Skip to content

fixes #271. Also addes ORCID individual for Hogan. Created idranges f… #272

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
hoganwr merged 1 commit into from
Apr 9, 2026
Merged

fixes #271. Also addes ORCID individual for Hogan. Created idranges f… #272

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
42 changes: 37 additions & 5 deletions src/ontology/apollo_sv-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -688,6 +688,8 @@ Declaration(Class(obo:APOLLO_SV_00000650))
Declaration(Class(obo:APOLLO_SV_00000651))
Declaration(Class(obo:APOLLO_SV_00000652))
Declaration(Class(obo:APOLLO_SV_00000653))
Declaration(Class(obo:APOLLO_SV_00000654))
Declaration(Class(obo:APOLLO_SV_00000655))
Declaration(Class(obo:APOLLO_SV_00000793))
Declaration(Class(obo:APOLLO_SV_00000794))
Declaration(Class(obo:APOLLO_SV_00000795))
Expand Down Expand Up @@ -1531,6 +1533,7 @@ Declaration(DataProperty(obo:APOLLO_SV_00000102))
Declaration(NamedIndividual(obo:APOLLO_SV_00000035))
Declaration(NamedIndividual(obo:APOLLO_SV_00000113))
Declaration(NamedIndividual(obo:UO_0000034))
Declaration(NamedIndividual(<https://orcid.org/0000-0002-9881-1017>))
Declaration(AnnotationProperty(obo:APOLLO_SV_00000319))
Declaration(AnnotationProperty(obo:APOLLO_SV_00000320))
Declaration(AnnotationProperty(obo:APOLLO_SV_00000321))
Expand Down Expand Up @@ -1579,6 +1582,7 @@ Declaration(AnnotationProperty(dc:date))
Declaration(AnnotationProperty(dc:source))
Declaration(AnnotationProperty(dc:type))
Declaration(AnnotationProperty(terms:contributor))
Declaration(AnnotationProperty(terms:created))
Declaration(AnnotationProperty(terms:description))
Declaration(AnnotationProperty(terms:license))
Declaration(AnnotationProperty(terms:title))
Expand Down Expand Up @@ -1741,11 +1745,11 @@ AnnotationAssertion(rdfs:label dc:type "dc:type")

AnnotationAssertion(rdfs:label oboInOwl:hasAlternativeId "has_alternative_id")

# Annotation Property: oboInOwl:hasBroadSynonym (has broad synonym)
# Annotation Property: oboInOwl:hasBroadSynonym (has_broad_synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")

# Annotation Property: oboInOwl:hasDbXref (database_cross_reference)
# Annotation Property: oboInOwl:hasDbXref (has cross-reference)

AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")

Expand All @@ -1761,7 +1765,7 @@ AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")

AnnotationAssertion(rdfs:label oboInOwl:hasOBONamespace "has_obo_namespace")

# Annotation Property: oboInOwl:hasRelatedSynonym (has related synonym)
# Annotation Property: oboInOwl:hasRelatedSynonym (has_related_synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasRelatedSynonym "has_related_synonym")

Expand Down Expand Up @@ -2205,7 +2209,7 @@ AnnotationAssertion(obo:IAO_0000412 obo:OMIABIS_0000048 "http://purl.obolibrary.
AnnotationAssertion(rdfs:label obo:OMIABIS_0000048 "is owned by"@en)
SubObjectPropertyOf(obo:OMIABIS_0000048 owl:topObjectProperty)

# Object Property: obo:RO_0000053 (has characteristic)
# Object Property: obo:RO_0000053 (bearer of)

AnnotationAssertion(obo:IAO_0000118 obo:RO_0000053 "bearer of"@en)
AnnotationAssertion(obo:IAO_0000118 obo:RO_0000053 "bearer_of"@en)
Expand Down Expand Up @@ -8351,6 +8355,28 @@ AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000653 "human-to-human communicab
SubClassOf(obo:APOLLO_SV_00000653 obo:IDO_0000623)
SubClassOf(obo:APOLLO_SV_00000653 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:RO_0000057 obo:NCBITaxon_9606)))))

