From c985994b5d22d7abd0621c9a643468990006911c Mon Sep 17 00:00:00 2001 From: Kiarod Pashminehazar Date: Fri, 30 May 2025 13:22:28 -0700 Subject: [PATCH] bump samtools version to 1.22 --- CHANGELOG.md | 7 ++++--- Dockerfile | 2 +- README.md | 2 +- metadata.yaml | 2 +- 4 files changed, 7 insertions(+), 6 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 41f3a15..ddf1428 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,12 +6,13 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/). This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). --- - -## [Unreleased] +## [1.22] 2025-05-30 ### Added - Add gnuplot ---- +### Changed +- Update SAMTools version to 1.22 + ## [1.21] 2024-09-16 ### Changed - Update SAMTools version to 1.21 diff --git a/Dockerfile b/Dockerfile index a9c943a..a6d5308 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,7 +1,7 @@ ARG MINIFORGE_VERSION=22.9.0-2 FROM condaforge/mambaforge:${MINIFORGE_VERSION} AS builder # Use mamba to install tools and dependencies into /usr/local -ARG SAMTOOLS_VERSION=1.21 +ARG SAMTOOLS_VERSION=1.22 RUN mamba create -qy -p /usr/local \ -c conda-forge \ -c bioconda \ diff --git a/README.md b/README.md index 88e3234..1f6c8be 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ SAMtools documentation [here](http://www.htslib.org/doc/samtools.html). # Version | Tool | Version | |------|---------| -|SAMtools| 1.21 | +|SAMtools| 1.22 | |gnuplot| 5.4 patchlevel 10 | --- diff --git a/metadata.yaml b/metadata.yaml index ff34370..7e53f3d 100644 --- a/metadata.yaml +++ b/metadata.yaml @@ -5,7 +5,7 @@ maintainers: ['rhughwhite@mednet.ucla.edu'] contributors: ['Rupert Hugh-White', 'Helena Winata', 'Arpi Beshlikyan', 'Jaron Arbet', 'Sorel Fitz-Gibbon', 'Beth Neilsen', 'Kiarod Pashminehazar'] languages: ['Dockerfile'] tools: ['SAMtools', 'gnuplot'] -version: ['1.21'] +version: ['1.22'] purpose: 'A tool for reading/writing/editing/indexing/viewing SAM/BAM/CRAM format' references: 'Li H et al. Bioinformatics 25, (2009)' image_name: 'samtools'