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This PR fixes problems in the CI workflow related to deprecations in the conda ecosystem, mostly by switching to the
mamba-org/setup-micromambaaction to setup conda/mamba.Aside: I tried to switch to using
mambaas the conda frontend for snakemake, but this resulted in errors when snakemake tries to create its conda envs. I could not readily resolve these errors (though I did determine that they are not related to the caching step), so we stick with conda for now (slower, but it works).I manually confirmed that the caching of the snakemake-created conda envs works by running the action twice after clearing the cache. The runtime decreased from 5min to 2min.