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Arc Research Institute

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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 3.3k 385

  2. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 508 143

  3. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 491 48

  4. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 147 31

  5. xsra xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 120 11

  6. cell-eval cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    Python 119 42

Repositories

Showing 10 of 31 repositories
  • cyto Public

    A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

    ArcInstitute/cyto’s past year of commit activity
    Rust 27 BSD-3-Clause 1 17 0 Updated Jan 29, 2026
  • cell-load Public

    pytorch dataloaders for single-cell perturbation data

    ArcInstitute/cell-load’s past year of commit activity
    Python 42 MIT 25 12 5 Updated Jan 28, 2026
  • state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    ArcInstitute/state’s past year of commit activity
    Python 508 143 28 (1 issue needs help) 21 Updated Jan 28, 2026
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools’s past year of commit activity
    Rust 35 3 6 0 Updated Jan 28, 2026
  • Wizards-Staff Public

    Calcium imaging analysis pipeline of outputs from Lizard-Wizard for the Arc Institute.

    ArcInstitute/Wizards-Staff’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jan 26, 2026
  • stack Public

    Stack is a single-cell foundation model that enables in-context learning at inference time.

    ArcInstitute/stack’s past year of commit activity
    Jupyter Notebook 75 6 0 0 Updated Jan 24, 2026
  • binseq Public

    A high efficiency binary format for sequencing data

    ArcInstitute/binseq’s past year of commit activity
    Rust 94 5 5 0 Updated Jan 24, 2026
  • cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    ArcInstitute/cell-eval’s past year of commit activity
    Python 119 MIT 42 3 6 Updated Jan 16, 2026
  • pycyto Public

    python utilities for cyto

    ArcInstitute/pycyto’s past year of commit activity
    Python 0 BSD-3-Clause 0 3 0 Updated Jan 15, 2026
  • pdex Public

    parallel differential expression for single-cell perturbation sequencing

    ArcInstitute/pdex’s past year of commit activity
    Python 24 MIT 7 8 2 Updated Jan 7, 2026

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