Skip to content

Allocation problem working in cluster. #17

@PAR-CB

Description

@PAR-CB

Hello!
I have a problem regarding allocating memory through the calculus of MetaboAnalystR.
Following the indications and code of https://dev.metaboanalyst.ca/resources/vignettes/LCMSMS_Raw_Spectral_Processing.html
I have encountered that most of the times I cannot "surpass" the second line of code
best_params <- PerformParamsOptimization(mSet, param = SetPeakParam(platform = "UPLC-Q/E"), ncore = 4);
mostly because a memory error related with mcfork, as I adjoint.
I am running this in a slurm cluster, with optimal memory and minimum 4 cpus for the task.

slurm.drago31070244,790109.err.txt

Any help would be greatly appreciated.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions