code for the Evolutionary Exploration of Augmenting Convolutional Topologies algorithm. This algorithm progressively evolves convolutional neural networks for image classification problems. The algorithm is asychronous, which allows for easy multithreading and parallelization. Code is provided for running \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} as a B\+O\+I\+NC volunteer computing project, on a cluster or supercomputer using M\+PI or on a desktop or laptop using threads.
+
+We\textquotesingle{}ve built and run \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} on both an Ubuntu Linux high performance computing cluser and O\+SX laptops and desktops. We have not tried it on Windows. If there are issues with the C\+Make scripts please let us know and we\textquotesingle{}ll update them.
+
+If you want to set this up on your own B\+O\+I\+NC volunteer computing project, we recommend sending us an email as this is a rather complicated process.
+
+For more information on \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} please see our following publications\+:
+
+
+\begin{DoxyEnumerate}
+\item Travis Desell. {\bfseries{\href{https://arxiv.org/abs/1811.08286}{\texttt{ Accelerating the Evolution of Convolutional Neural Networks with Node-\/\+Level Mutations and Epigenetic Weight Initialization}}.}} {\itshape ar\+Xiv\+: Neural and Evolutionary Computing (cs.\+NE).} November, 2018.
+\item Travis Desell. {\bfseries{\href{https://ieeexplore.ieee.org/document/8109119}{\texttt{ Developing a Volunteer Computing Project to Evolve Convolutional Neural Networks and Their Hyperparameters}}.}} {\itshape The 13th I\+E\+EE International Conference on e\+Science (e\+Science 2017).} Auckland, New Zealand. October 24-\/27 2017.
+\end{DoxyEnumerate}\hypertarget{md__r_e_a_d_m_e_autotoc_md3}{}\doxysubsection{Setting up Training and Testing Data}\label{md__r_e_a_d_m_e_autotoc_md3}
+This version \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} is set up to run using the \href{http://yann.lecun.com/exdb/mnist/}{\texttt{ M\+N\+I\+ST Handwritten Digits Dataset}}. However it expects a different data format where the images and labels are combined. You can download the data and convert it as follows\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{\string~/exact \$ mkdir datasets}
+\DoxyCodeLine{\string~/exact \$ cd datasets}
+\DoxyCodeLine{}
+\DoxyCodeLine{\string~/exact/datasets \$ wget http://yann.lecun.com/exdb/mnist/train-\/images-\/idx3-\/ubyte.gz}
+\DoxyCodeLine{\string~/exact/datasets \$ wget http://yann.lecun.com/exdb/mnist/train-\/labels-\/idx1-\/ubyte.gz}
+\DoxyCodeLine{\string~/exact/datasets \$ wget http://yann.lecun.com/exdb/mnist/t10k-\/images-\/idx3-\/ubyte.gz}
+\DoxyCodeLine{\string~/exact/datasets \$ wget http://yann.lecun.com/exdb/mnist/t10k-\/labels-\/idx1-\/ubyte.gz}
+\DoxyCodeLine{}
+\DoxyCodeLine{\string~/exact/datasets \$ unzip train-\/images-\/idx3-\/ubyte.gz}
+\DoxyCodeLine{\string~/exact/datasets \$ unzip train-\/labels-\/idx1-\/ubyte.gz}
+\DoxyCodeLine{\string~/exact/datasets \$ unzip t10k-\/images-\/idx3-\/ubyte.gz}
+\DoxyCodeLine{\string~/exact/datasets \$ unzip t10k-\/labels-\/idx1-\/ubyte.gz}
+\DoxyCodeLine{}
+\DoxyCodeLine{\string~/exact/datasets \$ cd ../build}
+\DoxyCodeLine{\string~/exact/build \$ ./image\_tools/convert\_mnist\_data ../datasets/train-\/images-\/idx3-\/ubyte ../datasets/train-\/labels-\/idx1-\/ubyte ../datasets/mnist\_training\_data.bin 60000}
+\DoxyCodeLine{\string~/exact/build \$ ./image\_tools/convert\_mnist\_data ../datasets/t10k-\/images-\/idx3-\/ubyte ../datasets/t10k-\/labels-\/idx1-\/ubyte ../datasets/mnist\_testing\_data.bin 10000}
+\end{DoxyCode}
+
+
+You can also split up either the training or test data to add a third dataset of validation images for more robust analysis, e.\+g., so you can train on one set, use the validation set to determine the best C\+N\+Ns for \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} to keep, and then after the evolution process is completed you can test the best found genome(s) on the test set which has not been seen before. You can split up the M\+N\+I\+ST training data into a 50k training set and 10k validation set as follows\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{\string~/exact/build/ \$ ./image\_tools/split\_mnist\_data ../datasets/train-\/images-\/idx3-\/ubyte ../datasets/train-\/labels-\/idx1-\/ubyte ../datasets/mnist\_train\_50k.bin ../datasets/mnist\_validation\_10k.bin 60000 1000}
+\end{DoxyCode}
+
+
+Where the usage is\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{./image\_tools/split\_mnist\_data <mnist image file> <mnist label file> <output training file> <output validation file> <expected number of images> <validation images per label>}
+\end{DoxyCode}
+
+
+So this will take 1000 images of each type from the training data and put them into the specified validation file ({\itshape mnist\+\_\+validation\+\_\+10k.\+bin}) and the rest of the images will be in the training set ({\itshape mnist\+\_\+train\+\_\+50k.\+bin}).\hypertarget{md__r_e_a_d_m_e_autotoc_md4}{}\doxysubsection{Running E\+X\+A\+CT}\label{md__r_e_a_d_m_e_autotoc_md4}
+You can then run \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} in a similar manner to \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}}, either using threads or M\+PI. For the threaded version\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{\string~/exact/build/ \$ ./multithreaded/exact\_mt -\/-\/number\_threads 9 -\/-\/padding 2 -\/-\/training\_file ../datasets/mnist\_train\_50k.bin -\/-\/validation\_file ../datasets/mnist\_validation\_10k.bin  -\/-\/testing\_file ../datasets/mnist\_testing\_data.bin -\/-\/population\_size 30 -\/-\/max\_epochs 5 -\/-\/use\_sfmp 1 -\/-\/use\_node\_operations 1 -\/-\/max\_genomes 1000 -\/-\/output\_directory ./test\_exact -\/-\/search\_name "test" -\/-\/reset\_edges 0 -\/-\/images\_resize 50000}
+\end{DoxyCode}
+
+
+And for the M\+PI version\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{\string~/exact/build/ \$ mpirun -\/np 9 ./mpi/exact\_mpi -\/-\/padding 2 -\/-\/training\_file ../datasets/mnist\_train\_50k.bin -\/-\/validation\_file ../datasets/mnist\_validation\_10k.bin  -\/-\/testing\_file ../datasets/mnist\_testing\_data.bin -\/-\/population\_size 30 -\/-\/max\_epochs 5 -\/-\/use\_sfmp 1 -\/-\/use\_node\_operations 1 -\/-\/max\_genomes 1000 -\/-\/output\_directory ./test\_exact -\/-\/search\_name "test" -\/-\/reset\_edges 0 -\/-\/images\_resize 50000}
+\end{DoxyCode}
+
+
+Which will run \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} with 9 threads or processes, respectively. The {\itshape --use\+\_\+sfmp} argument turns on or off scaled fractional max pooling (which allows for pooling operations between feature maps of any size), the {\itshape --use\+\_\+node\+\_\+operations} argument turns on or off node level mutations (see the \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} and \mbox{\hyperlink{class_e_x_a_m_m}{E\+X\+A\+MM}} papers), the {\itshape --reset\+\_\+edges} parameter turns on or off Lamarckian weight evolution (turning it on will evolve and train networks faster) and the {\itshape --images\+\_\+resize} parameter allows \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} to train C\+N\+Ns on a subset of the training data to speed the evolution process (e.\+g., --images\+\_\+resize 5000 would train each C\+NN on a different subset of 5k images from the training data, as opposed to the full 50k).\hypertarget{md__r_e_a_d_m_e_autotoc_md5}{}\doxysubsection{Example Genomes from G\+E\+C\+C\+O 2017}\label{md__r_e_a_d_m_e_autotoc_md5}
+Our submission to G\+E\+C\+CO describes a set of best found genomes for the M\+N\+I\+ST handwritten digits dataset. These can be found in the genomes subdirectory of the project. Please checkout the tag for the G\+E\+C\+CO paper to use the version of \mbox{\hyperlink{class_e_x_a_c_t}{E\+X\+A\+CT}} these C\+NN genome files were generated with\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{git checkout -\/b exact\_gecco gecco\_2017}
+\end{DoxyCode}
+
+
+After compiling this version and setting up the M\+N\+I\+ST training and testing data as described in the previous section, these genomes can be run over the training and testing data for validation as follows\+:
+
+
+\begin{DoxyCode}{0}
+\DoxyCodeLine{\string~/exact/build/ \$ ./tests/evaluate\_cnn -\/-\/training\_data ../datasets/mnist\_training\_data.bin -\/-\/testing\_data ../datasets/mnist\_testing\_data.bin -\/-\/genome\_file ../genomes/genome\_46823}
+\DoxyCodeLine{\string~/exact/build/ \$ ./tests/evaluate\_cnn -\/-\/training\_data ../datasets/mnist\_training\_data.bin -\/-\/testing\_data ../datasets/mnist\_testing\_data.bin -\/-\/genome\_file ../genomes/genome\_57302}
+\DoxyCodeLine{\string~/exact/build/ \$ ./tests/evaluate\_cnn -\/-\/training\_data ../datasets/mnist\_training\_data.bin -\/-\/testing\_data ../datasets/mnist\_testing\_data.bin -\/-\/genome\_file ../genomes/genome\_59455}
+\DoxyCodeLine{\string~/exact/build/ \$ ./tests/evaluate\_cnn -\/-\/training\_data ../datasets/mnist\_training\_data.bin -\/-\/testing\_data ../datasets/mnist\_testing\_data.bin -\/-\/genome\_file ../genomes/genome\_59920}
+\end{DoxyCode}
+ 
\ No newline at end of file
diff --git a/docs/latex/namespaceplot__multi__time__series.tex b/docs/latex/namespaceplot__multi__time__series.tex
new file mode 100644
index 00000000..20b2871e
--- /dev/null
+++ b/docs/latex/namespaceplot__multi__time__series.tex
@@ -0,0 +1,54 @@
+\hypertarget{namespaceplot__multi__time__series}{}\doxysection{plot\+\_\+multi\+\_\+time\+\_\+series Namespace Reference}
+\label{namespaceplot__multi__time__series}\index{plot\_multi\_time\_series@{plot\_multi\_time\_series}}
+\doxysubsection*{Variables}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a97885b5fee72386f66a4ee6a763127eb}\label{namespaceplot__multi__time__series_a97885b5fee72386f66a4ee6a763127eb}} 
+{\bfseries csv\+\_\+filename} = sys.\+argv\mbox{[}1\mbox{]}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a92e6b9a89914d7f9da239fa5bbc1acfe}\label{namespaceplot__multi__time__series_a92e6b9a89914d7f9da239fa5bbc1acfe}} 
+{\bfseries parameter\+\_\+name} = sys.\+argv\mbox{[}2\mbox{]}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a4f43b211d6980967d37938bf82f23fa3}\label{namespaceplot__multi__time__series_a4f43b211d6980967d37938bf82f23fa3}} 
+{\bfseries xlabel\+\_\+name} = sys.\+argv\mbox{[}3\mbox{]}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_afcca6556fbb99c4fbd70bc121118c4dd}\label{namespaceplot__multi__time__series_afcca6556fbb99c4fbd70bc121118c4dd}} 
+{\bfseries output\+\_\+filename} = sys.\+argv\mbox{[}4\mbox{]}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a7dc670c7b7bfa2e141cf6d139b60c1aa}\label{namespaceplot__multi__time__series_a7dc670c7b7bfa2e141cf6d139b60c1aa}} 
+{\bfseries offsets} = sys.\+argv\mbox{[}5\+:\mbox{]}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a2e2a6c223dca82e734daffb0d74ad4d3}\label{namespaceplot__multi__time__series_a2e2a6c223dca82e734daffb0d74ad4d3}} 
+{\bfseries values} = genfromtxt(csv\+\_\+filename, delimiter=\char`\"{},\char`\"{})
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_aa698bc6b1ecc18309117c6adbc11d76c}\label{namespaceplot__multi__time__series_aa698bc6b1ecc18309117c6adbc11d76c}} 
+{\bfseries rows} = len(values)
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_aec8d4ebcb56e41ffc414583034915951}\label{namespaceplot__multi__time__series_aec8d4ebcb56e41ffc414583034915951}} 
+{\bfseries cols} = len(values\mbox{[}0\mbox{]})
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a0a178be487d773ac674426e6c9048a74}\label{namespaceplot__multi__time__series_a0a178be487d773ac674426e6c9048a74}} 
+{\bfseries figsize}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a7327695ce7e1f3f6b0a8ac72f329d86b}\label{namespaceplot__multi__time__series_a7327695ce7e1f3f6b0a8ac72f329d86b}} 
+{\bfseries label}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a612556db538d7e149f21512f77799395}\label{namespaceplot__multi__time__series_a612556db538d7e149f21512f77799395}} 
+{\bfseries linewidth}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a444969616e4eb0a685ce5d5f096a463f}\label{namespaceplot__multi__time__series_a444969616e4eb0a685ce5d5f096a463f}} 
+{\bfseries loc}
+\item 
+\mbox{\Hypertarget{namespaceplot__multi__time__series_a68da059582342c21aa9c664534182f7b}\label{namespaceplot__multi__time__series_a68da059582342c21aa9c664534182f7b}} 
+{\bfseries bbox\+\_\+inches}
+\end{DoxyCompactItemize}
+
+
+\doxysubsection{Detailed Description}
+\begin{DoxyVerb}usage examples:
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/net_plant_heat_rate_predictions.csv "Net Plant Heat Rate" "Hours" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/net_plant_heat_rate_multi.png 1 2 4 8
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/nose_gas_temperature_predictons.csv "Nose Gas Temperature" "Hours" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/nose_gas_temperature_multi.png 1 2 4 8
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_extra_3.csv "Flame Intensity (Plant ~ Fuel)" "Minutes" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_extra_3.png 1 15 30 60 120 240 480
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_plant_fuel_3.csv "Flame Intensity (Plant + Fuel)" "Minutes" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_plant_fuel_3.png 1 15 30 60 120 240 480
+    python plot_multi_time_series.py ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_plant_3.csv "Flame Intensity (Plant Only)" "Minutes" ~/Dropbox/1537\ MTI-RIT/2019_degruyter_results/flame_intensity_plant_3.png 1 15 30 60 120 240 480\end{DoxyVerb}
+ 
\ No newline at end of file
diff --git a/docs/latex/namespaces.tex b/docs/latex/namespaces.tex
new file mode 100644
index 00000000..a90967a3
--- /dev/null
+++ b/docs/latex/namespaces.tex
@@ -0,0 +1,4 @@
+\doxysection{Namespace List}
+Here is a list of all documented namespaces with brief descriptions\+:\begin{DoxyCompactList}
+\item\contentsline{section}{\mbox{\hyperlink{namespaceplot__multi__time__series}{plot\+\_\+multi\+\_\+time\+\_\+series}} }{\pageref{namespaceplot__multi__time__series}}{}
+\end{DoxyCompactList}
diff --git a/docs/latex/refman.tex b/docs/latex/refman.tex
new file mode 100644
index 00000000..a4b6b885
--- /dev/null
+++ b/docs/latex/refman.tex
@@ -0,0 +1,292 @@
+\let\mypdfximage\pdfximage\def\pdfximage{\immediate\mypdfximage}\documentclass[twoside]{book}
+
+%% moved from doxygen.sty due to workaround for LaTex 2019 version and unmaintained tabu package
+\usepackage{ifthen}
+\ifx\requestedLaTeXdate\undefined
+\usepackage{array}
+\else
+\usepackage{array}[=2016-10-06]
+\fi
+%%
+% Packages required by doxygen
+\usepackage{fixltx2e}
+\usepackage{calc}
+\usepackage{doxygen}
+\usepackage{graphicx}
+\usepackage[utf8]{inputenc}
+\usepackage{makeidx}
+\usepackage{multicol}
+\usepackage{multirow}
+\PassOptionsToPackage{warn}{textcomp}
+\usepackage{textcomp}
+\usepackage[nointegrals]{wasysym}
+\usepackage[table]{xcolor}
+\usepackage{ifpdf,ifxetex}
+
+% Font selection
+\usepackage[T1]{fontenc}
+\usepackage[scaled=.90]{helvet}
+\usepackage{courier}
+\usepackage{amssymb}
+\usepackage{sectsty}
+\renewcommand{\familydefault}{\sfdefault}
+\allsectionsfont{%
+  \fontseries{bc}\selectfont%
+  \color{darkgray}%
+}
+\renewcommand{\DoxyLabelFont}{%
+  \fontseries{bc}\selectfont%
+  \color{darkgray}%
+}
+\newcommand{\+}{\discretionary{\mbox{\scriptsize$\hookleftarrow$}}{}{}}
+
+% Arguments of doxygenemoji:
+% 1) ':<text>:' form of the emoji, already "LaTeX"-escaped
+% 2) file with the name of the emoji without the .png extension
+% in case image exist use this otherwise use the ':<text>:' form
+\newcommand{\doxygenemoji}[2]{%
+  \IfFileExists{./#2.png}{\raisebox{-0.1em}{\includegraphics[height=0.9em]{./#2.png}}}{#1}%
+}
+% Page & text layout
+\usepackage{geometry}
+\geometry{%
+  a4paper,%
+  top=2.5cm,%
+  bottom=2.5cm,%
+  left=2.5cm,%
+  right=2.5cm%
+}
+\tolerance=750
+\hfuzz=15pt
+\hbadness=750
+\setlength{\emergencystretch}{15pt}
+\setlength{\parindent}{0cm}
+\newcommand{\doxynormalparskip}{\setlength{\parskip}{3ex plus 2ex minus 2ex}}
+\newcommand{\doxytocparskip}{\setlength{\parskip}{1ex plus 0ex minus 0ex}}
+\doxynormalparskip
+\makeatletter
+\renewcommand{\paragraph}{%
+  \@startsection{paragraph}{4}{0ex}{-1.0ex}{1.0ex}{%
+    \normalfont\normalsize\bfseries\SS@parafont%
+  }%
+}
+\renewcommand{\subparagraph}{%
+  \@startsection{subparagraph}{5}{0ex}{-1.0ex}{1.0ex}{%
+    \normalfont\normalsize\bfseries\SS@subparafont%
+  }%
+}
+\makeatother
+
+\makeatletter
+\newcommand\hrulefilll{\leavevmode\leaders\hrule\hskip 0pt plus 1filll\kern\z@}
+\makeatother
+
+% Headers & footers
+\usepackage{fancyhdr}
+\pagestyle{fancyplain}
+\fancyhead[LE]{\fancyplain{}{\bfseries\thepage}}
+\fancyhead[CE]{\fancyplain{}{}}
+\fancyhead[RE]{\fancyplain{}{\bfseries\leftmark}}
+\fancyhead[LO]{\fancyplain{}{\bfseries\rightmark}}
+\fancyhead[CO]{\fancyplain{}{}}
+\fancyhead[RO]{\fancyplain{}{\bfseries\thepage}}
+\fancyfoot[LE]{\fancyplain{}{}}
+\fancyfoot[CE]{\fancyplain{}{}}
+\fancyfoot[RE]{\fancyplain{}{\bfseries\scriptsize Generated by Doxygen }}
+\fancyfoot[LO]{\fancyplain{}{\bfseries\scriptsize Generated by Doxygen }}
+\fancyfoot[CO]{\fancyplain{}{}}
+\fancyfoot[RO]{\fancyplain{}{}}
+\renewcommand{\footrulewidth}{0.4pt}
+\renewcommand{\chaptermark}[1]{%
+  \markboth{#1}{}%
+}
+\renewcommand{\sectionmark}[1]{%
+  \markright{\thesection\ #1}%
+}
+
+% Indices & bibliography
+\usepackage{natbib}
+\usepackage[titles]{tocloft}
+\setcounter{tocdepth}{3}
+\setcounter{secnumdepth}{5}
+\makeindex
+
+\usepackage{newunicodechar}
+  \newunicodechar{⁻}{${}^{-}$}% Superscript minus
+  \newunicodechar{²}{${}^{2}$}% Superscript two
+  \newunicodechar{³}{${}^{3}$}% Superscript three
+
+% Hyperlinks (required, but should be loaded last)
+\ifpdf
+  \usepackage[pdftex,pagebackref=true]{hyperref}
+\else
+  \ifxetex
+    \usepackage[pagebackref=true]{hyperref}
+  \else
+    \usepackage[ps2pdf,pagebackref=true]{hyperref}
+  \fi
+\fi
+
+\hypersetup{%
+  colorlinks=true,%
+  linkcolor=blue,%
+  citecolor=blue,%
+  unicode%
+}
+
+% Custom commands
+\newcommand{\clearemptydoublepage}{%
+  \newpage{\pagestyle{empty}\cleardoublepage}%
+}
+
+\usepackage{caption}
+\captionsetup{labelsep=space,justification=centering,font={bf},singlelinecheck=off,skip=4pt,position=top}
+
+\usepackage{etoc}
+\etocsettocstyle{\doxytocparskip}{\doxynormalparskip}
+\renewcommand{\numberline}[1]{#1~}
+%===== C O N T E N T S =====
+
+\begin{document}
+
+% Titlepage & ToC
+\hypersetup{pageanchor=false,
+             bookmarksnumbered=true,
+             pdfencoding=unicode
+            }
+\pagenumbering{alph}
+\begin{titlepage}
+\vspace*{7cm}
+\begin{center}%
+{\Large E\+X\+O\+NA\+: Evolutionary e\+Xploration of Neural Architectures }\\
+\vspace*{1cm}
+{\large Generated by Doxygen 1.8.17}\\
+\end{center}
+\end{titlepage}
+\clearemptydoublepage
+\pagenumbering{roman}
+\tableofcontents
+\clearemptydoublepage
+\pagenumbering{arabic}
+\hypersetup{pageanchor=true}
+
+%--- Begin generated contents ---
+\chapter{Getting Started and Prerequisites}
+\label{md__r_e_a_d_m_e}
+\Hypertarget{md__r_e_a_d_m_e}
+\input{md__r_e_a_d_m_e}
+\chapter{Namespace Index}
+\input{namespaces}
+\chapter{Hierarchical Index}
+\input{hierarchy}
+\chapter{Class Index}
+\input{annotated}
+\chapter{Namespace Documentation}
+\input{namespaceplot__multi__time__series}
+\chapter{Class Documentation}
+\input{class_c_n_n___edge}
+\input{class_c_n_n___genome}
+\input{class_c_n_n___node}
+\input{struct_coin}
+\input{struct_color}
+\input{struct_color_profile}
+\input{struct_color_tree}
+\input{classconfig__to__arg_1_1_config_to_arg}
+\input{class_consolidated_statistics}
+\input{class_corpus}
+\input{structcs__less__than__avg}
+\input{structcs__less__than__max}
+\input{structcs__less__than__min}
+\input{class_delta___node}
+\input{class_e_n_a_r_c___node}
+\input{class_e_n_a_s___d_a_g___node}
+\input{class_e_x_a_c_t}
+\input{struct_e_x_a_c_t___r_e_s_u_l_t}
+\input{class_e_x_a_m_m}
+\input{classexamm__task_1_1_examm_task}
+\input{class_g_r_u___node}
+\input{struct_hash}
+\input{struct_huffman_tree}
+\input{class_image}
+\input{class_image_interface}
+\input{class_images}
+\input{class_images_interface}
+\input{class_island}
+\input{classisland__purging__args_1_1_island_purging_args}
+\input{class_island_speciation_strategy}
+\input{class_large_image}
+\input{class_large_images}
+\input{structless__than__avg}
+\input{structless__than__dfm__avg}
+\input{structless__than__dfm__max}
+\input{structless__than__dfm__min}
+\input{structless__than__max}
+\input{structless__than__min}
+\input{class_line}
+\input{struct_lode_p_n_g_color_mode}
+\input{struct_lode_p_n_g_compress_settings}
+\input{struct_lode_p_n_g_decoder_settings}
+\input{struct_lode_p_n_g_decompress_settings}
+\input{struct_lode_p_n_g_encoder_settings}
+\input{struct_lode_p_n_g_info}
+\input{struct_lode_p_n_g_state}
+\input{struct_lode_p_n_g_time}
+\input{class_log}
+\input{class_log_file}
+\input{class_l_s_t_m___node}
+\input{class_m_g_u___node}
+\input{classmin__max__heap}
+\input{class_mosaic_images}
+\input{class_multi_images_interface}
+\input{class_neat_speciation_strategy}
+\input{class_normal_distribution}
+\input{class_parse_turbines}
+\input{class_point}
+\input{class_r_a_n_d_o_m___d_a_g___node}
+\input{classrec__args_1_1_rec_args}
+\input{class_rectangle}
+\input{struct_result_set}
+\input{class_r_n_n}
+\input{class_r_n_n___edge}
+\input{class_r_n_n___genome}
+\input{class_r_n_n___node}
+\input{class_r_n_n___node___interface}
+\input{class_r_n_n___recurrent___edge}
+\input{class_run_statistics}
+\input{class_sentence_series}
+\input{structsort___c_n_n___edges__by__depth}
+\input{structsort___c_n_n___edges__by__innovation}
+\input{structsort___c_n_n___edges__by__output__depth}
+\input{structsort___c_n_n___nodes__by__depth}
+\input{structsort__genomes__by__fitness}
+\input{structsort__genomes__by__predictions}
+\input{structsort__genomes__by__validation__error}
+\input{structsort___r_n_n___edges__by__depth}
+\input{structsort___r_n_n___edges__by__innovation}
+\input{structsort___r_n_n___edges__by__output__depth}
+\input{structsort___r_n_n___nodes__by__depth}
+\input{structsort___r_n_n___nodes__by__innovation}
+\input{structsort___r_n_n___recurrent___edges__by__depth}
+\input{structsort___r_n_n___recurrent___edges__by__innovation}
+\input{structsort___r_n_n___recurrent___edges__by__output__depth}
+\input{class_speciation_strategy}
+\input{class_species}
+\input{class_time_series}
+\input{class_time_series_set}
+\input{class_time_series_sets}
+\input{class_tracker}
+\input{structucvector}
+\input{class_u_g_r_n_n___node}
+\input{structuivector}
+\input{class_word_series}
+%--- End generated contents ---
+
+% Index
+\backmatter
+\newpage
+\phantomsection
+\clearemptydoublepage
+\addcontentsline{toc}{chapter}{\indexname}
+\printindex
+
+\end{document}
diff --git a/docs/latex/struct_coin.tex b/docs/latex/struct_coin.tex
new file mode 100644
index 00000000..2d01dd3e
--- /dev/null
+++ b/docs/latex/struct_coin.tex
@@ -0,0 +1,16 @@
+\hypertarget{struct_coin}{}\doxysection{Coin Struct Reference}
+\label{struct_coin}\index{Coin@{Coin}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_coin_a1d6bc1176bb9fcbd9ca8c781c92ef432}\label{struct_coin_a1d6bc1176bb9fcbd9ca8c781c92ef432}} 
+\mbox{\hyperlink{structuivector}{uivector}} {\bfseries symbols}
+\item 
+\mbox{\Hypertarget{struct_coin_a0427f9a678a9ce031a254f40f06b3669}\label{struct_coin_a0427f9a678a9ce031a254f40f06b3669}} 
+float {\bfseries weight}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+cpp\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_color.tex b/docs/latex/struct_color.tex
new file mode 100644
index 00000000..8cf6c493
--- /dev/null
+++ b/docs/latex/struct_color.tex
@@ -0,0 +1,19 @@
+\hypertarget{struct_color}{}\doxysection{Color Struct Reference}
+\label{struct_color}\index{Color@{Color}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_color_ab940d17000c033788115329369f856cf}\label{struct_color_ab940d17000c033788115329369f856cf}} 
+int16\+\_\+t {\bfseries red}
+\item 
+\mbox{\Hypertarget{struct_color_abe1fc56211c830a34bb58fafdbf04dbb}\label{struct_color_abe1fc56211c830a34bb58fafdbf04dbb}} 
+int16\+\_\+t {\bfseries green}
+\item 
+\mbox{\Hypertarget{struct_color_a25e2945bf418857e52db0a549e7d3f81}\label{struct_color_a25e2945bf418857e52db0a549e7d3f81}} 
+int16\+\_\+t {\bfseries blue}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+common/color\+\_\+table.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_color_profile.tex b/docs/latex/struct_color_profile.tex
new file mode 100644
index 00000000..8afe1069
--- /dev/null
+++ b/docs/latex/struct_color_profile.tex
@@ -0,0 +1,61 @@
+\hypertarget{struct_color_profile}{}\doxysection{Color\+Profile Struct Reference}
+\label{struct_color_profile}\index{ColorProfile@{ColorProfile}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a4060733b0b18c705f404e57fe7074492}\label{struct_color_profile_a4060733b0b18c705f404e57fe7074492}} 
+unsigned char {\bfseries sixteenbit}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a73c5a699599d34017e7101ae355bafce}\label{struct_color_profile_a73c5a699599d34017e7101ae355bafce}} 
+unsigned char {\bfseries sixteenbit\+\_\+done}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a5473d538859f232abe8aaf864ff1548e}\label{struct_color_profile_a5473d538859f232abe8aaf864ff1548e}} 
+unsigned char {\bfseries colored}
+\item 
+\mbox{\Hypertarget{struct_color_profile_ab0c56fe33cb50929702a475288ab8e4c}\label{struct_color_profile_ab0c56fe33cb50929702a475288ab8e4c}} 
+unsigned char {\bfseries colored\+\_\+done}
+\item 
+\mbox{\Hypertarget{struct_color_profile_ac859f5252253e3e41651d4a40b3f8c07}\label{struct_color_profile_ac859f5252253e3e41651d4a40b3f8c07}} 
+unsigned char {\bfseries key}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a6bcd7f7c40c3e8763a3f1185414f4932}\label{struct_color_profile_a6bcd7f7c40c3e8763a3f1185414f4932}} 
+unsigned short {\bfseries key\+\_\+r}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a69145711cec524101e185425b4b34899}\label{struct_color_profile_a69145711cec524101e185425b4b34899}} 
+unsigned short {\bfseries key\+\_\+g}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a5d9b7502f24a622990f2a532d2f64ac8}\label{struct_color_profile_a5d9b7502f24a622990f2a532d2f64ac8}} 
+unsigned short {\bfseries key\+\_\+b}
+\item 
+\mbox{\Hypertarget{struct_color_profile_ac2d692c039ecb5974303d8e8240367af}\label{struct_color_profile_ac2d692c039ecb5974303d8e8240367af}} 
+unsigned char {\bfseries alpha}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a9c8071d69a1a7a7015f3d880ed9faf8b}\label{struct_color_profile_a9c8071d69a1a7a7015f3d880ed9faf8b}} 
+unsigned char {\bfseries alpha\+\_\+done}
+\item 
+\mbox{\Hypertarget{struct_color_profile_ac38cbfa9237ecaf21cb56730c0c15e19}\label{struct_color_profile_ac38cbfa9237ecaf21cb56730c0c15e19}} 
+unsigned {\bfseries numcolors}
+\item 
+\mbox{\Hypertarget{struct_color_profile_ad64583d868f74ccd5bda6f94b7bd0a6d}\label{struct_color_profile_ad64583d868f74ccd5bda6f94b7bd0a6d}} 
+\mbox{\hyperlink{struct_color_tree}{Color\+Tree}} {\bfseries tree}
+\item 
+\mbox{\Hypertarget{struct_color_profile_acf805bc910a23088e71d4cb04dcaf3df}\label{struct_color_profile_acf805bc910a23088e71d4cb04dcaf3df}} 
+unsigned char $\ast$ {\bfseries palette}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a2edd65be07c3c028a58329e570264980}\label{struct_color_profile_a2edd65be07c3c028a58329e570264980}} 
+unsigned {\bfseries maxnumcolors}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a7a0f6fe120d02e4573d2c27be20715cb}\label{struct_color_profile_a7a0f6fe120d02e4573d2c27be20715cb}} 
+unsigned char {\bfseries numcolors\+\_\+done}
+\item 
+\mbox{\Hypertarget{struct_color_profile_a1a1aefe1c04cff8ede43e12b92429519}\label{struct_color_profile_a1a1aefe1c04cff8ede43e12b92429519}} 
+unsigned {\bfseries greybits}
+\item 
+\mbox{\Hypertarget{struct_color_profile_af3825b320146425e402d7ae42bfaa63e}\label{struct_color_profile_af3825b320146425e402d7ae42bfaa63e}} 
+unsigned char {\bfseries greybits\+\_\+done}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+cpp\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_color_tree.tex b/docs/latex/struct_color_tree.tex
new file mode 100644
index 00000000..d997c50e
--- /dev/null
+++ b/docs/latex/struct_color_tree.tex
@@ -0,0 +1,16 @@
+\hypertarget{struct_color_tree}{}\doxysection{Color\+Tree Struct Reference}
+\label{struct_color_tree}\index{ColorTree@{ColorTree}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_color_tree_a46a3b1d9239f5fd467ec97cd067b9a96}\label{struct_color_tree_a46a3b1d9239f5fd467ec97cd067b9a96}} 
+\mbox{\hyperlink{struct_color_tree}{Color\+Tree}} $\ast$ {\bfseries children} \mbox{[}16\mbox{]}
+\item 
+\mbox{\Hypertarget{struct_color_tree_ab3836a4a5981a7cf4ef553d25d9b0361}\label{struct_color_tree_ab3836a4a5981a7cf4ef553d25d9b0361}} 
+int {\bfseries index}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+cpp\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_e_x_a_c_t___r_e_s_u_l_t.tex b/docs/latex/struct_e_x_a_c_t___r_e_s_u_l_t.tex
new file mode 100644
index 00000000..40bb0b37
--- /dev/null
+++ b/docs/latex/struct_e_x_a_c_t___r_e_s_u_l_t.tex
@@ -0,0 +1,13 @@
+\hypertarget{struct_e_x_a_c_t___r_e_s_u_l_t}{}\doxysection{E\+X\+A\+C\+T\+\_\+\+R\+E\+S\+U\+LT Struct Reference}
+\label{struct_e_x_a_c_t___r_e_s_u_l_t}\index{EXACT\_RESULT@{EXACT\_RESULT}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_e_x_a_c_t___r_e_s_u_l_t_ab4d3de460084674e520889dd1b85ab34}\label{struct_e_x_a_c_t___r_e_s_u_l_t_ab4d3de460084674e520889dd1b85ab34}} 
+\textbf{ string} {\bfseries file\+\_\+contents}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+server/exact\+\_\+validation\+\_\+policy.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_hash.tex b/docs/latex/struct_hash.tex
new file mode 100644
index 00000000..fbe2c84b
--- /dev/null
+++ b/docs/latex/struct_hash.tex
@@ -0,0 +1,22 @@
+\hypertarget{struct_hash}{}\doxysection{Hash Struct Reference}
+\label{struct_hash}\index{Hash@{Hash}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_hash_a0977cf12b1d8e6bbc784b5e0877926f5}\label{struct_hash_a0977cf12b1d8e6bbc784b5e0877926f5}} 
+int $\ast$ {\bfseries head}
+\item 
+\mbox{\Hypertarget{struct_hash_a66918968854722efdf7ab5f8ac2c6c1d}\label{struct_hash_a66918968854722efdf7ab5f8ac2c6c1d}} 
+int $\ast$ {\bfseries val}
+\item 
+\mbox{\Hypertarget{struct_hash_abf6ad3db2f652a19cc4ff0792e477899}\label{struct_hash_abf6ad3db2f652a19cc4ff0792e477899}} 
+unsigned short $\ast$ {\bfseries chain}
+\item 
+\mbox{\Hypertarget{struct_hash_a7247caa3e23eaba8f0d199ec5010c931}\label{struct_hash_a7247caa3e23eaba8f0d199ec5010c931}} 
+unsigned short $\ast$ {\bfseries zeros}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+cpp\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_huffman_tree.tex b/docs/latex/struct_huffman_tree.tex
new file mode 100644
index 00000000..bf1b1fc9
--- /dev/null
+++ b/docs/latex/struct_huffman_tree.tex
@@ -0,0 +1,25 @@
+\hypertarget{struct_huffman_tree}{}\doxysection{Huffman\+Tree Struct Reference}
+\label{struct_huffman_tree}\index{HuffmanTree@{HuffmanTree}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_huffman_tree_a91160304cb771d2f9f39ee357c9b05a8}\label{struct_huffman_tree_a91160304cb771d2f9f39ee357c9b05a8}} 
+unsigned $\ast$ {\bfseries tree2d}
+\item 
+\mbox{\Hypertarget{struct_huffman_tree_a47b3346a25fe0a3222b595c236ad146e}\label{struct_huffman_tree_a47b3346a25fe0a3222b595c236ad146e}} 
+unsigned $\ast$ {\bfseries tree1d}
+\item 
+\mbox{\Hypertarget{struct_huffman_tree_aef81d45a5c56276c5699a8e9a575021d}\label{struct_huffman_tree_aef81d45a5c56276c5699a8e9a575021d}} 
+unsigned $\ast$ {\bfseries lengths}
+\item 
+\mbox{\Hypertarget{struct_huffman_tree_adf034ca9ce62a4ebfffaaeaba4378a26}\label{struct_huffman_tree_adf034ca9ce62a4ebfffaaeaba4378a26}} 
+unsigned {\bfseries maxbitlen}
+\item 
+\mbox{\Hypertarget{struct_huffman_tree_a608df5a24f60d1077a5cde19d5149e1f}\label{struct_huffman_tree_a608df5a24f60d1077a5cde19d5149e1f}} 
+unsigned {\bfseries numcodes}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+cpp\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_lode_p_n_g_color_mode.tex b/docs/latex/struct_lode_p_n_g_color_mode.tex
new file mode 100644
index 00000000..bb0eb8c9
--- /dev/null
+++ b/docs/latex/struct_lode_p_n_g_color_mode.tex
@@ -0,0 +1,34 @@
+\hypertarget{struct_lode_p_n_g_color_mode}{}\doxysection{Lode\+P\+N\+G\+Color\+Mode Struct Reference}
+\label{struct_lode_p_n_g_color_mode}\index{LodePNGColorMode@{LodePNGColorMode}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_color_mode_a4f3df7240411abe80546052d197fbe8d}\label{struct_lode_p_n_g_color_mode_a4f3df7240411abe80546052d197fbe8d}} 
+Lode\+P\+N\+G\+Color\+Type {\bfseries colortype}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_color_mode_ad20010b9561980f65281bc17f7848253}\label{struct_lode_p_n_g_color_mode_ad20010b9561980f65281bc17f7848253}} 
+unsigned {\bfseries bitdepth}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_color_mode_a54f0a793238009fcb95f081626fae308}\label{struct_lode_p_n_g_color_mode_a54f0a793238009fcb95f081626fae308}} 
+unsigned char $\ast$ {\bfseries palette}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_color_mode_a407557f056168682d9319aeb60866dcc}\label{struct_lode_p_n_g_color_mode_a407557f056168682d9319aeb60866dcc}} 
+size\+\_\+t {\bfseries palettesize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_color_mode_ab9105505c5d56cfc6ce4efe1bb288b54}\label{struct_lode_p_n_g_color_mode_ab9105505c5d56cfc6ce4efe1bb288b54}} 
+unsigned {\bfseries key\+\_\+defined}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_color_mode_a29e64327bca1f3d16235e9ff471e4d50}\label{struct_lode_p_n_g_color_mode_a29e64327bca1f3d16235e9ff471e4d50}} 
+unsigned {\bfseries key\+\_\+r}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_color_mode_ad98309f36d289392b0c440baa50af9f6}\label{struct_lode_p_n_g_color_mode_ad98309f36d289392b0c440baa50af9f6}} 
+unsigned {\bfseries key\+\_\+g}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_color_mode_a93a269405fee0d1c5045a1a671ed1de8}\label{struct_lode_p_n_g_color_mode_a93a269405fee0d1c5045a1a671ed1de8}} 
+unsigned {\bfseries key\+\_\+b}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+h\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_lode_p_n_g_compress_settings.tex b/docs/latex/struct_lode_p_n_g_compress_settings.tex
new file mode 100644
index 00000000..ce3fd22c
--- /dev/null
+++ b/docs/latex/struct_lode_p_n_g_compress_settings.tex
@@ -0,0 +1,37 @@
+\hypertarget{struct_lode_p_n_g_compress_settings}{}\doxysection{Lode\+P\+N\+G\+Compress\+Settings Struct Reference}
+\label{struct_lode_p_n_g_compress_settings}\index{LodePNGCompressSettings@{LodePNGCompressSettings}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_compress_settings_ac0afeac7276cce01fa9824aa2d5a1ba9}\label{struct_lode_p_n_g_compress_settings_ac0afeac7276cce01fa9824aa2d5a1ba9}} 
+unsigned {\bfseries btype}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_compress_settings_a37a87bd874376f0298efad2870e70e7e}\label{struct_lode_p_n_g_compress_settings_a37a87bd874376f0298efad2870e70e7e}} 
+unsigned {\bfseries use\+\_\+lz77}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_compress_settings_a01e77a9db5c2c4dfe6c79bf04f0bf84e}\label{struct_lode_p_n_g_compress_settings_a01e77a9db5c2c4dfe6c79bf04f0bf84e}} 
+unsigned {\bfseries windowsize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_compress_settings_a11d89e0ff0c57f1c49dd58cb8347e005}\label{struct_lode_p_n_g_compress_settings_a11d89e0ff0c57f1c49dd58cb8347e005}} 
+unsigned {\bfseries minmatch}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_compress_settings_a70bc37e21eeffead6e9c8d67e163a591}\label{struct_lode_p_n_g_compress_settings_a70bc37e21eeffead6e9c8d67e163a591}} 
+unsigned {\bfseries nicematch}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_compress_settings_ad4ffde429dee40a8c314016f5f6fdab5}\label{struct_lode_p_n_g_compress_settings_ad4ffde429dee40a8c314016f5f6fdab5}} 
+unsigned {\bfseries lazymatching}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_compress_settings_a4a7835f394349f15f1302d11bcb0efa0}\label{struct_lode_p_n_g_compress_settings_a4a7835f394349f15f1302d11bcb0efa0}} 
+unsigned($\ast$ {\bfseries custom\+\_\+zlib} )(unsigned char $\ast$$\ast$, size\+\_\+t $\ast$, const unsigned char $\ast$, size\+\_\+t, const \mbox{\hyperlink{struct_lode_p_n_g_compress_settings}{Lode\+P\+N\+G\+Compress\+Settings}} $\ast$)
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_compress_settings_a55dafebbbe017806fb2bbc32bb40a59b}\label{struct_lode_p_n_g_compress_settings_a55dafebbbe017806fb2bbc32bb40a59b}} 
+unsigned($\ast$ {\bfseries custom\+\_\+deflate} )(unsigned char $\ast$$\ast$, size\+\_\+t $\ast$, const unsigned char $\ast$, size\+\_\+t, const \mbox{\hyperlink{struct_lode_p_n_g_compress_settings}{Lode\+P\+N\+G\+Compress\+Settings}} $\ast$)
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_compress_settings_a62826645ef28e2a84dd2b65f547a2883}\label{struct_lode_p_n_g_compress_settings_a62826645ef28e2a84dd2b65f547a2883}} 
+const void $\ast$ {\bfseries custom\+\_\+context}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+h\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_lode_p_n_g_decoder_settings.tex b/docs/latex/struct_lode_p_n_g_decoder_settings.tex
new file mode 100644
index 00000000..23fbf927
--- /dev/null
+++ b/docs/latex/struct_lode_p_n_g_decoder_settings.tex
@@ -0,0 +1,28 @@
+\hypertarget{struct_lode_p_n_g_decoder_settings}{}\doxysection{Lode\+P\+N\+G\+Decoder\+Settings Struct Reference}
+\label{struct_lode_p_n_g_decoder_settings}\index{LodePNGDecoderSettings@{LodePNGDecoderSettings}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decoder_settings_a9ae8fef9880bef97a3e932f8ea942ed8}\label{struct_lode_p_n_g_decoder_settings_a9ae8fef9880bef97a3e932f8ea942ed8}} 
+\mbox{\hyperlink{struct_lode_p_n_g_decompress_settings}{Lode\+P\+N\+G\+Decompress\+Settings}} {\bfseries zlibsettings}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decoder_settings_a6390c403d2a5718242337bbbaf15131d}\label{struct_lode_p_n_g_decoder_settings_a6390c403d2a5718242337bbbaf15131d}} 
+unsigned {\bfseries ignore\+\_\+crc}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decoder_settings_abaaeec14170c4a37832543c0af6c44b9}\label{struct_lode_p_n_g_decoder_settings_abaaeec14170c4a37832543c0af6c44b9}} 
+unsigned {\bfseries fix\+\_\+png}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decoder_settings_af26f2b29cd338ce4476bee9571a0818a}\label{struct_lode_p_n_g_decoder_settings_af26f2b29cd338ce4476bee9571a0818a}} 
+unsigned {\bfseries color\+\_\+convert}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decoder_settings_aa1212905c3f73d9fffef2c04a220d951}\label{struct_lode_p_n_g_decoder_settings_aa1212905c3f73d9fffef2c04a220d951}} 
+unsigned {\bfseries read\+\_\+text\+\_\+chunks}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decoder_settings_a8775e4fc539dc457916720f52b442f27}\label{struct_lode_p_n_g_decoder_settings_a8775e4fc539dc457916720f52b442f27}} 
+unsigned {\bfseries remember\+\_\+unknown\+\_\+chunks}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+h\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_lode_p_n_g_decompress_settings.tex b/docs/latex/struct_lode_p_n_g_decompress_settings.tex
new file mode 100644
index 00000000..1afb854f
--- /dev/null
+++ b/docs/latex/struct_lode_p_n_g_decompress_settings.tex
@@ -0,0 +1,22 @@
+\hypertarget{struct_lode_p_n_g_decompress_settings}{}\doxysection{Lode\+P\+N\+G\+Decompress\+Settings Struct Reference}
+\label{struct_lode_p_n_g_decompress_settings}\index{LodePNGDecompressSettings@{LodePNGDecompressSettings}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decompress_settings_afab4b919650b51b4d2f175a60ed6c580}\label{struct_lode_p_n_g_decompress_settings_afab4b919650b51b4d2f175a60ed6c580}} 
+unsigned {\bfseries ignore\+\_\+adler32}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decompress_settings_a9dd432e46330dbd2ce3ef1929c64337d}\label{struct_lode_p_n_g_decompress_settings_a9dd432e46330dbd2ce3ef1929c64337d}} 
+unsigned($\ast$ {\bfseries custom\+\_\+zlib} )(unsigned char $\ast$$\ast$, size\+\_\+t $\ast$, const unsigned char $\ast$, size\+\_\+t, const \mbox{\hyperlink{struct_lode_p_n_g_decompress_settings}{Lode\+P\+N\+G\+Decompress\+Settings}} $\ast$)
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decompress_settings_a023aa5946c99934d40280850a4d8b204}\label{struct_lode_p_n_g_decompress_settings_a023aa5946c99934d40280850a4d8b204}} 
+unsigned($\ast$ {\bfseries custom\+\_\+inflate} )(unsigned char $\ast$$\ast$, size\+\_\+t $\ast$, const unsigned char $\ast$, size\+\_\+t, const \mbox{\hyperlink{struct_lode_p_n_g_decompress_settings}{Lode\+P\+N\+G\+Decompress\+Settings}} $\ast$)
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_decompress_settings_a66e3608b541c64bb275c0ac1a80c3ec6}\label{struct_lode_p_n_g_decompress_settings_a66e3608b541c64bb275c0ac1a80c3ec6}} 
+const void $\ast$ {\bfseries custom\+\_\+context}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+h\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_lode_p_n_g_encoder_settings.tex b/docs/latex/struct_lode_p_n_g_encoder_settings.tex
new file mode 100644
index 00000000..19426126
--- /dev/null
+++ b/docs/latex/struct_lode_p_n_g_encoder_settings.tex
@@ -0,0 +1,34 @@
+\hypertarget{struct_lode_p_n_g_encoder_settings}{}\doxysection{Lode\+P\+N\+G\+Encoder\+Settings Struct Reference}
+\label{struct_lode_p_n_g_encoder_settings}\index{LodePNGEncoderSettings@{LodePNGEncoderSettings}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_encoder_settings_a2c5928b4172c75e27de467870f2ff946}\label{struct_lode_p_n_g_encoder_settings_a2c5928b4172c75e27de467870f2ff946}} 
+\mbox{\hyperlink{struct_lode_p_n_g_compress_settings}{Lode\+P\+N\+G\+Compress\+Settings}} {\bfseries zlibsettings}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_encoder_settings_a4cad5feafb33c208706886bedb93d3d4}\label{struct_lode_p_n_g_encoder_settings_a4cad5feafb33c208706886bedb93d3d4}} 
+Lode\+P\+N\+G\+Auto\+Convert {\bfseries auto\+\_\+convert}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_encoder_settings_a0d82e8f2fabcb6cebbc54b80922945f1}\label{struct_lode_p_n_g_encoder_settings_a0d82e8f2fabcb6cebbc54b80922945f1}} 
+unsigned {\bfseries filter\+\_\+palette\+\_\+zero}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_encoder_settings_a5e18e4eb941763a2e3e6c65ee9f0729c}\label{struct_lode_p_n_g_encoder_settings_a5e18e4eb941763a2e3e6c65ee9f0729c}} 
+Lode\+P\+N\+G\+Filter\+Strategy {\bfseries filter\+\_\+strategy}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_encoder_settings_a4446f87b5283f25664802a1be037e76e}\label{struct_lode_p_n_g_encoder_settings_a4446f87b5283f25664802a1be037e76e}} 
+const unsigned char $\ast$ {\bfseries predefined\+\_\+filters}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_encoder_settings_a04dc9622ccd1d7c74c56291409aa512a}\label{struct_lode_p_n_g_encoder_settings_a04dc9622ccd1d7c74c56291409aa512a}} 
+unsigned {\bfseries force\+\_\+palette}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_encoder_settings_a893aa542aa7c122c32ee36dd716fbcb2}\label{struct_lode_p_n_g_encoder_settings_a893aa542aa7c122c32ee36dd716fbcb2}} 
+unsigned {\bfseries add\+\_\+id}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_encoder_settings_a6ffdcb8e85a65ea208fe027be072d710}\label{struct_lode_p_n_g_encoder_settings_a6ffdcb8e85a65ea208fe027be072d710}} 
+unsigned {\bfseries text\+\_\+compression}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+h\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_lode_p_n_g_info.tex b/docs/latex/struct_lode_p_n_g_info.tex
new file mode 100644
index 00000000..8a60d2d1
--- /dev/null
+++ b/docs/latex/struct_lode_p_n_g_info.tex
@@ -0,0 +1,82 @@
+\hypertarget{struct_lode_p_n_g_info}{}\doxysection{Lode\+P\+N\+G\+Info Struct Reference}
+\label{struct_lode_p_n_g_info}\index{LodePNGInfo@{LodePNGInfo}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a42bcacd0dbaaea01c04cc87b58ac3c1d}\label{struct_lode_p_n_g_info_a42bcacd0dbaaea01c04cc87b58ac3c1d}} 
+unsigned {\bfseries compression\+\_\+method}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a5098d6e8aa528d5197f51914439633b9}\label{struct_lode_p_n_g_info_a5098d6e8aa528d5197f51914439633b9}} 
+unsigned {\bfseries filter\+\_\+method}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a80207e3e53c959b2285636496a3dd3f1}\label{struct_lode_p_n_g_info_a80207e3e53c959b2285636496a3dd3f1}} 
+unsigned {\bfseries interlace\+\_\+method}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a0af9bab3435084780ce8c1cb69bb2628}\label{struct_lode_p_n_g_info_a0af9bab3435084780ce8c1cb69bb2628}} 
+\mbox{\hyperlink{struct_lode_p_n_g_color_mode}{Lode\+P\+N\+G\+Color\+Mode}} {\bfseries color}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_aa94c65344af02472adb9c71eae2e765f}\label{struct_lode_p_n_g_info_aa94c65344af02472adb9c71eae2e765f}} 
+unsigned {\bfseries background\+\_\+defined}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a98b59c3760bda184bb16c9713b430bc3}\label{struct_lode_p_n_g_info_a98b59c3760bda184bb16c9713b430bc3}} 
+unsigned {\bfseries background\+\_\+r}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_abf638e191edaeaa2b02c371a381e3a89}\label{struct_lode_p_n_g_info_abf638e191edaeaa2b02c371a381e3a89}} 
+unsigned {\bfseries background\+\_\+g}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a994de0c74ef1092f056ff534e00dfa0d}\label{struct_lode_p_n_g_info_a994de0c74ef1092f056ff534e00dfa0d}} 
+unsigned {\bfseries background\+\_\+b}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a393e0b3948ca6674232e1cc625db282e}\label{struct_lode_p_n_g_info_a393e0b3948ca6674232e1cc625db282e}} 
+size\+\_\+t {\bfseries text\+\_\+num}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a0a26147c9673870dd122693f17a69b13}\label{struct_lode_p_n_g_info_a0a26147c9673870dd122693f17a69b13}} 
+char $\ast$$\ast$ {\bfseries text\+\_\+keys}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_aac321d27e65c54e56d6092d3a6400a81}\label{struct_lode_p_n_g_info_aac321d27e65c54e56d6092d3a6400a81}} 
+char $\ast$$\ast$ {\bfseries text\+\_\+strings}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a22166bb10c89a4d80e206d6c4736b625}\label{struct_lode_p_n_g_info_a22166bb10c89a4d80e206d6c4736b625}} 
+size\+\_\+t {\bfseries itext\+\_\+num}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a1b909e03596abf86d564641741b0087f}\label{struct_lode_p_n_g_info_a1b909e03596abf86d564641741b0087f}} 
+char $\ast$$\ast$ {\bfseries itext\+\_\+keys}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_ae9f9f594e63c910d467a14f550960837}\label{struct_lode_p_n_g_info_ae9f9f594e63c910d467a14f550960837}} 
+char $\ast$$\ast$ {\bfseries itext\+\_\+langtags}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a93a8e823ac715dbdd625f023d8fdebc2}\label{struct_lode_p_n_g_info_a93a8e823ac715dbdd625f023d8fdebc2}} 
+char $\ast$$\ast$ {\bfseries itext\+\_\+transkeys}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a7014fd40ffeb1d482f72d33c020cf73e}\label{struct_lode_p_n_g_info_a7014fd40ffeb1d482f72d33c020cf73e}} 
+char $\ast$$\ast$ {\bfseries itext\+\_\+strings}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a9adb9f74ab90716ae107b99da5384424}\label{struct_lode_p_n_g_info_a9adb9f74ab90716ae107b99da5384424}} 
+unsigned {\bfseries time\+\_\+defined}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a4d3407acdf79bf87f20a3562f210b393}\label{struct_lode_p_n_g_info_a4d3407acdf79bf87f20a3562f210b393}} 
+\mbox{\hyperlink{struct_lode_p_n_g_time}{Lode\+P\+N\+G\+Time}} {\bfseries time}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a9b8e29b7e7b4908a2de0275e01a828ed}\label{struct_lode_p_n_g_info_a9b8e29b7e7b4908a2de0275e01a828ed}} 
+unsigned {\bfseries phys\+\_\+defined}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a1593fa6e1acc93f3b9de51c340bef94d}\label{struct_lode_p_n_g_info_a1593fa6e1acc93f3b9de51c340bef94d}} 
+unsigned {\bfseries phys\+\_\+x}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a52ad7a105244d00f1e91c489eaf53f97}\label{struct_lode_p_n_g_info_a52ad7a105244d00f1e91c489eaf53f97}} 
+unsigned {\bfseries phys\+\_\+y}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_ad6f2171d9f87716e5010f6c5352f9855}\label{struct_lode_p_n_g_info_ad6f2171d9f87716e5010f6c5352f9855}} 
+unsigned {\bfseries phys\+\_\+unit}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a8347476da7fc2fc6af4ec7ed44b638c6}\label{struct_lode_p_n_g_info_a8347476da7fc2fc6af4ec7ed44b638c6}} 
+unsigned char $\ast$ {\bfseries unknown\+\_\+chunks\+\_\+data} \mbox{[}3\mbox{]}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_info_a25a81d760759bd0383ae5a81ba83911d}\label{struct_lode_p_n_g_info_a25a81d760759bd0383ae5a81ba83911d}} 
