error #4
Description
- Using the latest version, an error was generated.
❯ ../bin/seq2fun --sampletable sample.txt --tfmi birds/birds_v2.0.fmi --genemap birds/birds_annotation_v2.0.txt -w 1 --profiling -V --outputMappedCleanReads --outputReadsAnnoMap
Codon table of codontable1 is selected
[22:10:36] Reading gene GO KO species map from file birds/birds_annotation_v2.0.txt
[22:10:37] Reading KO full name from file: ../database/ko_fullname.txt
[22:10:37] Reading KO pathway map from file: ../database/pathway_ko.txt
[22:10:37] Reading KO pathway stats map from file: ../database/pathway_ko_stats.txt
[22:10:37] Reading protein (trans search) BWT FMI index from file birds/birds_v2.0.fmi
[22:10:37] Protein (trans search) BWT of length 280953977 has been read with 482205 sequences, alphabet = *ACDEFGHIKLMNPQRSTVWY
[22:10:37] Protein (trans search) double length is 280471772.000000
[22:10:37] finish BwtFmiDB initiation
[22:10:37] Reading sample table from file sample.txt
[1] 41193 segmentation fault ../bin/seq2fun --sampletable sample.txt --tfmi birds/birds_v2.0.fmi --genemap
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Please let me know what numbers of CPU cores and memories are matched.
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Additionally, I had the same error from ExpressAnalyst docker. But when I reduced CPU cores and sample numbers, it worked. But Docker version is too slow, I'd like to try this github version.
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I also tried Docker version on Google Cloud Tau2A (arm64). Do you plan to build arm version?