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258 lines (228 loc) · 9.81 KB
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"""Least-cost corridor analysis.
Identifies zones of low cumulative traversal cost between two (or more)
source locations on a friction surface. Unlike a single-cell path, a
corridor shows all cells within a cost threshold of the optimal route.
Algorithm
---------
1. Compute ``cost_distance(friction, source_a)`` and
``cost_distance(friction, source_b)``.
2. Sum the two surfaces: ``corridor = cd_a + cd_b``.
3. Normalize: ``corridor - corridor.min()``.
4. Optionally threshold to produce a binary corridor mask.
Because the function is pure arithmetic on ``cost_distance`` outputs,
all four backends (NumPy, CuPy, Dask+NumPy, Dask+CuPy) are supported
natively with no extra kernel code.
"""
from __future__ import annotations
import itertools
import numpy as np
import xarray as xr
from xrspatial.cost_distance import cost_distance
from xrspatial.utils import _validate_matching_shape, _validate_raster
def _scalar_to_float(da_scalar):
"""Extract a Python float from a scalar DataArray (numpy/cupy/dask)."""
data = da_scalar.data
if hasattr(data, 'compute'):
data = data.compute()
if hasattr(data, 'get'):
data = data.get()
return float(data)
def _apply_geo_metadata(
result: xr.DataArray,
geo_source: xr.DataArray | None,
) -> xr.DataArray:
"""Re-emit the grid-defining raster's attrs/name on the corridor output.
The corridor is ``cd_a + cd_b``, and each cost-distance surface carries
the attrs of its *source* raster (see ``cost_distance``). Source rasters
are usually plain marker masks with no geo-attrs, so the xarray binary
sum drops ``res``/``crs``/``transform``/``nodatavals`` even when the
friction surface that defines the grid had them. When a grid-defining
raster is available (the non-precomputed case, where *friction* is it),
copy its attrs and name back onto the result.
"""
if geo_source is None:
return result
result = result.copy()
result.attrs = dict(geo_source.attrs)
return result.rename(geo_source.name)
def _compute_corridor(
cd_a: xr.DataArray,
cd_b: xr.DataArray,
threshold: float | None,
relative: bool,
geo_source: xr.DataArray | None = None,
) -> xr.DataArray:
"""Sum two cost-distance surfaces, normalize, and optionally threshold."""
corridor = cd_a + cd_b
corridor_min = _scalar_to_float(corridor.min())
if not np.isfinite(corridor_min):
# Sources are mutually unreachable -- return all-NaN.
return _apply_geo_metadata(corridor * np.nan, geo_source)
normalized = corridor - corridor_min
if threshold is not None:
if relative:
cutoff = threshold * corridor_min
else:
cutoff = threshold
data = normalized.data
try:
import dask.array as _da
if isinstance(data, _da.Array):
data = _da.where(data <= cutoff, data, np.nan)
else:
raise ImportError
except ImportError:
if hasattr(data, 'get'): # cupy
import cupy as cp
data = cp.where(data <= cutoff, data, cp.nan)
else:
data = np.where(data <= cutoff, data, np.nan)
normalized = normalized.copy(data=data)
return _apply_geo_metadata(normalized, geo_source)
def least_cost_corridor(
friction: xr.DataArray,
source_a: xr.DataArray | None = None,
source_b: xr.DataArray | None = None,
*,
sources: list[xr.DataArray] | None = None,
pairwise: bool = False,
threshold: float | None = None,
relative: bool = False,
precomputed: bool = False,
x: str = "x",
y: str = "y",
connectivity: int = 8,
max_cost: float = np.inf,
) -> xr.DataArray | xr.Dataset:
"""Compute a least-cost corridor between two source regions.
A corridor surface is the sum of two cost-distance fields (one from
each source), normalized by the minimum corridor cost. Cells where
the normalized value falls within *threshold* form the corridor.
Parameters
----------
friction : xr.DataArray
2-D friction (cost) surface. Positive finite values are
passable; NaN or ``<= 0`` marks barriers. Ignored when
*precomputed* is True.
source_a, source_b : xr.DataArray, optional
Source rasters identifying start and end regions. Non-zero
finite values mark source cells (same convention as
``cost_distance``). Required unless *sources* is given.
When *precomputed* is True these are treated as pre-computed
cost-distance surfaces.
sources : list of xr.DataArray, optional
Multiple source rasters for pairwise corridor computation.
Mutually exclusive with *source_a* / *source_b*.
pairwise : bool, default False
When True and *sources* has more than two entries, compute
corridors for every unique pair and return an ``xr.Dataset``
with one variable per pair (named ``corridor_i_j``).
threshold : float, optional
Cost threshold for masking the corridor. Cells whose
normalized corridor cost exceeds this value are set to NaN.
relative : bool, default False
If True, *threshold* is a fraction of the minimum corridor
cost (e.g. 0.10 means within 10 % of optimal). If False,
*threshold* is in absolute cost units.
precomputed : bool, default False
If True, *source_a* / *source_b* (or entries in *sources*)
are already cost-distance surfaces. Skips the internal
``cost_distance`` calls.
x, y : str
Coordinate names forwarded to ``cost_distance``.
connectivity : int, default 8
Pixel connectivity (4 or 8), forwarded to ``cost_distance``.
max_cost : float, default np.inf
Maximum cost budget, forwarded to ``cost_distance``.
Returns
-------
xr.DataArray or xr.Dataset
Normalized corridor surface (float). Values start at 0 along
the optimal corridor and increase with deviation from it.
When *threshold* is set, cells beyond the cutoff are NaN.
With *pairwise=True* and multiple sources, returns a Dataset
keyed by pair indices (``corridor_0_1``, ``corridor_0_2``, ...).
"""
# ------------------------------------------------------------------
# Input validation
# ------------------------------------------------------------------
if sources is not None and (source_a is not None or source_b is not None):
raise ValueError(
"Provide either (source_a, source_b) or sources, not both"
)
if sources is not None:
if len(sources) < 2:
raise ValueError("sources must contain at least 2 entries")
for i, s in enumerate(sources):
_validate_raster(
s, func_name="least_cost_corridor", name=f"sources[{i}]"
)
else:
if source_a is None or source_b is None:
raise ValueError(
"source_a and source_b are required when sources is not given"
)
_validate_raster(
source_a, func_name="least_cost_corridor", name="source_a"
)
_validate_raster(
source_b, func_name="least_cost_corridor", name="source_b"
)
sources = [source_a, source_b]
if not precomputed:
_validate_raster(
friction, func_name="least_cost_corridor", name="friction"
)
if threshold is not None and threshold < 0:
raise ValueError("threshold must be non-negative")
# ------------------------------------------------------------------
# Compute cost-distance surfaces (or use precomputed ones)
# ------------------------------------------------------------------
if precomputed:
cd_surfaces = list(sources)
# cost_distance() guarantees matching shapes when it runs, but the
# precomputed path bypasses it. Without this check, surfaces of
# differing shape get silently aligned on the intersection of their
# coordinates by xarray, producing a truncated, wrong-valued corridor.
# Like cost_distance, this guards shape only; mismatched coordinates
# on same-shape surfaces are out of scope.
expected_shape = cd_surfaces[0].shape
for i, cd in enumerate(cd_surfaces[1:], start=1):
_validate_matching_shape(
cd,
expected_shape,
func_name="least_cost_corridor",
name=f"precomputed surface {i}",
expected_name="precomputed surface 0",
)
# No friction surface to draw grid metadata from -- keep the
# existing source-derived attrs/name behaviour.
geo_source = None
else:
cd_surfaces = [
cost_distance(
src, friction,
x=x, y=y, connectivity=connectivity, max_cost=max_cost,
)
for src in sources
]
# The friction surface defines the grid (res/crs/transform), so its
# attrs and name should ride through to the corridor output.
geo_source = friction
# ------------------------------------------------------------------
# Two-source case: return a single DataArray
# ------------------------------------------------------------------
if len(cd_surfaces) == 2 and not pairwise:
return _compute_corridor(
cd_surfaces[0], cd_surfaces[1], threshold, relative, geo_source
)
# ------------------------------------------------------------------
# Multi-source pairwise: return a Dataset
# ------------------------------------------------------------------
corridors = {}
for i, j in itertools.combinations(range(len(cd_surfaces)), 2):
name = f"corridor_{i}_{j}"
corridors[name] = _compute_corridor(
cd_surfaces[i], cd_surfaces[j], threshold, relative, geo_source
)
return xr.Dataset(corridors)