+size\+\_\+t {\bfseries unknown\+\_\+chunks\+\_\+size} \mbox{[}3\mbox{]}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+h\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_lode_p_n_g_state.tex b/docs/latex/struct_lode_p_n_g_state.tex
new file mode 100644
index 00000000..bf7958d2
--- /dev/null
+++ b/docs/latex/struct_lode_p_n_g_state.tex
@@ -0,0 +1,25 @@
+\hypertarget{struct_lode_p_n_g_state}{}\doxysection{Lode\+P\+N\+G\+State Struct Reference}
+\label{struct_lode_p_n_g_state}\index{LodePNGState@{LodePNGState}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_state_abd2c38ffc68f04b0e4159e1f97ba1f76}\label{struct_lode_p_n_g_state_abd2c38ffc68f04b0e4159e1f97ba1f76}} 
+\mbox{\hyperlink{struct_lode_p_n_g_decoder_settings}{Lode\+P\+N\+G\+Decoder\+Settings}} {\bfseries decoder}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_state_ac63d91db835129d02eb83bbe81de347e}\label{struct_lode_p_n_g_state_ac63d91db835129d02eb83bbe81de347e}} 
+\mbox{\hyperlink{struct_lode_p_n_g_encoder_settings}{Lode\+P\+N\+G\+Encoder\+Settings}} {\bfseries encoder}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_state_a597bc08de787147474d43adf8b6ceacf}\label{struct_lode_p_n_g_state_a597bc08de787147474d43adf8b6ceacf}} 
+\mbox{\hyperlink{struct_lode_p_n_g_color_mode}{Lode\+P\+N\+G\+Color\+Mode}} {\bfseries info\+\_\+raw}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_state_a08d9ac43c995fcf34d72b1d37047b6fa}\label{struct_lode_p_n_g_state_a08d9ac43c995fcf34d72b1d37047b6fa}} 
+\mbox{\hyperlink{struct_lode_p_n_g_info}{Lode\+P\+N\+G\+Info}} {\bfseries info\+\_\+png}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_state_a1a00a050da588cf3c2b7a6252bebb0cd}\label{struct_lode_p_n_g_state_a1a00a050da588cf3c2b7a6252bebb0cd}} 
+unsigned {\bfseries error}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+h\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_lode_p_n_g_time.tex b/docs/latex/struct_lode_p_n_g_time.tex
new file mode 100644
index 00000000..88556381
--- /dev/null
+++ b/docs/latex/struct_lode_p_n_g_time.tex
@@ -0,0 +1,28 @@
+\hypertarget{struct_lode_p_n_g_time}{}\doxysection{Lode\+P\+N\+G\+Time Struct Reference}
+\label{struct_lode_p_n_g_time}\index{LodePNGTime@{LodePNGTime}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_time_a32b68342f39f3d38ba91a721b1149b8f}\label{struct_lode_p_n_g_time_a32b68342f39f3d38ba91a721b1149b8f}} 
+unsigned {\bfseries year}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_time_a295d890e862d5cd0c444e9d3a96fa9d5}\label{struct_lode_p_n_g_time_a295d890e862d5cd0c444e9d3a96fa9d5}} 
+unsigned {\bfseries month}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_time_aa3dee3b7b3a1e730fbded7a7b8cf355e}\label{struct_lode_p_n_g_time_aa3dee3b7b3a1e730fbded7a7b8cf355e}} 
+unsigned {\bfseries day}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_time_ac99cb7f3ce16a85f9f505b7f5f6e0aa7}\label{struct_lode_p_n_g_time_ac99cb7f3ce16a85f9f505b7f5f6e0aa7}} 
+unsigned {\bfseries hour}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_time_ac3045de79728f29fc61f534b062e0f13}\label{struct_lode_p_n_g_time_ac3045de79728f29fc61f534b062e0f13}} 
+unsigned {\bfseries minute}
+\item 
+\mbox{\Hypertarget{struct_lode_p_n_g_time_a6c691c5821e828488a8bb8a90751a2f0}\label{struct_lode_p_n_g_time_a6c691c5821e828488a8bb8a90751a2f0}} 
+unsigned {\bfseries second}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+h\end{DoxyCompactItemize}
diff --git a/docs/latex/struct_result_set.tex b/docs/latex/struct_result_set.tex
new file mode 100644
index 00000000..b169d840
--- /dev/null
+++ b/docs/latex/struct_result_set.tex
@@ -0,0 +1,28 @@
+\hypertarget{struct_result_set}{}\doxysection{Result\+Set Struct Reference}
+\label{struct_result_set}\index{ResultSet@{ResultSet}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{struct_result_set_a46076d8e456ebd1432632d14c9212d99}\label{struct_result_set_a46076d8e456ebd1432632d14c9212d99}} 
+int {\bfseries job}
+\item 
+\mbox{\Hypertarget{struct_result_set_a9501814253897a060bd81a8a25f8af3f}\label{struct_result_set_a9501814253897a060bd81a8a25f8af3f}} 
+double {\bfseries training\+\_\+mae}
+\item 
+\mbox{\Hypertarget{struct_result_set_a29f27bcf55714d86c9089e333f15d0b4}\label{struct_result_set_a29f27bcf55714d86c9089e333f15d0b4}} 
+double {\bfseries training\+\_\+mse}
+\item 
+\mbox{\Hypertarget{struct_result_set_a189c30d8b7a41de52364f2ddfca5a08e}\label{struct_result_set_a189c30d8b7a41de52364f2ddfca5a08e}} 
+double {\bfseries test\+\_\+mae}
+\item 
+\mbox{\Hypertarget{struct_result_set_a39fe2f9170de18a62b60171e87c21269}\label{struct_result_set_a39fe2f9170de18a62b60171e87c21269}} 
+double {\bfseries test\+\_\+mse}
+\item 
+\mbox{\Hypertarget{struct_result_set_a1ec173e479cab71996940492757aece3}\label{struct_result_set_a1ec173e479cab71996940492757aece3}} 
+long {\bfseries milliseconds}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/rnn\+\_\+kfold\+\_\+sweep.\+cxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structcs__less__than__avg.tex b/docs/latex/structcs__less__than__avg.tex
new file mode 100644
index 00000000..7d5745c6
--- /dev/null
+++ b/docs/latex/structcs__less__than__avg.tex
@@ -0,0 +1,13 @@
+\hypertarget{structcs__less__than__avg}{}\doxysection{cs\+\_\+less\+\_\+than\+\_\+avg Struct Reference}
+\label{structcs__less__than__avg}\index{cs\_less\_than\_avg@{cs\_less\_than\_avg}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structcs__less__than__avg_a3f5175ffd950c9178a52fb6cb681864e}\label{structcs__less__than__avg_a3f5175ffd950c9178a52fb6cb681864e}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_consolidated_statistics}{Consolidated\+Statistics}} $\ast$s1, const \mbox{\hyperlink{class_consolidated_statistics}{Consolidated\+Statistics}} $\ast$s2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structcs__less__than__max.tex b/docs/latex/structcs__less__than__max.tex
new file mode 100644
index 00000000..8b04be9c
--- /dev/null
+++ b/docs/latex/structcs__less__than__max.tex
@@ -0,0 +1,13 @@
+\hypertarget{structcs__less__than__max}{}\doxysection{cs\+\_\+less\+\_\+than\+\_\+max Struct Reference}
+\label{structcs__less__than__max}\index{cs\_less\_than\_max@{cs\_less\_than\_max}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structcs__less__than__max_adc8849f06b81eecec7ac74bbe334c24a}\label{structcs__less__than__max_adc8849f06b81eecec7ac74bbe334c24a}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_consolidated_statistics}{Consolidated\+Statistics}} $\ast$s1, const \mbox{\hyperlink{class_consolidated_statistics}{Consolidated\+Statistics}} $\ast$s2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structcs__less__than__min.tex b/docs/latex/structcs__less__than__min.tex
new file mode 100644
index 00000000..984dcb0a
--- /dev/null
+++ b/docs/latex/structcs__less__than__min.tex
@@ -0,0 +1,13 @@
+\hypertarget{structcs__less__than__min}{}\doxysection{cs\+\_\+less\+\_\+than\+\_\+min Struct Reference}
+\label{structcs__less__than__min}\index{cs\_less\_than\_min@{cs\_less\_than\_min}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structcs__less__than__min_ab532df35c758abfa79398c3fe71af373}\label{structcs__less__than__min_ab532df35c758abfa79398c3fe71af373}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_consolidated_statistics}{Consolidated\+Statistics}} $\ast$s1, const \mbox{\hyperlink{class_consolidated_statistics}{Consolidated\+Statistics}} $\ast$s2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structless__than__avg.tex b/docs/latex/structless__than__avg.tex
new file mode 100644
index 00000000..e42597a4
--- /dev/null
+++ b/docs/latex/structless__than__avg.tex
@@ -0,0 +1,13 @@
+\hypertarget{structless__than__avg}{}\doxysection{less\+\_\+than\+\_\+avg Struct Reference}
+\label{structless__than__avg}\index{less\_than\_avg@{less\_than\_avg}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structless__than__avg_acc7aee282e5828e0a9dbd421936cef43}\label{structless__than__avg_acc7aee282e5828e0a9dbd421936cef43}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s1, const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structless__than__dfm__avg.tex b/docs/latex/structless__than__dfm__avg.tex
new file mode 100644
index 00000000..37dcd990
--- /dev/null
+++ b/docs/latex/structless__than__dfm__avg.tex
@@ -0,0 +1,13 @@
+\hypertarget{structless__than__dfm__avg}{}\doxysection{less\+\_\+than\+\_\+dfm\+\_\+avg Struct Reference}
+\label{structless__than__dfm__avg}\index{less\_than\_dfm\_avg@{less\_than\_dfm\_avg}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structless__than__dfm__avg_a170ef354337c2bc1cdd9bec4e49fe7d9}\label{structless__than__dfm__avg_a170ef354337c2bc1cdd9bec4e49fe7d9}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s1, const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structless__than__dfm__max.tex b/docs/latex/structless__than__dfm__max.tex
new file mode 100644
index 00000000..16e30fcd
--- /dev/null
+++ b/docs/latex/structless__than__dfm__max.tex
@@ -0,0 +1,13 @@
+\hypertarget{structless__than__dfm__max}{}\doxysection{less\+\_\+than\+\_\+dfm\+\_\+max Struct Reference}
+\label{structless__than__dfm__max}\index{less\_than\_dfm\_max@{less\_than\_dfm\_max}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structless__than__dfm__max_a438d0fcca06b9a3e6b506d214dcf32e5}\label{structless__than__dfm__max_a438d0fcca06b9a3e6b506d214dcf32e5}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s1, const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structless__than__dfm__min.tex b/docs/latex/structless__than__dfm__min.tex
new file mode 100644
index 00000000..dfe11fbc
--- /dev/null
+++ b/docs/latex/structless__than__dfm__min.tex
@@ -0,0 +1,13 @@
+\hypertarget{structless__than__dfm__min}{}\doxysection{less\+\_\+than\+\_\+dfm\+\_\+min Struct Reference}
+\label{structless__than__dfm__min}\index{less\_than\_dfm\_min@{less\_than\_dfm\_min}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structless__than__dfm__min_a38f0bd46d26fd24d5897a7fd9f01ca09}\label{structless__than__dfm__min_a38f0bd46d26fd24d5897a7fd9f01ca09}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s1, const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structless__than__max.tex b/docs/latex/structless__than__max.tex
new file mode 100644
index 00000000..17614613
--- /dev/null
+++ b/docs/latex/structless__than__max.tex
@@ -0,0 +1,13 @@
+\hypertarget{structless__than__max}{}\doxysection{less\+\_\+than\+\_\+max Struct Reference}
+\label{structless__than__max}\index{less\_than\_max@{less\_than\_max}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structless__than__max_ab56ea10ec2c21ec48a748debd1d08ab9}\label{structless__than__max_ab56ea10ec2c21ec48a748debd1d08ab9}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s1, const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structless__than__min.tex b/docs/latex/structless__than__min.tex
new file mode 100644
index 00000000..723f2025
--- /dev/null
+++ b/docs/latex/structless__than__min.tex
@@ -0,0 +1,13 @@
+\hypertarget{structless__than__min}{}\doxysection{less\+\_\+than\+\_\+min Struct Reference}
+\label{structless__than__min}\index{less\_than\_min@{less\_than\_min}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structless__than__min_a738821687cd1c61110b74d48df62b782}\label{structless__than__min_a738821687cd1c61110b74d48df62b782}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s1, const \mbox{\hyperlink{class_run_statistics}{Run\+Statistics}} $\ast$s2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+mpi/run\+\_\+statistics.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___c_n_n___edges__by__depth.tex b/docs/latex/structsort___c_n_n___edges__by__depth.tex
new file mode 100644
index 00000000..e6947de0
--- /dev/null
+++ b/docs/latex/structsort___c_n_n___edges__by__depth.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___c_n_n___edges__by__depth}{}\doxysection{sort\+\_\+\+C\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+depth Struct Reference}
+\label{structsort___c_n_n___edges__by__depth}\index{sort\_CNN\_Edges\_by\_depth@{sort\_CNN\_Edges\_by\_depth}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___c_n_n___edges__by__depth_a3ed9a9b0a4bc6d45056789d989996c14}\label{structsort___c_n_n___edges__by__depth_a3ed9a9b0a4bc6d45056789d989996c14}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$n1, \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cnn/cnn\+\_\+edge.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___c_n_n___edges__by__innovation.tex b/docs/latex/structsort___c_n_n___edges__by__innovation.tex
new file mode 100644
index 00000000..aac41939
--- /dev/null
+++ b/docs/latex/structsort___c_n_n___edges__by__innovation.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___c_n_n___edges__by__innovation}{}\doxysection{sort\+\_\+\+C\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+innovation Struct Reference}
+\label{structsort___c_n_n___edges__by__innovation}\index{sort\_CNN\_Edges\_by\_innovation@{sort\_CNN\_Edges\_by\_innovation}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___c_n_n___edges__by__innovation_ae089c0daf22fcc4ef9446ad6a2e3ecd6}\label{structsort___c_n_n___edges__by__innovation_ae089c0daf22fcc4ef9446ad6a2e3ecd6}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$n1, \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cnn/cnn\+\_\+edge.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___c_n_n___edges__by__output__depth.tex b/docs/latex/structsort___c_n_n___edges__by__output__depth.tex
new file mode 100644
index 00000000..3edd68db
--- /dev/null
+++ b/docs/latex/structsort___c_n_n___edges__by__output__depth.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___c_n_n___edges__by__output__depth}{}\doxysection{sort\+\_\+\+C\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+output\+\_\+depth Struct Reference}
+\label{structsort___c_n_n___edges__by__output__depth}\index{sort\_CNN\_Edges\_by\_output\_depth@{sort\_CNN\_Edges\_by\_output\_depth}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___c_n_n___edges__by__output__depth_aea02edda67b14c423ccdcfc59431cf36}\label{structsort___c_n_n___edges__by__output__depth_aea02edda67b14c423ccdcfc59431cf36}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$n1, \mbox{\hyperlink{class_c_n_n___edge}{C\+N\+N\+\_\+\+Edge}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cnn/cnn\+\_\+edge.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___c_n_n___nodes__by__depth.tex b/docs/latex/structsort___c_n_n___nodes__by__depth.tex
new file mode 100644
index 00000000..d1d04c37
--- /dev/null
+++ b/docs/latex/structsort___c_n_n___nodes__by__depth.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___c_n_n___nodes__by__depth}{}\doxysection{sort\+\_\+\+C\+N\+N\+\_\+\+Nodes\+\_\+by\+\_\+depth Struct Reference}
+\label{structsort___c_n_n___nodes__by__depth}\index{sort\_CNN\_Nodes\_by\_depth@{sort\_CNN\_Nodes\_by\_depth}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___c_n_n___nodes__by__depth_a28052ab84934932f91e338246deadf24}\label{structsort___c_n_n___nodes__by__depth_a28052ab84934932f91e338246deadf24}} 
+bool {\bfseries operator()} (const \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$n1, const \mbox{\hyperlink{class_c_n_n___node}{C\+N\+N\+\_\+\+Node}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cnn/cnn\+\_\+node.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___r_n_n___edges__by__depth.tex b/docs/latex/structsort___r_n_n___edges__by__depth.tex
new file mode 100644
index 00000000..7dbf495d
--- /dev/null
+++ b/docs/latex/structsort___r_n_n___edges__by__depth.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___r_n_n___edges__by__depth}{}\doxysection{sort\+\_\+\+R\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+depth Struct Reference}
+\label{structsort___r_n_n___edges__by__depth}\index{sort\_RNN\_Edges\_by\_depth@{sort\_RNN\_Edges\_by\_depth}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___r_n_n___edges__by__depth_a7a8ededf12bc9883594faa1741fcff4b}\label{structsort___r_n_n___edges__by__depth_a7a8ededf12bc9883594faa1741fcff4b}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+edge.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___r_n_n___edges__by__innovation.tex b/docs/latex/structsort___r_n_n___edges__by__innovation.tex
new file mode 100644
index 00000000..e6f622d6
--- /dev/null
+++ b/docs/latex/structsort___r_n_n___edges__by__innovation.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___r_n_n___edges__by__innovation}{}\doxysection{sort\+\_\+\+R\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+innovation Struct Reference}
+\label{structsort___r_n_n___edges__by__innovation}\index{sort\_RNN\_Edges\_by\_innovation@{sort\_RNN\_Edges\_by\_innovation}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___r_n_n___edges__by__innovation_a6d1cfc2ba6163fce1cad300f1e6b3f86}\label{structsort___r_n_n___edges__by__innovation_a6d1cfc2ba6163fce1cad300f1e6b3f86}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+edge.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___r_n_n___edges__by__output__depth.tex b/docs/latex/structsort___r_n_n___edges__by__output__depth.tex
new file mode 100644
index 00000000..c8ab1aba
--- /dev/null
+++ b/docs/latex/structsort___r_n_n___edges__by__output__depth.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___r_n_n___edges__by__output__depth}{}\doxysection{sort\+\_\+\+R\+N\+N\+\_\+\+Edges\+\_\+by\+\_\+output\+\_\+depth Struct Reference}
+\label{structsort___r_n_n___edges__by__output__depth}\index{sort\_RNN\_Edges\_by\_output\_depth@{sort\_RNN\_Edges\_by\_output\_depth}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___r_n_n___edges__by__output__depth_a9c3ca0231748a742c637cb9facab927b}\label{structsort___r_n_n___edges__by__output__depth_a9c3ca0231748a742c637cb9facab927b}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___edge}{R\+N\+N\+\_\+\+Edge}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+edge.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___r_n_n___nodes__by__depth.tex b/docs/latex/structsort___r_n_n___nodes__by__depth.tex
new file mode 100644
index 00000000..3eadb9e1
--- /dev/null
+++ b/docs/latex/structsort___r_n_n___nodes__by__depth.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___r_n_n___nodes__by__depth}{}\doxysection{sort\+\_\+\+R\+N\+N\+\_\+\+Nodes\+\_\+by\+\_\+depth Struct Reference}
+\label{structsort___r_n_n___nodes__by__depth}\index{sort\_RNN\_Nodes\_by\_depth@{sort\_RNN\_Nodes\_by\_depth}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___r_n_n___nodes__by__depth_a87ccc3e6ade2336119c29c318db9cc12}\label{structsort___r_n_n___nodes__by__depth_a87ccc3e6ade2336119c29c318db9cc12}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+node\+\_\+interface.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___r_n_n___nodes__by__innovation.tex b/docs/latex/structsort___r_n_n___nodes__by__innovation.tex
new file mode 100644
index 00000000..61cc775f
--- /dev/null
+++ b/docs/latex/structsort___r_n_n___nodes__by__innovation.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___r_n_n___nodes__by__innovation}{}\doxysection{sort\+\_\+\+R\+N\+N\+\_\+\+Nodes\+\_\+by\+\_\+innovation Struct Reference}
+\label{structsort___r_n_n___nodes__by__innovation}\index{sort\_RNN\_Nodes\_by\_innovation@{sort\_RNN\_Nodes\_by\_innovation}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___r_n_n___nodes__by__innovation_a51e5c470e4897ea95fba81b8ee8daf4d}\label{structsort___r_n_n___nodes__by__innovation_a51e5c470e4897ea95fba81b8ee8daf4d}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___node___interface}{R\+N\+N\+\_\+\+Node\+\_\+\+Interface}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+node\+\_\+interface.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___r_n_n___recurrent___edges__by__depth.tex b/docs/latex/structsort___r_n_n___recurrent___edges__by__depth.tex
new file mode 100644
index 00000000..815a5f6a
--- /dev/null
+++ b/docs/latex/structsort___r_n_n___recurrent___edges__by__depth.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___r_n_n___recurrent___edges__by__depth}{}\doxysection{sort\+\_\+\+R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edges\+\_\+by\+\_\+depth Struct Reference}
+\label{structsort___r_n_n___recurrent___edges__by__depth}\index{sort\_RNN\_Recurrent\_Edges\_by\_depth@{sort\_RNN\_Recurrent\_Edges\_by\_depth}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___r_n_n___recurrent___edges__by__depth_affcf0342282ce0284858e6cebd14d668}\label{structsort___r_n_n___recurrent___edges__by__depth_affcf0342282ce0284858e6cebd14d668}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+recurrent\+\_\+edge.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___r_n_n___recurrent___edges__by__innovation.tex b/docs/latex/structsort___r_n_n___recurrent___edges__by__innovation.tex
new file mode 100644
index 00000000..fde5e6ee
--- /dev/null
+++ b/docs/latex/structsort___r_n_n___recurrent___edges__by__innovation.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___r_n_n___recurrent___edges__by__innovation}{}\doxysection{sort\+\_\+\+R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edges\+\_\+by\+\_\+innovation Struct Reference}
+\label{structsort___r_n_n___recurrent___edges__by__innovation}\index{sort\_RNN\_Recurrent\_Edges\_by\_innovation@{sort\_RNN\_Recurrent\_Edges\_by\_innovation}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___r_n_n___recurrent___edges__by__innovation_a4e6f3310647974b9f69dc692b175b3c7}\label{structsort___r_n_n___recurrent___edges__by__innovation_a4e6f3310647974b9f69dc692b175b3c7}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+recurrent\+\_\+edge.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort___r_n_n___recurrent___edges__by__output__depth.tex b/docs/latex/structsort___r_n_n___recurrent___edges__by__output__depth.tex
new file mode 100644
index 00000000..dce4846e
--- /dev/null
+++ b/docs/latex/structsort___r_n_n___recurrent___edges__by__output__depth.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort___r_n_n___recurrent___edges__by__output__depth}{}\doxysection{sort\+\_\+\+R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edges\+\_\+by\+\_\+output\+\_\+depth Struct Reference}
+\label{structsort___r_n_n___recurrent___edges__by__output__depth}\index{sort\_RNN\_Recurrent\_Edges\_by\_output\_depth@{sort\_RNN\_Recurrent\_Edges\_by\_output\_depth}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort___r_n_n___recurrent___edges__by__output__depth_aa72fc5151555dbf7ea233e94dc9b05dd}\label{structsort___r_n_n___recurrent___edges__by__output__depth_aa72fc5151555dbf7ea233e94dc9b05dd}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$n1, \mbox{\hyperlink{class_r_n_n___recurrent___edge}{R\+N\+N\+\_\+\+Recurrent\+\_\+\+Edge}} $\ast$n2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+recurrent\+\_\+edge.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort__genomes__by__fitness.tex b/docs/latex/structsort__genomes__by__fitness.tex
new file mode 100644
index 00000000..a0cc4b93
--- /dev/null
+++ b/docs/latex/structsort__genomes__by__fitness.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort__genomes__by__fitness}{}\doxysection{sort\+\_\+genomes\+\_\+by\+\_\+fitness Struct Reference}
+\label{structsort__genomes__by__fitness}\index{sort\_genomes\_by\_fitness@{sort\_genomes\_by\_fitness}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort__genomes__by__fitness_a4938540d4d30d58f87248c4febbaaf18}\label{structsort__genomes__by__fitness_a4938540d4d30d58f87248c4febbaaf18}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$g1, \mbox{\hyperlink{class_r_n_n___genome}{R\+N\+N\+\_\+\+Genome}} $\ast$g2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+rnn/rnn\+\_\+genome.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort__genomes__by__predictions.tex b/docs/latex/structsort__genomes__by__predictions.tex
new file mode 100644
index 00000000..eeb3ca68
--- /dev/null
+++ b/docs/latex/structsort__genomes__by__predictions.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort__genomes__by__predictions}{}\doxysection{sort\+\_\+genomes\+\_\+by\+\_\+predictions Struct Reference}
+\label{structsort__genomes__by__predictions}\index{sort\_genomes\_by\_predictions@{sort\_genomes\_by\_predictions}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort__genomes__by__predictions_abfe8f7bd410d2e866d04cef265e6d171}\label{structsort__genomes__by__predictions_abfe8f7bd410d2e866d04cef265e6d171}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$g1, \mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$g2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cnn/cnn\+\_\+genome.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structsort__genomes__by__validation__error.tex b/docs/latex/structsort__genomes__by__validation__error.tex
new file mode 100644
index 00000000..4ee69e0c
--- /dev/null
+++ b/docs/latex/structsort__genomes__by__validation__error.tex
@@ -0,0 +1,13 @@
+\hypertarget{structsort__genomes__by__validation__error}{}\doxysection{sort\+\_\+genomes\+\_\+by\+\_\+validation\+\_\+error Struct Reference}
+\label{structsort__genomes__by__validation__error}\index{sort\_genomes\_by\_validation\_error@{sort\_genomes\_by\_validation\_error}}
+\doxysubsection*{Public Member Functions}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structsort__genomes__by__validation__error_abf56a0cb077a78a1ec6f8af9c500e0cc}\label{structsort__genomes__by__validation__error_abf56a0cb077a78a1ec6f8af9c500e0cc}} 
+bool {\bfseries operator()} (\mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$g1, \mbox{\hyperlink{class_c_n_n___genome}{C\+N\+N\+\_\+\+Genome}} $\ast$g2)
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+cnn/cnn\+\_\+genome.\+hxx\end{DoxyCompactItemize}
diff --git a/docs/latex/structucvector.tex b/docs/latex/structucvector.tex
new file mode 100644
index 00000000..2bf4f4a5
--- /dev/null
+++ b/docs/latex/structucvector.tex
@@ -0,0 +1,19 @@
+\hypertarget{structucvector}{}\doxysection{ucvector Struct Reference}
+\label{structucvector}\index{ucvector@{ucvector}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structucvector_ace794c5713208c5a20f21762cd87c919}\label{structucvector_ace794c5713208c5a20f21762cd87c919}} 
+unsigned char $\ast$ {\bfseries data}
+\item 
+\mbox{\Hypertarget{structucvector_a27c99c34de0c5b3ca0c242d402c69499}\label{structucvector_a27c99c34de0c5b3ca0c242d402c69499}} 
+size\+\_\+t {\bfseries size}
+\item 
+\mbox{\Hypertarget{structucvector_a235168baac13f0c78bd3e309dc170f90}\label{structucvector_a235168baac13f0c78bd3e309dc170f90}} 
+size\+\_\+t {\bfseries allocsize}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+cpp\end{DoxyCompactItemize}
diff --git a/docs/latex/structuivector.tex b/docs/latex/structuivector.tex
new file mode 100644
index 00000000..7342f883
--- /dev/null
+++ b/docs/latex/structuivector.tex
@@ -0,0 +1,19 @@
+\hypertarget{structuivector}{}\doxysection{uivector Struct Reference}
+\label{structuivector}\index{uivector@{uivector}}
+\doxysubsection*{Public Attributes}
+\begin{DoxyCompactItemize}
+\item 
+\mbox{\Hypertarget{structuivector_a427d761df4bb4f0f19b4a973fc224c78}\label{structuivector_a427d761df4bb4f0f19b4a973fc224c78}} 
+unsigned $\ast$ {\bfseries data}
+\item 
+\mbox{\Hypertarget{structuivector_aa999025945f0c93d0461192475ae2720}\label{structuivector_aa999025945f0c93d0461192475ae2720}} 
+size\+\_\+t {\bfseries size}
+\item 
+\mbox{\Hypertarget{structuivector_aac0395a9ad397ae7a28219561ab49ffa}\label{structuivector_aac0395a9ad397ae7a28219561ab49ffa}} 
+size\+\_\+t {\bfseries allocsize}
+\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file\+:\begin{DoxyCompactItemize}
+\item 
+image\+\_\+tools/lodepng.\+cpp\end{DoxyCompactItemize}
diff --git a/docs/latex/tabu_doxygen.sty b/docs/latex/tabu_doxygen.sty
new file mode 100644
index 00000000..60fd7e8d
--- /dev/null
+++ b/docs/latex/tabu_doxygen.sty
@@ -0,0 +1,2557 @@
+%%
+%% This is file `tabu.sty',
+%% generated with the docstrip utility.
+%%
+%% The original source files were:
+%%
+%% tabu.dtx  (with options: `package')
+%% 
+%% This is a generated file.
+%% Copyright (FC) 2010-2011 - lppl
+%% 
+%% tabu : 2011/02/26 v2.8 - tabu : Flexible LaTeX tabulars
+%% 
+%% **********************************************************************************************
+%% \begin{tabu}               { preamble } => default target: \linewidth or \linegoal
+%% \begin{tabu} to     <dimen>{ preamble } => target specified
+%% \begin{tabu} spread <dimen>{ preamble } => target relative to the ``natural width''
+%% 
+%%  tabu works in text and in math modes.
+%% 
+%%  X columns: automatic width adjustment + horizontal and vertical alignment
+%%  \begin{tabu}   { X[4c] X[1c] X[-2ml]  }
+%% 
+%%  Horizontal lines and / or leaders:
+%%         \hline\hline                          => double horizontal line
+%%         \firsthline\hline                     => for nested tabulars
+%%         \lasthline\hline                      => for nested tabulars
+%%         \tabucline[line spec]{column-column}  => ``funny'' lines (dash/leader)
+%%  Automatic lines / leaders :
+%%         \everyrow{\hline\hline}
+%% 
+%%  Vertical lines and / or leaders:
+%%  \begin{tabu}   { |[3pt red] X[4c] X[1c] X[-2ml] |[3pt blue] }
+%%  \begin{tabu}   { |[3pt red] X[4c] X[1c] X[-2ml] |[3pt on 2pt off 4pt blue] }
+%% 
+%%  Fixed vertical spacing adjustment:
+%%         \extrarowheight=<dimen>     \extrarowdepth=<dimen>
+%%    or:     \extrarowsep=<dimen>               => may be prefixed by \global
+%% 
+%%  Dynamic vertical spacing adjustment:
+%%       \abovetabulinesep=<dimen>  \belowtabulinesep=<dimen>
+%%   or:      \tabulinesep=<dimen>               => may be prefixed by \global
+%% 
+%%  delarray.sty shortcuts: in math and text modes
+%%  \begin{tabu} ....        \({ preamble }\)
+%% 
+%%  Algorithms reports:
+%%            \tracingtabu=1             \tracingtabu=2
+%% 
+%% **********************************************************************************************
+%% 
+%% This work may be distributed and/or modified under the
+%% conditions of the LaTeX Project Public License, either
+%% version 1.3 of this license or (at your option) any later
+%% version. The latest version of this license is in
+%%    http://www.latex-project.org/lppl.txt
+%% 
+%% This work consists of the main source file tabu.dtx
+%% and the derived files
+%%    tabu.sty, tabu.pdf, tabu.ins
+%% 
+%% tabu : Flexible LaTeX tabulars
+%% lppl copyright 2010-2011 by FC <florent.chervet@free.fr>
+%% 
+
+\NeedsTeXFormat{LaTeX2e}[2005/12/01]
+\ProvidesPackage{tabu_doxygen}[2011/02/26 v2.8 - flexible LaTeX tabulars (FC), frozen version for doxygen]
+\RequirePackage{array}[2008/09/09]
+\RequirePackage{varwidth}[2009/03/30]
+\AtEndOfPackage{\tabu@AtEnd \let\tabu@AtEnd \@undefined}
+\let\tabu@AtEnd\@empty
+\def\TMP@EnsureCode#1={%
+    \edef\tabu@AtEnd{\tabu@AtEnd
+                     \catcode#1 \the\catcode#1}%
+    \catcode#1=%
+}% \TMP@EnsureCode
+\TMP@EnsureCode 33 = 12 % !
+\TMP@EnsureCode 58 = 12 % : (for siunitx)
+\TMP@EnsureCode124 = 12 % |
+\TMP@EnsureCode 36 =  3 % $ = math shift
+\TMP@EnsureCode 38 =  4 % & = tab alignment character
+\TMP@EnsureCode 32 = 10 % space
+\TMP@EnsureCode 94 =  7 % ^
+\TMP@EnsureCode 95 =  8 % _
+%% Constants --------------------------------------------------------
+\newcount \c@taburow        \def\thetaburow {\number\c@taburow}
+\newcount \tabu@nbcols
+\newcount \tabu@cnt
+\newcount \tabu@Xcol
+\let\tabu@start \@tempcnta
+\let\tabu@stop  \@tempcntb
+\newcount \tabu@alloc  \tabu@alloc=\m@ne
+\newcount \tabu@nested
+\def\tabu@alloc@{\global\advance\tabu@alloc \@ne \tabu@nested\tabu@alloc}
+\newdimen \tabu@target
+\newdimen \tabu@spreadtarget
+\newdimen \tabu@naturalX
+\newdimen \tabucolX
+\let\tabu@DELTA \@tempdimc
+\let\tabu@thick \@tempdima
+\let\tabu@on    \@tempdimb
+\let\tabu@off   \@tempdimc
+\newdimen \tabu@Xsum
+\newdimen \extrarowdepth
+\newdimen \abovetabulinesep
+\newdimen \belowtabulinesep
+\newdimen \tabustrutrule      \tabustrutrule \z@
+\newtoks \tabu@thebody
+\newtoks \tabu@footnotes
+\newsavebox \tabu@box
+\newsavebox \tabu@arstrutbox
+\newsavebox \tabu@hleads
+\newsavebox \tabu@vleads
+\newif \iftabu@colortbl
+\newif \iftabu@siunitx
+\newif \iftabu@measuring
+\newif \iftabu@spread
+\newif \iftabu@negcoef
+\newif \iftabu@everyrow
+\def\tabu@everyrowtrue {\global\let\iftabu@everyrow \iftrue}
+\def\tabu@everyrowfalse{\global\let\iftabu@everyrow \iffalse}
+\newif \iftabu@long
+\newif \iftabuscantokens
+\def\tabu@rescan {\tabu@verbatim \scantokens  }
+%% Utilities (for internal usage) -----------------------------------
+\def\tabu@gobblespace #1  {#1}
+\def\tabu@gobbletoken #1#2{#1}
+\def\tabu@gobbleX{\futurelet\@let@token \tabu@gobblex}
+\def\tabu@gobblex{\if ^^J\noexpand\@let@token \expandafter\@gobble
+                  \else\ifx \@sptoken\@let@token
+                    \expandafter\tabu@gobblespace\expandafter\tabu@gobbleX
+                  \fi\fi
+}% \tabu@gobblex
+\def\tabu@X{^^J}
+{\obeyspaces
+\global\let\tabu@spxiii= % saves an active space (for \ifx)
+\gdef\tabu@@spxiii{ }}
+\def\tabu@ifenvir {% only for \multicolumn
+    \expandafter\tabu@if@nvir\csname\@currenvir\endcsname
+}% \tabu@ifenvir
+\def\tabu@if@nvir #1{\csname @\ifx\tabu#1first\else
+                              \ifx\longtabu#1first\else
+                              second\fi\fi oftwo\endcsname
+}% \tabu@ifenvir
+\def\tabu@modulo #1#2{\numexpr\ifnum\numexpr#1=\z@ 0\else #1-(#1-(#2-1)/2)/(#2)*(#2)\fi}
+{\catcode`\&=3
+\gdef\tabu@strtrim  #1{% #1 = control sequence to trim
+    \ifodd 1\ifx #1\@empty \else \ifx #1\space \else 0\fi \fi
+            \let\tabu@c@l@r \@empty       \let#1\@empty
+    \else   \expandafter  \tabu@trimspaces  #1&#1\@nnil
+    \fi
+}% \tabu@strtrim
+\gdef\tabu@trimspaces #1&#2\@nnil{\let\tabu@c@l@r=#2\tabu@firstspace .#1& &#2}%
+\gdef\tabu@firstspace #1#2#3 &{\tabu@lastspace #2#3&}
+\gdef\tabu@lastspace #1&#2&#3{\def #3{#1}%
+    \ifx #3\tabu@c@l@r \def\tabu@c@l@r{\protect\color{#1}}\expandafter\remove@to@nnil \fi
+    \tabu@trimspaces #1&#3\@nnil}
+}% \catcode
+\def\tabu@sanitizearg #1#2{{%
+    \csname \ifcsname if@safe@actives\endcsname         % <babel>
+                      @safe@activestrue\else
+                      relax\fi       \endcsname
+    \edef#2{#1}\tabu@strtrim#2\@onelevel@sanitize#2%
+    \expandafter}\expandafter\def\expandafter#2\expandafter{#2}%
+}% \tabu@sanitizearg
+\def\tabu@textbar #1{\begingroup \endlinechar\m@ne \scantokens{\def\:{|}}%
+    \expandafter\endgroup \expandafter#1\:% !!! semi simple group !!!
+}% \tabu@textbar
+\def\tabu@everyrow@bgroup{\iftabu@everyrow \begingroup \else \noalign{\ifnum0=`}\fi \fi}
+\def\tabu@everyrow@egroup{%
+    \iftabu@everyrow \expandafter \endgroup \the\toks@
+    \else            \ifnum0=`{\fi}%
+    \fi
+}% \tabu@everyrow@egroup
+\def\tabu@arstrut {\global\setbox\@arstrutbox \hbox{\vrule
+    height \arraystretch \dimexpr\ht\strutbox+\extrarowheight
+    depth  \arraystretch \dimexpr\dp\strutbox+\extrarowdepth
+    width  \z@}%
+}% \tabu@arstrut
+\def\tabu@rearstrut {%
+    \@tempdima \arraystretch\dimexpr\ht\strutbox+\extrarowheight \relax
+    \@tempdimb \arraystretch\dimexpr\dp\strutbox+\extrarowdepth  \relax
+    \ifodd 1\ifdim \ht\@arstrutbox=\@tempdima
+            \ifdim \dp\@arstrutbox=\@tempdimb 0 \fi\fi
+        \tabu@mkarstrut
+    \fi
+}% \tabu@rearstrut
+\def\tabu@@DBG #1{\ifdim\tabustrutrule>\z@ \color{#1}\fi}
+\def\tabu@DBG@arstrut {\global\setbox\@arstrutbox
+    \hbox to\z@{\hbox to\z@{\hss
+    {\tabu@DBG{cyan}\vrule
+    height \arraystretch \dimexpr\ht\strutbox+\extrarowheight
+    depth  \z@
+    width  \tabustrutrule}\kern-\tabustrutrule
+    {\tabu@DBG{pink}\vrule
+    height \z@
+    depth  \arraystretch \dimexpr\dp\strutbox+\extrarowdepth
+    width \tabustrutrule}}}%
+}% \tabu@DBG@arstrut
+\def\tabu@save@decl{\toks\count@ \expandafter{\the\toks\expandafter\count@
+                                                              \@nextchar}}%
+\def\tabu@savedecl{\ifcat$\d@llarend\else
+       \let\save@decl \tabu@save@decl \fi % no inversion of tokens in text mode
+}% \tabu@savedecl
+\def\tabu@finalstrut #1{\unskip\ifhmode\nobreak\fi\vrule height\z@ depth\z@ width\z@}
+\newcommand*\tabuDisableCommands {\g@addto@macro\tabu@trialh@@k }
+\let\tabu@trialh@@k \@empty
+\def\tabu@nowrite #1#{{\afterassignment}\toks@}
+\let\tabu@write\write
+\let\tabu@immediate\immediate
+\def\tabu@WRITE{\begingroup
+   \def\immediate\write{\aftergroup\endgroup
+                  \tabu@immediate\tabu@write}%
+}% \tabu@WRITE
+\expandafter\def\expandafter\tabu@GenericError\expandafter{%
+                      \expandafter\tabu@WRITE\GenericError}
+\def\tabu@warn{\tabu@WRITE\PackageWarning{tabu}}
+\def\tabu@noxfootnote [#1]{\@gobble}
+\def\tabu@nocolor #1#{\@gobble}
+\newcommand*\tabu@norowcolor[2][]{}
+\def\tabu@maybesiunitx #1{\def\tabu@temp{#1}%
+                          \futurelet\@let@token \tabu@m@ybesiunitx}
+\def\tabu@m@ybesiunitx #1{\def\tabu@m@ybesiunitx {%
+    \ifx #1\@let@token \let\tabu@cellleft \@empty \let\tabu@cellright \@empty \fi
+    \tabu@temp}% \tabu@m@ybesiunitx
+}\expandafter\tabu@m@ybesiunitx \csname siunitx_table_collect_begin:Nn\endcsname
+\def\tabu@celllalign@def #1{\def\tabu@celllalign{\tabu@maybesiunitx{#1}}}%
+%% Fixed vertical spacing adjustment: \extrarowsep ------------------
+\newcommand*\extrarowsep{\edef\tabu@C@extra{\the\numexpr\tabu@C@extra+1}%
+    \iftabu@everyrow    \aftergroup\tabu@Gextra
+    \else               \aftergroup\tabu@n@Gextra
+    \fi
+    \@ifnextchar={\tabu@gobbletoken\tabu@extra} \tabu@extra
+}% \extrarowsep
+\def\tabu@extra {\@ifnextchar_%
+    {\tabu@gobbletoken{\tabu@setextra\extrarowheight \extrarowdepth}}
+    {\ifx ^\@let@token \def\tabu@temp{%
+            \tabu@gobbletoken{\tabu@setextra\extrarowdepth \extrarowheight}}%
+    \else   \let\tabu@temp \@empty
+            \afterassignment \tabu@setextrasep \extrarowdepth
+    \fi \tabu@temp}%
+}% \tabu@extra
+\def\tabu@setextra #1#2{\def\tabu@temp{\tabu@extr@#1#2}\afterassignment\tabu@temp#2}
+\def\tabu@extr@ #1#2{\@ifnextchar^%
+    {\tabu@gobbletoken{\tabu@setextra\extrarowdepth \extrarowheight}}
+    {\ifx _\@let@token \def\tabu@temp{%
+            \tabu@gobbletoken{\tabu@setextra\extrarowheight \extrarowdepth}}%
+    \else   \let\tabu@temp \@empty
+            \tabu@Gsave \tabu@G@extra \tabu@C@extra \extrarowheight \extrarowdepth
+    \fi \tabu@temp}%
+}% \tabu@extr@
+\def\tabu@setextrasep {\extrarowheight=\extrarowdepth
+    \tabu@Gsave \tabu@G@extra \tabu@C@extra \extrarowheight \extrarowdepth
+}% \tabu@setextrasep
+\def\tabu@Gextra{\ifx \tabu@G@extra\@empty \else {\tabu@Rextra}\fi}
+\def\tabu@n@Gextra{\ifx \tabu@G@extra\@empty \else \noalign{\tabu@Rextra}\fi}
+\def\tabu@Rextra{\tabu@Grestore \tabu@G@extra \tabu@C@extra}
+\let\tabu@C@extra \z@
+\let\tabu@G@extra \@empty
+%% Dynamic vertical spacing adjustment: \tabulinesep ----------------
+\newcommand*\tabulinesep{\edef\tabu@C@linesep{\the\numexpr\tabu@C@linesep+1}%
+    \iftabu@everyrow    \aftergroup\tabu@Glinesep
+    \else               \aftergroup\tabu@n@Glinesep
+    \fi
+    \@ifnextchar={\tabu@gobbletoken\tabu@linesep} \tabu@linesep
+}% \tabulinesep
+\def\tabu@linesep {\@ifnextchar_%
+    {\tabu@gobbletoken{\tabu@setsep\abovetabulinesep \belowtabulinesep}}
+    {\ifx ^\@let@token \def\tabu@temp{%
+            \tabu@gobbletoken{\tabu@setsep\belowtabulinesep \abovetabulinesep}}%
+     \else  \let\tabu@temp \@empty
+            \afterassignment \tabu@setlinesep \abovetabulinesep
+     \fi \tabu@temp}%
+}% \tabu@linesep
+\def\tabu@setsep #1#2{\def\tabu@temp{\tabu@sets@p#1#2}\afterassignment\tabu@temp#2}
+\def\tabu@sets@p #1#2{\@ifnextchar^%
+    {\tabu@gobbletoken{\tabu@setsep\belowtabulinesep \abovetabulinesep}}
+    {\ifx _\@let@token \def\tabu@temp{%
+            \tabu@gobbletoken{\tabu@setsep\abovetabulinesep \belowtabulinesep}}%
+    \else   \let\tabu@temp \@empty
+            \tabu@Gsave \tabu@G@linesep \tabu@C@linesep \abovetabulinesep \belowtabulinesep
+    \fi \tabu@temp}%
+}% \tabu@sets@p
+\def\tabu@setlinesep {\belowtabulinesep=\abovetabulinesep
+    \tabu@Gsave \tabu@G@linesep \tabu@C@linesep \abovetabulinesep \belowtabulinesep
+}% \tabu@setlinesep
+\def\tabu@Glinesep{\ifx \tabu@G@linesep\@empty \else {\tabu@Rlinesep}\fi}
+\def\tabu@n@Glinesep{\ifx \tabu@G@linesep\@empty \else \noalign{\tabu@Rlinesep}\fi}
+\def\tabu@Rlinesep{\tabu@Grestore \tabu@G@linesep \tabu@C@linesep}
+\let\tabu@C@linesep \z@
+\let\tabu@G@linesep \@empty
+%% \global\extrarowsep  and  \global\tabulinesep  -------------------
+\def\tabu@Gsave #1#2#3#4{\xdef#1{#1%
+    \toks#2{\toks\the\currentgrouplevel{\global#3\the#3\global#4\the#4}}}%
+}% \tabu@Gsave
+\def\tabu@Grestore#1#2{%
+    \toks#2{}#1\toks\currentgrouplevel\expandafter{\expandafter}\the\toks#2\relax
+    \ifcat$\the\toks\currentgrouplevel$\else
+        \global\let#1\@empty \global\let#2\z@
+        \the\toks\currentgrouplevel
+    \fi
+}% \tabu@Grestore
+%% Setting code for every row ---------------------------------------
+\newcommand*\everyrow{\tabu@everyrow@bgroup
+                      \tabu@start \z@ \tabu@stop \z@ \tabu@evrstartstop
+}% \everyrow
+\def\tabu@evrstartstop {\@ifnextchar^%
+    {\afterassignment \tabu@evrstartstop \tabu@stop=}%
+    {\ifx ^\@let@token
+            \afterassignment\tabu@evrstartstop \tabu@start=%
+     \else  \afterassignment\tabu@everyr@w     \toks@
+     \fi}%
+}% \tabu@evrstartstop
+\def\tabu@everyr@w {%
+    \xdef\tabu@everyrow{%
+        \noexpand\tabu@everyrowfalse
+        \let\noalign \relax
+        \noexpand\tabu@rowfontreset
+        \iftabu@colortbl \noexpand\tabu@rc@ \fi % \taburowcolors
+        \let\noexpand\tabu@docline \noexpand\tabu@docline@evr
+        \the\toks@
+        \noexpand\tabu@evrh@@k
+        \noexpand\tabu@rearstrut
+        \global\advance\c@taburow \@ne}%
+    \iftabu@everyrow \toks@\expandafter
+        {\expandafter\def\expandafter\tabu@evr@L\expandafter{\the\toks@}\ignorespaces}%
+    \else \xdef\tabu@evr@G{\the\toks@}%
+    \fi
+    \tabu@everyrow@egroup
+}% \tabu@everyr@w
+\def\tabu@evr {\def\tabu@evrh@@k}         % for internal use only
+\tabu@evr{}
+%% line style and leaders -------------------------------------------
+\newcommand*\newtabulinestyle [1]{%
+    {\@for \@tempa :=#1\do{\expandafter\tabu@newlinestyle \@tempa==\@nil}}%
+}% \newtabulinestyle
+\def\tabu@newlinestyle #1=#2=#3\@nil{\tabu@getline {#2}%
+    \tabu@sanitizearg {#1}\@tempa
+    \ifodd 1\ifx \@tempa\@empty \ifdefined\tabu@linestyle@ 0 \fi\fi
+    \global\expandafter\let
+        \csname tabu@linestyle@\@tempa \endcsname =\tabu@thestyle \fi
+}% \tabu@newlinestyle
+\newcommand*\tabulinestyle [1]{\tabu@everyrow@bgroup \tabu@getline{#1}%
+    \iftabu@everyrow
+        \toks@\expandafter{\expandafter \def \expandafter
+                    \tabu@ls@L\expandafter{\tabu@thestyle}\ignorespaces}%
+        \gdef\tabu@ls@{\tabu@ls@L}%
+    \else
+        \global\let\tabu@ls@G \tabu@thestyle
+        \gdef\tabu@ls@{\tabu@ls@G}%
+    \fi
+    \tabu@everyrow@egroup
+}% \tabulinestyle
+\newcommand*\taburulecolor{\tabu@everyrow@bgroup \tabu@textbar \tabu@rulecolor}
+\def\tabu@rulecolor #1{\toks@{}%
+    \def\tabu@temp #1##1#1{\tabu@ruledrsc{##1}}\@ifnextchar #1%
+                                                    \tabu@temp
+                                                 \tabu@rulearc
+}% \tabu@rulecolor
+\def\tabu@ruledrsc #1{\edef\tabu@temp{#1}\tabu@strtrim\tabu@temp
+    \ifx \tabu@temp\@empty \def\tabu@temp{\tabu@rule@drsc@ {}{}}%
+    \else \edef\tabu@temp{\noexpand\tabu@rule@drsc@ {}{\tabu@temp}}%
+    \fi
+    \tabu@temp
+}% \tabu@ruledrsc@
+\def\tabu@ruledrsc@   #1#{\tabu@rule@drsc@ {#1}}
+\def\tabu@rule@drsc@ #1#2{%
+    \iftabu@everyrow
+        \ifx \\#1#2\\\toks@{\let\CT@drsc@ \relax}%
+        \else        \toks@{\def\CT@drsc@{\color #1{#2}}}%
+        \fi
+    \else
+        \ifx \\#1#2\\\global\let\CT@drsc@ \relax
+        \else        \gdef\CT@drsc@{\color #1{#2}}%
+        \fi
+    \fi
+    \tabu@rulearc
+}% \tabu@rule@drsc@
+\def\tabu@rulearc    #1#{\tabu@rule@arc@ {#1}}
+\def\tabu@rule@arc@ #1#2{%
+    \iftabu@everyrow
+        \ifx \\#1#2\\\toks@\expandafter{\the\toks@ \def\CT@arc@{}}%
+        \else        \toks@\expandafter{\the\toks@ \def\CT@arc@{\color #1{#2}}}%
+        \fi
+        \toks@\expandafter{\the\toks@
+            \let\tabu@arc@L  \CT@arc@
+            \let\tabu@drsc@L \CT@drsc@
+            \ignorespaces}%
+    \else
+        \ifx \\#1#2\\\gdef\CT@arc@{}%
+        \else        \gdef\CT@arc@{\color #1{#2}}%
+        \fi
+        \global\let\tabu@arc@G  \CT@arc@
+        \global\let\tabu@drsc@G \CT@drsc@
+    \fi
+    \tabu@everyrow@egroup
+}% \tabu@rule@arc@
+\def\taburowcolors {\tabu@everyrow@bgroup \@testopt \tabu@rowcolors 1}
+\def\tabu@rowcolors [#1]#2#{\tabu@rowc@lors{#1}{#2}}
+\def\tabu@rowc@lors #1#2#3{%
+    \toks@{}\@defaultunits \count@      =\number0#2\relax \@nnil
+            \@defaultunits \tabu@start  =\number0#1\relax \@nnil
+    \ifnum \count@<\tw@ \count@=\tw@ \fi
+    \advance\tabu@start \m@ne
+    \ifnum \tabu@start<\z@ \tabu@start \z@ \fi
+    \tabu@rowcolorseries #3\in@..\in@ \@nnil
+}% \tabu@rowcolors
+\def\tabu@rowcolorseries #1..#2\in@ #3\@nnil {%
+    \ifx \in@#1\relax
+        \iftabu@everyrow \toks@{\def\tabu@rc@{}\let\tabu@rc@L \tabu@rc@}%
+        \else   \gdef\tabu@rc@{}\global\let\tabu@rc@G \tabu@rc@
+        \fi
+    \else
+        \ifx \\#2\\\tabu@rowcolorserieserror \fi
+        \tabu@sanitizearg{#1}\tabu@temp
+        \tabu@sanitizearg{#2}\@tempa
+        \advance\count@ \m@ne
+    \iftabu@everyrow
+        \def\tabu@rc@ ##1##2##3##4{\def\tabu@rc@{%
+            \ifnum ##2=\c@taburow
+                \definecolorseries{tabu@rcseries@\the\tabu@nested}{rgb}{last}{##3}{##4}\fi
+            \ifnum \c@taburow<##2 \else
+                \ifnum \tabu@modulo {\c@taburow-##2}{##1+1}=\z@
+                    \resetcolorseries[{##1}]{tabu@rcseries@\the\tabu@nested}\fi
+                \xglobal\colorlet{tabu@rc@\the\tabu@nested}{tabu@rcseries@\the\tabu@nested!!+}%
+                \rowcolor{tabu@rc@\the\tabu@nested}\fi}%
+        }\edef\x{\noexpand\tabu@rc@           {\the\count@}
+                                          {\the\tabu@start}
+                                               {\tabu@temp}
+                                                  {\@tempa}%
+                }\x
+        \toks@\expandafter{\expandafter\def\expandafter\tabu@rc@\expandafter{\tabu@rc@}}%
+        \toks@\expandafter{\the\toks@ \let\tabu@rc@L \tabu@rc@ \ignorespaces}%
+    \else   % inside \noalign
+        \definecolorseries{tabu@rcseries@\the\tabu@nested}{rgb}{last}{\tabu@temp}{\@tempa}%
+        \expandafter\resetcolorseries\expandafter[\the\count@]{tabu@rcseries@\the\tabu@nested}%
+        \xglobal\colorlet{tabu@rc@\the\tabu@nested}{tabu@rcseries@\the\tabu@nested!!+}%
+        \let\noalign \relax \rowcolor{tabu@rc@\the\tabu@nested}%
+        \def\tabu@rc@ ##1##2{\gdef\tabu@rc@{%
+            \ifnum \tabu@modulo {\c@taburow-##2}{##1+1}=\@ne
+                \resetcolorseries[{##1}]{tabu@rcseries@\the\tabu@nested}\fi
+            \xglobal\colorlet{tabu@rc@\the\tabu@nested}{tabu@rcseries@\the\tabu@nested!!+}%
+            \rowcolor{tabu@rc@\the\tabu@nested}}%
+        }\edef\x{\noexpand\tabu@rc@{\the\count@}{\the\c@taburow}}\x
+        \global\let\tabu@rc@G \tabu@rc@
+    \fi
+    \fi
+    \tabu@everyrow@egroup
+}% \tabu@rowcolorseries
+\tabuDisableCommands {\let\tabu@rc@ \@empty }
+\def\tabu@rowcolorserieserror {\PackageError{tabu}
+    {Invalid syntax for \string\taburowcolors
+    \MessageBreak Please look at the documentation!}\@ehd
+}% \tabu@rowcolorserieserror
+\newcommand*\tabureset {%
+    \tabulinesep=\z@ \extrarowsep=\z@ \extratabsurround=\z@
+    \tabulinestyle{}\everyrow{}\taburulecolor||{}\taburowcolors{}%
+}% \tabureset
+%% Parsing the line styles ------------------------------------------
+\def\tabu@getline #1{\begingroup
+    \csname \ifcsname if@safe@actives\endcsname         % <babel>
+                      @safe@activestrue\else
+                      relax\fi       \endcsname
+    \edef\tabu@temp{#1}\tabu@sanitizearg{#1}\@tempa
+    \let\tabu@thestyle \relax
+    \ifcsname tabu@linestyle@\@tempa \endcsname
+            \edef\tabu@thestyle{\endgroup
+                \def\tabu@thestyle{\expandafter\noexpand
+                    \csname tabu@linestyle@\@tempa\endcsname}%
+            }\tabu@thestyle
+    \else   \expandafter\tabu@definestyle \tabu@temp \@nil
+    \fi
+}% \tabu@getline
+\def\tabu@definestyle #1#2\@nil {\endlinechar \m@ne \makeatletter
+    \tabu@thick \maxdimen  \tabu@on \maxdimen   \tabu@off \maxdimen
+    \let\tabu@c@lon \@undefined  \let\tabu@c@loff \@undefined
+    \ifodd 1\ifcat .#1\else\ifcat\relax #1\else 0\fi\fi % catcode 12 or non expandable cs
+            \def\tabu@temp{\tabu@getparam{thick}}%
+    \else   \def\tabu@temp{\tabu@getparam{thick}\maxdimen}%
+    \fi
+    {%
+        \let\tabu@ \relax
+        \def\:{\obeyspaces \tabu@oXIII \tabu@commaXIII \edef\:}% (space active \: happy ;-))
+        \scantokens{\:{\tabu@temp #1#2 \tabu@\tabu@}}%
