https://methagingdb.biox-nku.cn/
| Script | Description |
|---|---|
| getDMS.R | Get differentially methylation sites (DMSs) between age groups. |
| getDMR_Bumphunter.R | Get differentially methylation regions (DMRs) between age groups using Bumphunter method. |
| getDMS_continuous.R | Get differentially methylation sites (DMSs) using age as continuous variable. |
| getDMR_DMRcate.R | Get differentially methylation regions (DMRs) between age groups using DMRcate method. |
| run_tSNE.py | Get tSNE scatter plots of each dataset. |
| run_PCA.py | Get scatter plots of each dataset using PCA. |
| run_tSNE_removeXY.py | Get tSNE scatter plots of each dataset without sex chromosomes. |
| run_PCA_removeXY.py | Get scatter plots of each dataset using PCA without sex chromosomes. |