# Class: obo:APOLLO_SV_00000654 (historical scenario)

AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000654 "historical infectious disease scenario date"@en)
AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000654 "An infectious disease scenario that represents or reconstructs an outbreak or epidemic that actually occurred, usually constrained by observed data."@en)
AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000654 "William R. Hogan"@en)
AnnotationAssertion(dc:contributor obo:APOLLO_SV_00000654 "John Levander"@en)
AnnotationAssertion(terms:contributor obo:APOLLO_SV_00000654 <https://orcid.org/0000-0002-9881-1017>)
AnnotationAssertion(terms:created obo:APOLLO_SV_00000654 "2026-04-04T19:36:00Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000654 "historical scenario"@en)
SubClassOf(obo:APOLLO_SV_00000654 obo:APOLLO_SV_00000184)

# Class: obo:APOLLO_SV_00000655 (hypothetical scenario)

AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000655 "hypothetical infecctious disease scenario"@en)
AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000655 "An infectious disease scenario that represents a possible, assumed, projected, or counterfactual outbreak or epidemic, and does not need to correspond to a specific observed event."@en)
AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000655 "William R. Hogan"@en)
AnnotationAssertion(dc:contributor obo:APOLLO_SV_00000655 "John Levander"@en)
AnnotationAssertion(terms:contributor obo:APOLLO_SV_00000655 <https://orcid.org/0000-0002-9881-1017>)
AnnotationAssertion(terms:created obo:APOLLO_SV_00000655 "2026-04-04T19:52:04Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000655 "hypothetical scenario"@en)
SubClassOf(obo:APOLLO_SV_00000655 obo:APOLLO_SV_00000184)

# Class: obo:APOLLO_SV_00000793 (epidemic simulator action specification)

AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000793 "epidemic simulator action specification"@en)
Expand Down Expand Up @@ -14443,7 +14469,7 @@ AnnotationAssertion(rdfs:label <http://www.ebi.ac.uk/efo/EFO_0004600> "genomic d
SubClassOf(<http://www.ebi.ac.uk/efo/EFO_0004600> obo:IAO_0000100)
SubClassOf(<http://www.ebi.ac.uk/efo/EFO_0004600> ObjectSomeValuesFrom(obo:IAO_0000136 obo:OBI_0100026))

# Class: oboInOwl:ObsoleteClass (obsolete_class)
# Class: oboInOwl:ObsoleteClass (Obsolete Class)

AnnotationAssertion(rdfs:label oboInOwl:ObsoleteClass "Obsolete Class"@en)

Expand All @@ -14467,6 +14493,12 @@ AnnotationAssertion(rdfs:comment obo:UO_0000034 "\"A time unit which is equal to
AnnotationAssertion(rdfs:label obo:UO_0000034 "week")
ClassAssertion(obo:UO_0000003 obo:UO_0000034)

# Individual: <https://orcid.org/0000-0002-9881-1017> (William R. Hogan)

AnnotationAssertion(terms:created <https://orcid.org/0000-0002-9881-1017> "2026-04-04T19:54:38Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <https://orcid.org/0000-0002-9881-1017> "William R. Hogan"@en)
ClassAssertion(obo:NCBITaxon_9606 <https://orcid.org/0000-0002-9881-1017>)


AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:GEO_000000005 "administrativeLocations")
)
14 changes: 7 additions & 7 deletions src/ontology/apollo_sv-idranges.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,8 +16,8 @@ Ontology: <http://purl.obolibrary.org/obo/apollo_sv/apollo_sv-idranges.owl>

Annotations:
idsfor: "APOLLO_SV",
idprefix: "http://purl.obolibrary.org/obo/APOLLO_SV_",
iddigits: 7
idprefix: "http://purl.obolibrary.org/obo/APOLLOSV_",
iddigits: 8

AnnotationProperty: idprefix:

Expand All @@ -33,20 +33,20 @@ AnnotationProperty: allocatedto:
Datatype: idrange:1

Annotations:
allocatedto: "ONTOLOGY-CREATOR"
allocatedto: "William Hogan"

EquivalentTo:
xsd:integer[>= 0 , <= 999999]
xsd:integer[>= 0 , <= 100000]


Datatype: idrange:2

Annotations:
allocatedto: "ADDITIONAL EDITOR"
allocatedto: "Matt Diller"

EquivalentTo:
xsd:integer[>= 1000000 , <= 1999999]
xsd:integer[>= 100001 , <= 200000]


Datatype: xsd:integer
Datatype: rdf:PlainLiteral
Expand Down
Loading