+                        \expandafter}\expandafter
+                                \def\expandafter\:\expandafter{\:}% line spec rewritten now ;-)
+    \def\;{\def\:}%
+    \scantokens\expandafter{\expandafter\;\expandafter{\:}}% space is now inactive (catcode 10)
+    \let\tabu@ \tabu@getcolor    \:%    all arguments are ready now ;-)
+    \ifdefined\tabu@c@lon \else \let\tabu@c@lon\@empty \fi
+    \ifx \tabu@c@lon\@empty \def\tabu@c@lon{\CT@arc@}\fi
+    \ifdefined\tabu@c@loff \else \let\tabu@c@loff \@empty        \fi
+    \ifdim \tabu@on=\maxdimen \ifdim \tabu@off<\maxdimen
+                                  \tabu@on \tabulineon        \fi\fi
+    \ifdim \tabu@off=\maxdimen \ifdim \tabu@on<\maxdimen
+                                  \tabu@off \tabulineoff      \fi\fi
+    \ifodd 1\ifdim \tabu@off=\maxdimen \ifdim \tabu@on=\maxdimen 0 \fi\fi
+            \in@true    % <leaders>
+    \else   \in@false   % <rule>
+    \fi
+    \ifdim\tabu@thick=\maxdimen \def\tabu@thick{\arrayrulewidth}%
+    \else                       \edef\tabu@thick{\the\tabu@thick}%
+    \fi
+    \edef \tabu@thestyle ##1##2{\endgroup
+        \def\tabu@thestyle{%
+            \ifin@  \noexpand\tabu@leadersstyle {\tabu@thick}
+                                                {\the\tabu@on}{##1}
+                                                {\the\tabu@off}{##2}%
+            \else   \noexpand\tabu@rulesstyle
+                            {##1\vrule width \tabu@thick}%
+                            {##1\leaders \hrule height \tabu@thick \hfil}%
+            \fi}%
+    }\expandafter \expandafter
+        \expandafter \tabu@thestyle \expandafter
+            \expandafter \expandafter
+                {\expandafter\tabu@c@lon\expandafter}\expandafter{\tabu@c@loff}%
+}% \tabu@definestyle
+{\catcode`\O=\active \lccode`\O=`\o \catcode`\,=\active
+    \lowercase{\gdef\tabu@oXIII {\catcode`\o=\active \let O=\tabu@oxiii}}
+    \gdef\tabu@commaXIII {\catcode`\,=\active \let ,=\space}
+}% \catcode
+\def\tabu@oxiii #1{%
+    \ifcase  \ifx n#1\z@ \else
+             \ifx f#1\@ne\else
+             \tw@       \fi\fi
+          \expandafter\tabu@onxiii
+    \or   \expandafter\tabu@ofxiii
+    \else o%
+    \fi#1}%
+\def\tabu@onxiii #1#2{%
+    \ifcase  \ifx  !#2\tw@          \else
+             \ifcat.\noexpand#2\z@  \else
+             \ifx \tabu@spxiii#2\@ne\else
+             \tw@               \fi\fi\fi
+          \tabu@getparam{on}#2\expandafter\@gobble
+    \or   \expandafter\tabu@onxiii    % (space is active)
+    \else o\expandafter\@firstofone
+    \fi{#1#2}}%
+\def\tabu@ofxiii #1#2{%
+    \ifx #2f\expandafter\tabu@offxiii
+    \else   o\expandafter\@firstofone
+    \fi{#1#2}}
+\def\tabu@offxiii #1#2{%
+    \ifcase \ifx  !#2\tw@           \else
+            \ifcat.\noexpand#2\z@   \else
+            \ifx\tabu@spxiii#2\@ne  \else
+            \tw@                \fi\fi\fi
+          \tabu@getparam{off}#2\expandafter\@gobble
+    \or   \expandafter\tabu@offxiii   % (space is active)
+    \else o\expandafter\@firstofone
+    \fi{#1#2}}
+\def\tabu@getparam #1{\tabu@ \csname tabu@#1\endcsname=}
+\def\tabu@getcolor #1{% \tabu@ <- \tabu@getcolor after \edef
+    \ifx \tabu@#1\else   % no more spec
+        \let\tabu@theparam=#1\afterassignment \tabu@getc@l@r #1\fi
+}% \tabu@getcolor
+\def\tabu@getc@l@r #1\tabu@ {%
+    \def\tabu@temp{#1}\tabu@strtrim \tabu@temp
+    \ifx \tabu@temp\@empty
+    \else%\ifcsname \string\color@\tabu@temp \endcsname  % if the color exists
+        \ifx \tabu@theparam \tabu@off   \let\tabu@c@loff \tabu@c@l@r
+        \else                           \let\tabu@c@lon  \tabu@c@l@r
+        \fi
+    %\else \tabu@warncolour{\tabu@temp}%
+    \fi%\fi
+    \tabu@ % next spec
+}% \tabu@getc@l@r
+\def\tabu@warncolour #1{\PackageWarning{tabu}
+    {Color #1 is not defined. Default color used}%
+}% \tabu@warncolour
+\def\tabu@leadersstyle #1#2#3#4#5{\def\tabu@leaders{{#1}{#2}{#3}{#4}{#5}}%
+    \ifx \tabu@leaders\tabu@leaders@G \else
+                \tabu@LEADERS{#1}{#2}{#3}{#4}{#5}\fi
+}% \tabu@leadersstyle
+\def\tabu@rulesstyle #1#2{\let\tabu@leaders \@undefined
+        \gdef\tabu@thevrule{#1}\gdef\tabu@thehrule{#2}%
+}% \tabu@rulesstyle
+%% The leaders boxes ------------------------------------------------
+\def\tabu@LEADERS #1#2#3#4#5{%% width, dash, dash color, gap, gap color
+    {\let\color \tabu@color % => during trials ->  \color = \tabu@nocolor
+    {%                      %    but the leaders boxes should have colors !
+    \def\@therule{\vrule}\def\@thick{height}\def\@length{width}%
+    \def\@box{\hbox}\def\@unbox{\unhbox}\def\@elt{\wd}%
+    \def\@skip{\hskip}\def\@ss{\hss}\def\tabu@leads{\tabu@hleads}%
+    \tabu@l@@d@rs {#1}{#2}{#3}{#4}{#5}%
+    \global\let\tabu@thehleaders \tabu@theleaders
+    }%
+    {%
+    \def\@therule{\hrule}\def\@thick{width}\def\@length{height}%
+    \def\@box{\vbox}\def\@unbox{\unvbox}\def\@elt{\ht}%
+    \def\@skip{\vskip}\def\@ss{\vss}\def\tabu@leads{\tabu@vleads}%
+    \tabu@l@@d@rs {#1}{#2}{#3}{#4}{#5}%
+    \global\let\tabu@thevleaders \tabu@theleaders
+    }%
+    \gdef\tabu@leaders@G{{#1}{#2}{#3}{#4}{#5}}%
+    }%
+}% \tabu@LEADERS
+\def\tabu@therule #1#2{\@therule \@thick#1\@length\dimexpr#2/2 \@depth\z@}
+\def\tabu@l@@d@rs #1#2#3#4#5{%% width, dash, dash color, gap, gap color
+    \global\setbox \tabu@leads=\@box{%
+        {#3\tabu@therule{#1}{#2}}%
+        \ifx\\#5\\\@skip#4\else{#5\tabu@therule{#1}{#4*2}}\fi
+        {#3\tabu@therule{#1}{#2}}}%
+    \global\setbox\tabu@leads=\@box to\@elt\tabu@leads{\@ss
+        {#3\tabu@therule{#1}{#2}}\@unbox\tabu@leads}%
+    \edef\tabu@theleaders ##1{\def\noexpand\tabu@theleaders {%
+        {##1\tabu@therule{#1}{#2}}%
+        \xleaders \copy\tabu@leads \@ss
+        \tabu@therule{0pt}{-#2}{##1\tabu@therule{#1}{#2}}}%
+    }\tabu@theleaders{#3}%
+}% \tabu@l@@d@rs
+%% \tabu \endtabu \tabu* \longtabu \endlongtabu \longtabu* ----------
+\newcommand*\tabu {\tabu@longfalse
+    \ifmmode \def\tabu@ {\array}\def\endtabu {\endarray}%
+    \else  \def\tabu@ {\tabu@tabular}\def\endtabu {\endtabular}\fi
+    \expandafter\let\csname tabu*\endcsname \tabu
+    \expandafter\def\csname endtabu*\endcsname{\endtabu}%
+    \tabu@spreadfalse \tabu@negcoeffalse \tabu@settarget
+}% {tabu}
+\let\tabu@tabular \tabular % <For LyX: some users redefine \tabular...>
+\expandafter\def\csname tabu*\endcsname{\tabuscantokenstrue \tabu}
+\newcommand*\longtabu {\tabu@longtrue
+   \ifmmode\PackageError{tabu}{longtabu not allowed in math mode}\fi
+   \def\tabu@{\longtable}\def\endlongtabu{\endlongtable}%
+   \LTchunksize=\@M
+   \expandafter\let\csname tabu*\endcsname \tabu
+   \expandafter\def\csname endlongtabu*\endcsname{\endlongtabu}%
+   \let\LT@startpbox \tabu@LT@startpbox % \everypar{ array struts }
+   \tabu@spreadfalse \tabu@negcoeffalse \tabu@settarget
+}% {longtabu}
+\expandafter\def\csname longtabu*\endcsname{\tabuscantokenstrue \longtabu}
+\def\tabu@nolongtabu{\PackageError{tabu}
+   {longtabu requires the longtable package}\@ehd}
+%% Read the target and  then : \tabular or \@array ------------------
+\def\tabu@settarget {\futurelet\@let@token \tabu@sett@rget }
+\def\tabu@sett@rget {\tabu@target \z@
+   \ifcase \ifx \bgroup\@let@token   \z@  \else
+           \ifx \@sptoken\@let@token \@ne \else
+           \if t\@let@token          \tw@ \else
+           \if s\@let@token          \thr@@\else
+           \z@\fi\fi\fi\fi
+         \expandafter\tabu@begin
+   \or   \expandafter\tabu@gobblespace\expandafter\tabu@settarget
+   \or   \expandafter\tabu@to
+   \or   \expandafter\tabu@spread
+   \fi
+}% \tabu@sett@rget
+\def\tabu@to to{\def\tabu@halignto{to}\tabu@gettarget}
+\def\tabu@spread spread{\tabu@spreadtrue\def\tabu@halignto{spread}\tabu@gettarget}
+\def\tabu@gettarget {\afterassignment\tabu@linegoaltarget \tabu@target }
+\def\tabu@linegoaltarget {\futurelet\tabu@temp \tabu@linegoalt@rget }
+\def\tabu@linegoalt@rget {%
+   \ifx \tabu@temp\LNGL@setlinegoal
+        \LNGL@setlinegoal \expandafter \@firstoftwo \fi % @gobbles \LNGL@setlinegoal
+   \tabu@begin
+}% \tabu@linegoalt@rget
+\def\tabu@begin #1#{%
+    \iftabu@measuring \expandafter\tabu@nestedmeasure \fi
+    \ifdim \tabu@target=\z@ \let\tabu@halignto \@empty
+    \else                   \edef\tabu@halignto{\tabu@halignto\the\tabu@target}%
+    \fi
+    \@testopt \tabu@tabu@ \tabu@aligndefault #1\@nil
+}% \tabu@begin
+\long\def\tabu@tabu@ [#1]#2\@nil #3{\tabu@setup
+   \def\tabu@align {#1}\def\tabu@savedpream{\NC@find #3}%
+   \tabu@ [\tabu@align ]#2{#3\tabu@rewritefirst }%
+}% \tabu@tabu@
+\def\tabu@nestedmeasure {%
+    \ifodd 1\iftabu@spread \else \ifdim\tabu@target=\z@ \else 0 \fi\fi\relax
+            \tabu@spreadtrue
+    \else   \begingroup \iffalse{\fi \ifnum0=`}\fi
+            \toks@{}\def\tabu@stack{b}%
+            \expandafter\tabu@collectbody\expandafter\tabu@quickrule
+                                         \expandafter\endgroup
+    \fi
+}% \tabu@nestedmeasure
+\def\tabu@quickrule {\indent\vrule height\z@ depth\z@ width\tabu@target}
+%% \tabu@setup  \tabu@init  \tabu@indent
+\def\tabu@setup{\tabu@alloc@
+    \ifcase \tabu@nested
+        \ifmmode \else \iftabu@spread\else \ifdim\tabu@target=\z@
+            \let\tabu@afterendpar \par
+        \fi\fi\fi
+        \def\tabu@aligndefault{c}\tabu@init \tabu@indent
+    \else       % <nested tabu>
+        \def\tabu@aligndefault{t}\let\tabudefaulttarget \linewidth
+    \fi
+    \let\tabu@thetarget \tabudefaulttarget \let\tabu@restored \@undefined
+    \edef\tabu@NC@list{\the\NC@list}\NC@list{\NC@do \tabu@rewritefirst}%
+    \everycr{}\let\@startpbox \tabu@startpbox % for nested tabu inside longtabu...
+              \let\@endpbox   \tabu@endpbox   % idem "    "    "    "    "    "
+              \let\@tabarray  \tabu@tabarray  % idem "    "    "    "    "    "
+    \tabu@setcleanup \tabu@setreset
+}% \tabu@setup
+\def\tabu@init{\tabu@starttimer \tabu@measuringfalse
+    \edef\tabu@hfuzz  {\the\dimexpr\hfuzz+1sp}\global\tabu@footnotes{}%
+    \let\firsthline    \tabu@firsthline   \let\lasthline      \tabu@lasthline
+    \let\firstline     \tabu@firstline    \let\lastline       \tabu@lastline
+    \let\hline         \tabu@hline        \let\@xhline        \tabu@xhline
+    \let\color         \tabu@color        \let\@arstrutbox    \tabu@arstrutbox
+    \iftabu@colortbl\else\let\LT@@hline   \tabu@LT@@hline \fi
+    \tabu@trivlist     %<restore \\=\@normalcr inside lists>
+    \let\@footnotetext \tabu@footnotetext \let\@xfootnotetext \tabu@xfootnotetext
+    \let\@xfootnote    \tabu@xfootnote    \let\centering      \tabu@centering
+    \let\raggedright   \tabu@raggedright  \let\raggedleft     \tabu@raggedleft
+    \let\tabudecimal   \tabu@tabudecimal  \let\Centering      \tabu@Centering
+    \let\RaggedRight   \tabu@RaggedRight  \let\RaggedLeft     \tabu@RaggedLeft
+    \let\justifying    \tabu@justifying   \let\rowfont        \tabu@rowfont
+    \let\fbox          \tabu@fbox         \let\color@b@x      \tabu@color@b@x
+    \let\tabu@@everycr \everycr           \let\tabu@@everypar \everypar
+    \let\tabu@prepnext@tokORI \prepnext@tok\let\prepnext@tok  \tabu@prepnext@tok
+    \let\tabu@multicolumnORI\multicolumn  \let\multicolumn    \tabu@multicolumn
+    \let\tabu@startpbox \@startpbox      % for nested tabu inside longtabu pfff !!!
+    \let\tabu@endpbox   \@endpbox        % idem  "    "    "    "    "    "    "
+    \let\tabu@tabarray  \@tabarray       % idem  "    "    "    "    "    "    "
+    \tabu@adl@fix      \let\endarray      \tabu@endarray % <fix> colortbl & arydshln (delarray)
+    \iftabu@colortbl\CT@everycr\expandafter{\expandafter\iftabu@everyrow \the\CT@everycr \fi}\fi
+}% \tabu@init
+\def\tabu@indent{% correction for indentation
+    \ifdim \parindent>\z@\ifx \linewidth\tabudefaulttarget
+    \everypar\expandafter{%
+        \the\everypar\everypar\expandafter{\the\everypar}%
+            \setbox\z@=\lastbox
+            \ifdim\wd\z@>\z@ \edef\tabu@thetarget
+                {\the\dimexpr -\wd\z@+\tabudefaulttarget}\fi
+            \box\z@}%
+    \fi\fi
+}% \tabu@indent
+\def\tabu@setcleanup {% saves last global assignments
+    \ifodd 1\ifmmode \else \iftabu@long \else 0\fi\fi\relax
+        \def\tabu@aftergroupcleanup{%
+                \def\tabu@aftergroupcleanup{\aftergroup\tabu@cleanup}}%
+    \else
+        \def\tabu@aftergroupcleanup{%
+                \aftergroup\aftergroup\aftergroup\tabu@cleanup
+                \let\tabu@aftergroupcleanup \relax}%
+    \fi
+    \let\tabu@arc@Gsave         \tabu@arc@G
+    \let\tabu@arc@G             \tabu@arc@L   % <init>
+    \let\tabu@drsc@Gsave        \tabu@drsc@G
+    \let\tabu@drsc@G            \tabu@drsc@L  % <init>
+    \let\tabu@ls@Gsave          \tabu@ls@G
+    \let\tabu@ls@G              \tabu@ls@L    % <init>
+    \let\tabu@rc@Gsave          \tabu@rc@G
+    \let\tabu@rc@G              \tabu@rc@L    % <init>
+    \let\tabu@evr@Gsave         \tabu@evr@G
+    \let\tabu@evr@G             \tabu@evr@L   % <init>
+    \let\tabu@celllalign@save   \tabu@celllalign
+    \let\tabu@cellralign@save   \tabu@cellralign
+    \let\tabu@cellleft@save     \tabu@cellleft
+    \let\tabu@cellright@save    \tabu@cellright
+    \let\tabu@@celllalign@save  \tabu@@celllalign
+    \let\tabu@@cellralign@save  \tabu@@cellralign
+    \let\tabu@@cellleft@save    \tabu@@cellleft
+    \let\tabu@@cellright@save   \tabu@@cellright
+    \let\tabu@rowfontreset@save \tabu@rowfontreset
+    \let\tabu@@rowfontreset@save\tabu@@rowfontreset
+    \let\tabu@rowfontreset      \@empty
+    \edef\tabu@alloc@save      {\the\tabu@alloc}%   restore at \tabu@reset
+    \edef\c@taburow@save       {\the\c@taburow}%
+    \edef\tabu@naturalX@save   {\the\tabu@naturalX}%
+    \let\tabu@naturalXmin@save  \tabu@naturalXmin
+    \let\tabu@naturalXmax@save  \tabu@naturalXmax
+    \let\tabu@mkarstrut@save    \tabu@mkarstrut
+    \edef\tabu@clarstrut{%
+        \extrarowheight \the\dimexpr \ht\@arstrutbox-\ht\strutbox \relax
+        \extrarowdepth \the\dimexpr \dp\@arstrutbox-\dp\strutbox \relax
+        \let\noexpand\@arraystretch \@ne \noexpand\tabu@rearstrut}%
+}% \tabu@setcleanup
+\def\tabu@cleanup {\begingroup
+    \globaldefs\@ne         \tabu@everyrowtrue
+    \let\tabu@arc@G         \tabu@arc@Gsave
+    \let\CT@arc@            \tabu@arc@G
+    \let\tabu@drsc@G        \tabu@drsc@Gsave
+    \let\CT@drsc@           \tabu@drsc@G
+    \let\tabu@ls@G          \tabu@ls@Gsave
+    \let\tabu@ls@           \tabu@ls@G
+    \let\tabu@rc@G          \tabu@rc@Gsave
+    \let\tabu@rc@           \tabu@rc@G
+    \let\CT@do@color        \relax
+    \let\tabu@evr@G         \tabu@evr@Gsave
+    \let\tabu@celllalign    \tabu@celllalign@save
+    \let\tabu@cellralign    \tabu@cellralign@save
+    \let\tabu@cellleft      \tabu@cellleft@save
+    \let\tabu@cellright     \tabu@cellright@save
+    \let\tabu@@celllalign   \tabu@@celllalign@save
+    \let\tabu@@cellralign   \tabu@@cellralign@save
+    \let\tabu@@cellleft     \tabu@@cellleft@save
+    \let\tabu@@cellright    \tabu@@cellright@save
+    \let\tabu@rowfontreset  \tabu@rowfontreset@save
+    \let\tabu@@rowfontreset \tabu@@rowfontreset@save
+    \tabu@naturalX         =\tabu@naturalX@save
+    \let\tabu@naturalXmax   \tabu@naturalXmax@save
+    \let\tabu@naturalXmin   \tabu@naturalXmin@save
+    \let\tabu@mkarstrut     \tabu@mkarstrut@save
+    \c@taburow             =\c@taburow@save
+    \ifcase \tabu@nested    \tabu@alloc \m@ne\fi
+    \endgroup               % <end of \globaldefs>
+    \ifcase \tabu@nested
+        \the\tabu@footnotes \global\tabu@footnotes{}%
+        \tabu@afterendpar   \tabu@elapsedtime
+    \fi
+    \tabu@clarstrut
+    \everyrow\expandafter   {\tabu@evr@G}%
+}% \tabu@cleanup
+\let\tabu@afterendpar \relax
+\def\tabu@setreset {%
+    \edef\tabu@savedparams {%         \relax for \tabu@message@save
+        \ifmmode \col@sep \the\arraycolsep
+        \else    \col@sep \the\tabcolsep \fi    \relax
+        \arrayrulewidth   \the\arrayrulewidth   \relax
+        \doublerulesep    \the\doublerulesep    \relax
+        \extratabsurround \the\extratabsurround \relax
+        \extrarowheight   \the\extrarowheight   \relax
+        \extrarowdepth    \the\extrarowdepth    \relax
+        \abovetabulinesep \the\abovetabulinesep \relax
+        \belowtabulinesep \the\belowtabulinesep \relax
+        \def\noexpand\arraystretch{\arraystretch}%
+        \ifdefined\minrowclearance \minrowclearance\the\minrowclearance\relax\fi}%
+    \begingroup
+        \@temptokena\expandafter{\tabu@savedparams}% => only for \savetabu / \usetabu
+        \ifx \tabu@arc@L\relax  \else \tabu@setsave \tabu@arc@L \fi
+        \ifx \tabu@drsc@L\relax \else \tabu@setsave \tabu@drsc@L \fi
+        \tabu@setsave \tabu@ls@L      \tabu@setsave \tabu@evr@L
+        \expandafter \endgroup \expandafter
+            \def\expandafter\tabu@saved@ \expandafter{\the\@temptokena
+                \let\tabu@arc@G  \tabu@arc@L
+                \let\tabu@drsc@G \tabu@drsc@L
+                \let\tabu@ls@G   \tabu@ls@L
+                \let\tabu@rc@G   \tabu@rc@L
+                \let\tabu@evr@G  \tabu@evr@L}%
+    \def\tabu@reset{\tabu@savedparams
+        \tabu@everyrowtrue  \c@taburow \z@
+        \let\CT@arc@        \tabu@arc@L
+        \let\CT@drsc@       \tabu@drsc@L
+        \let\tabu@ls@       \tabu@ls@L
+        \let\tabu@rc@       \tabu@rc@L
+        \global\tabu@alloc  \tabu@alloc@save
+        \everyrow\expandafter{\tabu@evr@L}}%
+}% \tabu@reset
+\def\tabu@setsave #1{\expandafter\tabu@sets@ve #1\@nil{#1}}
+\long\def\tabu@sets@ve #1\@nil #2{\@temptokena\expandafter{\the\@temptokena \def#2{#1}}}
+%% The Rewriting Process -------------------------------------------
+\def\tabu@newcolumntype #1{%
+    \expandafter\tabu@new@columntype
+        \csname NC@find@\string#1\expandafter\endcsname
+        \csname NC@rewrite@\string#1\endcsname
+        {#1}%
+}% \tabu@newcolumntype
+\def\tabu@new@columntype #1#2#3{%
+    \def#1##1#3{\NC@{##1}}%
+    \let#2\relax \newcommand*#2%
+}% \tabu@new@columntype
+\def\tabu@privatecolumntype #1{%
+    \expandafter\tabu@private@columntype
+        \csname NC@find@\string#1\expandafter\endcsname
+        \csname NC@rewrite@\string#1\expandafter\endcsname
+        \csname tabu@NC@find@\string#1\expandafter\endcsname
+        \csname tabu@NC@rewrite@\string#1\endcsname
+        {#1}%
+}% \tabu@privatecolumntype
+\def\tabu@private@columntype#1#2#3#4{%
+    \g@addto@macro\tabu@privatecolumns{\let#1#3\let#2#4}%
+    \tabu@new@columntype#3#4%
+}% \tabu@private@columntype
+\let\tabu@privatecolumns \@empty
+\newcommand*\tabucolumn [1]{\expandafter \def \expandafter
+    \tabu@highprioritycolumns\expandafter{\tabu@highprioritycolumns
+                                          \NC@do #1}}%
+\let\tabu@highprioritycolumns \@empty
+%% The  |  ``column'' : rewriting process --------------------------
+\tabu@privatecolumntype |{\tabu@rewritevline}
+\newcommand*\tabu@rewritevline[1][]{\tabu@vlinearg{#1}%
+                \expandafter \NC@find \tabu@rewritten}
+\def\tabu@lines #1{%
+    \ifx|#1\else \tabu@privatecolumntype #1{\tabu@rewritevline}\fi
+    \NC@list\expandafter{\the\NC@list \NC@do #1}%
+}% \tabu@lines@
+\def\tabu@vlinearg #1{%
+    \ifx\\#1\\\def\tabu@thestyle {\tabu@ls@}%
+    \else\tabu@getline {#1}%
+    \fi
+    \def\tabu@rewritten ##1{\def\tabu@rewritten{!{##1\tabu@thevline}}%
+    }\expandafter\tabu@rewritten\expandafter{\tabu@thestyle}%
+    \expandafter \tabu@keepls \tabu@thestyle \@nil
+}% \tabu@vlinearg
+\def\tabu@keepls #1\@nil{%
+    \ifcat $\@cdr #1\@nil $%
+    \ifx \relax#1\else
+    \ifx \tabu@ls@#1\else
+        \let#1\relax
+        \xdef\tabu@mkpreambuffer{\tabu@mkpreambuffer
+                \tabu@savels\noexpand#1}\fi\fi\fi
+}% \tabu@keepls
+\def\tabu@thevline {\begingroup
+    \ifdefined\tabu@leaders
+        \setbox\@tempboxa=\vtop to\dimexpr
+                      \ht\@arstrutbox+\dp\@arstrutbox{{\tabu@thevleaders}}%
+        \ht\@tempboxa=\ht\@arstrutbox \dp\@tempboxa=\dp\@arstrutbox
+        \box\@tempboxa
+    \else
+                \tabu@thevrule
+    \fi             \endgroup
+}% \tabu@thevline
+\def\tabu@savels #1{%
+    \expandafter\let\csname\string#1\endcsname #1%
+    \expandafter\def\expandafter\tabu@reset\expandafter{\tabu@reset
+                                                    \tabu@resetls#1}}%
+\def\tabu@resetls #1{\expandafter\let\expandafter#1\csname\string#1\endcsname}%
+%% \multicolumn inside tabu environment -----------------------------
+\tabu@newcolumntype \tabu@rewritemulticolumn{%
+    \aftergroup \tabu@endrewritemulticolumn % after \@mkpream group
+    \NC@list{\NC@do *}\tabu@textbar \tabu@lines
+    \tabu@savedecl
+    \tabu@privatecolumns
+    \NC@list\expandafter{\the\expandafter\NC@list \tabu@NC@list}%
+    \let\tabu@savels \relax
+    \NC@find
+}% \tabu@rewritemulticolumn
+\def\tabu@endrewritemulticolumn{\gdef\tabu@mkpreambuffer{}\endgroup}
+\def\tabu@multicolumn{\tabu@ifenvir \tabu@multic@lumn \tabu@multicolumnORI}
+\long\def\tabu@multic@lumn #1#2#3{\multispan{#1}\begingroup
+    \tabu@everyrowtrue
+    \NC@list{\NC@do \tabu@rewritemulticolumn}%
+    \expandafter\@gobbletwo % gobbles \multispan{#1}
+         \tabu@multicolumnORI{#1}{\tabu@rewritemulticolumn #2}%
+                {\iftabuscantokens \tabu@rescan \else \expandafter\@firstofone \fi
+                {#3}}%
+}% \tabu@multic@lumn
+%% The X column(s): rewriting process -----------------------------
+\tabu@privatecolumntype X[1][]{\begingroup \tabu@siunitx{\endgroup \tabu@rewriteX {#1}}}
+\def\tabu@nosiunitx #1{#1{}{}\expandafter \NC@find \tabu@rewritten }
+\def\tabu@siunitx   #1{\@ifnextchar \bgroup
+                     {\tabu@rewriteX@Ss{#1}}
+                      {\tabu@nosiunitx{#1}}}
+\def\tabu@rewriteX@Ss #1#2{\@temptokena{}%
+    \@defaultunits \let\tabu@temp =#2\relax\@nnil
+    \ifodd 1\ifx S\tabu@temp \else \ifx s\tabu@temp \else 0 \fi\fi
+        \def\NC@find{\def\NC@find >####1####2<####3\relax{#1 {####1}{####3}%
+            }\expandafter\NC@find \the\@temptokena \relax
+        }\expandafter\NC@rewrite@S \@gobble #2\relax
+    \else \tabu@siunitxerror
+    \fi
+    \expandafter \NC@find \tabu@rewritten
+}% \tabu@rewriteX@Ss
+\def\tabu@siunitxerror {\PackageError{tabu}{Not a S nor s column !
+        \MessageBreak X column can only embed siunitx S or s columns}\@ehd
+}% \tabu@siunitxerror
+\def\tabu@rewriteX #1#2#3{\tabu@Xarg {#1}{#2}{#3}%
+    \iftabu@measuring
+    \else \tabu@measuringtrue % first X column found in the preamble
+        \let\@halignto \relax   \let\tabu@halignto \relax
+        \iftabu@spread \tabu@spreadtarget \tabu@target \tabu@target \z@
+        \else          \tabu@spreadtarget \z@ \fi
+        \ifdim \tabu@target=\z@
+                \setlength\tabu@target \tabu@thetarget
+                \tabu@message{\tabu@message@defaulttarget}%
+        \else   \tabu@message{\tabu@message@target}\fi
+    \fi
+}% \tabu@rewriteX
+\def\tabu@rewriteXrestore #1#2#3{\let\@halignto \relax
+                                \def\tabu@rewritten{l}}
+\def\tabu@Xarg #1#2#3{%
+   \advance\tabu@Xcol \@ne      \let\tabu@Xlcr  \@empty
+   \let\tabu@Xdisp    \@empty   \let\tabu@Xmath \@empty
+    \ifx\\#1\\%    <shortcut when no option>
+         \def\tabu@rewritten{p}\tabucolX \p@        % <default coef = 1>
+    \else
+         \let\tabu@rewritten \@empty   \let\tabu@temp \@empty  \tabucolX \z@
+         \tabu@Xparse {}#1\relax
+    \fi
+    \tabu@Xrewritten{#2}{#3}%
+}% \tabu@Xarg
+\def\tabu@Xparse #1{\futurelet\@let@token \tabu@Xtest}
+\expandafter\def\expandafter\tabu@Xparsespace\space{\tabu@Xparse{}}
+\def\tabu@Xtest{%
+   \ifcase \ifx \relax\@let@token \z@ \else
+           \if ,\@let@token \m@ne\else
+           \if p\@let@token 1\else
+           \if m\@let@token 2\else
+           \if b\@let@token 3\else
+           \if l\@let@token 4\else
+           \if c\@let@token 5\else
+           \if r\@let@token 6\else
+           \if j\@let@token 7\else
+           \if L\@let@token 8\else
+           \if C\@let@token 9\else
+           \if R\@let@token 10\else
+           \if J\@let@token 11\else
+           \ifx \@sptoken\@let@token 12\else
+           \if .\@let@token 13\else
+           \if -\@let@token 13\else
+           \ifcat $\@let@token 14\else
+           15\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\relax
+   \or \tabu@Xtype {p}%
+   \or \tabu@Xtype {m}%
+   \or \tabu@Xtype {b}%
+   \or \tabu@Xalign \raggedright\relax
+   \or \tabu@Xalign \centering\relax
+   \or \tabu@Xalign \raggedleft\relax
+   \or \tabu@Xalign \tabu@justify\relax
+   \or \tabu@Xalign \RaggedRight\raggedright
+   \or \tabu@Xalign \Centering\centering
+   \or \tabu@Xalign \RaggedLeft\raggedleft
+   \or \tabu@Xalign \justifying\tabu@justify
+   \or \expandafter \tabu@Xparsespace
+   \or \expandafter \tabu@Xcoef
+   \or \expandafter \tabu@Xm@th
+   \or \tabu@Xcoef{}%
+   \else\expandafter \tabu@Xparse
+   \fi
+}% \tabu@Xtest
+\def\tabu@Xalign #1#2{%
+    \ifx \tabu@Xlcr\@empty \else \PackageWarning{tabu}
+       {Duplicate horizontal alignment specification}\fi
+    \ifdefined#1\def\tabu@Xlcr{#1}\let#1\relax
+    \else       \def\tabu@Xlcr{#2}\let#2\relax\fi
+    \expandafter\tabu@Xparse
+}% \tabu@Xalign
+\def\tabu@Xtype #1{%
+    \ifx \tabu@rewritten\@empty \else \PackageWarning{tabu}
+            {Duplicate vertical alignment specification}\fi
+    \def\tabu@rewritten{#1}\expandafter\tabu@Xparse
+}% \tabu@Xtype
+\def\tabu@Xcoef#1{\edef\tabu@temp{\tabu@temp#1}%
+    \afterassignment\tabu@Xc@ef \tabu@cnt\number\if-#10\fi
+}% \tabu@Xcoef
+\def\tabu@Xc@ef{\advance\tabucolX \tabu@temp\the\tabu@cnt\p@
+    \tabu@Xparse{}%
+}% \tabu@Xc@ef
+\def\tabu@Xm@th #1{\futurelet \@let@token \tabu@Xd@sp}
+\def\tabu@Xd@sp{\let\tabu@Xmath=$%
+    \ifx $\@let@token \def\tabu@Xdisp{\displaystyle}%
+            \expandafter\tabu@Xparse
+    \else   \expandafter\tabu@Xparse\expandafter{\expandafter}%
+    \fi
+}% \tabu@Xd@sp
+\def\tabu@Xrewritten {%
+   \ifx  \tabu@rewritten\@empty \def\tabu@rewritten{p}\fi
+   \ifdim \tabucolX<\z@         \tabu@negcoeftrue
+   \else\ifdim \tabucolX=\z@    \tabucolX \p@
+   \fi\fi
+   \edef\tabu@temp{{\the\tabu@Xcol}{\tabu@strippt\tabucolX}}%
+   \edef\tabu@Xcoefs{\tabu@Xcoefs    \tabu@      \tabu@temp}%
+   \edef\tabu@rewritten ##1##2{\def\noexpand\tabu@rewritten{%
+        >{\tabu@Xlcr \ifx$\tabu@Xmath$\tabu@Xdisp\fi ##1}%
+                    \tabu@rewritten {\tabu@hsize \tabu@temp}%
+        <{##2\ifx$\tabu@Xmath$\fi}}%
+   }\tabu@rewritten
+}% \tabu@Xrewritten
+\def\tabu@hsize #1#2{%
+    \ifdim #2\p@<\z@
+        \ifdim \tabucolX=\maxdimen \tabu@wd{#1}\else
+        \ifdim \tabu@wd{#1}<-#2\tabucolX \tabu@wd{#1}\else -#2\tabucolX\fi
+        \fi
+   \else #2\tabucolX
+   \fi
+}% \tabu@hsize
+%% \usetabu  and  \preamble: rewriting process ---------------------
+\tabu@privatecolumntype \usetabu [1]{%
+    \ifx\\#1\\\tabu@saveerr{}\else
+        \@ifundefined{tabu@saved@\string#1}
+            {\tabu@saveerr{#1}}
+            {\let\tabu@rewriteX \tabu@rewriteXrestore
+             \csname tabu@saved@\string#1\expandafter\endcsname\expandafter\@ne}%
+    \fi
+}% \NC@rewrite@\usetabu
+\tabu@privatecolumntype \preamble [1]{%
+    \ifx\\#1\\\tabu@saveerr{}\else
+        \@ifundefined{tabu@saved@\string#1}
+            {\tabu@saveerr{#1}}
+            {\csname tabu@saved@\string#1\expandafter\endcsname\expandafter\z@}%
+    \fi
+}% \NC@rewrite@\preamble
+%% Controlling the rewriting process -------------------------------
+\tabu@newcolumntype \tabu@rewritefirst{%
+    \iftabu@long    \aftergroup \tabu@longpream  % <the whole implementation is here !>
+    \else           \aftergroup \tabu@pream
+    \fi
+    \let\tabu@          \relax      \let\tabu@hsize     \relax
+    \let\tabu@Xcoefs    \@empty     \let\tabu@savels    \relax
+    \tabu@Xcol          \z@         \tabu@cnt           \tw@
+    \gdef\tabu@mkpreambuffer{\tabu@{}}\tabu@measuringfalse
+    \global\setbox\@arstrutbox \box\@arstrutbox
+    \NC@list{\NC@do *}\tabu@textbar \tabu@lines
+    \NC@list\expandafter{\the\NC@list \NC@do X}%
+    \iftabu@siunitx     % <siunitx S and s columns>
+            \NC@list\expandafter{\the\NC@list \NC@do S\NC@do s}\fi
+    \NC@list\expandafter{\the\expandafter\NC@list \tabu@highprioritycolumns}%
+    \expandafter\def\expandafter\tabu@NC@list\expandafter{%
+                    \the\expandafter\NC@list \tabu@NC@list}%    % * | X S <original>
+    \NC@list\expandafter{\expandafter \NC@do \expandafter\usetabu
+                         \expandafter \NC@do \expandafter\preamble
+                         \the\NC@list \NC@do \tabu@rewritemiddle
+                                      \NC@do \tabu@rewritelast}%
+    \tabu@savedecl
+    \tabu@privatecolumns
+    \edef\tabu@prev{\the\@temptokena}\NC@find \tabu@rewritemiddle
+}% NC@rewrite@\tabu@rewritefirst
+\tabu@newcolumntype \tabu@rewritemiddle{%
+    \edef\tabu@temp{\the\@temptokena}\NC@find \tabu@rewritelast
+}% \NC@rewrite@\tabu@rewritemiddle
+\tabu@newcolumntype \tabu@rewritelast{%
+    \ifx \tabu@temp\tabu@prev   \advance\tabu@cnt \m@ne
+            \NC@list\expandafter{\tabu@NC@list \NC@do \tabu@rewritemiddle
+                                               \NC@do \tabu@rewritelast}%
+    \else \let\tabu@prev\tabu@temp
+    \fi
+    \ifcase \tabu@cnt   \expandafter\tabu@endrewrite
+    \else               \expandafter\NC@find \expandafter\tabu@rewritemiddle
+    \fi
+}% \NC@rewrite@\tabu@rewritelast
+%% Choosing the strategy --------------------------------------------
+\def\tabu@endrewrite {%
+    \let\tabu@temp \NC@find
+    \ifx \@arrayright\relax \let\@arrayright \@empty  \fi
+    \count@=%
+        \ifx \@finalstrut\tabu@finalstrut \z@ % outer in mode 0 print
+             \iftabu@measuring
+                \xdef\tabu@mkpreambuffer{\tabu@mkpreambuffer
+                    \tabu@target        \csname tabu@\the\tabu@nested.T\endcsname
+                    \tabucolX           \csname tabu@\the\tabu@nested.X\endcsname
+                    \edef\@halignto {\ifx\@arrayright\@empty to\tabu@target\fi}}%
+             \fi
+        \else\iftabu@measuring        4       % X columns
+                \xdef\tabu@mkpreambuffer{\tabu@{\tabu@mkpreambuffer
+                    \tabu@target        \the\tabu@target
+                    \tabu@spreadtarget  \the\tabu@spreadtarget}%
+                    \def\noexpand\tabu@Xcoefs{\tabu@Xcoefs}%
+                    \edef\tabu@halignto{\ifx \@arrayright\@empty to\tabu@target\fi}}%
+                 \let\tabu@Xcoefs \relax
+             \else\ifcase\tabu@nested \thr@@  % outer, no X
+                                      \global\let\tabu@afterendpar \relax
+                  \else               \@ne    % inner, no X, outer in mode 1 or 2
+                  \fi
+                  \ifdefined\tabu@usetabu
+                  \else \ifdim\tabu@target=\z@
+                  \else \let\tabu@temp \tabu@extracolsep
+                  \fi\fi
+             \fi
+        \fi
+    \xdef\tabu@mkpreambuffer{\count@ \the\count@ \tabu@mkpreambuffer}%
+    \tabu@temp
+}% \tabu@endrewrite
+\def\tabu@extracolsep{\@defaultunits    \expandafter\let
+    \expandafter\tabu@temp \expandafter=\the\@temptokena \relax\@nnil
+    \ifx \tabu@temp\@sptoken
+        \expandafter\tabu@gobblespace \expandafter\tabu@extracolsep
+    \else
+        \edef\tabu@temp{\noexpand\NC@find
+            \if |\noexpand\tabu@temp        @%
+            \else\if !\noexpand\tabu@temp   @%
+            \else                           !%
+            \fi\fi
+            {\noexpand\extracolsep\noexpand\@flushglue}}%
+    \fi
+    \tabu@temp
+}% \tabu@extrac@lsep
+%% Implementing the strategy ----------------------------------------
+\long\def\tabu@pream #1\@preamble {%
+    \let\tabu@ \tabu@@  \tabu@mkpreambuffer     \tabu@aftergroupcleanup
+    \NC@list\expandafter {\tabu@NC@list}%    in case of nesting...
+    \ifdefined\tabu@usetabu \tabu@usetabu \tabu@target \z@ \fi
+    \let\tabu@savedpreamble \@preamble
+    \global\let\tabu@elapsedtime \relax
+    \tabu@thebody ={#1\tabu@aftergroupcleanup}%
+    \tabu@thebody =\expandafter{\the\expandafter\tabu@thebody
+                                                \@preamble}%
+    \edef\tabuthepreamble {\the\tabu@thebody}% ( no @ allowed for \scantokens )
+    \tabu@select
+}% \tabu@pream
+\long\def\tabu@longpream #1\LT@bchunk #2\LT@bchunk{%
+    \let\tabu@ \tabu@@  \tabu@mkpreambuffer     \tabu@aftergroupcleanup
+    \NC@list\expandafter {\tabu@NC@list}%    in case of nesting...
+    \let\tabu@savedpreamble \@preamble
+    \global\let\tabu@elapsedtime \relax
+    \tabu@thebody ={#1\LT@bchunk #2\tabu@aftergroupcleanup \LT@bchunk}%
+    \edef\tabuthepreamble {\the\tabu@thebody}% ( no @ allowed for \scantokens )
+    \tabu@select
+}% \tabu@longpream
+\def\tabu@select {%
+    \ifnum\tabu@nested>\z@ \tabuscantokensfalse \fi
+    \ifnum \count@=\@ne \iftabu@measuring \count@=\tw@ \fi\fi
+    \ifcase \count@
+        \global\let\tabu@elapsedtime \relax
+        \tabu@seteverycr
+        \expandafter \tabuthepreamble       % vertical adjustment (inherited from outer)
+    \or      % exit in vertical measure + struts per cell because no X and outer in mode 3
+        \tabu@evr{\tabu@verticalinit}\tabu@celllalign@def{\tabu@verticalmeasure}%
+        \def\tabu@cellralign{\tabu@verticalspacing}%
+        \tabu@seteverycr
+        \expandafter \tabuthepreamble
+    \or                            % exit without measure because no X and outer in mode 4
+        \tabu@evr{}\tabu@celllalign@def{}\let\tabu@cellralign \@empty
+        \tabu@seteverycr
+        \expandafter \tabuthepreamble
+    \else                                   % needs trials
+        \tabu@evr{}\tabu@celllalign@def{}\let\tabu@cellralign \@empty
+        \tabu@savecounters
+        \expandafter \tabu@setstrategy
+    \fi
+}% \tabu@select
+\def\tabu@@ {\gdef\tabu@mkpreambuffer}
+%% Protections to set up before trials ------------------------------
+\def\tabu@setstrategy {\begingroup  % <trials group>
+    \tabu@trialh@@k    \tabu@cnt    \z@  % number of trials
+    \hbadness          \@M          \let\hbadness          \@tempcnta
+    \hfuzz             \maxdimen    \let\hfuzz             \@tempdima
+    \let\write         \tabu@nowrite\let\GenericError      \tabu@GenericError
+    \let\savetabu      \@gobble     \let\tabudefaulttarget \linewidth
+    \let\@footnotetext \@gobble     \let\@xfootnote        \tabu@xfootnote
+    \let\color         \tabu@nocolor\let\rowcolor          \tabu@norowcolor
+    \let\tabu@aftergroupcleanup \relax % only after the last trial
+    \tabu@mkpreambuffer
+    \ifnum \count@>\thr@@ \let\@halignto \@empty  \tabucolX@init
+                          \def\tabu@lasttry{\m@ne\p@}\fi
+    \begingroup \iffalse{\fi \ifnum0=`}\fi
+        \toks@{}\def\tabu@stack{b}\iftabuscantokens \endlinechar=10 \obeyspaces \fi %
+                                  \tabu@collectbody \tabu@strategy %
+}% \tabu@setstrategy
+\def\tabu@savecounters{%
+    \def\@elt ##1{\csname c@##1\endcsname\the\csname c@##1\endcsname}%
+    \edef\tabu@clckpt {\begingroup \globaldefs=\@ne \cl@@ckpt \endgroup}\let\@elt \relax
+}% \tabu@savecounters
+\def\tabucolX@init {%  \tabucolX <= \tabu@target / (sum coefs > 0)
+    \dimen@ \z@ \tabu@Xsum \z@ \tabucolX \z@ \let\tabu@ \tabu@Xinit \tabu@Xcoefs
+    \ifdim \dimen@>\z@
+        \@tempdima \dimexpr \tabu@target *\p@/\dimen@ + \tabu@hfuzz\relax
+        \ifdim \tabucolX<\@tempdima \tabucolX \@tempdima \fi
+    \fi
+}% \tabucolX@init
+\def\tabu@Xinit #1#2{\tabu@Xcol #1 \advance \tabu@Xsum
+    \ifdim #2\p@>\z@ #2\p@  \advance\dimen@ #2\p@
+    \else           -#2\p@  \tabu@negcoeftrue
+                            \@tempdima \dimexpr \tabu@target*\p@/\dimexpr-#2\p@\relax \relax
+                            \ifdim \tabucolX<\@tempdima \tabucolX \@tempdima \fi
+                            \tabu@wddef{#1}{0pt}%
+    \fi
+}% \tabu@Xinit
+%% Collecting the environment body ----------------------------------
+\long\def\tabu@collectbody #1#2\end #3{%
+    \edef\tabu@stack{\tabu@pushbegins #2\begin\end\expandafter\@gobble\tabu@stack}%
+    \ifx \tabu@stack\@empty
+        \toks@\expandafter{\expandafter\tabu@thebody\expandafter{\the\toks@ #2}%
+                \def\tabu@end@envir{\end{#3}}%
+                \iftabuscantokens
+                    \iftabu@long \def\tabu@endenvir {\end{#3}\tabu@gobbleX}%
+                    \else        \def\tabu@endenvir {\let\endarray \@empty
+                                                     \end{#3}\tabu@gobbleX}%
+                    \fi
+                \else           \def\tabu@endenvir  {\end{#3}}\fi}%
+        \let\tabu@collectbody \tabu@endofcollect
+    \else\def\tabu@temp{#3}%
+        \ifx \tabu@temp\@empty \toks@\expandafter{\the\toks@ #2\end }%
+        \else \ifx\tabu@temp\tabu@@spxiii \toks@\expandafter{\the\toks@ #2\end #3}%
+        \else \ifx\tabu@temp\tabu@X \toks@\expandafter{\the\toks@ #2\end #3}%
+        \else \toks@\expandafter{\the\toks@ #2\end{#3}}%
+        \fi\fi\fi
+    \fi
+    \tabu@collectbody{#1}%
+}% \tabu@collectbody
+\long\def\tabu@pushbegins#1\begin#2{\ifx\end#2\else b\expandafter\tabu@pushbegins\fi}%
+\def\tabu@endofcollect #1{\ifnum0=`{}\fi
+                          \expandafter\endgroup \the\toks@  #1%
+}% \tabu@endofcollect
+%% The trials: switching between strategies -------------------------
+\def\tabu@strategy {\relax  % stops \count@ assignment !
+    \ifcase\count@          % case 0 = print with vertical adjustment (outer is finished)
+        \expandafter \tabu@endoftrials
+    \or                     % case 1 = exit in vertical measure (outer in mode 3)
+        \expandafter\xdef\csname tabu@\the\tabu@nested.T\endcsname{\the\tabu@target}%
+        \expandafter\xdef\csname tabu@\the\tabu@nested.X\endcsname{\the\tabucolX}%
+        \expandafter \tabu@endoftrials
+    \or                     % case 2 = exit with a rule replacing the table (outer in mode 4)
+        \expandafter \tabu@quickend
+    \or                     % case 3 = outer is in mode 3 because of no X
+        \begingroup
+            \tabu@evr{\tabu@verticalinit}\tabu@celllalign@def{\tabu@verticalmeasure}%
+            \def\tabu@cellralign{\tabu@verticalspacing}%
+            \expandafter \tabu@measuring
+    \else                   % case 4 = horizontal measure
+        \begingroup
+            \global\let\tabu@elapsedtime \tabu@message@etime
+            \long\def\multicolumn##1##2##3{\multispan{##1}}%
+            \let\tabu@startpboxORI \@startpbox
+            \iftabu@spread
+                    \def\tabu@naturalXmax {\z@}%
+                    \let\tabu@naturalXmin \tabu@naturalXmax
+                    \tabu@evr{\global\tabu@naturalX \z@}%
+                    \let\@startpbox \tabu@startpboxmeasure
+            \else\iftabu@negcoef
+                    \let\@startpbox \tabu@startpboxmeasure
+            \else   \let\@startpbox \tabu@startpboxquick
+            \fi\fi
+            \expandafter \tabu@measuring
+    \fi
+}% \tabu@strategy
+\def\tabu@measuring{\expandafter \tabu@trial \expandafter
+                                                \count@ \the\count@ \tabu@endtrial
+}% \tabu@measuring
+\def\tabu@trial{\iftabu@long \tabu@longtrial \else \tabu@shorttrial \fi}
+\def\tabu@shorttrial {\setbox\tabu@box \hbox\bgroup \tabu@seteverycr
+    \ifx \tabu@savecounters\relax \else
+                \let\tabu@savecounters \relax \tabu@clckpt \fi
+    $\iftabuscantokens \tabu@rescan \else \expandafter\@secondoftwo \fi
+       \expandafter{\expandafter \tabuthepreamble
+                         \the\tabu@thebody
+                         \csname tabu@adl@endtrial\endcsname
+                         \endarray}$\egroup             % got \tabu@box
+}% \tabu@shorttrial
+\def\tabu@longtrial {\setbox\tabu@box \hbox\bgroup \tabu@seteverycr
+    \ifx \tabu@savecounters\relax \else
+                \let\tabu@savecounters \relax \tabu@clckpt \fi
+    \iftabuscantokens \tabu@rescan \else \expandafter\@secondoftwo \fi
+       \expandafter{\expandafter \tabuthepreamble
+                         \the\tabu@thebody
+                         \tabuendlongtrial}\egroup      % got \tabu@box
+}% \tabu@longtrial
+\def\tabuendlongtrial{% no @ allowed for \scantokens
+    \LT@echunk  \global\setbox\@ne \hbox{\unhbox\@ne}\kern\wd\@ne
+                \LT@get@widths
+}% \tabuendlongtrial
+\def\tabu@adl@endtrial{% <arydshln in nested trials - problem for global column counters!>
+    \crcr \noalign{\global\adl@ncol \tabu@nbcols}}% anything global is crap, junky and fails !
+\def\tabu@seteverycr {\tabu@reset
+    \everycr \expandafter{\the\everycr  \tabu@everycr}%
+    \let\everycr \tabu@noeverycr                      % <for ialign>
+}% \tabu@seteverycr
+\def\tabu@noeverycr{{\aftergroup\tabu@restoreeverycr \afterassignment}\toks@}
+\def\tabu@restoreeverycr {\let\everycr \tabu@@everycr}
+\def\tabu@everycr {\iftabu@everyrow \noalign{\tabu@everyrow}\fi}
+\def\tabu@endoftrials {%
+    \iftabuscantokens   \expandafter\@firstoftwo
+    \else               \expandafter\@secondoftwo
+    \fi
+        {\expandafter \tabu@closetrialsgroup \expandafter
+         \tabu@rescan \expandafter{%
+                    \expandafter\tabuthepreamble
+                        \the\expandafter\tabu@thebody
+                                    \iftabu@long \else \endarray \fi}}
+        {\expandafter\tabu@closetrialsgroup \expandafter
+                    \tabuthepreamble
+                        \the\tabu@thebody}%
+                                        \tabu@endenvir      % Finish !
+}% \tabu@endoftrials
+\def\tabu@closetrialsgroup {%
+    \toks@\expandafter{\tabu@endenvir}%
+    \edef\tabu@bufferX{\endgroup
+        \tabucolX       \the\tabucolX
+        \tabu@target    \the\tabu@target
+        \tabu@cnt       \the\tabu@cnt
+        \def\noexpand\tabu@endenvir{\the\toks@}%
+        %Quid de \@halignto = \tabu@halignto ??
+    }% \tabu@bufferX
+    \tabu@bufferX
+    \ifcase\tabu@nested % print out (outer in mode 0)
+        \global\tabu@cnt \tabu@cnt
+        \tabu@evr{\tabu@verticaldynamicadjustment}%
+        \tabu@celllalign@def{\everypar{}}\let\tabu@cellralign \@empty
+        \let\@finalstrut \tabu@finalstrut
+    \else               % vertical measure of nested tabu
+        \tabu@evr{\tabu@verticalinit}%
+        \tabu@celllalign@def{\tabu@verticalmeasure}%
+        \def\tabu@cellralign{\tabu@verticalspacing}%
+    \fi
+    \tabu@clckpt \let\@halignto \tabu@halignto
+    \let\@halignto \@empty
+    \tabu@seteverycr
+    \ifdim \tabustrutrule>\z@ \ifnum\tabu@nested=\z@
+        \setbox\@arstrutbox \box\voidb@x % force \@arstrutbox to be rebuilt (visible struts)
+    \fi\fi
+}% \tabu@closetrialsgroup
+\def\tabu@quickend {\expandafter \endgroup \expandafter
+                        \tabu@target \the\tabu@target \tabu@quickrule
+                        \let\endarray \relax \tabu@endenvir
+}% \tabu@quickend
+\def\tabu@endtrial {\relax      % stops \count@ assignment !
+    \ifcase \count@ \tabu@err   % case 0 = impossible here
+    \or             \tabu@err   % case 1 = impossible here
+    \or             \tabu@err   % case 2 = impossible here
+    \or                         % case 3 = outer goes into mode 0
+        \def\tabu@bufferX{\endgroup}\count@ \z@
+    \else                       % case 4 = outer goes into mode 3
+        \iftabu@spread  \tabu@spreadarith % inner into mode 1 (outer in mode 3)
+        \else           \tabu@arith       %              or 2 (outer in mode 4)
+        \fi
+        \count@=%
+            \ifcase\tabu@nested     \thr@@  % outer goes into mode 3
+            \else\iftabu@measuring  \tw@    % outer is in mode 4
+            \else                   \@ne    % outer is in mode 3
+            \fi\fi
+        \edef\tabu@bufferX{\endgroup
+                           \tabucolX        \the\tabucolX
+                           \tabu@target     \the\tabu@target}%
+    \fi
+    \expandafter \tabu@bufferX \expandafter
+                                    \count@ \the\count@  \tabu@strategy
+}% \tabu@endtrial
+\def\tabu@err{\errmessage{(tabu) Internal impossible error! (\count@=\the\count@)}}
+%% The algorithms: compute the widths / stop or go on ---------------
+\def\tabu@arithnegcoef {%
+    \@tempdima \z@ \dimen@ \z@ \let\tabu@ \tabu@arith@negcoef \tabu@Xcoefs
+}% \tabu@arithnegcoef
+\def\tabu@arith@negcoef #1#2{%
+    \ifdim #2\p@>\z@    \advance\dimen@     #2\p@       % saturated by definition
+                        \advance\@tempdima  #2\tabucolX
+    \else
+        \ifdim -#2\tabucolX <\tabu@wd{#1}% c_i X < natural width <= \tabu@target-> saturated
+                        \advance\dimen@     -#2\p@
+                        \advance\@tempdima  -#2\tabucolX
+        \else
+                        \advance\@tempdima \tabu@wd{#1}% natural width <= c_i X => neutralised
+                        \ifdim \tabu@wd{#1}<\tabu@target \else % neutralised
+                        \advance\dimen@     -#2\p@ % saturated (natural width = tabu@target)
+                        \fi
+        \fi
+    \fi
+}% \tabu@arith@negcoef
+\def\tabu@givespace #1#2{% here \tabu@DELTA < \z@
+    \ifdim \@tempdima=\z@
+        \tabu@wddef{#1}{\the\dimexpr -\tabu@DELTA*\p@/\tabu@Xsum}%
+    \else
+        \tabu@wddef{#1}{\the\dimexpr \tabu@hsize{#1}{#2}
+                    *(\p@ -\tabu@DELTA*\p@/\@tempdima)/\p@\relax}%
+    \fi
+}% \tabu@givespace
+\def\tabu@arith {\advance\tabu@cnt \@ne
+    \ifnum \tabu@cnt=\@ne \tabu@message{\tabu@titles}\fi
+    \tabu@arithnegcoef
+    \@tempdimb \dimexpr \wd\tabu@box -\@tempdima \relax % <incompressible material>
+    \tabu@DELTA = \dimexpr \wd\tabu@box - \tabu@target \relax
+    \tabu@message{\tabu@message@arith}%
+    \ifdim \tabu@DELTA <\tabu@hfuzz
+        \ifdim \tabu@DELTA<\z@          % wd (tabu)<\tabu@target ?
+            \let\tabu@ \tabu@givespace \tabu@Xcoefs
+            \advance\@tempdima \@tempdimb \advance\@tempdima -\tabu@DELTA % for message
+        \else   % already converged: nothing to do but nearly impossible...
+        \fi
+        \tabucolX \maxdimen
+        \tabu@measuringfalse
+    \else                               % need for narrower X columns
+        \tabucolX =\dimexpr (\@tempdima -\tabu@DELTA) *\p@/\tabu@Xsum \relax
+        \tabu@measuringtrue
+        \@whilesw \iftabu@measuring\fi {%
+            \advance\tabu@cnt \@ne
+            \tabu@arithnegcoef
+            \tabu@DELTA =\dimexpr \@tempdima+\@tempdimb -\tabu@target \relax % always < 0 here
+            \tabu@message{\tabu@header
+                \tabu@msgalign \tabucolX { }{ }{ }{ }{ }\@@
+                \tabu@msgalign \@tempdima+\@tempdimb { }{ }{ }{ }{ }\@@
+                \tabu@msgalign \tabu@target { }{ }{ }{ }{ }\@@
+                \tabu@msgalign@PT \dimen@ { }{}{}{}{}{}{}\@@
+                \ifdim -\tabu@DELTA<\tabu@hfuzz \tabu@spaces target ok\else
+                \tabu@msgalign \dimexpr -\tabu@DELTA *\p@/\dimen@ {}{}{}{}{}\@@
+                \fi}%
+            \ifdim -\tabu@DELTA<\tabu@hfuzz
+                \advance\@tempdima \@tempdimb % for message
+                \tabu@measuringfalse
+            \else
+                \advance\tabucolX \dimexpr -\tabu@DELTA *\p@/\dimen@ \relax
+            \fi
+        }%
+    \fi
+    \tabu@message{\tabu@message@reached}%
+    \edef\tabu@bufferX{\endgroup \tabu@cnt    \the\tabu@cnt
+                                 \tabucolX    \the\tabucolX
+                                 \tabu@target \the\tabu@target}%
+}% \tabu@arith
+\def\tabu@spreadarith {%
+    \dimen@ \z@ \@tempdima \tabu@naturalXmax \let\tabu@ \tabu@spread@arith \tabu@Xcoefs
+    \edef\tabu@naturalXmin {\the\dimexpr\tabu@naturalXmin*\dimen@/\p@}%
+    \@tempdimc =\dimexpr \wd\tabu@box -\tabu@naturalXmax+\tabu@naturalXmin \relax
+    \iftabu@measuring
+        \tabu@target =\dimexpr \@tempdimc+\tabu@spreadtarget \relax
+        \edef\tabu@bufferX{\endgroup \tabucolX \the\tabucolX \tabu@target\the\tabu@target}%
+    \else
+        \tabu@message{\tabu@message@spreadarith}%
+        \ifdim \dimexpr \@tempdimc+\tabu@spreadtarget >\tabu@target
+            \tabu@message{(tabu) spread
+                \ifdim \@tempdimc>\tabu@target useless here: default target used%
+                \else too large: reduced to fit default target\fi.}%
+        \else
+            \tabu@target =\dimexpr \@tempdimc+\tabu@spreadtarget \relax
+            \tabu@message{(tabu) spread: New target set to \the\tabu@target^^J}%
+        \fi
+        \begingroup \let\tabu@wddef \@gobbletwo
+            \@tempdimb \@tempdima
+            \tabucolX@init
+            \tabu@arithnegcoef
+            \wd\tabu@box =\dimexpr \wd\tabu@box +\@tempdima-\@tempdimb \relax
+        \expandafter\endgroup \expandafter\tabucolX \the\tabucolX
+        \tabu@arith
+    \fi
+}% \tabu@spreadarith
+\def\tabu@spread@arith #1#2{%
+    \ifdim #2\p@>\z@ \advance\dimen@ #2\p@
+    \else            \advance\@tempdima \tabu@wd{#1}\relax
+    \fi
+}% \tabu@spread@arith
