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Add advanced QSAR features#2

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advanced-features-275059687226191919
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Add advanced QSAR features#2
google-labs-jules[bot] wants to merge 1 commit into
mainfrom
advanced-features-275059687226191919

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Improved the QSAR/QSPR system by adding:

  1. Morgan Fingerprints: Option to calculate 2048-bit ECFP4 fingerprints instead of just basic descriptors.
  2. Advanced Models: Support for Gradient Boosting and Support Vector Regression (SVR) in addition to Random Forest.
  3. Hyperparameter Tuning: Automated grid search for model optimization.
  4. CLI Updates: New flags to control these features.

PR created automatically by Jules for task 275059687226191919 started by @Abmanna

… tuning

- Added Morgan fingerprint generation to PreprocessingAgent (using modern rdFingerprintGenerator).
- Added support for GradientBoostingRegressor and SVR in ModelBuilderAgent.
- Added hyperparameter tuning with GridSearchCV in ModelBuilderAgent.
- Updated main.py to expose new features via CLI arguments (--descriptors, --model, --tune).
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