Single workflow#5

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arkiev wants to merge 51 commits intomainfrom

single_workflow

Commits on Mar 17, 2026

ported over files from personal repo to shared repo
arkiev
committed

Commits on Mar 18, 2026

working pipeline but DWI is python
arkiev
committed

Commits on Mar 19, 2026

Commits on Mar 20, 2026

fixes to github test (ubuntu-latest, 3.11)
arkiev
committed
Updated cli.py and test_cli.py to align with the pydra 1.0 Submitter API change (plugin → worker) and Click's automatic underscore-to-hyphen conversion in option names (--metric_dir → --metric-dir).
arkiev
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updated readme
arkiev
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Commits on Mar 23, 2026

updated docs to reflect integration of single-workflow changes
arkiev
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Commits on Mar 24, 2026

removed unneeded import
tclose
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Commits on Mar 27, 2026

suppressed registration check for not SPIRIT, runs to compeletion - CHECK TEMPLATE T1!
arkiev
committed

Commits on Mar 30, 2026

removed registration check for non-spirit phantoms
arkiev
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Commits on Mar 31, 2026

removed reg check and rotations - seems redundant given scan protocol
arkiev
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Commits on Apr 2, 2026

Commits on Apr 20, 2026

Commits on Apr 23, 2026

Commits on Apr 29, 2026

Commits on Apr 30, 2026

updated median absolute deviation calculation to use median (not mean) in outer bracket
arkiev
committed

Commits on May 4, 2026

updating parsing to handle SEQ#
arkiev
committed

Commits on May 5, 2026