+%% Reporting in the .log file ---------------------------------------
+\def\tabu@message@defaulttarget{%
+    \ifnum\tabu@nested=\z@^^J(tabu) Default target:
+    \ifx\tabudefaulttarget\linewidth    \string\linewidth
+        \ifdim \tabu@thetarget=\linewidth \else
+            -\the\dimexpr\linewidth-\tabu@thetarget\fi  =
+    \else\ifx\tabudefaulttarget\linegoal\string\linegoal=
+    \fi\fi
+    \else (tabu) Default target (nested): \fi
+    \the\tabu@target \on@line
+    \ifnum\tabu@nested=\z@ , page \the\c@page\fi}
+\def\tabu@message@target {^^J(tabu) Target specified:
+   \the\tabu@target \on@line, page \the\c@page}
+\def\tabu@message@arith {\tabu@header
+    \tabu@msgalign \tabucolX { }{ }{ }{ }{ }\@@
+    \tabu@msgalign \wd\tabu@box { }{ }{ }{ }{ }\@@
+    \tabu@msgalign \tabu@target { }{ }{ }{ }{ }\@@
+    \tabu@msgalign@PT \dimen@ { }{}{}{}{}{}{}\@@
+    \ifdim \tabu@DELTA<\tabu@hfuzz giving space\else
+    \tabu@msgalign \dimexpr (\@tempdima-\tabu@DELTA) *\p@/\tabu@Xsum -\tabucolX {}{}{}{}{}\@@
+    \fi
+}% \tabu@message@arith
+\def\tabu@message@spreadarith {\tabu@spreadheader
+   \tabu@msgalign \tabu@spreadtarget { }{ }{ }{ }{}\@@
+   \tabu@msgalign \wd\tabu@box { }{ }{ }{ }{}\@@
+   \tabu@msgalign -\tabu@naturalXmax { }{}{}{}{}\@@
+   \tabu@msgalign \tabu@naturalXmin { }{ }{ }{ }{}\@@
+   \tabu@msgalign \ifdim \dimexpr\@tempdimc>\tabu@target \tabu@target
+                  \else  \@tempdimc+\tabu@spreadtarget \fi
+                  {}{}{}{}{}\@@}
+\def\tabu@message@negcoef #1#2{
+    \tabu@spaces\tabu@spaces\space * #1. X[\rem@pt#2]:
+    \space width = \tabu@wd {#1}
+        \expandafter\string\csname tabu@\the\tabu@nested.W\number#1\endcsname
+    \ifdim -\tabu@pt#2\tabucolX<\tabu@target
+    < \number-\rem@pt#2 X
+    = \the\dimexpr -\tabu@pt#2\tabucolX \relax
+    \else
+    <= \the\tabu@target\space < \number-\rem@pt#2 X\fi}
+\def\tabu@message@reached{\tabu@header
+     ******* Reached Target:
+            hfuzz = \tabu@hfuzz\on@line\space *******}
+\def\tabu@message@etime{\edef\tabu@stoptime{\the\pdfelapsedtime}%
+    \tabu@message{(tabu)\tabu@spaces Time elapsed during measure:
+    \the\numexpr(\tabu@stoptime-\tabu@starttime-32767)/65536\relax sec
+    \the\numexpr\numexpr(\tabu@stoptime-\tabu@starttime)
+    -\numexpr(\tabu@stoptime-\tabu@starttime-32767)/65536\relax*65536\relax
+    *1000/65536\relax ms \tabu@spaces(\the\tabu@cnt\space
+                                        cycle\ifnum\tabu@cnt>\@ne s\fi)^^J^^J}}
+\def\tabu@message@verticalsp {%
+    \ifdim \@tempdima>\tabu@ht
+        \ifdim \@tempdimb>\tabu@dp
+        \expandafter\expandafter\expandafter\string\tabu@ht =
+            \tabu@msgalign \@tempdima { }{ }{ }{ }{ }\@@
+        \expandafter\expandafter\expandafter\string\tabu@dp =
+            \tabu@msgalign \@tempdimb { }{ }{ }{ }{ }\@@^^J%
+        \else
+        \expandafter\expandafter\expandafter\string\tabu@ht =
+            \tabu@msgalign \@tempdima { }{ }{ }{ }{ }\@@^^J%
+        \fi
+    \else\ifdim \@tempdimb>\tabu@dp
+        \tabu@spaces\tabu@spaces\tabu@spaces
+        \expandafter\expandafter\expandafter\string\tabu@dp =
+            \tabu@msgalign \@tempdimb { }{ }{ }{ }{ }\@@^^J\fi
+    \fi
+}% \tabu@message@verticalsp
+\edef\tabu@spaces{\@spaces}
+\def\tabu@strippt{\expandafter\tabu@pt\the}
+{\@makeother\P \@makeother\T\lowercase{\gdef\tabu@pt #1PT{#1}}}
+\def\tabu@msgalign{\expandafter\tabu@msg@align\the\dimexpr}
+\def\tabu@msgalign@PT{\expandafter\tabu@msg@align\romannumeral-`\0\tabu@strippt}
+\def\do #1{%
+    \def\tabu@msg@align##1.##2##3##4##5##6##7##8##9\@@{%
+    \ifnum##1<10 #1 #1\else
+    \ifnum##1<100 #1 \else
+    \ifnum##1<\@m #1\fi\fi\fi
+    ##1.##2##3##4##5##6##7##8#1}%
+    \def\tabu@header{(tabu) \ifnum\tabu@cnt<10 #1\fi\the\tabu@cnt) }%
+    \def\tabu@titles{\ifnum \tabu@nested=\z@
+      (tabu) Try#1 #1 tabu X #1 #1 #1tabu Width #1 #1 Target
+                  #1 #1 #1 Coefs #1 #1 #1 Update^^J\fi}%
+    \def\tabu@spreadheader{%
+      (tabu) Try#1 #1 Spread #1 #1 tabu Width #1 #1 #1 Nat. X #1 #1 #1 #1Nat. Min.
+                                                      #1 New Target^^J%
+      (tabu) sprd}
+    \def\tabu@message@save {\begingroup
+        \def\x ####1{\tabu@msg@align ####1{ }{ }{ }{ }{}\@@}
+        \def\z ####1{\expandafter\x\expandafter{\romannumeral-`\0\tabu@strippt
+                                                     \dimexpr####1\p@{ }{ }}}%
+        \let\color \relax \def\tabu@rulesstyle ####1####2{\detokenize{####1}}%
+        \let\CT@arc@ \relax \let\@preamble \@gobble
+        \let\tabu@savedpream  \@firstofone
+        \let\tabu@savedparams \@firstofone
+        \def\tabu@target ####1\relax   {(tabu) target #1 #1 #1 #1 #1 = \x{####1}^^J}%
+        \def\tabucolX ####1\relax      {(tabu) X columns width#1 = \x{####1}^^J}%
+        \def\tabu@nbcols ####1\relax   {(tabu) Number of columns: \z{####1}^^J}%
+        \def\tabu@aligndefault    ####1{(tabu) Default alignment: #1 #1 ####1^^J}%
+        \def\col@sep ####1\relax       {(tabu) column sep #1 #1 #1 = \x{####1}^^J}%
+        \def\arrayrulewidth ####1\relax{(tabu) arrayrulewidth #1 = \x{####1}}%
+        \def\doublerulesep ####1\relax { doublerulesep = \x{####1}^^J}%
+        \def\extratabsurround####1\relax{(tabu) extratabsurround = \x{####1}^^J}%
+        \def\extrarowheight ####1\relax{(tabu) extrarowheight #1 = \x{####1}}%
+        \def\extrarowdepth ####1\relax {extrarowdepth = \x{####1}^^J}%
+        \def\abovetabulinesep####1\relax{(tabu) abovetabulinesep=\x{####1} }%
+        \def\belowtabulinesep####1\relax{ belowtabulinesep=\x{####1}^^J}%
+        \def\arraystretch         ####1{(tabu) arraystretch #1 #1 = \z{####1}^^J}%
+        \def\minrowclearance####1\relax{(tabu) minrowclearance #1 = \x{####1}^^J}%
+        \def\tabu@arc@L           ####1{(tabu) taburulecolor #1 #1 = ####1^^J}%
+        \def\tabu@drsc@L          ####1{(tabu) tabudoublerulecolor=  ####1^^J}%
+        \def\tabu@evr@L           ####1{(tabu) everyrow #1 #1 #1 #1 = \detokenize{####1}^^J}%
+        \def\tabu@ls@L            ####1{(tabu) line style = \detokenize{####1}^^J}%
+        \def\NC@find ####1\@nil{(tabu) tabu preamble#1 #1 = \detokenize{####1}^^J}%
+        \def\tabu@wddef####1####2{(tabu) Natural width ####1 = \x{####2}^^J}%
+        \let\edef \@gobbletwo \let\def \@empty \let\let \@gobbletwo
+        \tabu@message{%
+         (tabu) \string\savetabu{\tabu@temp}: \on@line^^J%
+         \tabu@usetabu \@nil^^J}%
+        \endgroup}
+}\do{ }
+%% Measuring the natural width (varwidth) - store the results -------
+\def\tabu@startpboxmeasure #1{\bgroup   % entering \vtop
+    \edef\tabu@temp{\expandafter\@secondoftwo \ifx\tabu@hsize #1\else\relax\fi}%
+    \ifodd 1\ifx \tabu@temp\@empty 0 \else      % starts with \tabu@hsize ?
+            \iftabu@spread           \else      % if spread -> measure
+            \ifdim \tabu@temp\p@>\z@ 0 \fi\fi\fi% if coef>0 -> do not measure
+        \let\@startpbox \tabu@startpboxORI      % restore immediately (nesting)
+        \tabu@measuringtrue                     % for the quick option...
+        \tabu@Xcol =\expandafter\@firstoftwo\ifx\tabu@hsize #1\fi
+        \ifdim \tabu@temp\p@>\z@ \ifdim \tabu@temp\tabucolX<\tabu@target
+                                        \tabu@target=\tabu@temp\tabucolX \fi\fi
+        \setbox\tabu@box  \hbox \bgroup
+            \begin{varwidth}\tabu@target
+                \let\FV@ListProcessLine \tabu@FV@ListProcessLine  % \hbox to natural width...
+                \narrowragged \arraybackslash \parfillskip \@flushglue
+                \ifdefined\pdfadjustspacing \pdfadjustspacing\z@ \fi
+                \bgroup \aftergroup\tabu@endpboxmeasure
+                \ifdefined \cellspacetoplimit \tabu@cellspacepatch \fi
+    \else \expandafter\@gobble
+                            \tabu@startpboxquick{#1}% \@gobble \bgroup
+    \fi
+}% \tabu@startpboxmeasure
+\def\tabu@cellspacepatch{\def\bcolumn##1\@nil{}\let\ecolumn\@empty
+                                          \bgroup\color@begingroup}
+\def\tabu@endpboxmeasure {%
+    \@finalstrut \@arstrutbox
+                    \end{varwidth}\egroup    % <got my \tabu@box>
+    \ifdim \tabu@temp\p@ <\z@   % neg coef
+        \ifdim \tabu@wd\tabu@Xcol <\wd\tabu@box
+            \tabu@wddef\tabu@Xcol {\the\wd\tabu@box}%
+            \tabu@debug{\tabu@message@endpboxmeasure}%
+        \fi
+    \else                       % spread coef>0
+        \global\advance \tabu@naturalX \wd\tabu@box
+        \@tempdima =\dimexpr \wd\tabu@box *\p@/\dimexpr \tabu@temp\p@\relax \relax
+        \ifdim \tabu@naturalXmax <\tabu@naturalX
+            \xdef\tabu@naturalXmax {\the\tabu@naturalX}\fi
+        \ifdim \tabu@naturalXmin <\@tempdima
+            \xdef\tabu@naturalXmin {\the\@tempdima}\fi
+    \fi
+   \box\tabu@box \egroup % end of \vtop (measure) restore \tabu@target
+}% \tabu@endpboxmeasure
+\def\tabu@wddef #1{\expandafter\xdef
+                   \csname tabu@\the\tabu@nested.W\number#1\endcsname}
+\def\tabu@wd    #1{\csname tabu@\the\tabu@nested.W\number#1\endcsname}
+\def\tabu@message@endpboxmeasure{\tabu@spaces\tabu@spaces<-> % <-> save natural wd
+    \the\tabu@Xcol. X[\tabu@temp]:
+    target = \the\tabucolX \space
+    \expandafter\expandafter\expandafter\string\tabu@wd\tabu@Xcol
+    =\tabu@wd\tabu@Xcol
+}% \tabu@message@endpboxmeasure
+\def\tabu@startpboxquick {\bgroup
+    \let\@startpbox \tabu@startpboxORI  % restore immediately
+    \let\tabu \tabu@quick               % \begin is expanded before...
+    \expandafter\@gobble \@startpbox    % gobbles \bgroup
+}% \tabu@startpboxquick
+\def\tabu@quick {\begingroup \iffalse{\fi \ifnum0=`}\fi
+    \toks@{}\def\tabu@stack{b}\tabu@collectbody \tabu@endquick
+}% \tabu@quick
+\def\tabu@endquick {%
+    \ifodd 1\ifx\tabu@end@envir\tabu@endtabu  \else
+            \ifx\tabu@end@envir\tabu@endtabus \else 0\fi\fi\relax
+            \endgroup
+    \else   \let\endtabu \relax
+            \tabu@end@envir
+    \fi
+}% \tabu@quick
+\def\tabu@endtabu   {\end{tabu}}
+\def\tabu@endtabus  {\end{tabu*}}
+%% Measuring the heights and depths - store the results -------------
+\def\tabu@verticalmeasure{\everypar{}%
+    \ifnum \currentgrouptype>12         % 14=semi-simple, 15=math shift group
+        \setbox\tabu@box =\hbox\bgroup
+            \let\tabu@verticalspacing \tabu@verticalsp@lcr
+            \d@llarbegin                % after \hbox ...
+    \else
+        \edef\tabu@temp{\ifnum\currentgrouptype=5\vtop
+                        \else\ifnum\currentgrouptype=12\vcenter
+                        \else\vbox\fi\fi}%
+        \setbox\tabu@box \hbox\bgroup$\tabu@temp \bgroup
+            \let\tabu@verticalspacing \tabu@verticalsp@pmb
+    \fi
+}% \tabu@verticalmeasure
+\def\tabu@verticalsp@lcr{%
+    \d@llarend \egroup       % <got my \tabu@box>
+    \@tempdima \dimexpr \ht\tabu@box+\abovetabulinesep
+    \@tempdimb \dimexpr \dp\tabu@box+\belowtabulinesep \relax
+        \ifdim\tabustrutrule>\z@ \tabu@debug{\tabu@message@verticalsp}\fi
+    \ifdim \tabu@ht<\@tempdima    \tabu@htdef{\the\@tempdima}\fi
+    \ifdim \tabu@dp<\@tempdimb    \tabu@dpdef{\the\@tempdimb}\fi
+    \noindent\vrule height\@tempdima depth\@tempdimb
+}% \tabu@verticalsp@lcr
+\def\tabu@verticalsp@pmb{% inserts struts as needed
+    \par \expandafter\egroup
+            \expandafter$\expandafter
+                    \egroup \expandafter
+                            \@tempdimc \the\prevdepth
+    \@tempdima \dimexpr \ht\tabu@box+\abovetabulinesep
+    \@tempdimb \dimexpr \dp\tabu@box+\belowtabulinesep \relax
+        \ifdim\tabustrutrule>\z@ \tabu@debug{\tabu@message@verticalsp}\fi
+    \ifdim \tabu@ht<\@tempdima    \tabu@htdef{\the\@tempdima}\fi
+    \ifdim \tabu@dp<\@tempdimb    \tabu@dpdef{\the\@tempdimb}\fi
+    \let\@finalstrut \@gobble
+    \hrule height\@tempdima depth\@tempdimb width\hsize
+%%    \box\tabu@box
+}% \tabu@verticalsp@pmb
+
+\def\tabu@verticalinit{%
+    \ifnum \c@taburow=\z@ \tabu@rearstrut \fi       % after \tabu@reset !
+    \advance\c@taburow \@ne
+    \tabu@htdef{\the\ht\@arstrutbox}\tabu@dpdef{\the\dp\@arstrutbox}%
+    \advance\c@taburow \m@ne
+}% \tabu@verticalinit
+\def\tabu@htdef {\expandafter\xdef \csname tabu@\the\tabu@nested.H\the\c@taburow\endcsname}
+\def\tabu@ht                      {\csname tabu@\the\tabu@nested.H\the\c@taburow\endcsname}
+\def\tabu@dpdef {\expandafter\xdef \csname tabu@\the\tabu@nested.D\the\c@taburow\endcsname}
+\def\tabu@dp                      {\csname tabu@\the\tabu@nested.D\the\c@taburow\endcsname}
+\def\tabu@verticaldynamicadjustment {%
+    \advance\c@taburow \@ne
+        \extrarowheight \dimexpr\tabu@ht - \ht\strutbox
+        \extrarowdepth  \dimexpr\tabu@dp - \dp\strutbox
+        \let\arraystretch \@empty
+    \advance\c@taburow \m@ne
+}% \tabu@verticaldynamicadjustment
+\def\tabuphantomline{\crcr \noalign{%
+    {\globaldefs \@ne
+        \setbox\@arstrutbox     \box\voidb@x
+        \let\tabu@@celllalign   \tabu@celllalign
+        \let\tabu@@cellralign   \tabu@cellralign
+        \let\tabu@@cellleft     \tabu@cellleft
+        \let\tabu@@cellright    \tabu@cellright
+        \let\tabu@@thevline     \tabu@thevline
+        \let\tabu@celllalign    \@empty
+        \let\tabu@cellralign    \@empty
+        \let\tabu@cellright     \@empty
+        \let\tabu@cellleft      \@empty
+        \let\tabu@thevline      \relax}%
+    \edef\tabu@temp{\tabu@multispan \tabu@nbcols{\noindent &}}%
+    \toks@\expandafter{\tabu@temp \noindent\tabu@everyrowfalse \cr
+        \noalign{\tabu@rearstrut
+            {\globaldefs\@ne
+                \let\tabu@celllalign \tabu@@celllalign
+                \let\tabu@cellralign \tabu@@cellralign
+                \let\tabu@cellleft   \tabu@@cellleft
+                \let\tabu@cellright  \tabu@@cellright
+                \let\tabu@thevline   \tabu@@thevline}}}%
+    \expandafter}\the\toks@
+}% \tabuphantomline
+%% \firsthline and \lasthline corrections ---------------------------
+\def\tabu@firstline {\tabu@hlineAZ  \tabu@firsthlinecorrection     {}}
+\def\tabu@firsthline{\tabu@hlineAZ  \tabu@firsthlinecorrection \hline}
+\def\tabu@lastline  {\tabu@hlineAZ  \tabu@lasthlinecorrection      {}}
+\def\tabu@lasthline {\tabu@hlineAZ  \tabu@lasthlinecorrection  \hline}
+\def\tabu@hline {% replaces \hline if no colortbl (see \AtBeginDocument)
+    \noalign{\ifnum0=`}\fi
+    {\CT@arc@\hrule height\arrayrulewidth}%
+    \futurelet \tabu@temp \tabu@xhline
+}% \tabu@hline
+\def\tabu@xhline{%
+    \ifx \tabu@temp \hline
+        {\ifx \CT@drsc@\relax \vskip
+         \else\ifx \CT@drsc@\@empty \vskip
+         \else \CT@drsc@\hrule height
+         \fi\fi
+         \doublerulesep}%
+    \fi
+    \ifnum0=`{\fi}%
+}% \tabu@xhline
+\def\tabu@hlineAZ #1#2{\noalign{\ifnum0=`}\fi \dimen@ \z@ \count@ \z@
+    \toks@{}\def\tabu@hlinecorrection{#1}\def\tabu@temp{#2}%
+    \tabu@hlineAZsurround
+}% \tabu@hlineAZ
+\newcommand*\tabu@hlineAZsurround[1][\extratabsurround]{%
+    \extratabsurround #1\let\tabucline \tabucline@scan
+    \let\hline     \tabu@hlinescan \let\firsthline \hline
+    \let\cline     \tabu@clinescan \let\lasthline  \hline
+    \expandafter \futurelet \expandafter \tabu@temp
+                \expandafter \tabu@nexthlineAZ \tabu@temp
+}% \tabu@hlineAZsurround
+\def\tabu@hlinescan   {\tabu@thick \arrayrulewidth \tabu@xhlineAZ \hline}
+\def\tabu@clinescan #1{\tabu@thick \arrayrulewidth \tabu@xhlineAZ {\cline{#1}}}
+\def\tabucline@scan{\@testopt \tabucline@sc@n {}}
+\def\tabucline@sc@n #1[#2]{\tabu@xhlineAZ {\tabucline[{#1}]{#2}}}
+\def\tabu@nexthlineAZ{%
+    \ifx \tabu@temp\hline \else
+    \ifx \tabu@temp\cline \else
+    \ifx \tabu@temp\tabucline \else
+         \tabu@hlinecorrection
+    \fi\fi\fi
+}% \tabu@nexthlineAZ
+\def\tabu@xhlineAZ #1{%
+    \toks@\expandafter{\the\toks@ #1}%
+    \@tempdimc \tabu@thick                  % The last line width
+    \ifcase\count@ \@tempdimb \tabu@thick   % The first line width
+    \else \advance\dimen@ \dimexpr \tabu@thick+\doublerulesep \relax
+    \fi
+    \advance\count@ \@ne    \futurelet \tabu@temp \tabu@nexthlineAZ
+}% \tabu@xhlineAZ
+\def\tabu@firsthlinecorrection{% \count@ = number of \hline -1
+    \@tempdima \dimexpr \ht\@arstrutbox+\dimen@
+    \edef\firsthline{%      <local in \noalign>
+        \omit \hbox to\z@{\hss{\noexpand\tabu@DBG{yellow}\vrule
+                    height \the\dimexpr\@tempdima+\extratabsurround
+                    depth  \dp\@arstrutbox
+                    width  \tabustrutrule}\hss}\cr
+        \noalign{\vskip -\the\dimexpr   \@tempdima+\@tempdimb
+                                        +\dp\@arstrutbox \relax}%
+        \the\toks@
+   }\ifnum0=`{\fi
+            \expandafter}\firsthline % we are then !
+}% \tabu@firsthlinecorrection
+\def\tabu@lasthlinecorrection{%
+    \@tempdima \dimexpr  \dp\@arstrutbox+\dimen@+\@tempdimb+\@tempdimc
+    \edef\lasthline{%   <local in \noalign>
+        \the\toks@
+        \noalign{\vskip -\the\dimexpr\dimen@+\@tempdimb+\dp\@arstrutbox}%
+        \omit \hbox to\z@{\hss{\noexpand\tabu@DBG{yellow}\vrule
+                    depth \the\dimexpr \dp\@arstrutbox+\@tempdimb+\dimen@
+                                       +\extratabsurround-\@tempdimc
+                    height \z@
+                    width \tabustrutrule}\hss}\cr
+    }\ifnum0=`{\fi
+            \expandafter}\lasthline % we are then !
+}% \tabu@lasthlinecorrection
+\def\tabu@LT@@hline{%
+    \ifx\LT@next\hline
+        \global\let\LT@next \@gobble
+        \ifx \CT@drsc@\relax
+            \gdef\CT@LT@sep{%
+                \noalign{\penalty-\@medpenalty\vskip\doublerulesep}}%
+        \else
+            \gdef\CT@LT@sep{%
+                \multispan\LT@cols{%
+                \CT@drsc@\leaders\hrule\@height\doublerulesep\hfill}\cr}%
+        \fi
+    \else
+        \global\let\LT@next\empty
+        \gdef\CT@LT@sep{%
+            \noalign{\penalty-\@lowpenalty\vskip-\arrayrulewidth}}%
+    \fi
+    \ifnum0=`{\fi}%
+    \multispan\LT@cols
+        {\CT@arc@\leaders\hrule\@height\arrayrulewidth\hfill}\cr
+    \CT@LT@sep
+    \multispan\LT@cols
+        {\CT@arc@\leaders\hrule\@height\arrayrulewidth\hfill}\cr
+    \noalign{\penalty\@M}%
+    \LT@next
+}% \tabu@LT@@hline
+%% Horizontal lines : \tabucline ------------------------------------
+\let\tabu@start \@tempcnta
+\let\tabu@stop  \@tempcntb
+\newcommand*\tabucline{\noalign{\ifnum0=`}\fi \tabu@cline}
+\newcommand*\tabu@cline[2][]{\tabu@startstop{#2}%
+   \ifnum \tabu@stop<\z@   \toks@{}%
+   \else \tabu@clinearg{#1}\tabu@thestyle
+        \edef\tabucline{\toks@{%
+            \ifnum \tabu@start>\z@ \omit
+                  \tabu@multispan\tabu@start {\span\omit}&\fi
+            \omit \tabu@multispan\tabu@stop {\span\omit}%
+                                        \tabu@thehline\cr
+        }}\tabucline
+        \tabu@tracinglines{(tabu:tabucline) Style: #1^^J\the\toks@^^J^^J}%
+    \fi
+    \futurelet \tabu@temp \tabu@xcline
+}% \tabu@cline
+\def\tabu@clinearg #1{%
+    \ifx\\#1\\\let\tabu@thestyle \tabu@ls@
+    \else \@defaultunits \expandafter\let\expandafter\@tempa
+                                    \romannumeral-`\0#1\relax \@nnil
+        \ifx \hbox\@tempa           \tabu@clinebox{#1}%
+        \else\ifx \box\@tempa       \tabu@clinebox{#1}%
+        \else\ifx \vbox\@tempa      \tabu@clinebox{#1}%
+        \else\ifx \vtop\@tempa      \tabu@clinebox{#1}%
+        \else\ifx \copy\@tempa      \tabu@clinebox{#1}%
+        \else\ifx \leaders\@tempa   \tabu@clineleads{#1}%
+        \else\ifx \cleaders\@tempa  \tabu@clineleads{#1}%
+        \else\ifx \xleaders\@tempa  \tabu@clineleads{#1}%
+        \else\tabu@getline {#1}%
+        \fi\fi\fi\fi\fi\fi\fi\fi
+    \fi
+}% \tabu@clinearg
+\def\tabu@clinebox #1{\tabu@clineleads{\xleaders#1\hss}}
+\def\tabu@clineleads #1{%
+    \let\tabu@thestyle \relax \let\tabu@leaders \@undefined
+    \gdef\tabu@thehrule{#1}}
+\def\tabu@thehline{\begingroup
+    \ifdefined\tabu@leaders
+            \noexpand\tabu@thehleaders
+    \else   \noexpand\tabu@thehrule
+    \fi            \endgroup
+}% \tabu@thehline
+\def\tabu@xcline{%
+    \ifx \tabu@temp\tabucline
+        \toks@\expandafter{\the\toks@ \noalign
+        {\ifx\CT@drsc@\relax \vskip
+         \else \CT@drsc@\hrule height
+         \fi
+         \doublerulesep}}%
+    \fi
+    \tabu@docline
+}% \tabu@xcline
+\def\tabu@docline {\ifnum0=`{\fi \expandafter}\the\toks@}
+\def\tabu@docline@evr {\xdef\tabu@doclineafter{\the\toks@}%
+              \ifnum0=`{\fi}\aftergroup\tabu@doclineafter}
+\def\tabu@multispan #1#2{%
+    \ifnum\numexpr#1>\@ne #2\expandafter\tabu@multispan
+    \else                   \expandafter\@gobbletwo
+    \fi  {#1-1}{#2}%
+}% \tabu@multispan
+\def\tabu@startstop #1{\tabu@start@stop #1\relax 1-\tabu@nbcols \@nnil}
+\def\tabu@start@stop #1-#2\@nnil{%
+   \@defaultunits   \tabu@start\number 0#1\relax    \@nnil
+   \@defaultunits   \tabu@stop \number 0#2\relax    \@nnil
+   \tabu@stop   \ifnum \tabu@start>\tabu@nbcols     \m@ne
+                \else\ifnum \tabu@stop=\z@          \tabu@nbcols
+                \else\ifnum \tabu@stop>\tabu@nbcols \tabu@nbcols
+                \else                               \tabu@stop
+                \fi\fi\fi
+   \advance\tabu@start \m@ne
+   \ifnum \tabu@start>\z@ \advance\tabu@stop -\tabu@start \fi
+}% \tabu@start@stop
+%% Numbers: siunitx S columns  (and \tabudecimal) -------------------
+\def\tabu@tabudecimal #1{%
+    \def\tabu@decimal{#1}\@temptokena{}%
+    \let\tabu@getdecimal@ \tabu@getdecimal@ignorespaces
+    \tabu@scandecimal
+}% \tabu@tabudecimal
+\def\tabu@scandecimal{\futurelet \tabu@temp \tabu@getdecimal@}
+\def\tabu@skipdecimal#1{#1\tabu@scandecimal}
+\def\tabu@getdecimal@ignorespaces{%
+    \ifcase 0\ifx\tabu@temp\ignorespaces\else
+             \ifx\tabu@temp\@sptoken1\else
+             2\fi\fi\relax
+            \let\tabu@getdecimal@ \tabu@getdecimal
+            \expandafter\tabu@skipdecimal
+    \or     \expandafter\tabu@gobblespace\expandafter\tabu@scandecimal
+    \else   \expandafter\tabu@skipdecimal
+    \fi
+}% \tabu@getdecimal@ignorespaces
+\def\tabu@get@decimal#1{\@temptokena\expandafter{\the\@temptokena #1}%
+                        \tabu@scandecimal}
+\def\do#1{%
+    \def\tabu@get@decimalspace#1{%
+        \@temptokena\expandafter{\the\@temptokena #1}\tabu@scandecimal}%
+}\do{ }
+\let\tabu@@tabudecimal \tabu@tabudecimal
+\def\tabu@getdecimal{%
+   \ifcase    0\ifx 0\tabu@temp\else
+               \ifx 1\tabu@temp\else
+               \ifx 2\tabu@temp\else
+               \ifx 3\tabu@temp\else
+               \ifx 4\tabu@temp\else
+               \ifx 5\tabu@temp\else
+               \ifx 6\tabu@temp\else
+               \ifx 7\tabu@temp\else
+               \ifx 8\tabu@temp\else
+               \ifx 9\tabu@temp\else
+               \ifx .\tabu@temp\else
+               \ifx ,\tabu@temp\else
+               \ifx -\tabu@temp\else
+               \ifx +\tabu@temp\else
+               \ifx e\tabu@temp\else
+               \ifx E\tabu@temp\else
+               \ifx\tabu@cellleft\tabu@temp1\else
+               \ifx\ignorespaces\tabu@temp1\else
+               \ifx\@sptoken\tabu@temp2\else
+            3\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\fi\relax
+       \expandafter\tabu@get@decimal
+   \or \expandafter\tabu@skipdecimal
+   \or \expandafter\tabu@get@decimalspace
+   \else\expandafter\tabu@printdecimal
+   \fi
+}% \tabu@getdecimal
+\def\tabu@printdecimal{%
+    \edef\tabu@temp{\the\@temptokena}%
+    \ifx\tabu@temp\@empty\else
+    \ifx\tabu@temp\space\else
+        \expandafter\tabu@decimal\expandafter{\the\@temptokena}%
+    \fi\fi
+}% \tabu@printdecimal
+%% Verbatim inside X columns ----------------------------------------
+\def\tabu@verbatim{%
+    \let\verb \tabu@verb
+    \let\FV@DefineCheckEnd \tabu@FV@DefineCheckEnd
+}% \tabu@verbatim
+\let\tabu@ltx@verb \verb
+\def\tabu@verb{\@ifstar {\tabu@ltx@verb*} \tabu@ltx@verb}
+\def\tabu@fancyvrb {%
+    \def\tabu@FV@DefineCheckEnd ##1{%
+        \def\tabu@FV@DefineCheckEnd{%
+            ##1% <original definition (if fancyvrb is loaded)>
+            \let\FV@CheckEnd     \tabu@FV@CheckEnd
+            \let\FV@@CheckEnd    \tabu@FV@@CheckEnd
+            \let\FV@@@CheckEnd   \tabu@FV@@@CheckEnd
+            \edef\FV@EndScanning{%
+            \def\noexpand\next{\noexpand\end{\FV@EnvironName}}%
+                \global\let\noexpand\FV@EnvironName\relax
+                \noexpand\next}%
+            \xdef\FV@EnvironName{\detokenize\expandafter{\FV@EnvironName}}}%
+    }\expandafter\tabu@FV@DefineCheckEnd\expandafter{\FV@DefineCheckEnd}
+}% \tabu@fancyvrb
+\def\tabu@FV@CheckEnd  #1{\expandafter\FV@@CheckEnd \detokenize{#1\end{}}\@nil}
+\edef\tabu@FV@@@CheckEnd {\detokenize{\end{}}}
+\begingroup
+\catcode`\[1      \catcode`\]2
+\@makeother\{     \@makeother\}
+   \edef\x[\endgroup
+      \def\noexpand\tabu@FV@@CheckEnd ##1\detokenize[\end{]##2\detokenize[}]##3%
+   ]\x               \@nil{\def\@tempa{#2}\def\@tempb{#3}}
+\def\tabu@FV@ListProcessLine #1{%
+  \hbox {%to \hsize{%
+    \kern\leftmargin
+    \hbox {%to \linewidth{%
+      \FV@LeftListNumber
+      \FV@LeftListFrame
+      \FancyVerbFormatLine{#1}\hss
+%% DG/SR modification begin - Jan. 28, 1998 (for numbers=right add-on)
+%%      \FV@RightListFrame}%
+      \FV@RightListFrame
+      \FV@RightListNumber}%
+%% DG/SR modification end
+    \hss}}
+%% \savetabu --------------------------------------------------------
+\newcommand*\savetabu[1]{\noalign{%
+    \tabu@sanitizearg{#1}\tabu@temp
+    \ifx \tabu@temp\@empty  \tabu@savewarn{}{The tabu will not be saved}\else
+        \@ifundefined{tabu@saved@\tabu@temp}{}{\tabu@savewarn{#1}{Overwriting}}%
+        \ifdefined\tabu@restored \expandafter\let
+            \csname tabu@saved@\tabu@temp \endcsname \tabu@restored
+        \else {\tabu@save}%
+        \fi
+    \fi}%
+}% \savetabu
+\def\tabu@save {%
+    \toks0\expandafter{\tabu@saved@}%
+    \iftabu@negcoef
+        \let\tabu@wddef \relax \let\tabu@ \tabu@savewd \edef\tabu@savewd{\tabu@Xcoefs}%
+        \toks0\expandafter{\the\toks\expandafter0\tabu@savewd}\fi
+    \toks1\expandafter{\tabu@savedpream}%
+    \toks2\expandafter{\tabu@savedpreamble}%
+    \let\@preamble \relax
+    \let\tabu@savedpream \relax \let\tabu@savedparams \relax
+    \edef\tabu@preamble{%
+        \def\noexpand\tabu@aligndefault{\tabu@align}%
+        \def\tabu@savedparams {\noexpand\the\toks0}%
+        \def\tabu@savedpream  {\noexpand\the\toks1}}%
+    \edef\tabu@usetabu{%
+        \def\@preamble {\noexpand\the\toks2}%
+        \tabu@target \the\tabu@target \relax
+        \tabucolX    \the\tabucolX    \relax
+        \tabu@nbcols \the\tabu@nbcols \relax
+        \def\noexpand\tabu@aligndefault{\tabu@align}%
+        \def\tabu@savedparams {\noexpand\the\toks0}%
+        \def\tabu@savedpream  {\noexpand\the\toks1}}%
+    \let\tabu@aligndefault \relax \let\@sharp \relax
+    \edef\@tempa{\noexpand\tabu@s@ved
+                          {\tabu@usetabu}
+                         {\tabu@preamble}
+                            {\the\toks1}}\@tempa
+    \tabu@message@save
+}% \tabu@save
+\long\def\tabu@s@ved #1#2#3{%
+    \def\tabu@usetabu{#1}% <for \tabu@message@save>
+    \expandafter\gdef\csname tabu@saved@\tabu@temp\endcsname ##1{%
+        \ifodd ##1%     \usetabu
+            \tabu@measuringfalse \tabu@spreadfalse  % Just in case...
+            \gdef\tabu@usetabu {%
+                \ifdim \tabu@target>\z@ \tabu@warn@usetabu \fi
+                \global\let\tabu@usetabu \@undefined
+                \def\@halignto {to\tabu@target}%
+                #1%
+                \ifx \tabu@align\tabu@aligndefault@text
+                \ifnum \tabu@nested=\z@
+                       \let\tabu@align \tabu@aligndefault \fi\fi}%
+        \else     %     \preamble
+            \gdef\tabu@preamble {%
+                \global\let\tabu@preamble \@undefined
+                #2%
+                \ifx \tabu@align\tabu@aligndefault@text
+                \ifnum \tabu@nested=\z@
+                       \let\tabu@align \tabu@aligndefault \fi\fi}%
+        \fi
+        #3}%
+}% \tabu@s@ved
+\def\tabu@aligndefault@text {\tabu@aligndefault}%
+\def\tabu@warn@usetabu {\PackageWarning{tabu}
+    {Specifying a target with \string\usetabu\space is useless
+    \MessageBreak The target cannot be changed!}}
+\def\tabu@savewd #1#2{\ifdim #2\p@<\z@ \tabu@wddef{#1}{\tabu@wd{#1}}\fi}
+\def\tabu@savewarn#1#2{\PackageInfo{tabu}
+    {User-name `#1' already used for \string\savetabu
+    \MessageBreak #2}}%
+\def\tabu@saveerr#1{\PackageError{tabu}
+    {User-name `#1' is unknown for \string\usetabu
+    \MessageBreak I cannot restore an unknown preamble!}\@ehd}
+%% \rowfont ---------------------------------------------------------
+\newskip \tabu@cellskip
+\def\tabu@rowfont{\ifdim \baselineskip=\z@\noalign\fi
+                    {\ifnum0=`}\fi    \tabu@row@font}
+\newcommand*\tabu@row@font[2][]{%
+    \ifnum7=\currentgrouptype
+        \global\let\tabu@@cellleft    \tabu@cellleft
+        \global\let\tabu@@cellright   \tabu@cellright
+        \global\let\tabu@@celllalign  \tabu@celllalign
+        \global\let\tabu@@cellralign  \tabu@cellralign
+        \global\let\tabu@@rowfontreset\tabu@rowfontreset
+    \fi
+    \global\let\tabu@rowfontreset \tabu@rowfont@reset
+    \expandafter\gdef\expandafter\tabu@cellleft\expandafter{\tabu@cellleft #2}%
+    \ifcsname tabu@cell@#1\endcsname       % row alignment
+            \csname tabu@cell@#1\endcsname \fi
+    \ifnum0=`{\fi}% end of group / noalign group
+}% \rowfont
+\def\tabu@ifcolorleavevmode #1{\let\color \tabu@leavevmodecolor #1\let\color\tabu@color}%
+\def\tabu@rowfont@reset{%
+    \global\let\tabu@rowfontreset \tabu@@rowfontreset
+    \global\let\tabu@cellleft     \tabu@@cellleft
+    \global\let\tabu@cellright    \tabu@@cellright
+    \global\let\tabu@cellfont     \@empty
+    \global\let\tabu@celllalign   \tabu@@celllalign
+    \global\let\tabu@cellralign   \tabu@@cellralign
+}% \tabu@@rowfontreset
+\let\tabu@rowfontreset \@empty     % overwritten \AtBeginDocument if colortbl
+%% \tabu@prepnext@tok -----------------------------------------------
+\newif \iftabu@cellright
+\def\tabu@prepnext@tok{%
+    \ifnum \count@<\z@   % <first initialisation>
+            \@tempcnta  \@M   % <not initialized by array.sty>
+            \tabu@nbcols\z@
+            \let\tabu@fornoopORI \@fornoop
+            \tabu@cellrightfalse
+    \else
+        \ifcase \numexpr \count@-\@tempcnta \relax % (case 0): prev. token is left
+                \advance \tabu@nbcols \@ne
+                \iftabu@cellright % before-previous token is right and is finished
+                    \tabu@cellrightfalse % <only once>
+                    \tabu@righttok
+                \fi
+                \tabu@lefttok
+        \or                     % (case 1) previous token is right
+                \tabu@cellrighttrue \let\@fornoop \tabu@lastnoop
+        \else % special column: do not change the token
+                \iftabu@cellright    % before-previous token is right
+                    \tabu@cellrightfalse
+                    \tabu@righttok
+                \fi
+        \fi % \ifcase
+    \fi
+    \tabu@prepnext@tokORI
+}% \tabu@prepnext@tok
+\long\def\tabu@lastnoop#1\@@#2#3{\tabu@lastn@@p #2\@nextchar \in@\in@@}
+\def\tabu@lastn@@p #1\@nextchar #2#3\in@@{%
+    \ifx \in@#2\else
+        \let\@fornoop \tabu@fornoopORI
+        \xdef\tabu@mkpreambuffer{\tabu@nbcols\the\tabu@nbcols \tabu@mkpreambuffer}%
+        \toks0\expandafter{\expandafter\tabu@everyrowtrue \the\toks0}%
+        \expandafter\prepnext@tok
+    \fi
+}% \tabu@lastnoop
+\def\tabu@righttok{%
+    \advance \count@ \m@ne
+    \toks\count@\expandafter {\the\toks\count@ \tabu@cellright \tabu@cellralign}%
+    \advance \count@ \@ne
+}% \tabu@righttok
+\def\tabu@lefttok{\toks\count@\expandafter{\expandafter\tabu@celllalign
+                                    \the\toks\count@ \tabu@cellleft}% after because of $
+}% \tabu@lefttok
+%% Neutralisation of glues ------------------------------------------
+\let\tabu@cellleft   \@empty
+\let\tabu@cellright  \@empty
+\tabu@celllalign@def{\tabu@cellleft}%
+\let\tabu@cellralign \@empty
+\def\tabu@cell@align #1#2#3{%
+    \let\tabu@maybesiunitx \toks@ \tabu@celllalign
+    \global \expandafter \tabu@celllalign@def \expandafter {\the\toks@ #1}%
+    \toks@\expandafter{\tabu@cellralign #2}%
+    \xdef\tabu@cellralign{\the\toks@}%
+    \toks@\expandafter{\tabu@cellleft #3}%
+    \xdef\tabu@cellleft{\the\toks@}%
+}% \tabu@cell@align
+\def\tabu@cell@l{% force alignment to left
+   \tabu@cell@align
+      {\tabu@removehfil \raggedright \tabu@cellleft}% left
+      {\tabu@flush1\tabu@ignorehfil}%                 right
+      \raggedright
+}% \tabu@cell@l
+\def\tabu@cell@c{% force alignment to center
+   \tabu@cell@align
+      {\tabu@removehfil \centering \tabu@flush{.5}\tabu@cellleft}
+      {\tabu@flush{.5}\tabu@ignorehfil}
+      \centering
+}% \tabu@cell@c
+\def\tabu@cell@r{% force alignment to right
+   \tabu@cell@align
+      {\tabu@removehfil \raggedleft \tabu@flush1\tabu@cellleft}
+      \tabu@ignorehfil
+      \raggedleft
+}% \tabu@cell@r
+\def\tabu@cell@j{% force justification (for p, m, b columns)
+      \tabu@cell@align
+         {\tabu@justify\tabu@cellleft}
+         {}
+         \tabu@justify
+}% \tabu@cell@j
+\def\tabu@justify{%
+   \leftskip\z@skip \@rightskip\leftskip \rightskip\@rightskip
+   \parfillskip\@flushglue
+}% \tabu@justify
+%% ragged2e settings
+\def\tabu@cell@L{% force alignment to left (ragged2e)
+   \tabu@cell@align
+      {\tabu@removehfil \RaggedRight \tabu@cellleft}
+      {\tabu@flush 1\tabu@ignorehfil}
+      \RaggedRight
+}% \tabu@cell@L
+\def\tabu@cell@C{% force alignment to center (ragged2e)
+   \tabu@cell@align
+      {\tabu@removehfil \Centering \tabu@flush{.5}\tabu@cellleft}
+      {\tabu@flush{.5}\tabu@ignorehfil}
+      \Centering
+}% \tabu@cell@C
+\def\tabu@cell@R{% force alignment to right (ragged2e)
+   \tabu@cell@align
+      {\tabu@removehfil \RaggedLeft \tabu@flush 1\tabu@cellleft}
+      \tabu@ignorehfil
+      \RaggedLeft
+}% \tabu@cell@R
+\def\tabu@cell@J{% force justification (ragged2e)
+   \tabu@cell@align
+      {\justifying \tabu@cellleft}
+      {}
+      \justifying
+}% \tabu@cell@J
+\def\tabu@flush#1{%
+    \iftabu@colortbl      % colortbl uses \hfill rather than \hfil
+        \hskip \ifnum13<\currentgrouptype \stretch{#1}%
+        \else  \ifdim#1pt<\p@ \tabu@cellskip
+        \else  \stretch{#1}
+        \fi\fi \relax
+    \else                % array.sty
+        \ifnum 13<\currentgrouptype
+                \hfil \hskip1sp \relax  \fi
+    \fi
+}% \tabu@flush
+\let\tabu@hfil  \hfil
+\let\tabu@hfill \hfill
+\let\tabu@hskip \hskip
+\def\tabu@removehfil{%
+    \iftabu@colortbl
+        \unkern \tabu@cellskip =\lastskip
+        \ifnum\gluestretchorder\tabu@cellskip =\tw@ \hskip-\tabu@cellskip
+        \else \tabu@cellskip \z@skip
+        \fi
+    \else
+        \ifdim\lastskip=1sp\unskip\fi
+        \ifnum\gluestretchorder\lastskip =\@ne
+            \hfilneg % \hfilneg for array.sty but not for colortbl...
+        \fi
+    \fi
+}% \tabu@removehfil
+\def\tabu@ignorehfil{\aftergroup \tabu@nohfil}
+\def\tabu@nohfil{% \hfil -> do nothing + restore original \hfil
+   \def\hfil{\let\hfil \tabu@hfil}%   local to (alignment template) group
+}% \tabu@nohfil
+\def\tabu@colortblalignments {% if colortbl
+    \def\tabu@nohfil{%
+        \def\hfil  {\let\hfil \tabu@hfil}% local to (alignment template) group
+        \def\hfill {\let\hfill \tabu@hfill}% (colortbl uses \hfill) pfff...
+        \def\hskip ####1\relax{\let\hskip \tabu@hskip}}% local
+}% \tabu@colortblalignments
+%% Taking care of footnotes and hyperfootnotes ----------------------
+\long\def\tabu@footnotetext #1{%
+   \edef\@tempa{\the\tabu@footnotes
+      \noexpand\footnotetext [\the\csname c@\@mpfn\endcsname]}%
+   \global\tabu@footnotes\expandafter{\@tempa {#1}}}%
+\long\def\tabu@xfootnotetext [#1]#2{%
+   \global\tabu@footnotes\expandafter{\the\tabu@footnotes
+                               \footnotetext [{#1}]{#2}}}
+\let\tabu@xfootnote \@xfootnote
+\long\def\tabu@Hy@ftntext{\tabu@Hy@ftntxt {\the \c@footnote }}
+\long\def\tabu@Hy@xfootnote [#1]{%
+   \begingroup
+      \value\@mpfn #1\relax
+      \protected@xdef \@thefnmark  {\thempfn}%
+   \endgroup
+   \@footnotemark \tabu@Hy@ftntxt {#1}%
+}% \tabu@Hy@xfootnote
+\long\def\tabu@Hy@ftntxt #1#2{%
+    \edef\@tempa{%
+        \the\tabu@footnotes
+        \begingroup
+            \value\@mpfn #1\relax
+            \noexpand\protected@xdef\noexpand\@thefnmark {\noexpand\thempfn}%
+            \expandafter \noexpand \expandafter
+                \tabu@Hy@footnotetext \expandafter{\Hy@footnote@currentHref}%
+    }%
+    \global\tabu@footnotes\expandafter{\@tempa {#2}%
+                                         \endgroup}%
+}% \tabu@Hy@ftntxt
+\long\def\tabu@Hy@footnotetext #1#2{%
+    \H@@footnotetext{%
+        \ifHy@nesting
+            \hyper@@anchor {#1}{#2}%
+        \else
+            \Hy@raisedlink{%
+                \hyper@@anchor {#1}{\relax}%
+            }%
+            \def\@currentHref {#1}%
+            \let\@currentlabelname \@empty
+            #2%
+        \fi
+    }%
+}% \tabu@Hy@footnotetext
+%% No need for \arraybackslash ! ------------------------------------
+\def\tabu@latextwoe {%
+\def\tabu@temp##1##2##3{{\toks@\expandafter{##2##3}\xdef##1{\the\toks@}}}
+\tabu@temp \tabu@centering   \centering   \arraybackslash
+\tabu@temp \tabu@raggedleft  \raggedleft  \arraybackslash
+\tabu@temp \tabu@raggedright \raggedright \arraybackslash
+}% \tabu@latextwoe
+\def\tabu@raggedtwoe {%
+\def\tabu@temp ##1##2##3{{\toks@\expandafter{##2##3}\xdef##1{\the\toks@}}}
+\tabu@temp \tabu@Centering   \Centering   \arraybackslash
+\tabu@temp \tabu@RaggedLeft  \RaggedLeft  \arraybackslash
+\tabu@temp \tabu@RaggedRight \RaggedRight \arraybackslash
+\tabu@temp \tabu@justifying  \justifying  \arraybackslash
+}% \tabu@raggedtwoe
+\def\tabu@normalcrbackslash{\let\\\@normalcr}
+\def\tabu@trivlist{\expandafter\def\expandafter\@trivlist\expandafter{%
+                       \expandafter\tabu@normalcrbackslash \@trivlist}}
+%% Utilities: \fbox  \fcolorbox  and \tabudecimal -------------------
+\def\tabu@fbox      {\leavevmode\afterassignment\tabu@beginfbox \setbox\@tempboxa\hbox}
+\def\tabu@beginfbox {\bgroup \kern\fboxsep
+                     \bgroup\aftergroup\tabu@endfbox}
+\def\tabu@endfbox   {\kern\fboxsep\egroup\egroup
+                     \@frameb@x\relax}
+\def\tabu@color@b@x #1#2{\leavevmode \bgroup
+    \def\tabu@docolor@b@x{#1{#2\color@block{\wd\z@}{\ht\z@}{\dp\z@}\box\z@}}%
+    \afterassignment\tabu@begincolor@b@x \setbox\z@ \hbox
+}% \tabu@color@b@x
+\def\tabu@begincolor@b@x {\kern\fboxsep \bgroup
+       \aftergroup\tabu@endcolor@b@x \set@color}
+\def\tabu@endcolor@b@x {\kern\fboxsep \egroup
+    \dimen@\ht\z@ \advance\dimen@ \fboxsep \ht\z@ \dimen@
+    \dimen@\dp\z@ \advance\dimen@ \fboxsep \dp\z@ \dimen@
+    \tabu@docolor@b@x \egroup
+}% \tabu@endcolor@b@x
+%% Corrections (arydshln, delarray, colortbl) -----------------------
+\def\tabu@fix@arrayright {%% \@arrayright is missing from \endarray
+    \iftabu@colortbl
+        \ifdefined\adl@array  % <colortbl + arydshln>
+        \def\tabu@endarray{%
+            \adl@endarray \egroup \adl@arrayrestore \CT@end \egroup %<original>
+            \@arrayright      % <FC>
+            \gdef\@preamble{}}% <FC>
+        \else                 % <colortbl / no arydshln>
+        \def\tabu@endarray{%
+            \crcr \egroup \egroup    %<original>
+            \@arrayright             % <FC>
+            \gdef\@preamble{}\CT@end}%
+        \fi
+    \else
+        \ifdefined\adl@array  % <arydshln / no colortbl>
+        \def\tabu@endarray{%
+            \adl@endarray \egroup \adl@arrayrestore \egroup %<original>
+            \@arrayright      % <FC>
+            \gdef\@preamble{}}% <FC>
+    \else                   % <no arydshln / no colotbl + \@arrayright missing>
+        \PackageWarning{tabu}
+        {\string\@arrayright\space is missing from the
+        \MessageBreak definition of \string\endarray.
+        \MessageBreak Compatibility with delarray.sty is broken.}%
+    \fi\fi
+}% \tabu@fix@arrayright
+\def\tabu@adl@xarraydashrule #1#2#3{%
+     \ifnum\@lastchclass=\adl@class@start\else
+     \ifnum\@lastchclass=\@ne\else
+     \ifnum\@lastchclass=5 \else % <FC> @-arg (class 5) and !-arg (class 1)
+             \adl@leftrulefalse \fi\fi           % must be treated the same
+     \fi
+     \ifadl@zwvrule\else \ifadl@inactive\else
+             \@addtopreamble{\vrule\@width\arrayrulewidth
+                     \@height\z@ \@depth\z@}\fi \fi
+     \ifadl@leftrule
+             \@addtopreamble{\adl@vlineL{\CT@arc@}{\adl@dashgapcolor}%
+                     {\number#1}#3}%
+     \else   \@addtopreamble{\adl@vlineR{\CT@arc@}{\adl@dashgapcolor}%
+                     {\number#2}#3}
+     \fi
+}% \tabu@adl@xarraydashrule
+\def\tabu@adl@act@endpbox {%
+    \unskip \ifhmode \nobreak \fi    \@finalstrut \@arstrutbox
+    \egroup \egroup
+    \adl@colhtdp \box\adl@box \hfil
+}% \tabu@adl@act@endpbox
+\def\tabu@adl@fix {%
+    \let\adl@xarraydashrule \tabu@adl@xarraydashrule % <fix> arydshln
+    \let\adl@act@endpbox    \tabu@adl@act@endpbox    % <fix> arydshln
+    \let\adl@act@@endpbox   \tabu@adl@act@endpbox    % <fix> arydshln
+    \let\@preamerror        \@preamerr               % <fix> arydshln
+}% \tabu@adl@fix
+%% Correction for longtable' \@startbox definition ------------------
+%%    => \everypar is ``missing'' : TeX should be in vertical mode
+\def\tabu@LT@startpbox #1{%
+    \bgroup
+        \let\@footnotetext\LT@p@ftntext
+        \setlength\hsize{#1}%
+        \@arrayparboxrestore
+        \everypar{%
+            \vrule \@height \ht\@arstrutbox \@width \z@
+            \everypar{}}%
+}% \tabu@LT@startpbox
+%% \tracingtabu  and  the package options ------------------
+\DeclareOption{delarray}{\AtEndOfPackage{\RequirePackage{delarray}}}
+\DeclareOption{linegoal}{%
+   \AtEndOfPackage{%
+      \RequirePackage{linegoal}[2010/12/07]%
+      \let\tabudefaulttarget \linegoal% \linegoal is \linewidth if not pdfTeX
+}}
+\DeclareOption{scantokens}{\tabuscantokenstrue}
+\DeclareOption{debugshow}{\AtEndOfPackage{\tracingtabu=\tw@}}
+\def\tracingtabu {\begingroup\@ifnextchar=%
+    {\afterassignment\tabu@tracing\count@}
+    {\afterassignment\tabu@tracing\count@1\relax}}
+\def\tabu@tracing{\expandafter\endgroup
+    \expandafter\tabu@tr@cing \the\count@ \relax
+}% \tabu@tracing
+\def\tabu@tr@cing #1\relax {%
+    \ifnum#1>\thr@@ \let\tabu@tracinglines\message
+    \else           \let\tabu@tracinglines\@gobble
+    \fi
+    \ifnum#1>\tw@   \let\tabu@DBG        \tabu@@DBG
+                    \def\tabu@mkarstrut {\tabu@DBG@arstrut}%
+                    \tabustrutrule      1.5\p@
+    \else           \let\tabu@DBG        \@gobble
+                    \def\tabu@mkarstrut {\tabu@arstrut}%
+                    \tabustrutrule      \z@
+    \fi
+    \ifnum#1>\@ne   \let\tabu@debug      \message
+    \else           \let\tabu@debug      \@gobble
+    \fi
+    \ifnum#1>\z@
+        \let\tabu@message             \message
+        \let\tabu@tracing@save        \tabu@message@save
+        \let\tabu@starttimer          \tabu@pdftimer
+    \else
+        \let\tabu@message             \@gobble
+        \let\tabu@tracing@save        \@gobble
+        \let\tabu@starttimer          \relax
+    \fi
+}% \tabu@tr@cing
+%% Setup \AtBeginDocument
+\AtBeginDocument{\tabu@AtBeginDocument}
+\def\tabu@AtBeginDocument{\let\tabu@AtBeginDocument \@undefined
+    \ifdefined\arrayrulecolor   \tabu@colortbltrue       % <colortbl>
+                                \tabu@colortblalignments % different glues are used
+    \else                       \tabu@colortblfalse \fi
+    \ifdefined\CT@arc@ \else \let\CT@arc@  \relax \fi
+    \ifdefined\CT@drsc@\else \let\CT@drsc@ \relax \fi
+    \let\tabu@arc@L \CT@arc@ \let\tabu@drsc@L \CT@drsc@
+    \ifodd 1\ifcsname siunitx_table_collect_begin:Nn\endcsname   % <siunitx: ok>
+            \expandafter\ifx
+                \csname siunitx_table_collect_begin:Nn\endcsname\relax 0\fi\fi\relax
+            \tabu@siunitxtrue
+    \else   \let\tabu@maybesiunitx   \@firstofone                % <not siunitx: setup>
+            \let\tabu@siunitx        \tabu@nosiunitx
+            \tabu@siunitxfalse
+    \fi
+    \ifdefined\adl@array        % <arydshln>
+    \else     \let\tabu@adl@fix \relax
+              \let\tabu@adl@endtrial \@empty \fi
+    \ifdefined\longtable        % <longtable>
+    \else     \let\longtabu \tabu@nolongtabu \fi
+    \ifdefined\cellspacetoplimit \tabu@warn@cellspace\fi
+    \csname\ifcsname ifHy@hyperfootnotes\endcsname % <hyperfootnotes>
+            ifHy@hyperfootnotes\else iffalse\fi\endcsname
+        \let\tabu@footnotetext \tabu@Hy@ftntext
+        \let\tabu@xfootnote    \tabu@Hy@xfootnote \fi
+    \ifdefined\FV@DefineCheckEnd% <fancyvrb>
+            \tabu@fancyvrb  \fi
+    \ifdefined\color            % <color / xcolor>
+        \let\tabu@color \color
+        \def\tabu@leavevmodecolor ##1{%
+            \def\tabu@leavevmodecolor {\leavevmode ##1}%
+        }\expandafter\tabu@leavevmodecolor\expandafter{\color}%
+    \else
+        \let\tabu@color           \tabu@nocolor
+        \let\tabu@leavevmodecolor \@firstofone \fi
+    \tabu@latextwoe
+    \ifdefined\@raggedtwoe@everyselectfont    % <ragged2e>
+        \tabu@raggedtwoe
+    \else
+        \let\tabu@cell@L \tabu@cell@l
+        \let\tabu@cell@R \tabu@cell@r
+        \let\tabu@cell@C \tabu@cell@c
+        \let\tabu@cell@J \tabu@cell@j   \fi
+    \expandafter\in@ \expandafter\@arrayright \expandafter{\endarray}%
+    \ifin@ \let\tabu@endarray \endarray
+    \else  \tabu@fix@arrayright \fi% <fix for colortbl & arydshln (delarray)>
+    \everyrow{}%
+}% \tabu@AtBeginDocument
+\def\tabu@warn@cellspace{%
+    \PackageWarning{tabu}{%
+                  Package cellspace has some limitations
+    \MessageBreak And redefines some macros of array.sty.
+    \MessageBreak Please use \string\tabulinesep\space to control
+    \MessageBreak vertical spacing of lines inside tabu environment}%
+}% \tabu@warn@cellspace
+%% tabu Package initialisation
+\tabuscantokensfalse
+\let\tabu@arc@G         \relax
+\let\tabu@drsc@G        \relax
+\let\tabu@evr@G         \@empty
+\let\tabu@rc@G          \@empty
+\def\tabu@ls@G          {\tabu@linestyle@}%
+\let\tabu@@rowfontreset \@empty % <init>
+\let\tabu@@celllalign   \@empty
+\let\tabu@@cellralign   \@empty
+\let\tabu@@cellleft     \@empty
+\let\tabu@@cellright    \@empty
+\def\tabu@naturalXmin   {\z@}
+\def\tabu@naturalXmax   {\z@}
+\let\tabu@rowfontreset  \@empty
+\def\tabulineon {4pt}\let\tabulineoff \tabulineon
+\tabu@everyrowtrue
+\ifdefined\pdfelapsedtime                   % <pdfTeX>
+        \def\tabu@pdftimer {\xdef\tabu@starttime{\the\pdfelapsedtime}}%
+\else   \let\tabu@pdftimer \relax \let\tabu@message@etime \relax
+\fi
+\tracingtabu=\z@
+\newtabulinestyle {=\maxdimen}% creates the 'factory' settings \tabu@linestyle@
+\tabulinestyle{}
+\taburowcolors{}
+\let\tabudefaulttarget  \linewidth
+\ProcessOptions*                % \ProcessOptions* is quicker !
+\endinput
+%%
+%% End of file `tabu.sty'.
diff --git a/images/NEWNODE.pdf b/images/NEWNODE.pdf
new file mode 100644
index 00000000..1121429e
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diff --git a/images/Neural Architectural Search.odp b/images/Neural Architectural Search.odp
new file mode 100644
index 00000000..67f24aa5
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diff --git a/images/Neural Architectural Search.pptx b/images/Neural Architectural Search.pptx
new file mode 100644
index 00000000..2e687a8e
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diff --git a/images/arch.png b/images/arch.png
new file mode 100644
index 00000000..78a7bacd
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diff --git a/images/domain.png b/images/domain.png
new file mode 100644
index 00000000..40b5bc95
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diff --git a/images/result_comp.png b/images/result_comp.png
new file mode 100644
index 00000000..f0ed62e9
Binary files /dev/null and b/images/result_comp.png differ
diff --git a/images/result_enarc.png b/images/result_enarc.png
new file mode 100644
index 00000000..a2c6c735
Binary files /dev/null and b/images/result_enarc.png differ
diff --git a/mpi/CMakeLists.txt b/mpi/CMakeLists.txt
index f6cdea4f..78d19639 100644
--- a/mpi/CMakeLists.txt
+++ b/mpi/CMakeLists.txt
@@ -1,5 +1,5 @@
 add_executable(process_sweep_results tracker run_statistics process_sweep_results)
-target_link_libraries(process_sweep_results examm_strategy exact_common exact_time_series exact_word_series pthread)
+target_link_libraries(process_sweep_results examm_strategy exact_common exact_time_series exact_character_series pthread)
 
 find_package(MPI)
 
@@ -12,21 +12,21 @@ if (MPI_FOUND)
     #target_link_libraries(exact_mpi exact_strategy exact_image_tools exact_common ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
 
     add_executable(test_stream_write test_stream_write)
-    target_link_libraries(test_stream_write examm_strategy exact_time_series exact_word_series exact_common ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
+    target_link_libraries(test_stream_write examm_strategy exact_time_series exact_character_series exact_common ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
 
     add_executable(examm_mpi examm_mpi)
-    target_link_libraries(examm_mpi examm_strategy exact_time_series exact_word_series exact_common ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
+    target_link_libraries(examm_mpi examm_strategy exact_time_series exact_character_series exact_common ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
 
     add_executable(examm_mpi_nlp examm_mpi_nlp)
-    target_link_libraries(examm_mpi_nlp examm_strategy exact_time_series exact_word_series exact_common ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
+    target_link_libraries(examm_mpi_nlp examm_strategy exact_time_series exact_character_series exact_common ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
 
     add_executable(examm_mpi_multi examm_mpi_multi)
-    target_link_libraries(examm_mpi_multi examm_strategy exact_time_series exact_word_series exact_common ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
+    target_link_libraries(examm_mpi_multi examm_strategy exact_time_series exact_character_series exact_common ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
 
     set (CMAKE_CXX_COMPILE_FLAGS "${CMAKE_COMPILE_FLAGS} ${MPI_COMPILE_FLAGS}")
     set (CMAKE_CXX_LINK_FLAGS "${CMAKE_CXX_LINK_FLAGS} ${MPI_LINK_FLAGS}")
     include_directories(${MPI_INCLUDE_PATH})
 
     add_executable(rnn_kfold_sweep rnn_kfold_sweep)
-    target_link_libraries(rnn_kfold_sweep examm_strategy exact_common exact_time_series exact_word_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
+    target_link_libraries(rnn_kfold_sweep examm_strategy exact_common exact_time_series exact_character_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
 endif (MPI_FOUND)
diff --git a/mpi/examm_mpi.cxx b/mpi/examm_mpi.cxx
index a2d980b8..dbc7aa9b 100644
--- a/mpi/examm_mpi.cxx
+++ b/mpi/examm_mpi.cxx
@@ -9,7 +9,7 @@ using std::setprecision;
 using std::mutex;
 
