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Keep Learning .....
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Keep Learning .....
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Achievement: Pull Shark

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Achievement: Pull Shark

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Ajaingithub/README.md

💫 About Me:

👋 Hi, I’m Abhinav Jain
🔬 Postdoctoral Fellow at Helmholtz Munich | Computational Biologist at VoyantBio | Collaborator at Mayo Clinic

I specialize in integrative multi-omics and computational biology, with a focus on understanding disease mechanisms and therapeutic targets.

🧬 Experience across:

  • Single-cell & multi-modal: RNA-seq, ATAC-seq, Multiome, CITE-seq, ADT, TCR, antigen profiling, BEAM-T
  • Spatial transcriptomics: Xenium, Visium, MERFISH, CODEX, CycIF
  • Bulk omics: WES, WGS, RNA-seq, ATAC-seq
  • Population genomics: phenotype and protein GWAS (UK Biobank)

⚙️ Tools & workflows:
R, Python, Nextflow, Docker, Singularity, Bash

🤖 AI & advanced methods:

  • Foundation models for biological data
  • AI agents for analysis automation and interpretation
  • Machine learning & deep learning for multi-omics integration

💡 Interested in collaborations and opportunities in:
cancer, immunology, autoimmune disease, immune aging, infectious disease (including SARS-CoV-2), population genomics, rare diseases, and AI/ML-driven biology

📫 Contact: abhinavjj@gmail.com

🌐 Socials:

LinkedIn X

💻 Tech Stack:

R Python Shell Script Markdown Anaconda Adobe Illustrator Keras Matplotlib NumPy Pandas Plotly PyTorch scikit-learn Scipy TensorFlow Git GitHub Docker

📊 GitHub Stats:



✍️ Random Dev Quote

🔝 Top Contributed Repo

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  1. RShiny_CoV2 RShiny_CoV2 Public

    Develop the RShiny Web Database for scCITESeq in Aging

    R

  2. scCITESeq_pipeline scCITESeq_pipeline Public

    Batch and Modality Integration of single cell CITEseq dataset

    R 1

  3. scTCRseq scTCRseq Public

    TCR Downstream analysis clonal sharing, diversity, and clonality

    R

  4. Dockers-Nextflow Dockers-Nextflow Public

    Docker Containers

    Dockerfile

  5. DNA-Language-Model DNA-Language-Model Public

    Fine tuning the DNA language model i.e. Nucloetide Transformers to identify the promotor and enhancer region, Variant effect prediction, GWAS, Transcription factor binding, Epigenetic marks predict…

    Jupyter Notebook

  6. scRNA_Agent scRNA_Agent Public

    Developing a scRNA agent that can perform data curation -> download -> preprocessing -> differential -> plots.

    Jupyter Notebook