Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- LC-NE_BARseq_MAPseq_analyses Public
AllenNeuralDynamics/LC-NE_BARseq_MAPseq_analyses’s past year of commit activity - posetail Public
AllenNeuralDynamics/posetail’s past year of commit activity - aind-data-upload-utils Public
Library of utility methods to facilitate file uploads, such as partitioning directories.
AllenNeuralDynamics/aind-data-upload-utils’s past year of commit activity - aind-dynamic-foraging-basic-analysis Public
compute behavioral metrics and generate basic plottings for the dynamic foraging task
AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis’s past year of commit activity - segmentation-skeleton-metrics Public
A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
AllenNeuralDynamics/segmentation-skeleton-metrics’s past year of commit activity - aind-torch-utils Public
Generic, queue-based, multi-GPU PyTorch inference pipeline for large volumetric (3D or 5D T,C,Z,Y,X) data.
AllenNeuralDynamics/aind-torch-utils’s past year of commit activity - aind-software-docs Public
Centralized documentation repository for Scientific Computing, publishes to RTD
AllenNeuralDynamics/aind-software-docs’s past year of commit activity - data-curation-aind-analysis-wrapper Public Forked from AllenNeuralDynamics/aind-analysis-wrapper-template
Rachel's capsule for data-curation. This serves a wrapper for running analysis functions on input data
AllenNeuralDynamics/data-curation-aind-analysis-wrapper’s past year of commit activity
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