 #include <string>
-using std::string;
+using std::string;  
 
 #include <thread>
 using std::thread;
diff --git a/mpi/examm_mpi_nlp.cxx b/mpi/examm_mpi_nlp.cxx
index 493ffadb..2f6c7a0b 100644
--- a/mpi/examm_mpi_nlp.cxx
+++ b/mpi/examm_mpi_nlp.cxx
@@ -1,9 +1,9 @@
 #include <chrono>
 
 #include <iomanip>
-using std::setw;
 using std::fixed;
 using std::setprecision;
+using std::setw;
 
 #include <mutex>
 using std::mutex;
@@ -21,10 +21,11 @@ using std::vector;
 
 #include "common/arguments.hxx"
 #include "common/log.hxx"
+#include "common/weight_initialize.hxx"
 
 #include "rnn/examm.hxx"
 
-#include "word_series/word_series.hxx"
+#include "character_series/character_series.hxx"
 
 #define WORK_REQUEST_TAG 1
 #define GENOME_LENGTH_TAG 2
@@ -39,10 +40,10 @@ EXAMM *examm;
 
 bool finished = false;
 
-vector< vector< vector<double> > > training_inputs;
-vector< vector< vector<double> > > training_outputs;
-vector< vector< vector<double> > > validation_inputs;
-vector< vector< vector<double> > > validation_outputs;
+vector<vector<vector<double>>> training_inputs;
+vector<vector<vector<double>>> training_outputs;
+vector<vector<vector<double>>> validation_inputs;
+vector<vector<vector<double>>> validation_outputs;
 
 void send_work_request(int target) {
     int work_request_message[1];
@@ -56,7 +57,7 @@ void receive_work_request(int source) {
     MPI_Recv(work_request_message, 1, MPI_INT, source, WORK_REQUEST_TAG, MPI_COMM_WORLD, &status);
 }
 
-RNN_Genome* receive_genome_from(int source) {
+RNN_Genome *receive_genome_from(int source) {
     MPI_Status status;
     int length_message[1];
     MPI_Recv(length_message, 1, MPI_INT, source, GENOME_LENGTH_TAG, MPI_COMM_WORLD, &status);
@@ -65,7 +66,7 @@ RNN_Genome* receive_genome_from(int source) {
 
     Log::debug("receiving genome of length: %d from: %d\n", length, source);
 
-    char* genome_str = new char[length + 1];
+    char *genome_str = new char[length + 1];
 
     Log::debug("receiving genome from: %d\n", source);
     MPI_Recv(genome_str, length, MPI_CHAR, source, GENOME_TAG, MPI_COMM_WORLD, &status);
@@ -74,13 +75,13 @@ RNN_Genome* receive_genome_from(int source) {
 
     Log::trace("genome_str:\n%s\n", genome_str);
 
-    RNN_Genome* genome = new RNN_Genome(genome_str, length);
+    RNN_Genome *genome = new RNN_Genome(genome_str, length);
 
-    delete [] genome_str;
+    delete[] genome_str;
     return genome;
 }
 
-void send_genome_to(int target, RNN_Genome* genome) {
+void send_genome_to(int target, RNN_Genome *genome) {
     char *byte_array;
     int32_t length;
 
@@ -125,7 +126,6 @@ void master(int max_rank) {
         int tag = status.MPI_TAG;
         Log::debug("probe returned message from: %d with tag: %d\n", source, tag);
 
-
         //if the message is a work request, send a genome
 
         if (tag == WORK_REQUEST_TAG) {
@@ -135,16 +135,18 @@ void master(int max_rank) {
             RNN_Genome *genome = examm->generate_genome();
             examm_mutex.unlock();
 
-            if (genome == NULL) { //search was completed if it returns NULL for an individual
+            if (genome == NULL) {
+                //search was completed if it returns NULL for an individual
                 //send terminate message
                 Log::info("terminating worker: %d\n", source);
                 send_terminate_message(source);
                 terminates_sent++;
 
                 Log::debug("sent: %d terminates of %d\n", terminates_sent, (max_rank - 1));
-                if (terminates_sent >= max_rank - 1) return;
-
-            } else {
+                if (terminates_sent >= max_rank - 1)
+                    return;
+            }
+            else {
                 //genome->write_to_file( examm->get_output_directory() + "/before_send_gen_" + to_string(genome->get_generation_id()) );
 
                 //send genome
@@ -154,7 +156,8 @@ void master(int max_rank) {
                 //delete this genome as it will not be used again
                 delete genome;
             }
-        } else if (tag == GENOME_LENGTH_TAG) {
+        }
+        else if (tag == GENOME_LENGTH_TAG) {
             Log::debug("received genome from: %d\n", source);
             RNN_Genome *genome = receive_genome_from(source);
 
@@ -165,7 +168,8 @@ void master(int max_rank) {
             //delete the genome as it won't be used again, a copy was inserted
             delete genome;
             //this genome will be deleted if/when removed from population
-        } else {
+        }
+        else {
             Log::fatal("ERROR: received message from %d with unknown tag: %d", source, tag);
             MPI_Abort(MPI_COMM_WORLD, 1);
         }
@@ -190,18 +194,15 @@ void worker(int rank) {
             Log::debug("received terminate tag!\n");
             receive_terminate_message(0);
             break;
-
-        } else if (tag == GENOME_LENGTH_TAG) {
+        }
+        else if (tag == GENOME_LENGTH_TAG) {
             Log::debug("received genome!\n");
-            RNN_Genome* genome = receive_genome_from(0);
+            RNN_Genome *genome = receive_genome_from(0);
 
             //have each worker write the backproagation to a separate log file
             string log_id = "genome_" + to_string(genome->get_generation_id()) + "_worker_" + to_string(rank);
             Log::set_id(log_id);
-
-            genome->backpropagate(training_inputs, training_outputs, validation_inputs, validation_outputs);
-            //genome->backpropagate_stochastic(training_inputs, training_outputs, validation_inputs, validation_outputs);
-
+            genome->backpropagate_stochastic(training_inputs, training_outputs, validation_inputs, validation_outputs);
             Log::release_id(log_id);
 
             //go back to the worker's log for MPI communication
@@ -210,7 +211,8 @@ void worker(int rank) {
             send_genome_to(0, genome);
 
             delete genome;
-        } else {
+        }
+        else {
             Log::fatal("ERROR: received message with unknown tag: %d\n", tag);
             MPI_Abort(MPI_COMM_WORLD, 1);
         }
@@ -226,7 +228,8 @@ void worker(int rank) {
 //     getchar();
 // }
 
-int main(int argc, char** argv) {
+int main(int argc, char **argv) {
+
     MPI_Init(&argc, &argv);
 
     int rank, max_rank;
@@ -239,32 +242,23 @@ int main(int argc, char** argv) {
     Log::set_rank(rank);
     Log::set_id("main_" + to_string(rank));
     Log::restrict_to_rank(0);
+    Log::info("initailized log! \n");
 
+    int32_t character_offset = 1;
+    get_argument(arguments, "--character_offset", true, character_offset);
 
-
-    Corpus* corpus_sets = NULL;
+    Corpus *corpus_sets = NULL;
 
     if (rank == 0) {
         //only have the master process print TSS info
         corpus_sets = Corpus::generate_from_arguments(arguments);
-        if (argument_exists(arguments, "--write_word_series")) {
-            string base_filename;
-            get_argument(arguments, "--write_word_series", true, base_filename);
-            corpus_sets->write_sentence_series_sets(base_filename);
-        }
-    } else {
+    }
+    else {
         corpus_sets = Corpus::generate_from_arguments(arguments);
     }
 
-
-
-    int32_t word_offset = 1;
-    get_argument(arguments, "--word_offset", true, word_offset);
-
-    corpus_sets->export_training_series(word_offset,training_inputs,training_outputs);
-    corpus_sets->export_test_series(word_offset,validation_inputs,validation_outputs);
-
-    Log::info("exported word series.\n");
+    corpus_sets->export_training_series(character_offset, training_inputs, training_outputs);
+    corpus_sets->export_test_series(character_offset, validation_inputs, validation_outputs);
 
     int number_inputs = corpus_sets->get_number_inputs();
     int number_outputs = corpus_sets->get_number_outputs();
@@ -285,7 +279,7 @@ int main(int argc, char** argv) {
 
     int32_t extinction_event_generation_number = 0;
     get_argument(arguments, "--extinction_event_generation_number", false, extinction_event_generation_number);
-  
+
     int32_t islands_to_exterminate;
     get_argument(arguments, "--islands_to_exterminate", false, islands_to_exterminate);
 
@@ -300,7 +294,7 @@ int main(int argc, char** argv) {
 
     double species_threshold = 0.0;
     get_argument(arguments, "--species_threshold", false, species_threshold);
-    
+
     double fitness_threshold = 100;
     get_argument(arguments, "--fitness_threshold", false, fitness_threshold);
 
@@ -312,7 +306,6 @@ int main(int argc, char** argv) {
 
     double neat_c3 = 1;
     get_argument(arguments, "--neat_c3", false, neat_c3);
-
     bool repeat_extinction = argument_exists(arguments, "--repeat_extinction");
 
     int32_t bp_iterations;
@@ -343,13 +336,13 @@ int main(int argc, char** argv) {
     get_argument(arguments, "--max_recurrent_depth", false, max_recurrent_depth);
 
     //bool use_regression = argument_exists(arguments, "--use_regression");
-    bool use_regression = false; //NLP will never use regression
+    bool use_regression = false; //time series will always use regression
 
     string weight_initialize_string = "random";
     get_argument(arguments, "--weight_initialize", false, weight_initialize_string);
     WeightType weight_initialize;
     weight_initialize = get_enum_from_string(weight_initialize_string);
-    
+
     string weight_inheritance_string = "lamarckian";
     get_argument(arguments, "--weight_inheritance", false, weight_inheritance_string);
     WeightType weight_inheritance;
@@ -360,7 +353,6 @@ int main(int argc, char** argv) {
     WeightType mutated_component_weight;
     mutated_component_weight = get_enum_from_string(mutated_component_weight_string);
 
-
     RNN_Genome *seed_genome = NULL;
     string genome_file_name = "";
     if (get_argument(arguments, "--genome_bin", false, genome_file_name)) {
@@ -374,7 +366,6 @@ int main(int argc, char** argv) {
         seed_genome->transfer_to(corpus_sets->get_input_parameter_names(), corpus_sets->get_output_parameter_names(), transfer_learning_version, epigenetic_weights, min_recurrent_depth, max_recurrent_depth);
     }
 
-
     bool start_filled = false;
     get_argument(arguments, "--start_filled", false, start_filled);
 
@@ -382,34 +373,35 @@ int main(int argc, char** argv) {
 
     if (rank == 0) {
         examm = new EXAMM(population_size, number_islands, max_genomes, extinction_event_generation_number, islands_to_exterminate, island_ranking_method,
-            repopulation_method, repopulation_mutations,
-            repeat_extinction, speciation_method,
-            species_threshold, fitness_threshold,
-            neat_c1, neat_c2, neat_c3,
-            corpus_sets->get_input_parameter_names(),
-            corpus_sets->get_output_parameter_names(),
-            corpus_sets->get_normalize_type(),
-            corpus_sets->get_normalize_mins(),
-            corpus_sets->get_normalize_maxs(),
-            corpus_sets->get_normalize_avgs(),
-            corpus_sets->get_normalize_std_devs(),
-            weight_initialize, weight_inheritance, mutated_component_weight,
-            bp_iterations, learning_rate,
-            use_high_threshold, high_threshold,
-            use_low_threshold, low_threshold,
-            use_dropout, dropout_probability,
-            min_recurrent_depth, max_recurrent_depth,
-            use_regression,
-            output_directory,
-            seed_genome,
-            start_filled);
-        
-        if (possible_node_types.size() > 0)  {
+                          repopulation_method, repopulation_mutations, repeat_extinction,
+                          speciation_method,
+                          species_threshold, fitness_threshold,
+                          neat_c1, neat_c2, neat_c3,
+                          corpus_sets->get_input_parameter_names(),
+                          corpus_sets->get_output_parameter_names(),
+                          corpus_sets->get_normalize_type(),
+                          corpus_sets->get_normalize_mins(),
+                          corpus_sets->get_normalize_maxs(),
+                          corpus_sets->get_normalize_avgs(),
+                          corpus_sets->get_normalize_std_devs(),
+                          weight_initialize, weight_inheritance, mutated_component_weight,
+                          bp_iterations, learning_rate,
+                          use_high_threshold, high_threshold,
+                          use_low_threshold, low_threshold,
+                          use_dropout, dropout_probability,
+                          min_recurrent_depth, max_recurrent_depth,
+                          use_regression,
+                          output_directory,
+                          seed_genome,
+                          start_filled);
+
+        if (possible_node_types.size() > 0) {
             examm->set_possible_node_types(possible_node_types);
         }
 
         master(max_rank);
-    } else {
+    }
+    else {
         worker(rank);
     }
     Log::set_id("main_" + to_string(rank));
@@ -421,5 +413,6 @@ int main(int argc, char** argv) {
 
     MPI_Finalize();
     delete corpus_sets;
+
     return 0;
 }
diff --git a/multithreaded/CMakeLists.txt b/multithreaded/CMakeLists.txt
index 17bd13f7..a3971454 100644
--- a/multithreaded/CMakeLists.txt
+++ b/multithreaded/CMakeLists.txt
@@ -2,10 +2,10 @@
 #target_link_libraries(exact_mt exact_strategy exact_image_tools exact_common ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
 
 add_executable(examm_mt_single_series examm_mt_single_series)
-target_link_libraries(examm_mt_single_series examm_strategy exact_time_series exact_word_series exact_common pthread)
+target_link_libraries(examm_mt_single_series examm_strategy exact_time_series exact_character_series exact_common pthread)
 
 add_executable(examm_mt examm_mt)
-target_link_libraries(examm_mt examm_strategy exact_time_series exact_word_series exact_common pthread)
+target_link_libraries(examm_mt examm_strategy exact_time_series exact_character_series exact_common pthread)
 
 add_executable(examm_mt_nlp examm_mt_nlp)
-target_link_libraries(examm_mt_nlp examm_strategy exact_time_series exact_word_series exact_common pthread)
+target_link_libraries(examm_mt_nlp examm_strategy exact_time_series exact_character_series exact_common pthread)
diff --git a/multithreaded/examm_mt_nlp.cxx b/multithreaded/examm_mt_nlp.cxx
index 04efd7b7..d96a5ac6 100644
--- a/multithreaded/examm_mt_nlp.cxx
+++ b/multithreaded/examm_mt_nlp.cxx
@@ -23,7 +23,7 @@ using std::vector;
 
 #include "rnn/examm.hxx"
 
-#include "word_series/word_series.hxx"
+#include "character_series/character_series.hxx"
 
 mutex examm_mutex;
 
@@ -53,8 +53,8 @@ void examm_thread(int id) {
 
         string log_id = "genome_" + to_string(genome->get_generation_id()) + "_thread_" + to_string(id);
         Log::set_id(log_id);
-        genome->backpropagate(training_inputs, training_outputs, validation_inputs, validation_outputs);
-        //genome->backpropagate_stochastic(training_inputs, training_outputs, validation_inputs, validation_outputs);
+        //genome->backpropagate(training_inputs, training_outputs, validation_inputs, validation_outputs);
+        genome->backpropagate_stochastic(training_inputs, training_outputs, validation_inputs, validation_outputs);
         Log::release_id(log_id);
 
         examm_mutex.lock();
@@ -94,13 +94,17 @@ int main(int argc, char  **argv)
     int32_t word_offset = 1;
     get_argument(arguments,"--word_offset",true,word_offset);
 
+    int32_t sequence_length = 64;
+    get_argument(arguments,"--sequence_length",false,sequence_length);
 
 	Corpus* corpus_sets = Corpus::generate_from_arguments(arguments);
 
 	corpus_sets->export_training_series(word_offset,training_inputs,training_outputs);
 	corpus_sets->export_test_series(word_offset,validation_inputs,validation_outputs);
 
-	Log::info("exported word series.\n");
+
+
+    Log::info("exported word series.\n");
     
 	int number_inputs = corpus_sets->get_number_inputs();
     int number_outputs = corpus_sets->get_number_outputs();
diff --git a/multithreaded/examm_nlp_mt.cxx b/multithreaded/examm_nlp_mt.cxx
new file mode 100644
index 00000000..b7cb68bd
--- /dev/null
+++ b/multithreaded/examm_nlp_mt.cxx
@@ -0,0 +1,227 @@
+#include <chrono>
+
+#include <condition_variable>
+using std::condition_variable;
+
+#include <iomanip>
+using std::setw;
+
+#include <mutex>
+using std::mutex;
+
+#include <string>
+using std::string;
+
+#include <thread>
+using std::thread;
+
+#include <vector>
+using std::vector;
+
+#include "common/arguments.hxx"
+#include "common/log.hxx"
+
+#include "rnn/examm.hxx"
+
+#include "character_series/character_series.hxx"
+#include "time_series/time_series.hxx"
+
+mutex examm_mutex;
+
+vector<string> arguments;
+
+EXAMM *examm;
+
+
+bool finished = false;
+
+
+vector< vector< vector<double> > > training_inputs;
+vector< vector< vector<double> > > training_outputs;
+vector< vector< vector<double> > > validation_inputs;
+vector< vector< vector<double> > > validation_outputs;
+
+
+void examm_thread(int id) {
+
+    while (true) {
+        examm_mutex.lock();
+        Log::set_id("main");
+        RNN_Genome *genome = examm->generate_genome();
+        examm_mutex.unlock();
+
+        if (genome == NULL) break;  //generate_individual returns NULL when the search is done
+
+        string log_id = "genome_" + to_string(genome->get_generation_id()) + "_thread_" + to_string(id);
+        Log::set_id(log_id);
+        //genome->backpropagate(training_inputs, training_outputs, validation_inputs, validation_outputs);
+        genome->backpropagate_stochastic(training_inputs, training_outputs, validation_inputs, validation_outputs);
+        Log::release_id(log_id);
+
+        examm_mutex.lock();
+        Log::set_id("main");
+        examm->insert_genome(genome);
+        examm_mutex.unlock();
+
+        delete genome;
+    }
+
+}
+
+void get_individual_inputs(string str, vector<string>& tokens) {
+   string word = "";
+   for (auto x : str) {
+       if (x == ',') {
+           tokens.push_back(word);
+           word = "";
+       }else
+           word = word + x;
+   }
+   tokens.push_back(word);
+}
+
+
+int main(int argc, char  **argv)
+{
+	vector<string> arguments = vector<string>(argv, argv + argc);
+
+	Log::initialize(arguments);
+    Log::set_id("main");
+
+    int number_threads;
+    get_argument(arguments, "--number_threads", true, number_threads);
+
+    int32_t word_offset = 1;
+    get_argument(arguments,"--word_offset",true,word_offset);
+
+
+	Corpus* corpus_sets = Corpus::generate_from_arguments(arguments);
+
+	corpus_sets->export_training_series(word_offset,training_inputs,training_outputs);
+	corpus_sets->export_test_series(word_offset,validation_inputs,validation_outputs);
+
+	Log::info("exported word series.\n");
+
+	int number_inputs = corpus_sets->get_number_inputs();
+    int number_outputs = corpus_sets->get_number_outputs();
+
+	Log::info("number_inputs: %d, number_outputs: %d\n", number_inputs, number_outputs);
+
+	int32_t population_size;
+    get_argument(arguments, "--population_size", true, population_size);
+
+    int32_t number_islands;
+    get_argument(arguments, "--number_islands", true, number_islands);
+
+    int32_t max_genomes;
+    get_argument(arguments, "--max_genomes", true, max_genomes);
+
+    string speciation_method = "";
+    get_argument(arguments, "--speciation_method", false, speciation_method);
+
+    int32_t extinction_event_generation_number = 0;
+    get_argument(arguments, "--extinction_event_generation_number", false, extinction_event_generation_number);
+  
+    int32_t islands_to_exterminate;
+    get_argument(arguments, "--islands_to_exterminate", false, islands_to_exterminate);
+
+    string island_ranking_method = "";
+    get_argument(arguments, "--island_ranking_method", false, island_ranking_method);
+
+    string repopulation_method = "";
+    get_argument(arguments, "--repopulation_method", false, repopulation_method);
+
+    int32_t repopulation_mutations = 0;
+    get_argument(arguments, "--repopulation_mutations", false, repopulation_mutations);
+
+    bool repeat_extinction = argument_exists(arguments, "--repeat_extinction");
+
+    int32_t bp_iterations;
+    get_argument(arguments, "--bp_iterations", true, bp_iterations);
+
+    double learning_rate = 0.001;
+    get_argument(arguments, "--learning_rate", false, learning_rate);
+
+    double high_threshold = 1.0;
+    bool use_high_threshold = get_argument(arguments, "--high_threshold", false, high_threshold);
+
+    double low_threshold = 0.05;
+    bool use_low_threshold = get_argument(arguments, "--low_threshold", false, low_threshold);
+
+    double dropout_probability = 0.0;
+    bool use_dropout = get_argument(arguments, "--dropout_probability", false, dropout_probability);
+
+    string output_directory = "";
+    get_argument(arguments, "--output_directory", false, output_directory);
+
+    vector<string> possible_node_types;
+    get_argument_vector(arguments, "--possible_node_types", false, possible_node_types);
+
+    int32_t min_recurrent_depth = 1;
+    get_argument(arguments, "--min_recurrent_depth", false, min_recurrent_depth);
+
+    int32_t max_recurrent_depth = 10;
+    get_argument(arguments, "--max_recurrent_depth", false, max_recurrent_depth);
+
+    int32_t use_regression = 1;
+    get_argument(arguments,"--use_regression",false,use_regression);
+
+
+    RNN_Genome *seed_genome = NULL;
+    string genome_file_name = "";
+    if (get_argument(arguments, "--genome_bin", false, genome_file_name)) {
+        seed_genome = new RNN_Genome(genome_file_name);
+
+        string transfer_learning_version;
+        get_argument(arguments, "--transfer_learning_version", true, transfer_learning_version);
+
+        bool epigenetic_weights = argument_exists(arguments, "--epigenetic_weights");
+
+        seed_genome->transfer_to(corpus_sets->get_input_parameter_names(), corpus_sets->get_output_parameter_names(), transfer_learning_version, epigenetic_weights, min_recurrent_depth, max_recurrent_depth);
+    }
+
+    bool start_filled = false;
+    if (genome_file_name != "") {
+        get_argument(arguments, "--start_filled", false, start_filled);
+    }
+
+    examm = new EXAMM(population_size, number_islands, max_genomes, extinction_event_generation_number, islands_to_exterminate, island_ranking_method,
+            repopulation_method, repopulation_mutations,
+            repeat_extinction, speciation_method,
+            corpus_sets->get_input_parameter_names(),
+            corpus_sets->get_output_parameter_names(),
+            corpus_sets->get_normalize_type(),
+            corpus_sets->get_normalize_mins(),
+            corpus_sets->get_normalize_maxs(),
+            corpus_sets->get_normalize_avgs(),
+            corpus_sets->get_normalize_std_devs(),
+            bp_iterations, learning_rate,
+            use_high_threshold, high_threshold,
+            use_low_threshold, low_threshold,
+            use_dropout, dropout_probability,
+            min_recurrent_depth, max_recurrent_depth,
+            //use_regression,
+            output_directory,
+            seed_genome,
+            start_filled);
+
+    if (possible_node_types.size() > 0)  {
+        examm->set_possible_node_types(possible_node_types);
+    }
+
+    vector<thread> threads;
+    for (int32_t i = 0; i < number_threads; i++) {
+        threads.push_back( thread(examm_thread, i) );
+    }
+
+    for (int32_t i = 0; i < number_threads; i++) {
+        threads[i].join();
+    }
+
+    finished = true;
+
+    Log::info("completed!\n");
+    Log::release_id("main");
+
+    return 0;
+}
\ No newline at end of file
diff --git a/nlp_scripts/examm_test_12197645_12197645.error b/nlp_scripts/examm_test_12197645_12197645.error
new file mode 100644
index 00000000..5004cdb7
--- /dev/null
+++ b/nlp_scripts/examm_test_12197645_12197645.error
@@ -0,0 +1,23 @@
+Autoloading ucx/1.4.0-gcc-7.4.0-v2ddfog4
+Autoloading rdma-core/20-gcc-7.4.0-l7z64ilg
+Autoloading libnl/3.3.0-gcc-7.4.0-fojudykh
+Autoloading numactl/2.0.12-gcc-7.4.0-iz4isxyc
+Autoloading hwloc/1.11.11-gcc-7.4.0-mcwlonx7
+Autoloading libpciaccess/0.13.5-gcc-7.4.0-ucgnzc4b
+Autoloading libxml2/2.9.8-gcc-7.4.0-thy7vzt2
+Autoloading libiconv/1.15-gcc-7.4.0-sitpcx3p
+Autoloading xz/5.2.4-gcc-7.4.0-qh2fwjgx
+Autoloading zlib/1.2.11-gcc-7.4.0-ml43muis
+Autoloading slurm/18-08-6-2-gcc-7.4.0-24rpjsm2
+Autoloading gmp/6.1.2-gcc-7.4.0-mnaje5ey
+Autoloading mpfr/3.1.6-gcc-7.4.0-vijaqsan
+Autoloading mpc/1.1.0-gcc-7.4.0-zg6tdmm5
+Autoloading isl/0.18-gcc-7.4.0-yzgnajke
+Autoloading libjpeg-turbo/1.5.90-gcc-7.4.0-f4kkdboq
+slurmstepd: error: *** STEP 12197645.0 ON skl-a-03 CANCELLED AT 2020-12-23T09:04:00 DUE TO TIME LIMIT ***
+srun: Job step aborted: Waiting up to 4 seconds for job step to finish.
+slurmstepd: error: *** JOB 12197645 ON skl-a-03 CANCELLED AT 2020-12-23T09:04:00 DUE TO TIME LIMIT ***
+srun: error: skl-a-08: task 2: Terminated
+srun: error: skl-a-10: task 4: Terminated
+srun: error: skl-a-09: task 3: Terminated
+srun: error: skl-a-15: task 5: Terminated
diff --git a/nlp_scripts/examm_test_12197645_12197645.output b/nlp_scripts/examm_test_12197645_12197645.output
new file mode 100644
index 00000000..8db07cb5
--- /dev/null
+++ b/nlp_scripts/examm_test_12197645_12197645.output
@@ -0,0 +1,781 @@
+\t Iteration: /home/vj6810/EXAMM/exact/nlp_results/all_cells/0
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 0 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 1 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 3 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 4 and max rank 60
+got arguments!
+did mpi init!
+initailized log!
+did mpi init!
+got rank 2 and max rank 60
+got rank 5 and max rank 60
+got arguments!
+got arguments!
+initailized log!
+initailized log!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 7 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+did mpi init!
+got rank 8 and max rank 60
+got arguments!
+got rank 6 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 11 and max rank 60
+got arguments!
+did mpi init!
+did mpi init!
+got rank 16 and max rank 60
+got rank 13 and max rank 60
+got arguments!
+got arguments!
+did mpi init!
+got rank 9 and max rank 60
+got arguments!
+did mpi init!
+got rank 14 and max rank 60
+got arguments!
+did mpi init!
+got rank 15 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+did mpi init!
+got rank 10 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 12 and max rank 60
+got arguments!
+initailized log!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 49 and max rank 60
+got arguments!
+did mpi init!
+got rank 51 and max rank 60
+got arguments!
+did mpi init!
+got rank 50 and max rank 60
+got arguments!
+did mpi init!
+got rank 52 and max rank 60
+got arguments!
+did mpi init!
+got rank 46 and max rank 60
+got arguments!
+did mpi init!
+got rank 47 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+did mpi init!
+got rank 48 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 56 and max rank 60
+got arguments!
+did mpi init!
+got rank 55 and max rank 60
+got arguments!
+did mpi init!
+did mpi init!
+got rank 53 and max rank 60
+got rank 54 and max rank 60
+got arguments!
+got arguments!
+did mpi init!
+got rank 58 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+did mpi init!
+got rank 57 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 59 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 35 and max rank 60
+got arguments!
+did mpi init!
+initailized log!
+did mpi init!
+did mpi init!
+got rank 26 and max rank 60
+got rank 37 and max rank 60
+got arguments!
+got arguments!
+got rank 30 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 25 and max rank 60
+got arguments!
+did mpi init!
+got rank 34 and max rank 60
+did mpi init!
+got rank 28 and max rank 60
+got arguments!
+did mpi init!
+got rank 38 and max rank 60
+got arguments!
+did mpi init!
+got rank 29 and max rank 60
+got arguments!
+got arguments!
+did mpi init!
+got rank 27 and max rank 60
+got arguments!
+did mpi init!
+got rank 33 and max rank 60
+initailized log!
+got arguments!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+did mpi init!
+got rank 32 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 31 and max rank 60
+got arguments!
+did mpi init!
+got rank 36 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+did mpi init!
+got rank 41 and max rank 60
+did mpi init!
+got rank 39 and max rank 60
+got arguments!
+got arguments!
+did mpi init!
+got rank 43 and max rank 60
+got arguments!
+did mpi init!
+got rank 44 and max rank 60
+got arguments!
+got rank 42 and max rank 60
+got arguments!
+did mpi init!
+got rank 45 and max rank 60
+got arguments!
+did mpi init!
+got rank 40 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+did mpi init!
+got rank 20 and max rank 60
+got arguments!
+did mpi init!
+got rank 17 and max rank 60
+got arguments!
+did mpi init!
+got rank 18 and max rank 60
+got arguments!
+did mpi init!
+got rank 22 and max rank 60
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+did mpi init!
+got rank 19 and max rank 60
+got arguments!
+did mpi init!
+got rank 24 and max rank 60
+got arguments!
+did mpi init!
+got rank 23 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+initailized log!
+did mpi init!
+got rank 21 and max rank 60
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diff --git a/nlp_scripts/examm_test_12197646_12197646.error b/nlp_scripts/examm_test_12197646_12197646.error
new file mode 100644
index 00000000..36b0a1c7
--- /dev/null
+++ b/nlp_scripts/examm_test_12197646_12197646.error
@@ -0,0 +1,19 @@
+Autoloading ucx/1.4.0-gcc-7.4.0-v2ddfog4
+Autoloading rdma-core/20-gcc-7.4.0-l7z64ilg
+Autoloading libnl/3.3.0-gcc-7.4.0-fojudykh
+Autoloading numactl/2.0.12-gcc-7.4.0-iz4isxyc
+Autoloading hwloc/1.11.11-gcc-7.4.0-mcwlonx7
+Autoloading libpciaccess/0.13.5-gcc-7.4.0-ucgnzc4b
+Autoloading libxml2/2.9.8-gcc-7.4.0-thy7vzt2
+Autoloading libiconv/1.15-gcc-7.4.0-sitpcx3p
+Autoloading xz/5.2.4-gcc-7.4.0-qh2fwjgx
+Autoloading zlib/1.2.11-gcc-7.4.0-ml43muis
+Autoloading slurm/18-08-6-2-gcc-7.4.0-24rpjsm2
+Autoloading gmp/6.1.2-gcc-7.4.0-mnaje5ey
+Autoloading mpfr/3.1.6-gcc-7.4.0-vijaqsan
+Autoloading mpc/1.1.0-gcc-7.4.0-zg6tdmm5
+Autoloading isl/0.18-gcc-7.4.0-yzgnajke
+Autoloading libjpeg-turbo/1.5.90-gcc-7.4.0-f4kkdboq
+slurmstepd: error: *** STEP 12197646.0 ON skl-a-23 CANCELLED AT 2020-12-23T09:05:00 DUE TO TIME LIMIT ***
+srun: Job step aborted: Waiting up to 4 seconds for job step to finish.
+slurmstepd: error: *** JOB 12197646 ON skl-a-23 CANCELLED AT 2020-12-23T09:05:00 DUE TO TIME LIMIT ***
diff --git a/nlp_scripts/examm_test_12197646_12197646.output b/nlp_scripts/examm_test_12197646_12197646.output
new file mode 100644
index 00000000..719fcc8a
--- /dev/null
+++ b/nlp_scripts/examm_test_12197646_12197646.output
@@ -0,0 +1,781 @@
+\t Iteration: /home/vj6810/EXAMM/exact/nlp_results/delta/0
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 0 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 1 and max rank 60
+got arguments!
+did mpi init!
+got rank 2 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 3 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 4 and max rank 60
+got arguments!
+initailized log!
+starting up!
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+got rank 27 and max rank 60
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+got rank 28 and max rank 60
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+got rank 21 and max rank 60
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+did mpi init!
+got rank 29 and max rank 60
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+got rank 31 and max rank 60
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+got rank 32 and max rank 60
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+got rank 33 and max rank 60
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+got rank 34 and max rank 60
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+got rank 36 and max rank 60
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+got rank 30 and max rank 60
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+got rank 35 and max rank 60
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+did mpi init!
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+got rank 10 and max rank 60
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+got rank 8 and max rank 60
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+did mpi init!
+did mpi init!
+got rank 11 and max rank 60
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+did mpi init!
+got rank 6 and max rank 60
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+got rank 9 and max rank 60
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+did mpi init!
+got rank 5 and max rank 60
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+did mpi init!
+got rank 16 and max rank 60
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+did mpi init!
+did mpi init!
+got rank 54 and max rank 60
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+got rank 18 and max rank 60
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+did mpi init!
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+got rank 17 and max rank 60
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+got rank 57 and max rank 60
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+got rank 38 and max rank 60
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+got rank 39 and max rank 60
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+did mpi init!
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diff --git a/nlp_scripts/examm_test_12197647_12197647.error b/nlp_scripts/examm_test_12197647_12197647.error
new file mode 100644
index 00000000..000a7fc4
--- /dev/null
+++ b/nlp_scripts/examm_test_12197647_12197647.error
@@ -0,0 +1,20 @@
+Autoloading ucx/1.4.0-gcc-7.4.0-v2ddfog4
+Autoloading rdma-core/20-gcc-7.4.0-l7z64ilg
+Autoloading libnl/3.3.0-gcc-7.4.0-fojudykh
+Autoloading numactl/2.0.12-gcc-7.4.0-iz4isxyc
+Autoloading hwloc/1.11.11-gcc-7.4.0-mcwlonx7
+Autoloading libpciaccess/0.13.5-gcc-7.4.0-ucgnzc4b
+Autoloading libxml2/2.9.8-gcc-7.4.0-thy7vzt2
+Autoloading libiconv/1.15-gcc-7.4.0-sitpcx3p
+Autoloading xz/5.2.4-gcc-7.4.0-qh2fwjgx
+Autoloading zlib/1.2.11-gcc-7.4.0-ml43muis
+Autoloading slurm/18-08-6-2-gcc-7.4.0-24rpjsm2
+Autoloading gmp/6.1.2-gcc-7.4.0-mnaje5ey
+Autoloading mpfr/3.1.6-gcc-7.4.0-vijaqsan
+Autoloading mpc/1.1.0-gcc-7.4.0-zg6tdmm5
+Autoloading isl/0.18-gcc-7.4.0-yzgnajke
+Autoloading libjpeg-turbo/1.5.90-gcc-7.4.0-f4kkdboq
+slurmstepd: error: *** JOB 12197647 ON skl-a-27 CANCELLED AT 2020-12-23T09:07:00 DUE TO TIME LIMIT ***
+srun: Job step aborted: Waiting up to 4 seconds for job step to finish.
+slurmstepd: error: *** STEP 12197647.0 ON skl-a-27 CANCELLED AT 2020-12-23T09:07:00 DUE TO TIME LIMIT ***
+srun: error: skl-a-29: task 1: Terminated
diff --git a/nlp_scripts/examm_test_12197647_12197647.output b/nlp_scripts/examm_test_12197647_12197647.output
new file mode 100644
index 00000000..dfb33d4d
--- /dev/null
+++ b/nlp_scripts/examm_test_12197647_12197647.output
@@ -0,0 +1,781 @@
+\t Iteration: /home/vj6810/EXAMM/exact/nlp_results/GRU/0
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 0 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 1 and max rank 60
+got arguments!
+did mpi init!
+got rank 2 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 4 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 3 and max rank 60
+got arguments!
+initailized log!
+starting up!
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+got rank 6 and max rank 60
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+initailized log!
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+got rank 24 and max rank 60
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+got rank 42 and max rank 60
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+initailized log!
+did mpi init!
+got rank 38 and max rank 60
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+did mpi init!
+got rank 39 and max rank 60
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+got rank 41 and max rank 60
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+did mpi init!
+got rank 43 and max rank 60
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+initailized log!
+did mpi init!
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+did mpi init!
+got rank 57 and max rank 60
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+got rank 59 and max rank 60
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+did mpi init!
+got rank 52 and max rank 60
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+got rank 58 and max rank 60
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+did mpi init!
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+got rank 29 and max rank 60
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+got rank 34 and max rank 60
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+did mpi init!
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+did mpi init!
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+initailized log!
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+did mpi init!
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diff --git a/nlp_scripts/examm_test_12197648_12197648.error b/nlp_scripts/examm_test_12197648_12197648.error
new file mode 100644
index 00000000..70a55b5d
--- /dev/null
+++ b/nlp_scripts/examm_test_12197648_12197648.error
@@ -0,0 +1,19 @@
+Autoloading ucx/1.4.0-gcc-7.4.0-v2ddfog4
+Autoloading rdma-core/20-gcc-7.4.0-l7z64ilg
+Autoloading libnl/3.3.0-gcc-7.4.0-fojudykh
+Autoloading numactl/2.0.12-gcc-7.4.0-iz4isxyc
+Autoloading hwloc/1.11.11-gcc-7.4.0-mcwlonx7
+Autoloading libpciaccess/0.13.5-gcc-7.4.0-ucgnzc4b
+Autoloading libxml2/2.9.8-gcc-7.4.0-thy7vzt2
+Autoloading libiconv/1.15-gcc-7.4.0-sitpcx3p
+Autoloading xz/5.2.4-gcc-7.4.0-qh2fwjgx
+Autoloading zlib/1.2.11-gcc-7.4.0-ml43muis
+Autoloading slurm/18-08-6-2-gcc-7.4.0-24rpjsm2
+Autoloading gmp/6.1.2-gcc-7.4.0-mnaje5ey
+Autoloading mpfr/3.1.6-gcc-7.4.0-vijaqsan
+Autoloading mpc/1.1.0-gcc-7.4.0-zg6tdmm5
+Autoloading isl/0.18-gcc-7.4.0-yzgnajke
+Autoloading libjpeg-turbo/1.5.90-gcc-7.4.0-f4kkdboq
+slurmstepd: error: *** JOB 12197648 ON skl-a-42 CANCELLED AT 2020-12-23T09:07:00 DUE TO TIME LIMIT ***
+srun: Job step aborted: Waiting up to 4 seconds for job step to finish.
+slurmstepd: error: *** STEP 12197648.0 ON skl-a-42 CANCELLED AT 2020-12-23T09:07:00 DUE TO TIME LIMIT ***
diff --git a/nlp_scripts/examm_test_12197648_12197648.output b/nlp_scripts/examm_test_12197648_12197648.output
new file mode 100644
index 00000000..0bd7cd39
--- /dev/null
+++ b/nlp_scripts/examm_test_12197648_12197648.output
@@ -0,0 +1,781 @@
+\t Iteration: /home/vj6810/EXAMM/exact/nlp_results/LSTM/0
+starting up!
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+got rank 37 and max rank 60
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+got rank 38 and max rank 60
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+did mpi init!
+got rank 18 and max rank 60
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+got arguments!
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diff --git a/nlp_scripts/examm_test_12197649_12197649.error b/nlp_scripts/examm_test_12197649_12197649.error
new file mode 100644
index 00000000..44f13d6d
--- /dev/null
+++ b/nlp_scripts/examm_test_12197649_12197649.error
@@ -0,0 +1,21 @@
+Autoloading ucx/1.4.0-gcc-7.4.0-v2ddfog4
+Autoloading rdma-core/20-gcc-7.4.0-l7z64ilg
+Autoloading libnl/3.3.0-gcc-7.4.0-fojudykh
+Autoloading numactl/2.0.12-gcc-7.4.0-iz4isxyc
+Autoloading hwloc/1.11.11-gcc-7.4.0-mcwlonx7
+Autoloading libpciaccess/0.13.5-gcc-7.4.0-ucgnzc4b
+Autoloading libxml2/2.9.8-gcc-7.4.0-thy7vzt2
+Autoloading libiconv/1.15-gcc-7.4.0-sitpcx3p
+Autoloading xz/5.2.4-gcc-7.4.0-qh2fwjgx
+Autoloading zlib/1.2.11-gcc-7.4.0-ml43muis
+Autoloading slurm/18-08-6-2-gcc-7.4.0-24rpjsm2
+Autoloading gmp/6.1.2-gcc-7.4.0-mnaje5ey
+Autoloading mpfr/3.1.6-gcc-7.4.0-vijaqsan
+Autoloading mpc/1.1.0-gcc-7.4.0-zg6tdmm5
+Autoloading isl/0.18-gcc-7.4.0-yzgnajke
+Autoloading libjpeg-turbo/1.5.90-gcc-7.4.0-f4kkdboq
+slurmstepd: error: *** JOB 12197649 ON skl-a-05 CANCELLED AT 2020-12-23T09:07:00 DUE TO TIME LIMIT ***
+srun: Job step aborted: Waiting up to 4 seconds for job step to finish.
+slurmstepd: error: *** STEP 12197649.0 ON skl-a-05 CANCELLED AT 2020-12-23T09:07:00 DUE TO TIME LIMIT ***
+srun: error: skl-a-60: task 17: Terminated
+srun: error: skl-a-63: task 18: Terminated
diff --git a/nlp_scripts/examm_test_12197649_12197649.output b/nlp_scripts/examm_test_12197649_12197649.output
new file mode 100644
index 00000000..5e45ce35
--- /dev/null
+++ b/nlp_scripts/examm_test_12197649_12197649.output
@@ -0,0 +1,781 @@
+\t Iteration: /home/vj6810/EXAMM/exact/nlp_results/MGU/0
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+word_offset:: -1
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+word_offset:: 1
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diff --git a/nlp_scripts/examm_test_12197650_12197650.error b/nlp_scripts/examm_test_12197650_12197650.error
new file mode 100644
index 00000000..81079c90
--- /dev/null
+++ b/nlp_scripts/examm_test_12197650_12197650.error
@@ -0,0 +1,20 @@
+Autoloading ucx/1.4.0-gcc-7.4.0-v2ddfog4
+Autoloading rdma-core/20-gcc-7.4.0-l7z64ilg
+Autoloading libnl/3.3.0-gcc-7.4.0-fojudykh
+Autoloading numactl/2.0.12-gcc-7.4.0-iz4isxyc
+Autoloading hwloc/1.11.11-gcc-7.4.0-mcwlonx7
+Autoloading libpciaccess/0.13.5-gcc-7.4.0-ucgnzc4b
+Autoloading libxml2/2.9.8-gcc-7.4.0-thy7vzt2
+Autoloading libiconv/1.15-gcc-7.4.0-sitpcx3p
+Autoloading xz/5.2.4-gcc-7.4.0-qh2fwjgx
+Autoloading zlib/1.2.11-gcc-7.4.0-ml43muis
+Autoloading slurm/18-08-6-2-gcc-7.4.0-24rpjsm2
+Autoloading gmp/6.1.2-gcc-7.4.0-mnaje5ey
+Autoloading mpfr/3.1.6-gcc-7.4.0-vijaqsan
+Autoloading mpc/1.1.0-gcc-7.4.0-zg6tdmm5
+Autoloading isl/0.18-gcc-7.4.0-yzgnajke
+Autoloading libjpeg-turbo/1.5.90-gcc-7.4.0-f4kkdboq
+slurmstepd: error: *** JOB 12197650 ON skl-a-03 CANCELLED AT 2020-12-24T17:50:22 DUE TO TIME LIMIT ***
+srun: Job step aborted: Waiting up to 4 seconds for job step to finish.
+slurmstepd: error: *** STEP 12197650.0 ON skl-a-03 CANCELLED AT 2020-12-24T17:50:22 DUE TO TIME LIMIT ***
+srun: error: skl-a-38: task 25: Terminated
diff --git a/nlp_scripts/examm_test_12197650_12197650.output b/nlp_scripts/examm_test_12197650_12197650.output
new file mode 100644
index 00000000..a4c9b5ef
--- /dev/null
+++ b/nlp_scripts/examm_test_12197650_12197650.output
@@ -0,0 +1,781 @@
+\t Iteration: /home/vj6810/EXAMM/exact/nlp_results/UGRNN/0
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 25 and max rank 60
+got arguments!
+initailized log!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 23 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 24 and max rank 60
+got arguments!
+initailized log!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 4 and max rank 60
+got arguments!
+starting up!
+did mpi init!
+starting up!
+got rank 6 and max rank 60
+starting up!
+got arguments!
+starting up!
+did mpi init!
+got rank 3 and max rank 60
+got arguments!
+starting up!
+starting up!
+starting up!
+starting up!
+initailized log!
+initailized log!
+initailized log!
+did mpi init!
+got rank 5 and max rank 60
+got arguments!
+initailized log!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 0 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 1 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 2 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+did mpi init!
+got rank 8 and max rank 60
+got arguments!
+got rank 7 and max rank 60
+got arguments!
+did mpi init!
+got rank 9 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+initailized log!
+did mpi init!
+got rank 10 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 11 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 12 and max rank 60
+got arguments!
+initailized log!
+starting up!
+starting up!
+did mpi init!
+got rank 14 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 27 and max rank 60
+got arguments!
+did mpi init!
+got rank 29 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 31 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 33 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 26 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 28 and max rank 60
+did mpi init!
+got rank 13 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 30 and max rank 60
+got arguments!
+did mpi init!
+got rank 32 and max rank 60
+got arguments!
+got arguments!
+initailized log!
+initailized log!
+initailized log!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+starting up!
+did mpi init!
+got rank 15 and max rank 60
+got arguments!
+did mpi init!
+did mpi init!
+got rank 18 and max rank 60
+got rank 35 and max rank 60
+got arguments!
+got arguments!
+did mpi init!
+did mpi init!
+did mpi init!
+got rank 22 and max rank 60
+got arguments!
+got rank 39 and max rank 60
+did mpi init!
+got arguments!
+got rank 20 and max rank 60
+got rank 34 and max rank 60
+got arguments!
+got arguments!
+initailized log!
+did mpi init!
+initailized log!
+did mpi init!
+did mpi init!
+got rank 19 and max rank 60
+got arguments!
+initailized log!
+got rank 41 and max rank 60
+got arguments!
+initailized log!
+got rank 36 and max rank 60
+did mpi init!
+got rank 21 and max rank 60
+got arguments!
+initailized log!
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+initailized log!
+got rank 17 and max rank 60
+initailized log!
+got arguments!
+did mpi init!
+got rank 37 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 38 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 40 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 16 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 44 and max rank 60
+got arguments!
+did mpi init!
+got rank 51 and max rank 60
+got arguments!
+did mpi init!
+did mpi init!
+got rank 52 and max rank 60
+got rank 55 and max rank 60
+got arguments!
+got arguments!
+did mpi init!
+got rank 54 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+initailized log!
+initailized log!
+initailized log!
+got rank 46 and max rank 60
+got arguments!
+did mpi init!
+got rank 48 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 57 and max rank 60
+did mpi init!
+got arguments!
+got rank 50 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 43 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 42 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 45 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 47 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 49 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 53 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 56 and max rank 60
+got arguments!
+initailized log!
+initailized log!
+did mpi init!
+got rank 58 and max rank 60
+got arguments!
+initailized log!
+did mpi init!
+got rank 59 and max rank 60
+got arguments!
+initailized log!
+word_offset:: -1
+word_offset:: -1
+word_offset:: -1
+word_offset:: -1
+word_offset:: -1
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+word_offset:: 1
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+word_offset:: 1
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+word_offset:: 1
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diff --git a/run_lstm_nlp.sh b/nlp_scripts/run_all.sh
similarity index 58%
rename from run_lstm_nlp.sh
rename to nlp_scripts/run_all.sh
index c452b7f8..3ff47356 100644
--- a/run_lstm_nlp.sh
+++ b/nlp_scripts/run_all.sh
@@ -6,20 +6,20 @@
 
 #SBATCH -A examm    #just examm examm_thompson is not a valid account
 
-#SBATCH -o cluster_logs/examm_test_%A.output
-#SBATCH -e cluster_logs/examm_test_%A.error
+#SBATCH -o examm_test_%A_%J.output
+#SBATCH -e examm_test_%A_%J.error
 
 #SBATCH --mail-user vj6810@rit.edu
 
 #SBATCH --mail-type=ALL
 
-#SBATCH -t 5-0     # if you want to run for 4 days 1-72:0:0
+#SBATCH -t 1-0     # if you want to run for 4 days 1-72:0:0
 
 # Put the job in the "work" partition and request FOUR cores for one task
 # "work" is the default partition so it can be omitted without issue.
 
