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fix expanded sequence check #28

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fix expanded sequence check #28

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4 changes: 2 additions & 2 deletions R/Ibex_matrix.R
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Original file line number Diff line number Diff line change
Expand Up @@ -102,9 +102,9 @@ Ibex_matrix <- function(input.data,
# Determine dictionary for sequence encoding
if (expanded.sequences) {
#Quick Check to see if there are - corresponding to CDR1-CDR2-CDR3
if (all(grepl("-", BCR[,"cdr3_aa"]))) {
if (!all(grepl("-", BCR[,"cdr3_aa"]))) {
stop("Expanded sequences are not properly formated, please use
combineExpandedBCR().")
combineExpandedBCR() or ensure each element is CDRs 1, 2, and 3 joined by `-`")
}
BCR[,"cdr3_aa"] <- gsub("-", "_", BCR[,"cdr3_aa"])
dictionary <- c(amino.acids, "_")
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