Skip to content

Update mcot_anchor.cpp #6

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
parthian-sterlet wants to merge 1 commit into
base: new-fixes
Choose a base branch
from
Open

Update mcot_anchor.cpp #6

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion src/anchor_vs_one_partner/mcot_anchor.cpp
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -757,7 +757,7 @@ int main(int argc, char *argv[])
// int height_permut = 10, size_min_permut = 200, size_max_permut = 300; //50000 150000 25
double pvalue = 0.0005, pvalue_mult = 1.5, dpvalue = 0.0000000005; // 0.0005 1.5
int mot_anchor = 0;// 0 = pwm from file >0 pwm from pre-computed database
int s_overlap_min = 6, s_ncycle_small = 1000, s_ncycle_large = 10000, reinit_permut = 25;//for similarity min_size_of_alignment, no. of permutation (test & detailed)
int s_overlap_min = 6, s_ncycle_small = 1000, s_ncycle_large = 10000, reinit_permut = 40;//for similarity min_size_of_alignment, no. of permutation (test & detailed)
double s_granul = 0.001;//for similarity okruglenie 4astotnyh matric
int shift_min = atoi(argv[4]); // minimal spacer length
int shift_max = atoi(argv[5]); // upper bound of spacer length
Expand Down