 ## Please not that each node on the cluster is 36 cores
-#SBATCH -p tier3 -n 4
+#SBATCH -p tier3 -n 9
 
 
 # Job memory requirements in MB
@@ -32,24 +32,26 @@ module load gcc
 module load libtiff
 
 
-EXAMM="/home/vj6810/EXACT/exact_/exact"
+EXAMM="/home/vj6810/EXAMM/exact"
 
 for folder in 0 1 2 3 4 ; do
-    exp_name="$EXAMM/nlp_results_1/$folder"
+    exp_name="$EXAMM/nlp_results/all_cells/$folder"
     mkdir -p $exp_name
     echo "\t Iteration: $exp_name"
-    $EXAMM/build/multithreaded/examm_nlp --number_threads 9 \
-    --training_filenames ../datasets/pennchar/train.txt \
-    --test_filenames ../datasets/pennchar/valid.txt \
+    $EXAMM/build/multithreaded/examm_mt_nlp --number_threads 9 \
+    --training_filenames $EXAMM/datasets/pennchar/train.txt \
+    --test_filenames $EXAMM/datasets/pennchar/valid.txt \
     --word_offset 1 \
+    --sequence_length 64 \
     --number_islands 10 \
     --population_size 10 \
-    --max_genomes 2000 \
+    --max_genomes 5000 \
     --bp_iterations 10 \
+    --use_regression 0 \
     --output_directory $exp_name \
-    --possible_node_types simple LSTM \
+    --possible_node_types simple UGRNN MGU GRU delta LSTM \
     --normalize min_max \
-    --std_message_level INFO \
-    --file_message_level INFO
-    
-done
\ No newline at end of file
+    --std_message_level ERROR \
+    --file_message_level ERROR
+
+done
diff --git a/nlp_scripts/run_all_cells.sh b/nlp_scripts/run_all_cells.sh
new file mode 100644
index 00000000..49e3892e
--- /dev/null
+++ b/nlp_scripts/run_all_cells.sh
@@ -0,0 +1,57 @@
+#!/bin/bash -l
+# NOTE the -l flag!
+#
+
+#SBATCH -J examm_lstm_nlp
+
+#SBATCH -A examm    #just examm examm_thompson is not a valid account
+
+#SBATCH -o examm_test_%A_%J.output
+#SBATCH -e examm_test_%A_%J.error
+
+#SBATCH --mail-user vj6810@rit.edu
+
+#SBATCH --mail-type=ALL
+
+#SBATCH -t 4-0     # if you want to run for 4 days 1-72:0:0
+
+# Put the job in the "work" partition and request FOUR cores for one task
+# "work" is the default partition so it can be omitted without issue.
+
+## Please not that each node on the cluster is 36 cores
+#SBATCH -p tier3 -n 61
+
+
+# Job memory requirements in MB
+#SBATCH --mem-per-cpu=40G  # I like to mem with a suffix [K|M|G|T] 5000
+
+#module load module_future
+#module load openmpi-1.10-x86_64
+module load openmpi
+module load gcc
+module load libtiff
+
+
+EXAMM="/home/vj6810/EXAMM/exact"
+
+for folder in 0 1 2 3 4 ; do
+    exp_name="$EXAMM/nlp_results/all_cells/$folder"
+    mkdir -p $exp_name
+    echo "\t Iteration: $exp_name"
+    srun -n 60 $EXAMM/build/mpi/examm_mpi_nlp  \
+    --training_filenames $EXAMM/datasets/pennchar/train.txt \
+    --test_filenames $EXAMM/datasets/pennchar/valid.txt \
+    --word_offset 1 \
+    --sequence_length 64 \
+    --number_islands 10 \
+    --population_size 10 \
+    --max_genomes 5000 \
+    --bp_iterations 10 \
+    --use_regression 0 \
+    --output_directory $exp_name \
+    --possible_node_types simple UGRNN MGU GRU delta LSTM \
+    --normalize min_max \
+    --std_message_level ERROR \
+    --file_message_level ERROR
+
+done
diff --git a/nlp_scripts/run_delta_cells.sh b/nlp_scripts/run_delta_cells.sh
new file mode 100644
index 00000000..4a4fc677
--- /dev/null
+++ b/nlp_scripts/run_delta_cells.sh
@@ -0,0 +1,57 @@
+#!/bin/bash -l
+# NOTE the -l flag!
+#
+
+#SBATCH -J examm_lstm_nlp
+
+#SBATCH -A examm    #just examm examm_thompson is not a valid account
+
+#SBATCH -o examm_test_%A_%J.output
+#SBATCH -e examm_test_%A_%J.error
+
+#SBATCH --mail-user vj6810@rit.edu
+
+#SBATCH --mail-type=ALL
+
+#SBATCH -t 4-0     # if you want to run for 4 days 1-72:0:0
+
+# Put the job in the "work" partition and request FOUR cores for one task
+# "work" is the default partition so it can be omitted without issue.
+
+## Please not that each node on the cluster is 36 cores
+#SBATCH -p tier3 -n 61
+
+
+# Job memory requirements in MB
+#SBATCH --mem-per-cpu=40G  # I like to mem with a suffix [K|M|G|T] 5000
+
+#module load module_future
+#module load openmpi-1.10-x86_64
+module load openmpi
+module load gcc
+module load libtiff
+
+
+EXAMM="/home/vj6810/EXAMM/exact"
+
+for folder in 0 1 2 3 4 ; do
+    exp_name="$EXAMM/nlp_results/delta/$folder"
+    mkdir -p $exp_name
+    echo "\t Iteration: $exp_name"
+    srun -n 60 $EXAMM/build/mpi/examm_mpi_nlp  \
+    --training_filenames $EXAMM/datasets/pennchar/train.txt \
+    --test_filenames $EXAMM/datasets/pennchar/valid.txt \
+    --word_offset 1 \
+    --sequence_length 64 \
+    --number_islands 10 \
+    --population_size 10 \
+    --max_genomes 5000 \
+    --bp_iterations 10 \
+    --use_regression 0 \
+    --output_directory $exp_name \
+    --possible_node_types simple delta \
+    --normalize min_max \
+    --std_message_level ERROR \
+    --file_message_level ERROR
+
+done
diff --git a/run_enarc_nlp.sh b/nlp_scripts/run_gru_cells.sh
similarity index 54%
rename from run_enarc_nlp.sh
rename to nlp_scripts/run_gru_cells.sh
index 89b9dd52..c7532b33 100644
--- a/run_enarc_nlp.sh
+++ b/nlp_scripts/run_gru_cells.sh
@@ -6,24 +6,24 @@
 
 #SBATCH -A examm    #just examm examm_thompson is not a valid account
 
-#SBATCH -o cluster_logs/examm_test_%A.output
-#SBATCH -e cluster_logs/examm_test_%A.error
+#SBATCH -o examm_test_%A_%J.output
+#SBATCH -e examm_test_%A_%J.error
 
 #SBATCH --mail-user vj6810@rit.edu
 
 #SBATCH --mail-type=ALL
 
-#SBATCH -t 5-0     # if you want to run for 4 days 1-72:0:0
+#SBATCH -t 4-0     # if you want to run for 4 days 1-72:0:0
 
 # Put the job in the "work" partition and request FOUR cores for one task
 # "work" is the default partition so it can be omitted without issue.
 
 ## Please not that each node on the cluster is 36 cores
-#SBATCH -p tier3 -n 4
+#SBATCH -p tier3 -n 61
 
 
 # Job memory requirements in MB
-#SBATCH --mem-per-cpu=4G  # I like to mem with a suffix [K|M|G|T] 5000
+#SBATCH --mem-per-cpu=40G  # I like to mem with a suffix [K|M|G|T] 5000
 
 #module load module_future
 #module load openmpi-1.10-x86_64
@@ -32,24 +32,26 @@ module load gcc
 module load libtiff
 
 
-EXAMM="/home/vj6810/EXACT/exact_/exact"
+EXAMM="/home/vj6810/EXAMM/exact"
 
 for folder in 0 1 2 3 4 ; do
-    exp_name="$EXAMM/nlp_results_2/$folder"
+    exp_name="$EXAMM/nlp_results/GRU/$folder"
     mkdir -p $exp_name
     echo "\t Iteration: $exp_name"
-    $EXAMM/build/multithreaded/examm_nlp --number_threads 9 \
-    --training_filenames ../datasets/pennchar/train.txt \
-    --test_filenames ../datasets/pennchar/valid.txt \
+    srun -n 60 $EXAMM/build/mpi/examm_mpi_nlp  \
+    --training_filenames $EXAMM/datasets/pennchar/train.txt \
+    --test_filenames $EXAMM/datasets/pennchar/valid.txt \
     --word_offset 1 \
+    --sequence_length 64 \
     --number_islands 10 \
     --population_size 10 \
-    --max_genomes 2000 \
+    --max_genomes 5000 \
     --bp_iterations 10 \
+    --use_regression 0 \
     --output_directory $exp_name \
-    --possible_node_types simple ENARC \
+    --possible_node_types simple GRU \
     --normalize min_max \
-    --std_message_level INFO \
-    --file_message_level INFO
-    
-done
\ No newline at end of file
+    --std_message_level ERROR \
+    --file_message_level ERROR
+
+done
diff --git a/nlp_scripts/run_lstm_cells.sh b/nlp_scripts/run_lstm_cells.sh
new file mode 100644
index 00000000..5dbabe1f
--- /dev/null
+++ b/nlp_scripts/run_lstm_cells.sh
@@ -0,0 +1,57 @@
+#!/bin/bash -l
+# NOTE the -l flag!
+#
+
+#SBATCH -J examm_lstm_nlp
+
+#SBATCH -A examm    #just examm examm_thompson is not a valid account
+
+#SBATCH -o examm_test_%A_%J.output
+#SBATCH -e examm_test_%A_%J.error
+
+#SBATCH --mail-user vj6810@rit.edu
+
+#SBATCH --mail-type=ALL
+
+#SBATCH -t 4-0     # if you want to run for 4 days 1-72:0:0
+
+# Put the job in the "work" partition and request FOUR cores for one task
+# "work" is the default partition so it can be omitted without issue.
+
+## Please not that each node on the cluster is 36 cores
+#SBATCH -p tier3 -n 61
+
+
+# Job memory requirements in MB
+#SBATCH --mem-per-cpu=40G  # I like to mem with a suffix [K|M|G|T] 5000
+
+#module load module_future
+#module load openmpi-1.10-x86_64
+module load openmpi
+module load gcc
+module load libtiff
+
+
+EXAMM="/home/vj6810/EXAMM/exact"
+
+for folder in 0 1 2 3 4 ; do
+    exp_name="$EXAMM/nlp_results/LSTM/$folder"
+    mkdir -p $exp_name
+    echo "\t Iteration: $exp_name"
+    srun -n 60 $EXAMM/build/mpi/examm_mpi_nlp  \
+    --training_filenames $EXAMM/datasets/pennchar/train.txt \
+    --test_filenames $EXAMM/datasets/pennchar/valid.txt \
+    --word_offset 1 \
+    --sequence_length 64 \
+    --number_islands 10 \
+    --population_size 10 \
+    --max_genomes 5000 \
+    --bp_iterations 10 \
+    --use_regression 0 \
+    --output_directory $exp_name \
+    --possible_node_types simple LSTM \
+    --normalize min_max \
+    --std_message_level ERROR \
+    --file_message_level ERROR
+
+done
diff --git a/nlp_scripts/run_mgu_cells.sh b/nlp_scripts/run_mgu_cells.sh
new file mode 100644
index 00000000..10b1244d
--- /dev/null
+++ b/nlp_scripts/run_mgu_cells.sh
@@ -0,0 +1,57 @@
+#!/bin/bash -l
+# NOTE the -l flag!
+#
+
+#SBATCH -J examm_lstm_nlp
+
+#SBATCH -A examm    #just examm examm_thompson is not a valid account
+
+#SBATCH -o examm_test_%A_%J.output
+#SBATCH -e examm_test_%A_%J.error
+
+#SBATCH --mail-user vj6810@rit.edu
+
+#SBATCH --mail-type=ALL
+
+#SBATCH -t 4-0     # if you want to run for 4 days 1-72:0:0
+
+# Put the job in the "work" partition and request FOUR cores for one task
+# "work" is the default partition so it can be omitted without issue.
+
+## Please not that each node on the cluster is 36 cores
+#SBATCH -p tier3 -n 61
+
+
+# Job memory requirements in MB
+#SBATCH --mem-per-cpu=40G  # I like to mem with a suffix [K|M|G|T] 5000
+
+#module load module_future
+#module load openmpi-1.10-x86_64
+module load openmpi
+module load gcc
+module load libtiff
+
+
+EXAMM="/home/vj6810/EXAMM/exact"
+
+for folder in 0 1 2 3 4 ; do
+    exp_name="$EXAMM/nlp_results/MGU/$folder"
+    mkdir -p $exp_name
+    echo "\t Iteration: $exp_name"
+    srun -n 60 $EXAMM/build/mpi/examm_mpi_nlp  \
+    --training_filenames $EXAMM/datasets/pennchar/train.txt \
+    --test_filenames $EXAMM/datasets/pennchar/valid.txt \
+    --word_offset 1 \
+    --sequence_length 64 \
+    --number_islands 10 \
+    --population_size 10 \
+    --max_genomes 5000 \
+    --bp_iterations 10 \
+    --use_regression 0 \
+    --output_directory $exp_name \
+    --possible_node_types simple MGU \
+    --normalize min_max \
+    --std_message_level ERROR \
+    --file_message_level ERROR
+
+done
diff --git a/nlp_scripts/run_ugrnn_cells.sh b/nlp_scripts/run_ugrnn_cells.sh
new file mode 100644
index 00000000..4121b35f
--- /dev/null
+++ b/nlp_scripts/run_ugrnn_cells.sh
@@ -0,0 +1,57 @@
+#!/bin/bash -l
+# NOTE the -l flag!
+#
+
+#SBATCH -J examm_lstm_nlp
+
+#SBATCH -A examm    #just examm examm_thompson is not a valid account
+
+#SBATCH -o examm_test_%A_%J.output
+#SBATCH -e examm_test_%A_%J.error
+
+#SBATCH --mail-user vj6810@rit.edu
+
+#SBATCH --mail-type=ALL
+
+#SBATCH -t 4-0     # if you want to run for 4 days 1-72:0:0
+
+# Put the job in the "work" partition and request FOUR cores for one task
+# "work" is the default partition so it can be omitted without issue.
+
+## Please not that each node on the cluster is 36 cores
+#SBATCH -p tier3 -n 61
+
+
+# Job memory requirements in MB
+#SBATCH --mem-per-cpu=40G  # I like to mem with a suffix [K|M|G|T] 5000
+
+#module load module_future
+#module load openmpi-1.10-x86_64
+module load openmpi
+module load gcc
+module load libtiff
+
+
+EXAMM="/home/vj6810/EXAMM/exact"
+
+for folder in 0 1 2 3 4 ; do
+    exp_name="$EXAMM/nlp_results/UGRNN/$folder"
+    mkdir -p $exp_name
+    echo "\t Iteration: $exp_name"
+    srun -n 60 $EXAMM/build/mpi/examm_mpi_nlp  \
+    --training_filenames $EXAMM/datasets/pennchar/train.txt \
+    --test_filenames $EXAMM/datasets/pennchar/valid.txt \
+    --word_offset 1 \
+    --sequence_length 64 \
+    --number_islands 10 \
+    --population_size 10 \
+    --max_genomes 5000 \
+    --bp_iterations 10 \
+    --use_regression 0 \
+    --output_directory $exp_name \
+    --possible_node_types simple UGRNN \
+    --normalize min_max \
+    --std_message_level ERROR \
+    --file_message_level ERROR
+
+done
diff --git a/rnn/enas_dag_node.cxx b/rnn/enas_dag_node.cxx
index 4637b37d..b7e14883 100644
--- a/rnn/enas_dag_node.cxx
+++ b/rnn/enas_dag_node.cxx
@@ -149,8 +149,8 @@ double ENAS_DAG_Node::activation_derivative(double value, double input, int act_
 
 void ENAS_DAG_Node::input_fired(int time, double incoming_output) {
 
-    vector<int> connections {0,1,1,1,2,5,3,5,4};
-    vector<int> operations {1,1,1,3,3,0,2,1,2};
+    vector<int> connections{0, 1, 1, 1, 2, 5, 3, 5, 4};
+    vector<int> operations{1, 1, 1, 3, 3, 0, 2, 1, 2};
     vector<int> node_output(connections.size(),1);
     inputs_fired[time]++;
     input_values[time] += incoming_output;
diff --git a/rnn/enas_dag_node.hxx b/rnn/enas_dag_node.hxx
index fdbd2af7..2adb9a42 100644
--- a/rnn/enas_dag_node.hxx
+++ b/rnn/enas_dag_node.hxx
@@ -23,27 +23,49 @@ using std::make_pair;
 class ENAS_DAG_Node : public RNN_Node_Interface{
 	private:
 		
-		// starting node 0
+		/**
+         * Weight of the start node in the memory cell.
+         */
 		double rw;
+		/**
+         * Weight of the start node in the memory cell.
+         */
 		double zw;
 		
-		// weights for other nodes
+
+		/**
+         * Weights of the subseqeuent nodes in topological order the memory cell.
+         */
 		vector<double> weights;
 
 
-		// gradients of starting node 0
+		/**
+         * Gradient of the weight of the start node in the memory cell.
+         */
 		vector<double> d_zw;
+		/**
+         * Gradient of the weight of the start node in the memory cell.
+         */
 		vector<double> d_rw;
 
-		// gradients of other nodes 
+		/**
+         * Gradient of the  weights of the other nodes in the memory cell
+         */ 
 		vector<vector<double>> d_weights;
 		
-		// gradient of prev output
+		/**
+         * Gradient of the previous output i.e. t-1 in the memory cell.
+         */
 		vector<double> d_h_prev;
 
-		// output of edge between node with weight wj from node with weight wi 	
+		/**
+         * Outputs of the nodes in the memory cell connecting with weight wj from node with weight wi.
+         */
 		vector<vector<double>> Nodes;
-		// derivative of edge between node with weight wj from node with weight wi 	
+		
+		/**
+         * Derivative of the nodes in the memory cell connecting with weight wj from node with weight wi.
+         */ 	
 		vector<vector<double>> l_Nodes;
 
 		
@@ -59,10 +81,44 @@ class ENAS_DAG_Node : public RNN_Node_Interface{
         void initialize_uniform_random(minstd_rand0 &generator, uniform_real_distribution<double> &rng);
 
 
+        /**
+        *   Gives the gradients in essence the deriviative  of the weights in the memory cell in  the network.    
+        *   
+        *   \param gradient_name in the weight name.
+        *   
+        *   \return gradient. 
+        */
         double get_gradient(string gradient_name);
+        
+        /**
+        *   Gives the gradients in essence the deriviative  of the weights in the memory cell in  the network.    
+        *   
+        *   \param gradient_name in the weight name.
+        *   
+        * 	prints the gradient. 
+        */
         void print_gradient(string gradient_name);
 
+
+        /**
+        *   Gives the activations of the node in the memory cell in the network.    
+        *   
+        *   \param value is  the output of the node after multiplying weights
+        *   \param act_operator is the actiation type : sigmoid, tanh, swish, identity
+        *   
+        *   \return output of the node after applying activation
+        */
         double activation(double value, int act_operator);
+        
+        /**
+        *   Gives the activations derviative of the node in the memory cell in the network.    
+        *   
+        *   \param input is the input of the node before multiplying weights
+        *   \param value is  the output of the node after multiplying weights
+        *   \param act_operator is the actiation type : sigmoid, tanh, swish, identity
+        *   
+        *   \return output derivative of the node after applying activation
+        */
         double activation_derivative(double value, double input, int act_operator);
 
         void input_fired(int time, double incoming_output);
diff --git a/rnn/examm.cxx b/rnn/examm.cxx
index 854cae0d..f9ea02f5 100644
--- a/rnn/examm.cxx
+++ b/rnn/examm.cxx
@@ -42,6 +42,9 @@ using std::to_string;
 #include "delta_node.hxx"
 #include "ugrnn_node.hxx"
 #include "mgu_node.hxx"
+#include "enas_dag_node.hxx"
+#include "enarc_node.hxx"
+#include "random_dag_node.hxx"
 
 #include "common/files.hxx"
 #include "common/log.hxx"
@@ -184,6 +187,8 @@ EXAMM::EXAMM(
     possible_node_types.push_back(LSTM_NODE);
     possible_node_types.push_back(ENARC_NODE);
     possible_node_types.push_back(DELTA_NODE);
+    possible_node_types.push_back(ENAS_DAG_NODE);
+    possible_node_types.push_back(RANDOM_DAG_NODE);
 
     bool node_ops = true;
     if (node_ops) {
diff --git a/rnn/mse.cxx b/rnn/mse.cxx
index 37c085ef..3403c031 100644
--- a/rnn/mse.cxx
+++ b/rnn/mse.cxx
@@ -3,6 +3,9 @@
 #include <vector>
 using std::vector;
 
+#include<algorithm>
+using std::max;
+
 #include "rnn.hxx"
 
 void get_mse(const vector<double> &output_values, const vector<double> &expected, double &mse, vector<double> &deltas) {
@@ -77,6 +80,7 @@ void get_mae(const vector<double> &output_values, const vector<double> &expected
     for (uint32_t j = 0; j < expected.size(); j++) {
         deltas[j] *= d_mae;
     }
+
 }
 
 void get_mae(RNN *genome, const vector< vector<double> > &expected, double &mae_sum, vector< vector<double> > &deltas) {
@@ -110,3 +114,47 @@ void get_mae(RNN *genome, const vector< vector<double> > &expected, double &mae_
         }
     }
 }
+
+
+void get_se(RNN *genome, const vector< vector<double> > &expected, double &ce_sum, vector< vector<double> > &deltas) {
+    deltas.assign(genome->output_nodes.size(), vector<double>(expected[0].size(), 0.0));
+
+    ce_sum = 0.0;
+    double softmax;
+    double error;
+
+    for (uint32_t i = 0; i < genome->output_nodes.size(); i++) {
+        genome->output_nodes[i]->error_values.resize(expected[i].size());
+    }
+
+    
+    for (uint32_t j = 0; j < expected[0].size(); j++) {
+        double softmax_sum = 0.0;
+        double cross_entropy = 0.0;
+        // get sum of all the outputs of the timestep j from all output node i
+
+        double max_output_node_value = genome->output_nodes[0]->output_values[j];
+        for (uint32_t i = 0; i < genome->output_nodes.size(); i++) {
+            max_output_node_value = max(max_output_node_value, genome->output_nodes[i]->output_values[j]);
+        }
+
+        for (uint32_t i = 0; i < genome->output_nodes.size(); i++) {
+            softmax_sum += exp(genome->output_nodes[i]->output_values[j] - max_output_node_value);
+        }
+
+        // for each 
+
+        for (uint32_t i = 0; i < genome->output_nodes.size(); i++) {
+            softmax = exp(genome->output_nodes[i]->output_values[j] - max_output_node_value) / softmax_sum;
+            error = softmax - expected[i][j];
+
+            deltas[i][j] = error;
+            cross_entropy = -expected[i][j] * log(softmax);
+            ce_sum += cross_entropy ;
+        }
+        
+    }
+
+   
+}
+
diff --git a/rnn/mse.hxx b/rnn/mse.hxx
index 063dc6f2..7576490c 100644
--- a/rnn/mse.hxx
+++ b/rnn/mse.hxx
@@ -4,13 +4,19 @@
 #include <vector>
 using std::vector;
 
+#include<algorithm>
+using std::max;
+
 #include "rnn.hxx"
 
 void get_mse(const vector<double> &output_values, const vector<double> &expected, double &mse, vector<double> &deltas);
-void get_mse(RNN* genome, const vector< vector<double> > &expected, double &mse, vector< vector<double> > &deltas);
+void get_mse(RNN* genome, const vector< vector<double> > &expected, double &mse_sum, vector< vector<double> > &deltas);
 
 void get_mae(const vector<double> &output_values, const vector<double> &expected, double &mae, vector<double> &deltas);
-void get_mae(RNN* genome, const vector< vector<double> > &expected, double &mae, vector< vector<double> > &deltas);
+void get_mae(RNN* genome, const vector< vector<double> > &expected, double &mae_sum, vector< vector<double> > &deltas);
 
+//Have to do this
+//void get_se(const vector<double> &output_values, const vector<double> &expected, double &ce, vector<double> &deltas);
+void get_se(RNN* genome, const vector< vector<double> > &expected, double &ce_sum, vector< vector<double> > &deltas);
 
 #endif
diff --git a/rnn/random_dag_node.cxx b/rnn/random_dag_node.cxx
index 1606a739..f4d79425 100644
--- a/rnn/random_dag_node.cxx
+++ b/rnn/random_dag_node.cxx
@@ -160,12 +160,13 @@ void RANDOM_DAG_Node::input_fired(int time, double incoming_output) {
                                 {0,0,0,0,0,0,0,1},
                                 {0,0,0,0,0,0,0,0}
                             };
-    vector<int> operations {1,1,1,3,3,0,2,1,2};
-    int no_of_nodes = connections.size();
-    for(int i = 0;i<no_of_nodes;i++){
-        if(node_output.size() < no_of_nodes){
-            node_output.push_back(1);   
-        }else{
+         vector<int> operations{1, 1, 1, 3, 3, 0, 2, 1, 2};
+         int no_of_nodes = connections.size();
+         for (int i = 0; i < no_of_nodes; i++) {
+             if (node_output.size() < no_of_nodes) {
+                 node_output.push_back(1);
+             }
+             else{
             node_output[i] = 1;
         }
     }
diff --git a/rnn/rnn.cxx b/rnn/rnn.cxx
index 2ab6096f..ddf046cf 100644
--- a/rnn/rnn.cxx
+++ b/rnn/rnn.cxx
@@ -1,6 +1,7 @@
 #include <algorithm>
 using std::sort;
 using std::upper_bound;
+using std::max;
 
 #include <chrono>
 
@@ -42,7 +43,7 @@ using std::vector;
 #include "common/log.hxx"
 
 #include "time_series/time_series.hxx"
-#include "word_series/word_series.hxx"
+#include "character_series/character_series.hxx"
 
 void RNN::validate_parameters(const vector<string> &input_parameter_names, const vector<string> &output_parameter_names) {
     Log::debug("validating parameters -- input_parameter_names.size(): %d, output_parameter_names.size(): %d\n", input_parameter_names.size(), output_parameter_names.size());
@@ -406,12 +407,61 @@ void RNN::backward_pass(double error, bool using_dropout, bool training, double
     }
 }
 
+void RNN::backward_pass_class(double error, bool using_dropout, bool training, double dropout_probability)
+{
+    //do a propagate forward for time == (series_length - 1) so that the
+    // output fired count on each node will be correct for the first pass
+    //through the RNN
+    for (uint32_t i = 0; i < recurrent_edges.size(); i++)
+    {
+        if (recurrent_edges[i]->is_reachable())
+            recurrent_edges[i]->first_propagate_backward();
+    }
+
+    for (int32_t time = series_length - 1; time >= 0; time--)
+    {
+
+        for (uint32_t i = 0; i < output_nodes.size(); i++)
+        {
+            //output_nodes[i]->error_fired(time, 1);
+
+            output_nodes[i]->error_fired(time, cross_entropy_losses[time]);
+        }
+
+        if (using_dropout)
+        {
+            for (int32_t i = (int32_t)edges.size() - 1; i >= 0; i--)
+            {
+                if (edges[i]->is_reachable())
+                    edges[i]->propagate_backward(time, training, dropout_probability);
+            }
+        }
+        else
+        {
+            for (int32_t i = (int32_t)edges.size() - 1; i >= 0; i--)
+            {
+                if (edges[i]->is_reachable())
+                    edges[i]->propagate_backward(time);
+            }
+        }
+
+        for (int32_t i = (int32_t)recurrent_edges.size() - 1; i >= 0; i--)
+        {
+            if (recurrent_edges[i]->is_reachable())
+                recurrent_edges[i]->propagate_backward(time);
+        }
+    }
+}
+
 double RNN::calculate_error_softmax(const vector< vector<double> > &expected_outputs) {
     
     
-    double cross_entropy_sum = 0.0;
+    double cross_entropy_sum = 0.000000001;
+    double cross_entropy_time_sum = 0.000000001;
     double error;
     double softmax = 0.0;
+    cross_entropy_losses.assign(expected_outputs[0].size(),0.0);
+    //cross_entropy_losses.resize(expected_outputs[0].size());
 
     for (uint32_t i = 0; i < output_nodes.size(); i++) {
         output_nodes[i]->error_values.resize(expected_outputs[i].size());
@@ -419,52 +469,68 @@ double RNN::calculate_error_softmax(const vector< vector<double> > &expected_out
 
     // for each time step j 
     for (uint32_t j = 0; j < expected_outputs[0].size(); j++) {
-        double softmax_sum = 0.0;
-        double cross_entropy = 0.0;
+        double softmax_sum = 0.000000001;
+        double cross_entropy = 0.000000001;
+        double cross_entropy_time_sum = 0.000000001;
+
+        //find max at each timestep
+        double max_output_node_value = output_nodes[0]->output_values[j];
+        for (uint32_t i = 0; i < output_nodes.size(); i++){
+            max_output_node_value = max(max_output_node_value,output_nodes[i]->output_values[j]);
+        }
+
+        //Log::info("Max value in softmax : %f\n\n\n",max_output_node_value);
+
         // get sum of all the outputs of the timestep j from all output node i
         for (uint32_t i = 0; i < output_nodes.size(); i++) {
-            softmax_sum += exp(output_nodes[i]->output_values[j]);
+            softmax_sum += exp(output_nodes[i]->output_values[j] - max_output_node_value);
         }
 
         // for each 
 
         for (uint32_t i = 0; i < output_nodes.size(); i++) {
-            softmax = exp(output_nodes[i]->output_values[j]) / softmax_sum;
+            softmax = exp(output_nodes[i]->output_values[j] - max_output_node_value) / softmax_sum;
             error = softmax - expected_outputs[i][j];
             output_nodes[i]->error_values[j] = error;
 
-            // std::cout<<"softmax ::::: "<<error<<" "<<output_nodes[i]->output_values[j]<<" "<<expected_outputs[i][j]<<"\n"<<std::endl;
             cross_entropy = -expected_outputs[i][j] * log(softmax);
-            // if(cross_entropy)std::cout<<"cross_entropy ::::: "<<cross_entropy<<"\n"<<std::endl;
-
-            cross_entropy_sum += cross_entropy;
+            cross_entropy_time_sum += cross_entropy;
+            
         }
+        cross_entropy_sum += cross_entropy_time_sum;
+        cross_entropy_losses[j] = cross_entropy_time_sum;
+        Log::debug("Cross_Entropy_time_sum :%f\n\n", cross_entropy_time_sum);
 
+        for (uint32_t i = 0; i < output_nodes.size(); i++) {
+            
+            output_nodes[i]->error_values[j] /=cross_entropy_losses[j];
+        }
     }
 
-  return cross_entropy_sum;
+    Log::debug("Cross_Entropy_sum :%f\n\n",cross_entropy_sum);
+    return cross_entropy_sum;
 }
 
 double RNN::calculate_error_mse(const vector< vector<double> > &expected_outputs) {
     double mse_sum = 0.0;
     double mse;
     double error;
-  
+
+
     for (uint32_t i = 0; i < output_nodes.size(); i++) {
         output_nodes[i]->error_values.resize(expected_outputs[i].size());
 
         mse = 0.0;
         for (uint32_t j = 0; j < expected_outputs[i].size(); j++) {
             error = output_nodes[i]->output_values[j] - expected_outputs[i][j];
-
-          // std::cout<<"why this  ???? mse ::::: "<<error<<" "<<output_nodes[i]->output_values[j]<<" "<<expected_outputs[i][j]<<std::endl;
-
             output_nodes[i]->error_values[j] = error;
             mse += error * error;
         }
         mse_sum += mse / expected_outputs[i].size();
     }
 
+    
+
     return mse_sum;
 }
 
@@ -644,15 +710,17 @@ void RNN::get_analytic_gradient(const vector<double> &test_parameters, const vec
     set_weights(test_parameters);
     forward_pass(inputs, using_dropout, training, dropout_probability);
 
-    if (use_regression) {
+    if(use_regression) {
+        Log::trace("Using regression\n");
         mse = calculate_error_mse(outputs);
-        backward_pass(mse * (1.0 / outputs[0].size())*2.0, using_dropout, training, dropout_probability);
+        backward_pass(mse * (1.0 / outputs[0].size()) * 2.0, using_dropout, training, dropout_probability);
 
     } else {
+        Log::trace("Using classification\n");
         mse = calculate_error_softmax(outputs);
-        backward_pass(mse * (1.0 / outputs[0].size()), using_dropout, training, dropout_probability);
-    
-    }
+        //        backward_pass(mse * (1.0 / outputs[0].size()), using_dropout, training, dropout_probability);
+            backward_pass_class(1, using_dropout, training, dropout_probability);
+        }
     
     vector<double> current_gradients;
 
@@ -687,11 +755,19 @@ void RNN::get_empirical_gradient(const vector<double> &test_parameters, const ve
     empirical_gradient.assign(test_parameters.size(), 0.0);
 
     vector< vector<double> > deltas;
-
+    double original_mse = 0.0;
 
     set_weights(test_parameters);
     forward_pass(inputs, using_dropout, training, dropout_probability);
-    double original_mse = calculate_error_mse(outputs);
+
+
+    if (use_regression) {
+        Log::info("Using regression\n");
+        original_mse = calculate_error_mse(outputs);
+    } else {
+        Log::trace("Using classification\n");
+        original_mse = calculate_error_softmax(outputs);
+    }
 
     double save;
     double diff = 0.00001;
@@ -704,15 +780,27 @@ void RNN::get_empirical_gradient(const vector<double> &test_parameters, const ve
         parameters[i] = save - diff;
         set_weights(parameters);
         forward_pass(inputs, using_dropout, training, dropout_probability);
-        get_mse(this, outputs, mse1, deltas);
 
+        if (use_regression) {
+            get_mse(this,outputs,mse1,deltas);
+        } else {
+            get_se(this,outputs,mse1,deltas);
+            //Log::trace("MSE:1 = %f\n",mse1);
+        }
+        
         parameters[i] = save + diff;
         set_weights(parameters);
         forward_pass(inputs, using_dropout, training, dropout_probability);
-        get_mse(this, outputs, mse2, deltas);
-
-        empirical_gradient[i] = (mse2 - mse1) / (2.0 * diff);
-        empirical_gradient[i] *= original_mse;
+        
+        if (use_regression) {
+            get_mse(this,outputs,mse2,deltas);
+            empirical_gradient[i] = (mse2 - mse1) / (2.0 * diff);
+            empirical_gradient[i] *= original_mse;
+        } else {
+            get_se(this,outputs,mse2,deltas);
+            empirical_gradient[i] = (mse2 - mse1) / (2.0 * diff);
+        }
+        
 
         parameters[i] = save;
     }
@@ -720,7 +808,54 @@ void RNN::get_empirical_gradient(const vector<double> &test_parameters, const ve
     mse = original_mse;
 }
 
-void RNN::initialize_randomly() {
+vector<vector<double>>  RNN::get_softmax_gradient(const vector<vector<double>> &outputs, const vector<vector<double>> &expected, double &mse, vector<vector<double>> &softmax_gradient) {
+
+    softmax_gradient.assign(output_nodes.size(), vector<double>(outputs[0].size(), 0.0));
+    vector<vector<double>> deltas;
+    double original_mse = 0.0;
+
+    int timesteps = outputs[0].size();
+
+    for (uint32_t outputNode = 0; outputNode < output_nodes.size(); outputNode++) {
+        output_nodes[outputNode]->output_values.assign(timesteps, 0.0);
+    }
+
+    for (uint32_t timestep = 0; timestep < outputs[0].size(); timestep++) {
+        for (uint32_t outputNode = 0; outputNode < output_nodes.size(); outputNode++) {           
+            output_nodes[outputNode]->output_values[timestep] = outputs[outputNode][timestep];
+        }
+    }
+
+    get_se(this, expected, original_mse, deltas);
+
+    double save;
+    double diff = 0.00001;
+    double mse1, mse2;
+
+    // get gradient for each output node starting from each time step and each output node in each time step
+
+    for (uint32_t timestep = 0; timestep < outputs[0].size(); timestep++)
+    {
+        for (uint32_t outputNode = 0; outputNode < output_nodes.size(); outputNode++)
+        {
+            save = output_nodes[outputNode]->output_values[timestep];
+            output_nodes[outputNode]->output_values[timestep] = save - diff;
+            mse1 = calculate_error_softmax(expected);
+            output_nodes[outputNode]->output_values[timestep] = save + diff;
+            mse2 = calculate_error_softmax(expected);
+
+            softmax_gradient[outputNode][timestep] = (mse2 - mse1) / (2.0 * diff);
+         
+            output_nodes[outputNode]->output_values[timestep] = save;
+        }
+    }
+
+    mse = original_mse;
+    return deltas;
+}
+
+    void RNN::initialize_randomly()
+{
     int number_of_weights = get_number_weights();
     vector<double> parameters(number_of_weights, 0.0);
 
diff --git a/rnn/rnn.hxx b/rnn/rnn.hxx
index 2501276b..ab277a1f 100644
--- a/rnn/rnn.hxx
+++ b/rnn/rnn.hxx
@@ -13,13 +13,26 @@ using std::vector;
 #include "rnn_recurrent_edge.hxx"
 
 #include "time_series/time_series.hxx"
-#include "word_series/word_series.hxx"
+#include "character_series/character_series.hxx"
 
 class RNN {
     private:
+
+        /**
+        *   Specifies the length of the dataset.   
+        *   It can be the number of the files in case of time series or number of batches in case of word series
+        */
         int series_length;
+        
+        /**
+        *   Specifies whether to use the regression or not.   
+        *   It will use regression in case of time series and will not use regression in case of word series
+        */
+
         bool use_regression;
 
+        vector<double> cross_entropy_losses;
+
         vector<RNN_Node_Interface*> input_nodes;
         vector<RNN_Node_Interface*> output_nodes;
 
@@ -43,11 +56,32 @@ class RNN {
 
         void forward_pass(const vector< vector<double> > &series_data, bool using_dropout, bool training, double dropout_probability);
         void backward_pass(double error, bool using_dropout, bool training, double dropout_probability);
-
+        void backward_pass_class(double error, bool using_dropout, bool training, double dropout_probability);
+
+            /**
+        *   Calculates the sum of cross entropy error by comparing the expected outputs and the predicted outputs.    
+        *   
+        *   \param expected_outputs is the expected outputs according the dataset.
+        *   
+        *   \return sum of the cross entropy error. 
+        */
         double calculate_error_softmax(const vector< vector<double> > &expected_outputs);
         double calculate_error_mse(const vector< vector<double> > &expected_outputs);
         double calculate_error_mae(const vector< vector<double> > &expected_outputs);
 
+        
+        
+        /**
+        *   Calls the calculate_error_softmax after the forward pass across the rnn genome.       
+        *
+        *   \param series_data is the dataset used for the forward pass.
+        *   \param expected_outputs is the expected outputs according to the dataset.
+        *   \param using_dropout is the probability for the node being disabled while forward pass training and not during testing.   
+        *   \param training is to specify whether it is training stage or not to use dropout.
+        *   \param dropout_probability is the probability by which the the nodes will be disabled. will not work during testing stage and without use_droput = true.
+        *   
+        *   \return sum of the cross entropy error over the dataset. 
+        */       
         double prediction_softmax(const vector< vector<double> > &series_data, const vector< vector<double> > &expected_outputs, bool using_dropout, bool training, double dropout_probability);
         double prediction_mse(const vector< vector<double> > &series_data, const vector< vector<double> > &expected_outputs, bool using_dropout, bool training, double dropout_probability);
         double prediction_mae(const vector< vector<double> > &series_data, const vector< vector<double> > &expected_outputs, bool using_dropout, bool training, double dropout_probability);
@@ -65,13 +99,29 @@ class RNN {
 
         uint32_t get_number_weights();
 
+
+         /**
+        *   Updates the analytic gradients after the forward pass across the rnn genome and the backward pass sequentially.       
+        *
+        *   \param test_parameters is the dataset parameters used for the forward pass.
+        *   \param inputs are the inputs according to the dataset that is pass to the for forward pass.
+        *   \param outputs are the expected outputs according to the dataset that is pass to the calculate error for backward pass.
+        *   \param analytic_gradients are the current gradients in the rnn genome that are going to be update after a single pass across the rnn genome.
+        *   \param using_dropout is the probability for the node being disabled while forward pass training and not during testing.   
+        *   \param training is to specify whether it is training stage or not to use dropout.
+        *   \param dropout_probability is the probability by which the the nodes will be disabled. will not work during testing stage and without use_droput = true.
+        *   
+        *   \return sum of the cross entropy error over the dataset. 
+        */ 
         void get_analytic_gradient(const vector<double> &test_parameters, const vector< vector<double> > &inputs, const vector< vector<double> > &outputs, double &mse, vector<double> &analytic_gradient, bool using_dropout, bool training, double dropout_probability);
         void get_empirical_gradient(const vector<double> &test_parameters, const vector< vector<double> > &inputs, const vector< vector<double> > &outputs, double &mae, vector<double> &empirical_gradient, bool using_dropout, bool training, double dropout_probability);
+        vector< vector<double> > get_softmax_gradient(const vector< vector<double> > &outputs, const vector< vector<double> > &expected, double &mse, vector< vector<double> > &softmax_gradient);
 
         //RNN* copy();
 
-        friend void get_mse(RNN* genome, const vector< vector<double> > &expected, double &mse, vector< vector<double> > &deltas);
-        friend void get_mae(RNN* genome, const vector< vector<double> > &expected, double &mae, vector< vector<double> > &deltas);
+        friend void get_mse(RNN * genome, const vector<vector<double>> &expected, double &mse_sum, vector<vector<double>> &deltas);
+        friend void get_mae(RNN * genome, const vector<vector<double>> &expected, double &mae_sum, vector<vector<double>> &deltas);
+        friend void get_se(RNN * genome, const vector<vector<double>> &expected, double &ce_sum, vector<vector<double>> &deltas);
 };
 
 #endif
diff --git a/rnn/rnn_genome.cxx b/rnn/rnn_genome.cxx
index 3d114937..3a00bc63 100644
--- a/rnn/rnn_genome.cxx
+++ b/rnn/rnn_genome.cxx
@@ -900,9 +900,11 @@ void RNN_Genome::get_analytic_gradient(vector<RNN*> &rnns, const vector<double>
     vector<thread> threads;
     for (uint32_t i = 0; i < rnns.size(); i++) {
         if(use_regression) {
+            
             threads.push_back( thread(forward_pass_thread_regression, rnns[i], parameters, inputs[i], outputs[i], i, mses, use_dropout, training, dropout_probability) );
 
         } else {
+            
             threads.push_back( thread(forward_pass_thread_classification, rnns[i], parameters, inputs[i], outputs[i], i, mses, use_dropout, training, dropout_probability) );
 
         }
@@ -917,11 +919,15 @@ void RNN_Genome::get_analytic_gradient(vector<RNN*> &rnns, const vector<double>
     for (uint32_t i = 0; i < rnns.size(); i++) {
         double d_mse = 0.0;
         if (use_regression) {
-            d_mse = mse_sum * (1.0 / outputs[i][0].size()) * 2.0;   
+            Log::info("Using regression\n");
+            d_mse = mse_sum * (1.0 / outputs[i][0].size()) * 2.0;
+            rnns[i]->backward_pass(d_mse, use_dropout, training, dropout_probability);
         } else {
-            d_mse = mse_sum * (1.0 / outputs[i][0].size());
+            Log::info("Using classification\n");
+            d_mse = 1;
+            rnns[i]->backward_pass_class(d_mse, use_dropout, training, dropout_probability);
         }
-        rnns[i]->backward_pass(d_mse, use_dropout, training, dropout_probability);
+        
 
         //double d_mae = mse_sum * (1.0 / outputs[i][0].size());
         //rnns[i]->backward_pass(d_mae);
@@ -961,9 +967,9 @@ void RNN_Genome::backpropagate(const vector< vector< vector<double> > > &inputs,
     int32_t n_series = inputs.size();
     vector<RNN*> rnns;
     for (int32_t i = 0; i < n_series; i++) {
-        RNN* r = this->get_rnn();
-        r->enable_use_regression(use_regression);
-        rnns.push_back( this->get_rnn() );
+        RNN* rnn = this->get_rnn();
+        rnn->enable_use_regression(use_regression);
+        rnns.push_back(rnn);
     }
 
     vector<double> parameters = initial_parameters;
@@ -1028,8 +1034,10 @@ void RNN_Genome::backpropagate(const vector< vector< vector<double> > > &inputs,
 
         this->set_weights(parameters);
         if (use_regression) {
+            Log::info("Using regression\n");
             validation_mse = get_mse(parameters, validation_inputs, validation_outputs);
         } else {
+            Log::info("Using classification\n");
             validation_mse = get_softmax(parameters, validation_inputs, validation_outputs);
         }
         if (validation_mse < best_validation_mse) {
@@ -1220,8 +1228,18 @@ void RNN_Genome::backpropagate_stochastic(const vector< vector< vector<double> >
     Log::trace("initialized previous values.\n");
 
     //TODO: need to get validation mse on the RNN not the genome
-    double validation_mse = get_mse(parameters, validation_inputs, validation_outputs);
-    best_validation_mse = validation_mse;
+
+    double validation_mse = 0;
+     if (use_regression) {
+         Log::info("Using regression\n");
+         validation_mse = get_mse(parameters, validation_inputs, validation_outputs);
+         best_validation_mse = validation_mse;
+    }
+    else {
+        Log::info("Using classification\n");
+        validation_mse = get_softmax(parameters, validation_inputs, validation_outputs);
+        best_validation_mse = validation_mse;
+    }
     best_validation_mae = get_mae(parameters, validation_inputs, validation_outputs);
     best_parameters = parameters;
 
diff --git a/rnn/rnn_genome.hxx b/rnn/rnn_genome.hxx
index 761c4558..709d4bac 100644
--- a/rnn/rnn_genome.hxx
+++ b/rnn/rnn_genome.hxx
@@ -27,7 +27,7 @@ using std::vector;
 #include "common/random.hxx"
 #include "common/weight_initialize.hxx"
 #include "time_series/time_series.hxx"
-#include "word_series/word_series.hxx"
+#include "character_series/character_series.hxx"
 
 //mysql can't handle the max float value for some reason
 #define EXAMM_MAX_DOUBLE 10000000
@@ -50,6 +50,11 @@ class RNN_Genome {
         bool use_low_norm;
         double low_threshold;
 
+        /**
+        *   Specifies whether to use the regression or not.   
+        *   It will use regression in case of time series and will not use regression in case of word series
+        */
+
         bool use_regression;
 
         bool use_dropout;
@@ -67,7 +72,11 @@ class RNN_Genome {
 
         vector<double> initial_parameters;
 
-        
+        /**
+        *   Specifies the validation error across the dataset.   
+        *   It will use mean squared error when regression in case of time series and cross entropy loss when regression not used in case of word series
+        */
+
         double best_validation_mse;
         double best_validation_mae;
         vector<double> best_parameters;
@@ -127,7 +136,16 @@ class RNN_Genome {
         int32_t get_enabled_node_count();
         int32_t get_node_count();
 
+
+        /**
+        *   Calculates the fitness of the rnn genome across the dataset.    
+        *   This will be the mean squared error in case of regression and cross entropy loss in case of classification.
+        *   
+        *   \return MSE or SOFTMAX ERROR. 
+        */
         double get_fitness() const;
+
+
         double get_best_validation_softmax() const; 
         double get_best_validation_mse() const;
         double get_best_validation_mae() const;
@@ -206,6 +224,16 @@ class RNN_Genome {
 
         void backpropagate_stochastic(const vector< vector< vector<double> > > &inputs, const vector< vector< vector<double> > > &outputs, const vector< vector< vector<double> > > &validation_inputs, const vector< vector< vector<double> > > &validation_outputs);
 
+
+        /**
+        *   Predicts the softmax error after a single pass across the rnn genome.       
+        *
+        *   \param parameters is the parameters such as dropout, momentum type used for the forward pass.
+        *   \param inputs are the inputs according to the dataset that is pass to the for forward pass.
+        *   \param outputs are the expected outputs according to the dataset that is pass to the calculate error for backward pass.
+        *   
+        *   \return average of the cross entropy error over the dataset. 
+        */ 
         double get_softmax(const vector<double> &parameters, const vector< vector< vector<double> > > &inputs, const vector< vector< vector<double> > > &outputs);
         double get_mse(const vector<double> &parameters, const vector< vector< vector<double> > > &inputs, const vector< vector< vector<double> > > &outputs);
         double get_mae(const vector<double> &parameters, const vector< vector< vector<double> > > &inputs, const vector< vector< vector<double> > > &outputs);
@@ -213,6 +241,19 @@ class RNN_Genome {
 
         vector< vector<double> > get_predictions(const vector<double> &parameters, const vector< vector< vector<double> > > &inputs, const vector< vector< vector<double> > > &outputs);
         void write_predictions(string output_directory, const vector<string> &input_filenames, const vector<double> &parameters, const vector< vector< vector<double> > > &inputs, const vector< vector< vector<double> > > &outputs, TimeSeriesSets *time_series_sets);
+        
+        /**
+        *   Predicts the cross entropy loss after a single pass across the rnn genome.       
+        *
+        *   \param output_directory is the file directory that contains all the output files.
+        *   \param inputs_filenames are the inputs files according to the dataset that is pass to the for forward pass.
+        *   \param inputs are the inputs according to the dataset that is pass to the for forward pass.        
+        *   \param outputs are the expected outputs according to the dataset that is pass to the calculate error for backward pass.
+        *   \param parameters is the parameters such as dropout, momentum type used for the forward pass.
+        *   \param word_series_sets is the Corpus from the word series dataset.
+        *   
+        *   Calls the write predictions from the rnn class.  
+        */ 
         void write_predictions(string output_directory, const vector<string> &input_filenames, const vector<double> &parameters, const vector< vector< vector<double> > > &inputs, const vector< vector< vector<double> > > &outputs, Corpus * word_series_sets);
 
         void get_mu_sigma(const vector<double> &p, double &mu, double &sigma);
diff --git a/rnn/rnn_node_interface.cxx b/rnn/rnn_node_interface.cxx
index b1f0b06b..3853beed 100644
--- a/rnn/rnn_node_interface.cxx
+++ b/rnn/rnn_node_interface.cxx
@@ -15,8 +15,8 @@ using std::max;
 #include "common/log.hxx"
 
 
-extern const int32_t NUMBER_NODE_TYPES = 9;
-extern const string NODE_TYPES[] = { "simple" , "jordan", "elman", "UGRNN", "MGU", "GRU", "delta", "LSTM" , "ENARC" , "ENAS_DAG" };
+extern const int32_t NUMBER_NODE_TYPES = 11;
+extern const string NODE_TYPES[] = { "simple" , "jordan", "elman", "UGRNN", "MGU", "GRU", "delta", "LSTM" , "ENARC" , "ENAS_DAG" , "RANDOM_DAG"};
 
 double bound(double value) {
     if (value < -10.0) value = -10.0;
diff --git a/rnn/rnn_node_interface.hxx b/rnn/rnn_node_interface.hxx
index a5d7c6f1..1b08c41b 100644
--- a/rnn/rnn_node_interface.hxx
+++ b/rnn/rnn_node_interface.hxx
@@ -20,35 +20,111 @@ using std::vector;
 
 class RNN;
 
-#define INPUT_LAYER 0
-#define HIDDEN_LAYER 1
-#define OUTPUT_LAYER 2
+#define INPUT_LAYER 0   /**< Specifices the Input Layer of the rnn network. */
+#define HIDDEN_LAYER 1  /**< Specifices the Hidden Layer of the rnn network. */
+#define OUTPUT_LAYER 2  /**< Specifices the Output Layer of the rnn network. */
 
 extern const int32_t NUMBER_NODE_TYPES;
 extern const string NODE_TYPES[];
 
-#define SIMPLE_NODE 0
-#define JORDAN_NODE 1
-#define ELMAN_NODE 2
-#define UGRNN_NODE 3
-#define MGU_NODE 4
-#define GRU_NODE 5
-#define DELTA_NODE 6
-#define LSTM_NODE 7
-#define ENARC_NODE 8
-#define ENAS_DAG_NODE 9
-#define RANDOM_DAG_NODE 10
+#define SIMPLE_NODE 0  /**< Specifices the rnn network to use the Simple Node as the memory cell. */
+#define JORDAN_NODE 1  /**< Specifices the rnn network to use the Jordan Node as the memory cell. */
+#define ELMAN_NODE 2  /**< Specifices the rnn network to use the Elman Node as the memory cell. */
+#define UGRNN_NODE 3  /**< Specifices the rnn network to use the UGRNN Node as the memory cell. */
+#define MGU_NODE 4  /**< Specifices the rnn network to use the MGU Node as the memory cell. */
+#define GRU_NODE 5  /**< Specifices the rnn network to use the GRU Node as the memory cell. */
+#define DELTA_NODE 6  /**< Specifices the rnn network to use the Delta Node as the memory cell. */
+#define LSTM_NODE 7  /**< Specifices the rnn network to use the LSTM Node as the memory cell. */
+#define ENARC_NODE 8  /**< Specifices the rnn network to use the ENARC Node as the memory cell. */
+#define ENAS_DAG_NODE 9  /**< Specifices the rnn network to use the ENAS_DAG Node as the memory cell. */
+#define RANDOM_DAG_NODE 10  /**< Specifices the rnn network to use the Random_DAG Node as the memory cell. */
+
+
+
+/**
+ * Gives the sigmoid of the value to apply non-linearity in the network.
+ *
+ * \param value is the output of the node after multiplying with weights. 
+ *
+ * \return sigmoid of the value
+ */
+double sigmoid(double value);
 
+/**
+ * Gives the swish  = (identity * sigmoid) of the value to apply non-linearity in the network.
+ *
+ * \param value is the output of the node after multiplying with weights. 
+ *
+ * \return swish of the value
+ */
 
+double swish(double value);
+
+/**
+ * Gives the leakyReLU of the value to apply non-linearity in the network. 
+ *
+ * \param value is the output of the node after multiplying with weights. 
+ *
+ * \return LeakyReLU of the value
+ */
+
+double leakyReLU(double value);
+
+/**
+ * Gives the identity of the value. Linearlty is preserved in this case.
+ *
+ * \param value is the output of the node after multiplying with weights. 
+ *
+ * \return value
+ */
+
+double identity(double value);
+
+
+/**
+ * Gives the sigmoid derivative of the value used during the backward pass.
+ *
+ * \param value is the output of the node after multiplying with weights. 
+ *
+ * \return sigmoid derivative of the value
+ */
 
-double sigmoid(double value);
 double sigmoid_derivative(double value);
+
+/**
+ * Gives the tanh derivative of the value used during the backward pass.
+ *
+ * \param value is the output of the node after multiplying with weights. 
+ *
+ * \return tanh derivative of the value
+ */
+
 double tanh_derivative(double value);
-double swish(double value);
+
+/**
+ * Gives the swish derivative of the value used during the backward pass.
+ *
+ * \param input is the input of the node before multiplying with weights. 
+ * \param value is the output of the node after multiplying with weights. 
+ *
+ * \return swish derivative
+ */
 double swish_derivative(double value, double input);
-double leakyReLU(double value);
+
+/**
+ * Gives the leakyReLU derivative of the value used during the backward pass.
+ *
+ * \param input is the output of the node after multiplying with weights. 
+ *
+ * \return leakyReLU derivative of the input
+ */
 double leakyReLU_derivative(double input);
-double identity(double value);
+
+/**
+ * Gives the derivative of the identity used during the backward pass.
+ *
+ * \return unit
+ */
 double identity_derivative();
 
 
@@ -131,6 +207,7 @@ class RNN_Node_Interface {
 
         friend void get_mse(RNN* genome, const vector< vector<double> > &expected, double &mse, vector< vector<double> > &deltas);
         friend void get_mae(RNN* genome, const vector< vector<double> > &expected, double &mae, vector< vector<double> > &deltas);
+        friend void get_se(RNN *genome, const vector<vector<double>> &expected, double &mae, vector<vector<double>> &deltas);
 };
 
 
diff --git a/rnn_examples/CMakeLists.txt b/rnn_examples/CMakeLists.txt
index df8f19ac..27ea355b 100644
--- a/rnn_examples/CMakeLists.txt
+++ b/rnn_examples/CMakeLists.txt
@@ -1,18 +1,16 @@
 add_executable(jordan_rnn jordan_rnn)
-target_link_libraries(jordan_rnn examm_strategy exact_common exact_time_series exact_word_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
+target_link_libraries(jordan_rnn examm_strategy exact_common exact_time_series exact_character_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
 
 add_executable(train_rnn train_rnn)
-target_link_libraries(train_rnn examm_strategy exact_common exact_time_series exact_word_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
+target_link_libraries(train_rnn examm_strategy exact_common exact_time_series exact_character_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} ${TIFF_LIBRARIES} pthread)
 
-add_executable(rnn_heatmap rnn_heatmap)
-target_link_libraries(rnn_heatmap examm_strategy exact_common exact_time_series exact_word_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} pthread)
 
 add_executable(evaluate_rnn evaluate_rnn)
-target_link_libraries(evaluate_rnn examm_strategy exact_common exact_time_series exact_word_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(evaluate_rnn examm_strategy exact_common exact_time_series exact_character_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} pthread)
 
 add_executable(evaluate_rnns_multi_offset evaluate_rnns_multi_offset)
-target_link_libraries(evaluate_rnns_multi_offset examm_strategy exact_common exact_time_series exact_word_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(evaluate_rnns_multi_offset examm_strategy exact_common exact_time_series exact_character_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} pthread)
 
 add_executable(rnn_statistics rnn_statistics)
-target_link_libraries(rnn_statistics examm_strategy exact_common exact_time_series exact_word_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(rnn_statistics examm_strategy exact_common exact_time_series exact_character_series ${MPI_LIBRARIES} ${MPI_EXTRA} ${MYSQL_LIBRARIES} pthread)
 
diff --git a/rnn_examples/rnn_heatmap.cxx b/rnn_examples/rnn_heatmap.cxx
deleted file mode 100644
index 95004058..00000000
--- a/rnn_examples/rnn_heatmap.cxx
+++ /dev/null
@@ -1,167 +0,0 @@
-//example usage:
-//  ./rnn_examples/rnn_heatmap --std_message_level info --file_message_level none --output_directory ./ --input_directory ~/Dropbox/microbeam_cbm/Cyclone_binaries/120_min/ --testing_directory ~/Dropbox/microbeam_cbm/2019_08-09_data/ --time_offset 120
-#include <chrono>
-
-#include <condition_variable>
-using std::condition_variable;
-
-#include <filesystem>
-namespace fs = std::filesystem;
-
-#include <iomanip>
-using std::setw;
-
-#include <mutex>
-using std::mutex;
-
-#include <string>
-using std::string;
-
-#include <thread>
-using std::thread;
-
-#include <vector>
-using std::vector;
-
-#include "common/arguments.hxx"
-#include "common/log.hxx"
-
-#include "rnn/rnn_genome.hxx"
-
-#include "time_series/time_series.hxx"
-
-
-vector<string> arguments;
-
-vector< vector< vector<double> > > testing_inputs;
-vector< vector< vector<double> > > testing_outputs;
-
-int main(int argc, char** argv) {
-    arguments = vector<string>(argv, argv + argc);
-
-    Log::initialize(arguments);
-    Log::set_id("main");
-
-    string input_directory;
-    get_argument(arguments, "--input_directory", true, input_directory);
-
-    string testing_directory;
-    get_argument(arguments, "--testing_directory", true, testing_directory);
-
-    string output_directory;
-    get_argument(arguments, "--output_directory", true, output_directory);
-
-    int32_t time_offset = 1;
-    get_argument(arguments, "--time_offset", true, time_offset);
-
-    Log::info("input directory: '%s'\n", input_directory.c_str());
-    Log::info("testing directory: '%s'\n", testing_directory.c_str());
-    Log::info("output directory: '%s'\n", output_directory.c_str());
-
-    string output_filename = output_directory + "heatmap_output.csv";
-    ofstream output_file(output_filename);
-
-    for (int cyclone = 1; cyclone <= 12; cyclone++) {
-        string cyclone_directory = input_directory + "cyclone_" + to_string(cyclone);
-        Log::info("analyzing cyclone %d with directory: '%s'\n", cyclone, cyclone_directory.c_str());
-
-        for (int target_cyclone = 1; target_cyclone <= 12; target_cyclone++) {
-            double average_mae = 0.0;
-
-            for (int repeat = 0; repeat < 20; repeat++) {
-                string repeat_directory = cyclone_directory + "/" + to_string(repeat);
-                Log::trace("\tgetting genome file from repeat directory: '%s'\n", repeat_directory.c_str());
-
-                string genome_filename = "";
-                for (const auto &entry : fs::directory_iterator(repeat_directory)) {
-                    Log::trace("\t\trepeat directory entry: '%s'\n", entry.path().c_str());
-
-                    string path = entry.path();
-                    if (path.find("rnn_genome") != std::string::npos) {
-                        Log::trace("\t\tgot genome file: '%s'\n", path.c_str());
-                        genome_filename = path;
-                        break;
-                    }
-                }
-
-                Log::info("\tgenome filename: '%s'\n", genome_filename.c_str());
-                RNN_Genome *genome = new RNN_Genome(genome_filename);
-
-
-                string testing_filename = testing_directory + "/cyclone_" + to_string(target_cyclone) + "_test.csv";
-
-                vector<string> testing_filenames;
-                testing_filenames.push_back(testing_filename);
-
-                TimeSeriesSets *time_series_sets = TimeSeriesSets::generate_test(testing_filenames, genome->get_input_parameter_names(), genome->get_output_parameter_names());
-                Log::debug("got time series sets.\n");
-
-                string normalize_type = genome->get_normalize_type();
-                if (normalize_type.compare("min_max") == 0) {
-                    time_series_sets->normalize_min_max(genome->get_normalize_mins(), genome->get_normalize_maxs());
-                } else if (normalize_type.compare("avg_std_dev") == 0) {
-                    time_series_sets->normalize_avg_std_dev(genome->get_normalize_avgs(), genome->get_normalize_std_devs(), genome->get_normalize_mins(), genome->get_normalize_maxs());
-                }
-
-                Log::info("normalized type: %s \n", normalize_type.c_str());
-
-                time_series_sets->export_test_series(time_offset, testing_inputs, testing_outputs);
-
-                vector<double> best_parameters = genome->get_best_parameters();
-
-                //Log::info("MSE: %lf\n", genome->get_mse(best_parameters, testing_inputs, testing_outputs));
-                //Log::info("MAE: %lf\n", genome->get_mae(best_parameters, testing_inputs, testing_outputs));
-                double mae = genome->get_mae(best_parameters, testing_inputs, testing_outputs);
-
-                cout << "MAE: " << mae << endl;
-
-                average_mae += mae;
-
-                delete time_series_sets;
-                delete genome;
-            }
-
-            if (target_cyclone > 1) output_file << ",";
-            average_mae /= 20.0;
-            output_file << average_mae;
-
-            cout << "average MAE: " << average_mae << endl << endl;
-        }
-        output_file << endl;
-    }
-
-
-    /*
-    string genome_filename;
-    get_argument(arguments, "--genome_file", true, genome_filename);
-    RNN_Genome *genome = new RNN_Genome(genome_filename);
-
-    vector<string> testing_filenames;
-    get_argument_vector(arguments, "--testing_filenames", true, testing_filenames);
-
-    TimeSeriesSets *time_series_sets = TimeSeriesSets::generate_test(testing_filenames, genome->get_input_parameter_names(), genome->get_output_parameter_names());
-    Log::debug("got time series sets.\n");
-
-    string normalize_type = genome->get_normalize_type();
-    if (normalize_type.compare("min_max") == 0) {
-        time_series_sets->normalize_min_max(genome->get_normalize_mins(), genome->get_normalize_maxs());
-    } else if (normalize_type.compare("avg_std_dev") == 0) {
-        time_series_sets->normalize_avg_std_dev(genome->get_normalize_avgs(), genome->get_normalize_std_devs(), genome->get_normalize_mins(), genome->get_normalize_maxs());
-    }
-    
-    Log::info("normalized type: %s \n", normalize_type.c_str());
-
-    int32_t time_offset = 1;
-    get_argument(arguments, "--time_offset", true, time_offset);
-
-    time_series_sets->export_test_series(time_offset, testing_inputs, testing_outputs);
-
-    vector<double> best_parameters = genome->get_best_parameters();
-    Log::info("MSE: %lf\n", genome->get_mse(best_parameters, testing_inputs, testing_outputs));
-    Log::info("MAE: %lf\n", genome->get_mae(best_parameters, testing_inputs, testing_outputs));
-    genome->write_predictions(output_directory, testing_filenames, best_parameters, testing_inputs, testing_outputs, time_series_sets);
-    */
-
-    Log::release_id("main");
-    return 0;
-}
diff --git a/rnn_tests/CMakeLists.txt b/rnn_tests/CMakeLists.txt
index 46afcebe..abdf22e4 100644
--- a/rnn_tests/CMakeLists.txt
+++ b/rnn_tests/CMakeLists.txt
@@ -1,32 +1,39 @@
 add_executable(test_feed_forward_gradients test_feed_forward_gradients gradient_test)
-target_link_libraries(test_feed_forward_gradients examm_strategy exact_common exact_time_series exact_word_series  ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_feed_forward_gradients examm_strategy exact_common exact_time_series exact_character_series  ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_elman_gradients test_elman_gradients gradient_test)
-target_link_libraries(test_elman_gradients examm_strategy exact_common exact_time_series exact_word_series  ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_elman_gradients examm_strategy exact_common exact_time_series exact_character_series  ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_jordan_gradients test_jordan_gradients gradient_test)
-target_link_libraries(test_jordan_gradients examm_strategy exact_common exact_time_series exact_word_series  ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_jordan_gradients examm_strategy exact_common exact_time_series exact_character_series  ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_delta_gradients test_delta_gradients gradient_test)
-target_link_libraries(test_delta_gradients examm_strategy exact_common exact_time_series exact_word_series  ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_delta_gradients examm_strategy exact_common exact_time_series exact_character_series  ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_ugrnn_gradients test_ugrnn_gradients gradient_test)
-target_link_libraries(test_ugrnn_gradients examm_strategy exact_common exact_time_series exact_word_series  ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_ugrnn_gradients examm_strategy exact_common exact_time_series exact_character_series  ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_gru_gradients test_gru_gradients gradient_test)
-target_link_libraries(test_gru_gradients examm_strategy exact_common exact_time_series exact_word_series  ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_gru_gradients examm_strategy exact_common exact_time_series exact_character_series  ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_mgu_gradients test_mgu_gradients gradient_test)
-target_link_libraries(test_mgu_gradients examm_strategy exact_common exact_time_series exact_word_series  ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_mgu_gradients examm_strategy exact_common exact_time_series exact_character_series  ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_lstm_gradients test_lstm_gradients gradient_test)
-target_link_libraries(test_lstm_gradients examm_strategy exact_common exact_time_series exact_word_series ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_lstm_gradients examm_strategy exact_common exact_time_series exact_character_series ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_enarc_gradients test_enarc_gradients gradient_test)
-target_link_libraries(test_enarc_gradients examm_strategy exact_common exact_time_series exact_word_series ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_enarc_gradients examm_strategy exact_common exact_time_series exact_character_series ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_random_dag_gradients test_random_dag_gradients gradient_test)
-target_link_libraries(test_random_dag_gradients examm_strategy exact_common exact_time_series exact_word_series ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_random_dag_gradients examm_strategy exact_common exact_time_series exact_character_series ${MYSQL_LIBRARIES} pthread)
 
 add_executable(test_enas_dag_gradients test_enas_dag_gradients gradient_test)
-target_link_libraries(test_enas_dag_gradients examm_strategy exact_common exact_time_series exact_word_series ${MYSQL_LIBRARIES} pthread)
+target_link_libraries(test_enas_dag_gradients examm_strategy exact_common exact_time_series exact_character_series ${MYSQL_LIBRARIES} pthread)
+
+add_executable(test_softmax_output test_softmax_output gradient_test)
+target_link_libraries(test_softmax_output examm_strategy exact_common exact_time_series exact_character_series ${MYSQL_LIBRARIES} pthread)
+
+add_executable(test_softmax_gradient test_softmax_gradient gradient_test)
+target_link_libraries(test_softmax_gradient examm_strategy exact_common exact_time_series exact_character_series ${MYSQL_LIBRARIES} pthread)
+
diff --git a/rnn_tests/gradient_test.cxx b/rnn_tests/gradient_test.cxx
index c56f8f0e..1f641b13 100644
--- a/rnn_tests/gradient_test.cxx
+++ b/rnn_tests/gradient_test.cxx
@@ -7,6 +7,7 @@ using std::ifstream;
 #include <random>
 using std::minstd_rand0;
 using std::uniform_real_distribution;
+using std::uniform_int_distribution;
 
 #include <string>
 using std::string;
@@ -49,6 +50,35 @@ void generate_random_vector(int number_parameters, vector<double> &v) {
 	}
 }
 
+void generate_random_oneHot_vector(int number_parameters, vector<double> &v) {
+	uniform_int_distribution<int> dist(0,number_parameters);
+	v.resize(number_parameters,0);
+	int index = dist(generator);
+	v[index] = 1.0;
+}
+
+void generate_random_oneHot_matrix(int timesteps, int number_parameters, vector<vector<double>> &v) {
+
+	for (int32_t j = 0; j < timesteps; j++) {
+		uniform_int_distribution<int> dist(0, number_parameters-1);
+		int i = dist(generator);
+		v[i][j] = 1.0;
+	}
+
+}
+
+void generate_random_matrix(int timesteps, int number_parameters, vector<vector<double>> &v)
+{
+
+	for (int32_t j = 0; j < timesteps; j++)
+	{
+		for (int32_t i = 0; i < number_parameters; i++)
+		{
+			v[i][j] = rng(generator);
+		}
+	}
+}
+
 void gradient_test(string name, RNN_Genome *genome, const vector< vector<double> > &inputs, const vector< vector<double> > &outputs) {
 	double analytic_mse, empirical_mse;
 	vector<double> parameters;
@@ -61,6 +91,7 @@ void gradient_test(string name, RNN_Genome *genome, const vector< vector<double>
 
     Log::debug("got genome \n");
 
+    rnn->enable_use_regression(true);
 
 	for (int32_t i = 0; i < test_iterations; i++) {
         if (i == 0) Log::debug_no_header("\n");
@@ -100,3 +131,69 @@ void gradient_test(string name, RNN_Genome *genome, const vector< vector<double>
         Log::info("SOME FAILED!\n");
     }
 }
+
+void gradient_test_class(string name, RNN_Genome *genome, const vector<vector<double>> &inputs, const vector<vector<double>> &outputs)
+{
+	double analytic_mse, empirical_mse;
+	vector<double> parameters;
+	vector<double> analytic_gradient, empirical_gradient;
+
+	Log::info("\ttesting gradient on '%s'...\n", name.c_str());
+	bool failed = false;
+
+	RNN *rnn = genome->get_rnn();
+
+	Log::debug("got genome \n");
+
+	rnn->enable_use_regression(false);
+
+	for (int32_t i = 0; i < test_iterations; i++)
+	{
+		if (i == 0)
+			Log::debug_no_header("\n");
+		Log::debug("\tAttempt %d\n", i);
+
+		generate_random_vector(rnn->get_number_weights(), parameters);
+		Log::debug("DEBUG: firing weights are %d \n", rnn->get_number_weights());
+
+		rnn->get_analytic_gradient(parameters, inputs, outputs, analytic_mse, analytic_gradient, false, true, 0.0);
+		rnn->get_empirical_gradient(parameters, inputs, outputs, empirical_mse, empirical_gradient, false, true, 0.0);
+
+		bool iteration_failed = false;
+
+		for (uint32_t j = 0; j < analytic_gradient.size(); j++)
+		{
+			double difference = analytic_gradient[j] - empirical_gradient[j];
+
+			if (fabs(difference) > 10e-10)
+			{
+				failed = true;
+				iteration_failed = true;
+				Log::info("\t\tFAILED analytic gradient[%d]: %lf, empirical gradient[%d]: %lf, difference: %lf\n", j, analytic_gradient[j], j, empirical_gradient[j], difference);
+				//exit(1);
+			}
+			else
+			{
+				Log::debug("\t\tPASSED analytic gradient[%d]: %lf, empirical gradient[%d]: %lf, difference: %lf\n", j, analytic_gradient[j], j, empirical_gradient[j], difference);
+			}
+		}
+
+		if (iteration_failed)
+		{
+			Log::info("\tITERATION %d FAILED!\n\n", i);
+		}
+		else
+		{
+			Log::debug("\tITERATION %d PASSED!\n\n", i);
+		}
+	}
+
+	if (!failed)
+	{
+		Log::info("ALL PASSED!\n");
+	}
+	else
+	{
+		Log::info("SOME FAILED!\n");
+	}
+}
diff --git a/rnn_tests/gradient_test.hxx b/rnn_tests/gradient_test.hxx
index 51645eed..3b9fb96e 100644
--- a/rnn_tests/gradient_test.hxx
+++ b/rnn_tests/gradient_test.hxx
@@ -31,7 +31,11 @@ using std::vector;
 
 void initialize_generator();
 void generate_random_vector(int number_parameters, vector<double> &v);
+void generate_random_oneHot_vector(int number_parameters, vector<double> &v);
+void generate_random_oneHot_matrix(int timesteps, int number_parameters, vector<vector<double>> &v);
+void generate_random_matrix(int timesteps, int number_parameters, vector<vector<double>> &v);
 
-void gradient_test(string name, RNN_Genome *genome, const vector< vector<double> > &inputs, const vector< vector<double> > &outputs);
+void gradient_test(string name, RNN_Genome *genome, const vector<vector<double>> &inputs, const vector<vector<double>> &outputs);
+void gradient_test_class(string name, RNN_Genome *genome, const vector<vector<double>> &inputs, const vector<vector<double>> &outputs);
 
 #endif
diff --git a/rnn_tests/test_enarc_gradients.cxx b/rnn_tests/test_enarc_gradients.cxx
index f21d9f1d..b413d6d4 100644
--- a/rnn_tests/test_enarc_gradients.cxx
+++ b/rnn_tests/test_enarc_gradients.cxx
@@ -59,7 +59,7 @@ int main(int argc, char **argv) {
     }
 
 
-    for (int32_t max_recurrent_depth = 1; max_recurrent_depth <= 5; max_recurrent_depth++) {
+    for (int32_t max_recurrent_depth = 1; max_recurrent_depth <= 2; max_recurrent_depth++) {
         Log::info("testing with max recurrent depth: %d\n", max_recurrent_depth);
 
         inputs.resize(1);
diff --git a/rnn_tests/test_softmax_gradient.cxx b/rnn_tests/test_softmax_gradient.cxx
new file mode 100644
index 00000000..690b3157
--- /dev/null
+++ b/rnn_tests/test_softmax_gradient.cxx
@@ -0,0 +1,123 @@
+#include <chrono>
+
+#include <fstream>
+using std::getline;
+using std::ifstream;
+
+#include <random>
+using std::minstd_rand0;
+using std::uniform_real_distribution;
+
+#include <string>
+using std::string;
+
+#include <vector>
+using std::vector;
+
+#include "common/arguments.hxx"
+#include "common/log.hxx"
+#include "common/weight_initialize.hxx"
+
+#include "rnn/delta_node.hxx"
+#include "rnn/enarc_node.hxx"
+#include "rnn/enas_dag_node.hxx"
+#include "rnn/gru_node.hxx"
+#include "rnn/lstm_node.hxx"
+#include "rnn/mgu_node.hxx"
+#include "rnn/ugrnn_node.hxx"
+#include "rnn/rnn_edge.hxx"
+#include "rnn/rnn_genome.hxx"
+#include "rnn/rnn_node.hxx"
+#include "rnn/rnn_node_interface.hxx"
+
+#include "rnn/generate_nn.hxx"
+
+#include "time_series/time_series.hxx"
+
+#include "gradient_test.hxx"
+
+int main(int argc, char **argv)
+{
+    vector<string> arguments = vector<string>(argv, argv + argc);
+
+    Log::initialize(arguments);
+    Log::set_id("main");
+
+    initialize_generator();
+
+    RNN_Genome *genome;
+
+    Log::info("TESTING DELTA\n");
+
+    vector<vector<double>> inputs;
+    vector<vector<double>> outputs;
+
+    int input_length = 10;
+    get_argument(arguments, "--input_length", true, input_length);
+
+    int timesteps = 10;
+    get_argument(arguments, "--timesteps", true, timesteps);
+
+    string weight_initialize_string = "random";
+    get_argument(arguments, "--weight_initialize", false, weight_initialize_string);
+
+    WeightType weight_initialize;
+    weight_initialize = get_enum_from_string(weight_initialize_string);
+
+    if (weight_initialize < 0 || weight_initialize >= NUM_WEIGHT_TYPES - 1)
+    {
+        Log::fatal("weight initialization method %s is set wrong \n", weight_initialize_string.c_str());
+    }
+
+    int max_recurrent_depth = 10;
+    get_argument(arguments, "--max_recurrent_depth", true, max_recurrent_depth);
+
+    Log::info("testing with max recurrent depth: %d\n", max_recurrent_depth);
+
+    inputs.resize(input_length);
+    for (size_t i = 0; i < inputs.size(); i++)
+    {
+        inputs[i].resize(timesteps);
+    }
+
+    outputs.resize(input_length);
+    for (size_t i = 0; i < outputs.size(); i++)
+    {
+        outputs[i].resize(timesteps);
+    }
+
+    generate_random_matrix(timesteps, input_length, inputs);
+    generate_random_oneHot_matrix(timesteps, input_length, outputs);
+
+    vector<string> inputs1;
+    vector<string> outputs1;
+
+    string input_par = "input";
+    string output_par = "output";
+    for (int32_t i = 0; i < input_length; i++)
+    {
+        string temp_input_par = input_par + to_string(i);
+        string temp_output_par = output_par + to_string(i);
+        inputs1.push_back(temp_input_par);
+        outputs1.push_back(temp_output_par);
+    }
+
+    genome = create_delta(inputs1, 2, 2, outputs1, max_recurrent_depth, weight_initialize);
+    gradient_test_class("DELTA: 1 Input, 1 Output", genome, inputs, outputs);
+    delete genome;
+
+    genome = create_enarc(inputs1, 2, 2, outputs1, max_recurrent_depth + 1, weight_initialize);
+    gradient_test_class("ENARC: 1 Input, 1 Output", genome, inputs, outputs);
+    delete genome;
+
+
+    genome = create_mgu(inputs1, 2, 2, outputs1, max_recurrent_depth + 1, weight_initialize);
+    gradient_test_class("MGU: 1 Input, 1 Output", genome, inputs, outputs);
+    delete genome;
+
+    genome = create_ugrnn(inputs1, 2, 2, outputs1, max_recurrent_depth + 1, weight_initialize);
+    gradient_test_class("UGRNN: 1 Input, 1 Output", genome, inputs, outputs);
+    delete genome;
+
+
+}
diff --git a/rnn_tests/test_softmax_output.cxx b/rnn_tests/test_softmax_output.cxx
new file mode 100644
index 00000000..73532d12
--- /dev/null
+++ b/rnn_tests/test_softmax_output.cxx
@@ -0,0 +1,142 @@
+// ./rnn_tests/test_softmax_output --std_message_level info --file_message_level info --output_directory "./test_output"  --timestep 4 --input_length 6
+
+#include <chrono>
+
+#include <fstream>
+using std::getline;
+using std::ifstream;
+
+#include <random>
+using std::minstd_rand0;
+using std::uniform_int_distribution;
+using std::uniform_real_distribution;
+
+#include <string>
+using std::string;
+using std::to_string;
+
+#include <vector>
+using std::vector;
+
+#include "common/arguments.hxx"
+#include "common/log.hxx"
+#include "common/weight_initialize.hxx"
+#include "rnn/lstm_node.hxx"
+#include "rnn/rnn_edge.hxx"
+#include "rnn/rnn_genome.hxx"
+#include "rnn/rnn_node.hxx"
+#include "rnn/rnn_node_interface.hxx"
+#include "rnn/generate_nn.hxx"
+#include "time_series/time_series.hxx"
+#include "gradient_test.hxx"
+
+
+
+int main(int argc, char **argv)
+{
+    vector<string> arguments = vector<string>(argv, argv + argc);
+
+    Log::initialize(arguments);
+    Log::set_id("main");
+
+    initialize_generator();
+
+    RNN_Genome *genome;
+
+    string weight_initialize_string = "random";
+    get_argument(arguments, "--weight_initialize", false, weight_initialize_string);
+
+    WeightType weight_initialize;
+    weight_initialize = get_enum_from_string(weight_initialize_string);
+
+    if (weight_initialize < 0 || weight_initialize >= NUM_WEIGHT_TYPES - 1)
+    {
+        Log::fatal("weight initialization method %s is set wrong \n", weight_initialize_string.c_str());
+    }
+
+
+    vector<vector<double>> outputs;
+    vector<vector<double>> expected;
+
+    int timesteps = 10;
+    get_argument(arguments, "--timesteps", true, timesteps);
+
+    int output_length = 1;
+    get_argument(arguments,"--output_length",true,output_length);
+
+    outputs.resize(output_length);
+    for (size_t i = 0; i < outputs.size(); i++) {
+        outputs[i].resize(timesteps);
+    }
+
+    expected.resize(output_length);
+    for (size_t i = 0; i < expected.size(); i++) {
+        expected[i].resize(timesteps);
+    }
+
+    generate_random_matrix(timesteps, output_length, outputs);
+    generate_random_oneHot_matrix(timesteps, output_length, expected);
+
+    double mse;
+    vector<vector<double>> softmax_gradients, deltas;
+
+
+    vector<string> inputs1;
+    vector<string> outputs1;
+
+    string input_par = "input";
+    string output_par = "output";
+    for (int32_t i = 0; i < output_length; i++) {
+        string temp_input_par = input_par + to_string(i);
+        string temp_output_par = output_par + to_string(i);
+        inputs1.push_back(temp_input_par);
+        outputs1.push_back(temp_output_par);
+    }
+
+
+    genome = create_lstm(inputs1, 1, 1, outputs1, timesteps, weight_initialize);
+
+    RNN *rnn = genome->get_rnn();
+
+
+    rnn->enable_use_regression(false);
+
+
+    deltas = rnn->get_softmax_gradient(outputs, expected, mse, softmax_gradients);
+
+    for (uint32_t j = 0; j < outputs[0].size(); j++) {
+        for (uint32_t i = 0; i < outputs.size(); i++) {
+            std::cout<<outputs[i][j]<<" ";
+        }
+        std::cout<<std::endl;
+    }
+
+    std::cout<<std::endl;
+
+    for (uint32_t j = 0; j < expected[0].size(); j++)
+    {
+        for (uint32_t i = 0; i < expected.size(); i++)
+        {
+            std::cout << expected[i][j] << " ";
+        }
+        std::cout << std::endl;
+    }
+
+    std::cout<<std::endl;
+
+    for (uint32_t j = 0; j < deltas[0].size(); j++) {
+        for (uint32_t i = 0; i < deltas.size(); i++) {
+            double difference = softmax_gradients[i][j] - deltas[i][j];
+            if (fabs(difference) > 10e-10)
+            {
+                Log::info("\t\tFAILED softmax gradient[%d][%d]: %lf, deltas[%d][%d]: %lf, difference: %lf\n",i, j, softmax_gradients[i][j],i, j, deltas[i][j], difference);
+                //exit(1);
+            }
+            else
+            {
+                Log::info("\t\tPASSED softmax gradient[%d][%d]: %lf, deltas[%d][%d]: %lf, difference: %lf\n", i, j, softmax_gradients[i][j], i, j, deltas[i][j], difference);
+            }
+        }
+    }
+}
+
diff --git a/untitled.sh b/untitled.sh
deleted file mode 100644
index 05fa1d80..00000000
--- a/untitled.sh
+++ /dev/null
@@ -1 +0,0 @@
-mpirun -np 2 ./mpi/examm_mpi --training_filenames ../datasets/pennchar/input.txt --test_filenames ../datasets/pennchar/input.txt --word_offset 1 --number_islands 10 --population_size 10 --max_genomes 2000 --bp_iterations 10 --output_directory $exp_name --possible_node_types simple ENARC --normalize min_max --std_message_level INFO --file_message_level INFO
\ No newline at end of file
diff --git a/word_series/CMakeLists.txt b/word_series/CMakeLists.txt
deleted file mode 100644
index 794713db..00000000
--- a/word_series/CMakeLists.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-add_library(exact_word_series word_series)
-
-target_link_libraries(exact_word_series exact_common pthread)
diff --git a/word_series/word_series.hxx b/word_series/word_series.hxx
deleted file mode 100644
index 5b9fd667..00000000
--- a/word_series/word_series.hxx
+++ /dev/null
@@ -1,191 +0,0 @@
-#ifndef EXAMM_WORD_SERIES_HXX
-#define EXAMM_WORD_SERIES_HXX
-
-#include <iostream>
-using std::ostream;
-
-#include <string>
-using std::string;
-
-#include <map>
-using std::map;
-
-#include <vector>
-using std::vector;
-
-
- class WordSeries{
- 	private:
- 		string name;
- 		int vocab_size;
-
- 		double min;
-        double average;
-        double max;
-        double std_dev;
-        double variance;
-        double min_change;
-        double max_change;
-
- 		vector<double> values;
- 		WordSeries(); 
-
- 	public:
- 		WordSeries(string _name);
-
-        void add_value(double value);
-        double get_value(int i);
-
-        void calculate_statistics();
-        void print_statistics();
-
-        int get_number_values() const;
-
-        double get_min() const;
-        double get_average() const;
-        double get_max() const;
-        double get_std_dev() const;
-        double get_variance() const;
-        double get_min_change() const;
-        double get_max_change() const;
-
-
-        void normalize_min_max(double min, double max);
-        void normalize_avg_std_dev(double avg, double std_dev, double norm_max);
-
-        void cut(int32_t start, int32_t stop);
-
-        double get_correlation(const WordSeries *other, int32_t lag) const;
-
-        WordSeries* copy();
-
-        void copy_values(vector<double> &series);
-
- };
-
- class SentenceSeries {
-	private:
-        int number_rows;
-        string filename;
-      	map<string,int> vocab;
-      	vector<string> word_index;
-        map <string,WordSeries*> word_series;
-
-
-        SentenceSeries();
-    public:
-
-
-SentenceSeries(const string _filename,const vector<string> & _word_index , const map<string,int> &_vocab);        ~SentenceSeries();
-        void add_word_series(string name);
-
-        int get_number_rows() const;
-        int get_number_columns() const;
-
-        string get_filename() const;
-        
-        vector<string> get_word_index() const;
-		
-
-        void get_series(string word_name, vector<double> &series);
-
-        double get_min(string word);
-        double get_average(string word);
-        double get_max(string word);
-        double get_std_dev(string word);
-        double get_variance(string word);
-        double get_min_change(string word);
-        double get_max_change(string word);
-
-        double get_correlation(string word1, string word2, int32_t lag) const;
-
-        void normalize_min_max(string word, double min, double max);
-        void normalize_avg_std_dev(string word, double avg, double std_dev, double norm_max);
-
-        void export_word_series(vector< vector<double> > &data , int word_offset);
-        void export_word_series(vector< vector<double> > &data );
-       
-        SentenceSeries* copy();
-
-        void select_parameters(const vector<string> &input_parameter_names, const vector<string> &output_parameter_names);
-        void select_parameters(const vector<string> &parameter_names);
-
-};
-
-
-class Corpus {
-
-	private:
-
-		string normalize_type;
-
-        vector<string> filenames;
-
-        vector<int> training_indexes;
-        vector<int> test_indexes;
-
-        vector<string> input_parameter_names;
-        vector<string> output_parameter_names;
-        vector<string> all_parameter_names;
-
-        vector<SentenceSeries*> sent_series;
-
-        map<string,double> normalize_mins;
-        map<string,double> normalize_maxs;
-
-        map<string,double> normalize_avgs;
-        map<string,double> normalize_std_devs;
-
-		vector<string> word_index;
-		map<string,int> vocab;
-
-		void load_word_library();
-
-
-	public:
-
-		Corpus();
-		~Corpus();
-
-		static Corpus* generate_from_arguments(const vector<string> &arguments);
-		static Corpus* generate_test(const vector<string> &_test_filenames, const vector<string> &_input_parameter_names, const vector<string> &_output_parameter_names);
-
-        void normalize_min_max();
-        void normalize_min_max(const map<string,double> &_normalize_mins, const map<string,double> &_normalize_maxs);
-
-        void normalize_avg_std_dev();
-        void normalize_avg_std_dev(const map<string,double> &_normalize_avgs, const map<string,double> &_normalize_std_devs, const map<string,double> &_normalize_mins, const map<string,double> &_normalize_maxs);
-
-        void write_sentence_series_sets(string base_filename);
-
-        void export_sent_series(const vector<int> &series_indexes, int word_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs);
-
-        void export_training_series(int word_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs);
-
-        void export_test_series(int word_offset, vector< vector< vector<double> > > &inputs, vector< vector< vector<double> > > &outputs);
-
-        void export_series_by_name(string field_name, vector< vector<double> > &exported_series);
-
-        double denormalize(string field_name, double value);
-
-        string get_normalize_type() const;
-        map<string,double> get_normalize_mins() const;
-        map<string,double> get_normalize_maxs() const;
-        map<string,double> get_normalize_avgs() const;
-        map<string,double> get_normalize_std_devs() const;
-
-        vector<string> get_input_parameter_names() const;
-        vector<string> get_output_parameter_names() const;
-
-        int get_number_series() const;
-
-        int get_number_inputs() const;
-        int get_number_outputs() const;
-
-        void set_training_indexes(const vector<int> &_training_indexes);
-        void set_test_indexes(const vector<int> &_test_indexes);
-
-        SentenceSeries *get_set(int32_t i);
-};
-
-#endif
\ No newline at end of file